Query 047506
Match_columns 947
No_of_seqs 270 out of 1494
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 11:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 4.1E-43 9E-48 415.0 11.9 133 1-139 703-836 (1373)
2 KOG0385 Chromatin remodeling c 100.0 3E-40 6.4E-45 378.4 12.7 133 1-139 491-624 (971)
3 KOG0386 Chromatin remodeling c 100.0 5.4E-40 1.2E-44 383.5 13.2 319 1-356 730-1080(1157)
4 KOG0391 SNF2 family DNA-depend 100.0 1.3E-35 2.8E-40 347.5 11.6 129 1-135 1280-1408(1958)
5 KOG0389 SNF2 family DNA-depend 100.0 3.8E-35 8.2E-40 337.6 14.3 129 1-135 781-909 (941)
6 KOG0387 Transcription-coupled 100.0 2.1E-34 4.6E-39 331.8 11.7 129 1-135 550-679 (923)
7 KOG0392 SNF2 family DNA-depend 100.0 3.2E-34 6.9E-39 339.1 12.9 133 1-137 1344-1477(1549)
8 KOG0388 SNF2 family DNA-depend 100.0 2.5E-33 5.5E-38 318.7 10.6 128 1-135 1048-1175(1185)
9 PLN03142 Probable chromatin-re 100.0 1.2E-32 2.6E-37 331.7 13.8 132 1-138 491-623 (1033)
10 KOG0390 DNA repair protein, SN 100.0 5E-32 1.1E-36 316.6 13.8 136 1-138 595-731 (776)
11 KOG1002 Nucleotide excision re 100.0 9.2E-29 2E-33 274.8 8.9 129 1-135 642-770 (791)
12 COG0553 HepA Superfamily II DN 99.9 7.8E-28 1.7E-32 279.4 11.6 129 1-135 715-843 (866)
13 KOG1015 Transcription regulato 99.9 3.3E-27 7E-32 274.4 10.0 133 1-137 1146-1300(1567)
14 KOG4439 RNA polymerase II tran 99.9 1.2E-24 2.6E-29 249.3 9.5 129 1-135 750-879 (901)
15 KOG1001 Helicase-like transcri 99.9 9.7E-24 2.1E-28 246.6 -1.4 128 1-134 543-670 (674)
16 KOG1016 Predicted DNA helicase 99.8 1.4E-21 3E-26 224.9 9.2 131 1-135 723-870 (1387)
17 KOG1000 Chromatin remodeling p 99.8 5.8E-21 1.3E-25 213.5 9.7 123 1-129 496-618 (689)
18 PRK04914 ATP-dependent helicas 99.8 2.6E-19 5.7E-24 216.1 14.1 129 1-135 497-626 (956)
19 cd00079 HELICc Helicase superf 99.5 3.3E-14 7E-19 128.6 9.0 100 1-108 32-131 (131)
20 KOG0298 DEAD box-containing he 99.5 2.6E-14 5.7E-19 172.8 3.7 117 1-129 1225-1341(1394)
21 PF00271 Helicase_C: Helicase 99.4 1.7E-13 3.8E-18 117.1 6.2 78 19-100 1-78 (78)
22 smart00490 HELICc helicase sup 99.4 1.4E-12 3.1E-17 108.9 7.9 81 16-100 2-82 (82)
23 PRK13766 Hef nuclease; Provisi 99.4 2.9E-12 6.3E-17 151.8 11.8 117 1-128 369-493 (773)
24 TIGR00603 rad25 DNA repair hel 99.1 3E-10 6.4E-15 135.3 12.3 111 1-123 500-616 (732)
25 PRK04837 ATP-dependent RNA hel 98.7 5.2E-08 1.1E-12 108.4 9.5 103 1-113 259-361 (423)
26 PRK01297 ATP-dependent RNA hel 98.7 7.7E-08 1.7E-12 108.9 10.7 104 1-114 339-442 (475)
27 PTZ00110 helicase; Provisional 98.7 1E-07 2.2E-12 110.5 11.7 104 1-114 381-484 (545)
28 PRK11192 ATP-dependent RNA hel 98.7 8E-08 1.7E-12 107.0 10.2 100 1-108 249-348 (434)
29 TIGR00614 recQ_fam ATP-depende 98.6 9.3E-08 2E-12 108.4 10.3 100 1-108 230-329 (470)
30 KOG0383 Predicted helicase [Ge 98.6 7.6E-09 1.7E-13 122.5 1.5 61 1-68 635-696 (696)
31 PRK11776 ATP-dependent RNA hel 98.6 1.7E-07 3.6E-12 105.5 10.6 104 1-114 246-349 (460)
32 PHA02558 uvsW UvsW helicase; P 98.6 2.4E-07 5.2E-12 106.2 12.0 108 1-115 348-456 (501)
33 TIGR01389 recQ ATP-dependent D 98.6 1.9E-07 4.2E-12 108.6 10.0 98 1-106 228-325 (591)
34 PRK10590 ATP-dependent RNA hel 98.5 2.9E-07 6.2E-12 104.0 10.4 99 1-107 249-347 (456)
35 PTZ00424 helicase 45; Provisio 98.5 3.4E-07 7.3E-12 100.0 10.2 107 1-117 271-377 (401)
36 PLN00206 DEAD-box ATP-dependen 98.5 3.1E-07 6.8E-12 105.7 10.0 105 1-114 371-475 (518)
37 PRK11057 ATP-dependent DNA hel 98.5 4.6E-07 9.9E-12 106.4 10.7 99 1-107 240-338 (607)
38 PRK04537 ATP-dependent RNA hel 98.5 4.7E-07 1E-11 105.8 10.1 99 1-107 261-359 (572)
39 PLN03137 ATP-dependent DNA hel 98.3 1.8E-06 3.8E-11 107.2 10.4 101 1-109 684-784 (1195)
40 COG1111 MPH1 ERCC4-like helica 98.3 4.5E-06 9.8E-11 96.1 12.3 117 1-128 370-495 (542)
41 PRK11634 ATP-dependent RNA hel 98.3 2.2E-06 4.7E-11 101.6 10.0 100 1-108 249-348 (629)
42 COG0513 SrmB Superfamily II DN 98.2 4.2E-06 9.1E-11 96.8 10.2 115 1-126 277-391 (513)
43 TIGR01587 cas3_core CRISPR-ass 98.2 6.8E-06 1.5E-10 88.9 11.0 117 1-126 226-353 (358)
44 KOG0331 ATP-dependent RNA heli 98.2 4.5E-06 9.9E-11 96.8 9.4 97 1-105 345-441 (519)
45 KOG0330 ATP-dependent RNA heli 98.1 9.9E-06 2.2E-10 91.1 9.8 107 1-117 304-410 (476)
46 KOG0328 Predicted ATP-dependen 98.0 1.9E-05 4.1E-10 86.2 8.8 106 1-116 270-375 (400)
47 TIGR03817 DECH_helic helicase/ 98.0 2E-05 4.4E-10 95.1 9.8 114 1-122 275-394 (742)
48 TIGR00580 mfd transcription-re 97.9 3E-05 6.5E-10 95.7 10.4 104 2-113 665-769 (926)
49 COG1061 SSL2 DNA or RNA helica 97.9 3.3E-05 7.1E-10 88.0 9.8 117 1-126 287-406 (442)
50 PRK13767 ATP-dependent helicas 97.9 5.4E-05 1.2E-09 92.9 11.7 104 1-110 288-396 (876)
51 PRK10689 transcription-repair 97.9 4.1E-05 9E-10 96.3 10.8 99 2-106 814-913 (1147)
52 TIGR00643 recG ATP-dependent D 97.8 9.8E-05 2.1E-09 87.5 10.7 89 16-106 471-560 (630)
53 PRK10917 ATP-dependent DNA hel 97.7 0.00012 2.6E-09 87.6 10.9 90 15-106 493-583 (681)
54 KOG0333 U5 snRNP-like RNA heli 97.7 9.3E-05 2E-09 85.9 8.9 98 1-106 521-618 (673)
55 PF13871 Helicase_C_4: Helicas 97.7 0.00011 2.5E-09 80.0 9.1 84 44-129 52-143 (278)
56 KOG0332 ATP-dependent RNA heli 97.7 9.1E-05 2E-09 83.3 8.5 102 1-112 334-441 (477)
57 KOG0348 ATP-dependent RNA heli 97.7 0.00011 2.4E-09 85.4 8.7 96 27-128 471-566 (708)
58 KOG0335 ATP-dependent RNA heli 97.6 0.00016 3.5E-09 83.5 8.5 101 1-109 341-441 (482)
59 COG0514 RecQ Superfamily II DN 97.5 0.0004 8.6E-09 82.3 11.0 101 1-109 234-334 (590)
60 TIGR02621 cas3_GSU0051 CRISPR- 97.5 0.00025 5.4E-09 86.8 9.1 99 1-110 276-390 (844)
61 PRK09200 preprotein translocas 97.5 0.00035 7.6E-09 85.2 9.6 108 1-123 432-547 (790)
62 PRK12898 secA preprotein trans 97.4 0.00048 1E-08 82.6 9.7 109 1-124 477-593 (656)
63 PRK05298 excinuclease ABC subu 97.4 0.001 2.2E-08 79.6 11.8 102 1-113 450-556 (652)
64 TIGR00631 uvrb excinuclease AB 97.3 0.00099 2.1E-08 80.0 11.0 104 1-115 446-554 (655)
65 PF11496 HDA2-3: Class II hist 97.3 0.00063 1.4E-08 74.7 7.8 121 1-129 121-260 (297)
66 TIGR01970 DEAH_box_HrpB ATP-de 97.2 0.00088 1.9E-08 82.2 9.3 110 1-116 213-338 (819)
67 TIGR00963 secA preprotein tran 97.2 0.0012 2.7E-08 80.0 9.9 96 1-106 409-511 (745)
68 KOG0345 ATP-dependent RNA heli 97.2 0.0013 2.8E-08 76.0 9.0 98 6-109 263-361 (567)
69 KOG0341 DEAD-box protein abstr 97.1 0.00073 1.6E-08 76.6 6.6 95 1-103 425-519 (610)
70 KOG0327 Translation initiation 97.1 0.0013 2.8E-08 74.3 8.5 106 1-116 267-372 (397)
71 PRK11664 ATP-dependent RNA hel 97.1 0.0011 2.4E-08 81.3 8.5 111 1-117 216-342 (812)
72 KOG0343 RNA Helicase [RNA proc 97.1 0.0052 1.1E-07 72.4 13.4 119 1-128 317-435 (758)
73 PHA02653 RNA helicase NPH-II; 97.1 0.0021 4.4E-08 77.6 10.6 110 1-117 399-517 (675)
74 PRK02362 ski2-like helicase; P 97.1 0.0022 4.7E-08 77.5 10.5 82 29-112 305-395 (737)
75 PRK09751 putative ATP-dependen 97.1 0.0017 3.6E-08 83.8 9.8 77 30-108 304-381 (1490)
76 KOG0326 ATP-dependent RNA heli 97.0 0.00046 9.9E-09 76.7 3.8 102 1-112 326-427 (459)
77 PRK01172 ski2-like helicase; P 97.0 0.0024 5.2E-08 76.1 9.6 76 30-108 288-374 (674)
78 KOG4284 DEAD box protein [Tran 97.0 0.001 2.2E-08 79.0 6.3 95 1-103 276-370 (980)
79 KOG0350 DEAD-box ATP-dependent 97.0 0.0011 2.5E-08 76.9 6.2 108 1-114 433-540 (620)
80 KOG0342 ATP-dependent RNA heli 97.0 0.00089 1.9E-08 77.5 5.4 94 1-102 334-427 (543)
81 TIGR03714 secA2 accessory Sec 97.0 0.0025 5.5E-08 77.6 9.3 106 1-122 428-542 (762)
82 PRK12906 secA preprotein trans 96.9 0.0025 5.4E-08 78.0 9.0 96 1-106 444-547 (796)
83 PF06465 DUF1087: Domain of Un 96.9 0.00021 4.4E-09 63.3 -0.3 37 213-249 23-63 (66)
84 KOG0344 ATP-dependent RNA heli 96.9 0.0035 7.6E-08 73.9 9.0 104 1-113 391-494 (593)
85 PRK11448 hsdR type I restricti 96.7 0.0061 1.3E-07 77.3 9.8 104 1-111 702-815 (1123)
86 KOG0953 Mitochondrial RNA heli 96.5 0.0063 1.4E-07 71.7 7.6 85 17-104 372-466 (700)
87 KOG1123 RNA polymerase II tran 96.5 0.011 2.4E-07 69.1 9.4 87 33-120 568-659 (776)
88 PRK05580 primosome assembly pr 96.5 0.016 3.5E-07 70.0 11.2 97 13-111 438-548 (679)
89 TIGR00595 priA primosomal prot 96.5 0.013 2.7E-07 68.6 10.1 95 14-110 271-379 (505)
90 KOG0349 Putative DEAD-box RNA 96.4 0.0084 1.8E-07 69.0 8.2 92 1-98 509-601 (725)
91 KOG0338 ATP-dependent RNA heli 96.4 0.0096 2.1E-07 69.7 8.2 112 1-124 430-541 (691)
92 KOG0340 ATP-dependent RNA heli 96.3 0.01 2.2E-07 67.1 7.4 94 1-102 258-351 (442)
93 PRK00254 ski2-like helicase; P 96.2 0.019 4.2E-07 69.3 10.3 84 29-114 297-388 (720)
94 KOG0354 DEAD-box like helicase 96.2 0.02 4.3E-07 69.7 10.1 102 1-109 417-527 (746)
95 PRK12900 secA preprotein trans 96.1 0.014 3E-07 72.8 8.5 108 1-123 602-717 (1025)
96 KOG0351 ATP-dependent DNA heli 96.1 0.012 2.5E-07 73.5 7.5 104 1-112 489-592 (941)
97 COG1202 Superfamily II helicas 96.0 0.0082 1.8E-07 71.1 5.1 105 1-114 444-553 (830)
98 KOG0336 ATP-dependent RNA heli 95.9 0.019 4.2E-07 65.9 7.4 96 1-104 469-564 (629)
99 PRK11131 ATP-dependent RNA hel 95.8 0.021 4.6E-07 73.2 8.4 109 1-117 290-414 (1294)
100 PF14619 SnAC: Snf2-ATP coupli 95.8 0.0032 6.9E-08 56.4 0.7 47 205-251 18-71 (74)
101 COG1200 RecG RecG-like helicas 95.4 0.05 1.1E-06 65.7 8.7 85 19-105 499-584 (677)
102 PRK13104 secA preprotein trans 95.2 0.067 1.4E-06 66.6 9.5 107 1-122 448-592 (896)
103 PRK13107 preprotein translocas 94.9 0.082 1.8E-06 65.8 9.0 107 1-122 453-596 (908)
104 KOG0339 ATP-dependent RNA heli 94.8 0.06 1.3E-06 63.4 7.1 98 14-117 481-578 (731)
105 PRK09694 helicase Cas3; Provis 94.8 0.12 2.5E-06 64.7 10.0 88 12-102 571-665 (878)
106 KOG0347 RNA helicase [RNA proc 94.8 0.037 8E-07 65.5 5.2 93 1-101 467-559 (731)
107 TIGR01967 DEAH_box_HrpA ATP-de 94.7 0.062 1.4E-06 69.2 7.6 107 1-118 283-408 (1283)
108 KOG0334 RNA helicase [RNA proc 94.5 0.12 2.6E-06 64.7 8.8 103 1-113 617-719 (997)
109 TIGR03158 cas3_cyano CRISPR-as 94.2 0.094 2E-06 58.5 6.7 81 1-96 276-356 (357)
110 PRK12904 preprotein translocas 94.2 0.2 4.3E-06 62.3 9.8 107 1-122 434-578 (830)
111 COG1201 Lhr Lhr-like helicases 91.9 0.73 1.6E-05 57.4 10.1 118 1-129 257-375 (814)
112 PRK09401 reverse gyrase; Revie 91.5 0.49 1.1E-05 61.0 8.3 88 1-97 332-429 (1176)
113 KOG0346 RNA helicase [RNA proc 91.2 0.43 9.4E-06 55.8 6.7 104 1-111 272-409 (569)
114 PRK14701 reverse gyrase; Provi 90.1 0.66 1.4E-05 61.6 7.8 93 1-102 334-446 (1638)
115 COG1197 Mfd Transcription-repa 89.9 1.3 2.8E-05 56.8 9.7 96 14-113 816-912 (1139)
116 KOG0352 ATP-dependent DNA heli 88.7 0.79 1.7E-05 53.6 6.1 94 12-109 266-359 (641)
117 TIGR01054 rgy reverse gyrase. 87.8 1.6 3.5E-05 56.5 8.7 75 1-83 330-408 (1171)
118 COG1203 CRISPR-associated heli 87.5 1.6 3.6E-05 53.6 8.3 99 27-129 464-567 (733)
119 COG4889 Predicted helicase [Ge 86.6 1.1 2.3E-05 56.3 5.8 88 28-116 500-591 (1518)
120 PF13307 Helicase_C_2: Helicas 85.7 1.1 2.4E-05 44.9 4.7 76 1-86 13-95 (167)
121 TIGR01407 dinG_rel DnaQ family 83.7 4.9 0.00011 50.3 9.9 75 1-84 678-756 (850)
122 COG0556 UvrB Helicase subunit 82.5 5 0.00011 48.4 8.7 106 12-122 457-567 (663)
123 COG1199 DinG Rad3-related DNA 82.5 6.9 0.00015 47.0 10.1 78 1-88 483-564 (654)
124 TIGR00348 hsdR type I site-spe 81.9 8.5 0.00018 47.1 10.8 68 43-112 580-649 (667)
125 KOG0922 DEAH-box RNA helicase 81.4 2.8 6.2E-05 51.1 6.4 100 12-116 273-392 (674)
126 smart00492 HELICc3 helicase su 78.3 20 0.00043 35.8 10.2 71 13-87 3-83 (141)
127 TIGR00596 rad1 DNA repair prot 78.2 3.3 7.1E-05 52.0 5.7 49 75-128 478-528 (814)
128 COG1204 Superfamily II helicas 78.2 2.4 5.2E-05 52.8 4.6 66 34-102 321-396 (766)
129 PRK08074 bifunctional ATP-depe 77.2 9.6 0.00021 48.4 9.5 81 1-87 756-839 (928)
130 PRK12903 secA preprotein trans 77.1 9.1 0.0002 48.6 9.0 109 1-123 430-545 (925)
131 KOG0337 ATP-dependent RNA heli 75.7 4.5 9.8E-05 47.6 5.5 96 13-114 273-368 (529)
132 KOG0949 Predicted helicase, DE 75.6 5.6 0.00012 50.8 6.6 90 34-128 969-1059(1330)
133 TIGR01541 tape_meas_lam_C phag 72.8 42 0.00092 38.3 12.2 57 524-581 83-158 (332)
134 TIGR00604 rad3 DNA repair heli 72.5 17 0.00037 44.7 9.7 82 1-87 526-619 (705)
135 PRK12326 preprotein translocas 72.1 16 0.00034 45.8 9.2 110 1-124 431-554 (764)
136 COG1198 PriA Primosomal protei 71.7 24 0.00051 44.2 10.6 100 14-115 493-606 (730)
137 smart00385 CYCLIN domain prese 70.4 28 0.00061 29.0 7.8 58 336-396 3-60 (83)
138 PF00382 TFIIB: Transcription 70.3 21 0.00046 31.1 7.3 60 336-399 1-61 (71)
139 PF10168 Nup88: Nuclear pore c 69.9 93 0.002 39.1 15.1 102 459-565 557-662 (717)
140 COG1205 Distinct helicase fami 69.3 9 0.0002 48.4 6.5 91 28-122 339-430 (851)
141 KOG1029 Endocytic adaptor prot 67.4 41 0.00089 42.4 11.1 22 499-520 399-420 (1118)
142 PF09731 Mitofilin: Mitochondr 66.8 83 0.0018 37.7 13.5 93 478-575 307-400 (582)
143 KOG1513 Nuclear helicase MOP-3 66.7 6.5 0.00014 49.3 4.4 95 27-123 820-933 (1300)
144 KOG0924 mRNA splicing factor A 66.3 15 0.00033 45.7 7.3 121 12-135 578-721 (1042)
145 PRK12899 secA preprotein trans 65.8 24 0.00052 45.3 9.1 107 1-122 572-686 (970)
146 smart00491 HELICc2 helicase su 64.6 40 0.00087 33.6 8.8 72 13-87 3-84 (142)
147 KOG2891 Surface glycoprotein [ 63.9 48 0.001 37.5 9.9 83 481-568 334-421 (445)
148 PRK12704 phosphodiesterase; Pr 63.4 1.6E+02 0.0034 35.7 14.9 9 766-774 364-372 (520)
149 PF09731 Mitofilin: Mitochondr 63.0 1E+02 0.0022 37.1 13.2 52 459-510 310-362 (582)
150 KOG2398 Predicted proline-seri 61.5 2.3E+02 0.0049 35.3 15.9 166 457-643 63-240 (611)
151 PF08703 PLC-beta_C: PLC-beta 60.2 1.8E+02 0.0038 31.2 12.9 78 477-559 55-144 (185)
152 COG4098 comFA Superfamily II D 58.0 37 0.0008 39.6 8.0 93 1-101 309-403 (441)
153 PRK11747 dinG ATP-dependent DN 55.1 63 0.0014 40.1 10.0 77 1-87 538-620 (697)
154 KOG4403 Cell surface glycoprot 54.0 1.3E+02 0.0028 36.0 11.5 37 549-585 390-426 (575)
155 COG4096 HsdR Type I site-speci 51.6 29 0.00062 44.0 6.4 105 1-111 430-545 (875)
156 KOG4819 Uncharacterized conser 50.8 27 0.00059 33.9 4.7 91 459-557 12-103 (106)
157 KOG1265 Phospholipase C [Lipid 50.3 2.1E+02 0.0046 37.1 13.1 32 526-557 1134-1165(1189)
158 PF13607 Succ_CoA_lig: Succiny 50.1 41 0.00088 33.7 6.1 85 2-111 6-90 (138)
159 PF06862 DUF1253: Protein of u 49.7 1.1E+02 0.0023 36.6 10.3 95 15-112 314-413 (442)
160 KOG0329 ATP-dependent RNA heli 48.4 9.7 0.00021 42.6 1.6 45 59-103 302-346 (387)
161 COG1643 HrpA HrpA-like helicas 48.3 42 0.0009 42.8 7.1 100 12-117 274-390 (845)
162 PF15066 CAGE1: Cancer-associa 46.7 2.6E+02 0.0056 34.0 12.5 114 459-573 382-523 (527)
163 PRK00106 hypothetical protein; 46.2 4.6E+02 0.0099 32.3 14.9 11 848-858 466-476 (535)
164 PF10234 Cluap1: Clusterin-ass 45.7 2.8E+02 0.006 31.3 12.1 93 462-565 164-261 (267)
165 TIGR03319 YmdA_YtgF conserved 45.5 4.7E+02 0.01 31.8 14.9 18 549-566 122-139 (514)
166 PRK00409 recombination and DNA 45.0 3.4E+02 0.0074 34.5 14.2 86 456-558 509-597 (782)
167 PRK13103 secA preprotein trans 44.9 46 0.001 42.7 6.8 98 2-108 454-587 (913)
168 cd00043 CYCLIN Cyclin box fold 44.9 1.6E+02 0.0035 24.6 8.2 60 334-396 7-66 (88)
169 KOG0353 ATP-dependent DNA heli 44.0 38 0.00082 39.8 5.4 93 14-110 330-465 (695)
170 KOG3478 Prefoldin subunit 6, K 43.6 48 0.001 33.0 5.3 40 450-489 73-112 (120)
171 PRK07246 bifunctional ATP-depe 43.1 1.2E+02 0.0026 38.5 10.0 75 1-86 651-728 (820)
172 PF04111 APG6: Autophagy prote 42.2 2.9E+02 0.0063 31.4 11.9 82 465-554 48-129 (314)
173 KOG0951 RNA helicase BRR2, DEA 41.2 44 0.00095 44.4 5.8 70 28-100 608-688 (1674)
174 PRK12901 secA preprotein trans 39.4 66 0.0014 42.1 6.9 90 12-107 639-736 (1112)
175 PRK00409 recombination and DNA 38.1 5.4E+02 0.012 32.8 14.5 41 527-567 555-595 (782)
176 PF03037 KMP11: Kinetoplastid 37.7 88 0.0019 29.2 5.7 51 527-577 10-74 (90)
177 TIGR01069 mutS2 MutS2 family p 37.3 4.6E+02 0.01 33.4 13.7 83 457-556 505-590 (771)
178 PF14988 DUF4515: Domain of un 36.6 5.7E+02 0.012 27.6 13.1 80 469-560 17-96 (206)
179 PF03233 Cauli_AT: Aphid trans 36.6 2.5E+02 0.0055 29.6 9.4 81 414-508 53-137 (163)
180 PF03938 OmpH: Outer membrane 36.4 3.9E+02 0.0085 26.4 10.6 78 481-570 42-119 (158)
181 PRK15365 type III secretion sy 36.2 1.9E+02 0.0041 28.4 7.9 74 490-563 10-89 (107)
182 PRK14873 primosome assembly pr 35.8 54 0.0012 40.7 5.4 79 14-108 440-535 (665)
183 PF12128 DUF3584: Protein of u 35.4 6E+02 0.013 33.9 14.8 64 527-600 710-773 (1201)
184 PRK03963 V-type ATP synthase s 34.6 5.4E+02 0.012 26.6 11.9 30 459-488 13-42 (198)
185 KOG2129 Uncharacterized conser 34.5 4.6E+02 0.01 31.6 12.0 22 408-429 192-213 (552)
186 PF04888 SseC: Secretion syste 33.3 1.3E+02 0.0028 33.3 7.3 49 463-511 7-55 (306)
187 PF04504 DUF573: Protein of un 32.9 1.6E+02 0.0036 28.0 7.0 55 371-435 13-71 (98)
188 KOG1265 Phospholipase C [Lipid 32.1 3.4E+02 0.0074 35.5 11.1 111 467-577 942-1084(1189)
189 PF03310 Cauli_DNA-bind: Cauli 31.0 1E+02 0.0022 31.1 5.4 50 479-528 7-56 (121)
190 KOG1029 Endocytic adaptor prot 31.0 3.6E+02 0.0078 34.8 10.9 14 231-249 109-122 (1118)
191 COG1390 NtpE Archaeal/vacuolar 30.8 4.7E+02 0.01 28.0 10.6 11 660-670 162-172 (194)
192 KOG0926 DEAH-box RNA helicase 30.4 47 0.001 42.4 3.6 68 46-116 620-706 (1172)
193 PRK13556 azoreductase; Provisi 30.1 25 0.00055 36.4 1.2 32 70-101 86-120 (208)
194 KOG4150 Predicted ATP-dependen 29.7 60 0.0013 40.1 4.2 88 31-122 561-648 (1034)
195 PF15254 CCDC14: Coiled-coil d 29.1 1.3E+03 0.029 29.9 15.3 92 464-556 445-543 (861)
196 PRK00423 tfb transcription ini 28.8 2.6E+02 0.0055 31.5 8.8 79 336-424 223-302 (310)
197 KOG1937 Uncharacterized conser 28.1 4.1E+02 0.0088 32.3 10.3 97 462-560 384-503 (521)
198 PF01857 RB_B: Retinoblastoma- 27.9 71 0.0015 32.2 3.9 51 335-388 17-67 (135)
199 PF12622 NpwBP: mRNA biogenesi 27.2 30 0.00065 29.5 0.9 11 77-87 4-14 (48)
200 PHA02562 46 endonuclease subun 27.0 5.1E+02 0.011 30.7 11.2 34 487-520 335-372 (562)
201 TIGR01069 mutS2 MutS2 family p 26.9 1.1E+03 0.023 30.3 14.5 51 527-577 550-602 (771)
202 PF01765 RRF: Ribosome recycli 26.6 4.4E+02 0.0096 27.0 9.3 58 455-512 93-163 (165)
203 PRK01194 V-type ATP synthase s 26.2 7.8E+02 0.017 25.9 12.7 36 556-591 65-100 (185)
204 PRK11637 AmiB activator; Provi 26.0 8E+02 0.017 28.6 12.4 9 925-933 418-426 (428)
205 KOG0577 Serine/threonine prote 25.6 2.9E+02 0.0064 34.9 8.9 74 478-557 788-862 (948)
206 COG5559 Uncharacterized conser 25.4 67 0.0015 28.9 2.8 44 337-387 2-46 (65)
207 PF01991 vATP-synt_E: ATP synt 25.1 5.4E+02 0.012 26.1 9.6 24 495-518 37-60 (198)
208 KOG0925 mRNA splicing factor A 24.9 43 0.00094 40.6 2.0 63 56-120 314-393 (699)
209 PRK00423 tfb transcription ini 24.9 3.9E+02 0.0085 30.1 9.3 89 324-422 118-206 (310)
210 cd00084 HMG-box High Mobility 24.5 1.6E+02 0.0034 24.3 4.7 38 468-508 27-64 (66)
211 KOG0161 Myosin class II heavy 24.2 5.9E+02 0.013 36.0 12.1 89 463-556 1501-1590(1930)
212 COG1196 Smc Chromosome segrega 23.7 9.9E+02 0.022 31.8 13.8 49 462-510 318-368 (1163)
213 PF10154 DUF2362: Uncharacteri 23.6 4.7E+02 0.01 32.1 10.1 30 541-577 170-199 (510)
214 PF07324 DGCR6: DiGeorge syndr 23.5 7.1E+02 0.015 27.1 10.4 33 471-503 74-106 (196)
215 cd04195 GT2_AmsE_like GT2_AmsE 23.2 2.9E+02 0.0064 27.1 7.2 84 12-96 14-105 (201)
216 KOG0952 DNA/RNA helicase MER3/ 22.9 2.2E+02 0.0047 37.7 7.4 84 34-120 403-497 (1230)
217 KOG0250 DNA repair protein RAD 22.7 1.5E+03 0.033 30.3 14.7 17 415-431 257-273 (1074)
218 PF07106 TBPIP: Tat binding pr 22.7 4.3E+02 0.0093 26.9 8.4 50 461-510 110-166 (169)
219 TIGR03249 KdgD 5-dehydro-4-deo 22.7 4.1E+02 0.0089 29.4 8.8 102 14-124 28-151 (296)
220 KOG0920 ATP-dependent RNA heli 22.0 75 0.0016 41.0 3.4 107 12-121 428-551 (924)
221 PRK11637 AmiB activator; Provi 21.9 9.7E+02 0.021 28.0 12.0 25 487-511 192-216 (428)
222 PF10154 DUF2362: Uncharacteri 21.9 3.3E+02 0.0072 33.3 8.4 85 464-559 115-200 (510)
223 cd01390 HMGB-UBF_HMG-box HMGB- 21.8 1.8E+02 0.0039 24.3 4.6 37 468-507 27-63 (66)
224 PF10211 Ax_dynein_light: Axon 21.7 4.3E+02 0.0093 28.0 8.3 55 462-517 122-176 (189)
225 COG4942 Membrane-bound metallo 21.6 1.4E+03 0.03 27.7 13.0 96 467-589 38-133 (420)
226 PRK00083 frr ribosome recyclin 21.4 5.1E+02 0.011 27.5 8.8 59 454-512 110-181 (185)
227 PRK14011 prefoldin subunit alp 21.4 3.4E+02 0.0075 27.8 7.3 49 459-508 87-135 (144)
228 PRK08475 F0F1 ATP synthase sub 21.1 6.2E+02 0.014 26.1 9.2 46 475-520 78-123 (167)
229 PF03962 Mnd1: Mnd1 family; I 20.9 8.5E+02 0.018 25.8 10.3 20 488-507 75-94 (188)
230 PF11262 Tho2: Transcription f 20.6 3.1E+02 0.0066 30.9 7.4 65 496-573 27-91 (298)
231 PF14942 Muted: Organelle biog 20.2 9.6E+02 0.021 24.7 11.0 41 504-549 100-140 (145)
232 COG3707 AmiR Response regulato 20.0 1.3E+02 0.0027 32.5 4.0 26 489-514 125-150 (194)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.1e-43 Score=415.03 Aligned_cols=133 Identities=35% Similarity=0.506 Sum_probs=129.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .|||||++||..| +++|.||||+++..-|+++||+||. +++.|||||||||||+||||++||||||
T Consensus 703 LIFSQMV----RmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 703 LIFSQMV----RMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred EEhHHHH----HHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 7999999 9999999999998 9999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcccc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRP 139 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~~ 139 (947)
||+||||++|+||++|||||||++.|.||||||++||||.|+++|++|+.||++||+.+.
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMD 836 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999985543
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3e-40 Score=378.43 Aligned_cols=133 Identities=32% Similarity=0.491 Sum_probs=129.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .|||||+||+..| ++.|+||||+++.++|..+|+.||. ++..|||||||||||+||||++||+||+
T Consensus 491 LIFSQmt----~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 491 LIFSQMT----RMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred EEeHHHH----HHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 7999999 9999999999988 9999999999999999999999999 7789999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcccc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRP 139 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~~ 139 (947)
||+||||++|+||++|||||||+|+|+||||+|.+||||+|+.+|..|+.|++.||..++
T Consensus 565 yDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~ 624 (971)
T KOG0385|consen 565 YDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGR 624 (971)
T ss_pred ecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCc
Confidence 999999999999999999999999999999999999999999999999999999997764
No 3
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.4e-40 Score=383.52 Aligned_cols=319 Identities=25% Similarity=0.300 Sum_probs=214.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|+|||+| .+||||++||..+ ++.|.|+||+++.++|..+++.||. ++++|+||+||||||+||||++||+|||
T Consensus 730 LlF~qMT----rlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 730 LLFSQMT----RLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred hhHHHHH----HHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 6899999 9999999999977 9999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhccccccccCcccchhhhhhhhHHH
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLND 159 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~~l~~F~~~s~~~~~eq~~ldd 159 (947)
||+||||++|+||.+|||||||++.|+|+||++.++|||+|+..|..|+.+|..|| ++|+|++.++....+ .++..
T Consensus 804 fdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kvi---qag~fdn~st~~eR~-~~Le~ 879 (1157)
T KOG0386|consen 804 FDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVI---QAGKFDNKSTAEERE-MFLEQ 879 (1157)
T ss_pred ecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhh---hcccccCCCcHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 789999985543322 12222
Q ss_pred HH--------------HHHHHHHhhcCCCCchhhHHHHHHHHhhcCccccCCCCCCCCcccCC-CCCCChhhHHhhhcCC
Q 047506 160 VV--------------QEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGM-DEERPHIFWTNLLEGK 224 (947)
Q Consensus 160 lI--------------~ELleiL~~~~ed~e~~~fs~I~~~~~n~~~y~s~~~L~gEre~~~~-deE~P~~fW~kLLe~~ 224 (947)
++ ..++.++++.++ +..-|..|+........+.. ...+++ +.++|..+..+..+..
T Consensus 880 ~l~~~~~~~~~~v~~~~~ln~~larsee--E~~~f~~md~~r~~~e~~~~-------~k~rl~ee~e~p~~i~~~~~~~~ 950 (1157)
T KOG0386|consen 880 LLEMEGDEEEEEVPDDEVLNSMLARSEE--EFELFHKMDEERRATENQQE-------KKPRLVEEAELPADIYKRDQGVE 950 (1157)
T ss_pred HHhCCCccccccCCcHHHHHHHHhcchH--HHHHHHHhhHHHHhhhhhcc-------ccchhhhhhhcHHHHHhcchhhh
Confidence 22 124445555422 22234444433322111111 123444 3467754333322211
Q ss_pred ----CCccccccCCCCcccceeecCcccccCcch--------hhH--HHHHhhhhhccccCCCCCCCCCccCCCCcCCCC
Q 047506 225 ----HPCWKYYSGSSQGSRKRVQYFDDLQKKPEL--------EID--EVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDK 290 (947)
Q Consensus 225 ----~p~~~~~~GrG~R~RK~V~Y~D~l~e~~~~--------E~~--e~~KKRKKv~n~~~d~~s~kaa~~e~k~v~~dk 290 (947)
........|||.|+||.|.|.|.+++..-. +.. +++++.|+.+..++.+.+. .+++.++...
T Consensus 951 ~~~~~~~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 1026 (1157)
T KOG0386|consen 951 RLSEEEEEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLSQ----KKRKLRPRSP 1026 (1157)
T ss_pred hhhhhhhhhccccccccccceeecccccchhhhhhhccccccccchhhhhccCCCccccccccchh----hcccccCCCh
Confidence 111122369999999999999998866321 111 1111122221111111111 1121211100
Q ss_pred --CCCCCCCccccccccCCCCcccccCccccccchhhhhhhhhccHHHHHHHHHhccchhHHHHHHHH
Q 047506 291 --EGTSVDSSTIHWTCASSSTLVNNFPETSRELSYLQKSLHLLLKPEMAKLCEVLKLREDVKDTVGKF 356 (947)
Q Consensus 291 --~g~lpdssT~hlns~ss~~~l~~ks~g~~nlh~SqKsLHl~LKpEisKLceIL~LPenVK~mv~~f 356 (947)
+-.+.+.+.+|- .+++.++ +.-.+.+..+.+.+-+++|++-|-.++..-.++
T Consensus 1027 ~~~~~i~~~~~~~~--~~~~r~~------------~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i 1080 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYK--DSAGREL------------SEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRI 1080 (1157)
T ss_pred HHHHHHHHHHHhcc--ccccccc------------chhcccCcccccccchHHHhcchhhHHHHhhhc
Confidence 000000000000 2233333 556777888999999999999998888776554
No 4
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=347.53 Aligned_cols=129 Identities=29% Similarity=0.479 Sum_probs=127.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+||+ .|||+|+.||... |+-|+||||+++.++||.++++||.|+.+|||+||||.||+|+||++||+||||
T Consensus 1280 LIfTQMt----kmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1280 LIFTQMT----KMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred EehhHHH----HHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 7999999 9999999999965 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|+||||.+|.||++|||||||+|.|+|||||+..||||+|+..+.+|..|++.+|
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evai 1408 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAI 1408 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-35 Score=337.60 Aligned_cols=129 Identities=29% Similarity=0.407 Sum_probs=127.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||||| +||||||.+|..+ ++.|+|+||+|....||.+|+.|+.+.++|||||||+|||.||||++||+|||+
T Consensus 781 LiFSQFT----qmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIih 854 (941)
T KOG0389|consen 781 LIFSQFT----QMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIH 854 (941)
T ss_pred EEeeHHH----HHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEe
Confidence 6999999 9999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|-++||..|.||.|||||+||+|+|+|||||+++||||.|+++|+.|+.|+..+.
T Consensus 855 D~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 855 DIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred ecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999884
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-34 Score=331.79 Aligned_cols=129 Identities=29% Similarity=0.439 Sum_probs=125.6
Q ss_pred CEEEeecCChhhHHHHHHHHHH-hhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVR-QRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~-~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|+|||.. .||||||.||. .. |++|+|+||+++...|+.+|++||++...+||||+|++||+|||||+||+|||
T Consensus 550 llFsqs~----~mLdilE~fL~~~~--~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 550 LLFSQSR----QMLDILESFLRRAK--GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred EEehhHH----HHHHHHHHHHHhcC--CceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 6899999 99999999999 45 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|||||||+.|.||..|||||||+|.|.||||++.+||||+||.+|-+|..|.+.+.
T Consensus 624 fDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il 679 (923)
T KOG0387|consen 624 FDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRIL 679 (923)
T ss_pred ECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999884
No 7
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.2e-34 Score=339.05 Aligned_cols=133 Identities=26% Similarity=0.381 Sum_probs=127.8
Q ss_pred CEEEeecCChhhHHHHHHHHHH-hhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVR-QRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~-~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||||+. .|+|+++.-|- ..++.+.|.|+||++++.+|++++.+||++|.+.|+||+|..||+|||||+||||||
T Consensus 1344 LIFcQlK----~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1344 LIFCQLK----SMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred EEeeeHH----HHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 7999999 99999997665 447889999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNM 137 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi 137 (947)
++.||||+.|+|||||||||||+|.|+||||||+||+|||||-+|++|+.++++|++.
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInq 1477 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQ 1477 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999854
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-33 Score=318.68 Aligned_cols=128 Identities=33% Similarity=0.531 Sum_probs=125.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|+|+|++ .|+|+||+||..| |+.|+|+||+.+..+|..++..|+. +++|||||||||||+|||||+||+||||
T Consensus 1048 L~yfQMT----kM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1048 LMYFQMT----KMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred EehhHHH----HHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEe
Confidence 6899999 9999999999988 9999999999999999999999998 8999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|+||||..|+||++||||.||++.|+||||++++||||+|+.++.+|..+...|+
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888885
No 9
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.98 E-value=1.2e-32 Score=331.73 Aligned_cols=132 Identities=36% Similarity=0.541 Sum_probs=127.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .||++|++||..+ |+.|++|||+++..+|+.+|++||. ++..+|||+||+|||+||||++||+||+
T Consensus 491 LIFSQft----~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 491 LIFSQMT----RLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred EeehhHH----HHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 7999999 9999999999977 9999999999999999999999998 6778999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhccc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMR 138 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~ 138 (947)
||+||||+.+.||+||||||||+++|+||||++.+||||+|++++..|+.|+..|++.+
T Consensus 565 yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g 623 (1033)
T PLN03142 565 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG 623 (1033)
T ss_pred eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998544
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.97 E-value=5e-32 Score=316.59 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=130.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
++|+|...+.+.+||+++..++++ |+.++|+||+++..+|+.+|++||+ .+..||||+|++|||.||||++|+|||+
T Consensus 595 ~~~~v~Isny~~tldl~e~~~~~~--g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 595 LVKSVLISNYTQTLDLFEQLCRWR--GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred ceEEEEeccHHHHHHHHHHHHhhc--CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 579999999999999999999998 9999999999999999999999999 5555999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhccc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMR 138 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi~ 138 (947)
|||+|||++|.|||+||||+||+|+|+||||++.||+||+||++|.+|..|...|++++
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 99999999999999999999999999999999999999999999999999999998663
No 11
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.95 E-value=9.2e-29 Score=274.80 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=125.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||||+ +|||+|+-.|... |++++.++|+|++..|..+|+.|.+++++.|||+|.+|||+.|||+.|++|+++
T Consensus 642 IVFSQFT----SmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 642 IVFSQFT----SMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred hhHHHHH----HHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 6899999 9999999999977 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
||||||+.+.||++|+|||||.|+|+|.||+.++||||+|+.+|++|..+-+.-+
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi 770 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATI 770 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999998777765
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=7.8e-28 Score=279.38 Aligned_cols=129 Identities=26% Similarity=0.441 Sum_probs=125.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+||+ .|+|+|+++|..+ ++.|+++||+++...|+..+++|++++..+|||+|++|||+||||++|++||+|
T Consensus 715 lifsq~t----~~l~il~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~ 788 (866)
T COG0553 715 LIFSQFT----PVLDLLEDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILF 788 (866)
T ss_pred EEEeCcH----HHHHHHHHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEe
Confidence 6899999 9999999999988 789999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
||||||+.+.||++|+|||||+++|.||||++++|+||+|+.++..|+.+...++
T Consensus 789 d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~ 843 (866)
T COG0553 789 DPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLI 843 (866)
T ss_pred ccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988886
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.94 E-value=3.3e-27 Score=274.44 Aligned_cols=133 Identities=23% Similarity=0.349 Sum_probs=125.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh--c------------------CCCcEEEEeCCCCHHHHHHHHHhhhc--CCCceEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR--F------------------GSDSYERVDGNVLDSKKKAALQNFNN--GSGRFVF 58 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r--f------------------~Gi~y~RLDGsts~~eRq~aId~FN~--ds~~fVF 58 (947)
|||||+. ..||+|++||... . .|..|+||||++...+|++..++||+ +-..++|
T Consensus 1146 LVFSQSL----~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1146 LVFSQSL----ISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred EEeeccc----chhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 7999999 9999999999742 0 16799999999999999999999998 6778999
Q ss_pred EEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcc
Q 047506 59 LLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNM 137 (947)
Q Consensus 59 LLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi 137 (947)
|+|||||++||||.+||+|||||-.|||..|.|+|=|+||.||+|||+||||++.||+||+||.+|-.|..++.-|+|-
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDE 1300 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888743
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.2e-24 Score=249.26 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=124.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
+|.|||+ ++|++++..|..- |+.|..|+|.+...+|+.+++.||. ..+..|+|+|..|||+||||++|||+|+
T Consensus 750 viVSQwt----svLniv~~hi~~~--g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 750 VIVSQWT----SVLNIVRKHIQKG--GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred eehhHHH----HHHHHHHHHHhhC--CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 5789999 9999999999986 9999999999999999999999999 6669999999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
+|..|||+.+.||.+|+||+||+|+|+||||++.+|||++|..+|..|.+++..|.
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL 879 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVL 879 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999886
No 15
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=9.7e-24 Score=246.59 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=123.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||||+ .++++++-.|... ++.|.|+||.+....|.+.+..|..++...|+|+|.+|||+||||++|+|||++
T Consensus 543 iifsq~~----~~l~l~~~~l~~~--~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 543 VIFSQLI----WGLALVCLRLFFK--GFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred eeehhHH----HHHHHhhhhhhhc--ccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 6999999 9999999999955 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA 134 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~V 134 (947)
||||||..+.|||+|||||||+|+|.|+||+..+||||+|+.++.+|..+....
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a 670 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASA 670 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999765543
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=224.88 Aligned_cols=131 Identities=25% Similarity=0.377 Sum_probs=121.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC----------------CCcEEEEeCCCCHHHHHHHHHhhhcCCCc-eEEEEecc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG----------------SDSYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETR 63 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~----------------Gi~y~RLDGsts~~eRq~aId~FN~ds~~-fVFLLSTr 63 (947)
|||||.. ..||+|+.+|..+-. ..+|.|+||.++..+|.++|++||..+++ ..||||||
T Consensus 723 l~fSq~l----~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 723 LIFSQNL----TALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred EEeecch----hHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 6999999 999999999987611 35899999999999999999999995555 59999999
Q ss_pred cCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 64 ACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 64 AGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
||.+|+||.+|++|||||.-|||..+.||.+|++|+||+|+++|||||+.+|+|.+||.++-.|..+..-|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvV 870 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVV 870 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998766654
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=5.8e-21 Score=213.50 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=120.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||.+.. .|||-|+.|+..+ ++.+.||||++++.+|+.+.+.|+.++.+.|-+||..|||+||+|++|+.|+|.
T Consensus 496 lVFaHH~----~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 496 LVFAHHQ----IVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred EEEehhH----HHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 6899999 9999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKT 129 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~ 129 (947)
+..|||..-+||.||+|||||+-.|.||.|++++|+||.+.....+|+.
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.80 E-value=2.6e-19 Score=216.10 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=118.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCC-CceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGS-GRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds-~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||++. .+++.|+++|..+ .|+.+..|+|+++..+|.++++.|+.++ ++.| |++|.+||.||||+.|++||+
T Consensus 497 LVF~~~~----~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 497 LVICAKA----ATALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred EEEeCcH----HHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEE
Confidence 6899999 9999999999543 2899999999999999999999999854 4544 566799999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
||++|||....|+|||+||+||++.|.||.+++++|++++|++....|+.+...++
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~ 626 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTC 626 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccC
Confidence 99999999999999999999999999999999999999999999999998776664
No 19
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=3.3e-14 Score=128.55 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=91.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+.+. ..+..+.++|... +..+..++|+++..+|..+++.|+.+. ..+|++|.+.|.|+|+..|++||++
T Consensus 32 lvf~~~~----~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~~G~d~~~~~~vi~~ 103 (131)
T cd00079 32 LIFCPSK----KMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIARGIDLPNVSVVINY 103 (131)
T ss_pred EEEeCcH----HHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhhcCcChhhCCEEEEe
Confidence 5888888 8889999999875 889999999999999999999999854 5677789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
+++|++....|++||++|.||...|.+|
T Consensus 104 ~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 104 DLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999888775
No 20
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.45 E-value=2.6e-14 Score=172.83 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=104.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|+||||. ..+|+++..+... ++.+.+..|+ .+-...+..|.. +.|||+.+..||.||||..|-||++.
T Consensus 1225 Ivfsqws----~~ldV~e~~~~~N--~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1225 IVFSQWS----VVLDVKELRYLMN--LIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred EEEEehH----HHHHHHHHHHHhh--hhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhhee
Confidence 6899999 9999999999876 8888776663 344566777754 78999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKT 129 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~ 129 (947)
+|-.||..+.||+||+|||||++++.|||++..+||||.|+.+..-|..
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999998876653
No 21
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.43 E-value=1.7e-13 Score=117.08 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=71.9
Q ss_pred HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccC
Q 047506 19 DFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITL 98 (947)
Q Consensus 19 dfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHR 98 (947)
.+|... |+.+..++|.++..+|..+++.|+.+.. .+|++|.+++.|+|++.+++||+++++|||....|++||++|
T Consensus 1 ~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 1 KFLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEI--RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp HHHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSS--SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCc--eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 367766 9999999999999999999999998544 577778999999999999999999999999999999999999
Q ss_pred CC
Q 047506 99 DP 100 (947)
Q Consensus 99 IG 100 (947)
+|
T Consensus 77 ~g 78 (78)
T PF00271_consen 77 IG 78 (78)
T ss_dssp TT
T ss_pred CC
Confidence 98
No 22
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=1.4e-12 Score=108.89 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=74.6
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhh
Q 047506 16 ILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQR 95 (947)
Q Consensus 16 ILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdR 95 (947)
.|.++|... ++.+..++|.++..+|..+++.|+.+.. .+|++|.+++.|+|+..+++||+++++||+....|++||
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 467788877 8999999999999999999999998543 777889999999999999999999999999999999999
Q ss_pred ccCCC
Q 047506 96 ITLDP 100 (947)
Q Consensus 96 aHRIG 100 (947)
++|+|
T Consensus 78 ~~R~g 82 (82)
T smart00490 78 AGRAG 82 (82)
T ss_pred cccCC
Confidence 99987
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.35 E-value=2.9e-12 Score=151.76 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=100.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCC--------CCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGN--------VLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGs--------ts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt 72 (947)
|||+++. .+.+.|.++|... |+.+.+++|. ++..+|.+++++|..+. .. +|++|.+++.|+|++
T Consensus 369 lIF~~~~----~t~~~L~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~-~~-vLvaT~~~~eGldi~ 440 (773)
T PRK13766 369 IVFTQYR----DTAEKIVDLLEKE--GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE-FN-VLVSTSVAEEGLDIP 440 (773)
T ss_pred EEEeCcH----HHHHHHHHHHHhC--CCceEEEEccccccccCCCCHHHHHHHHHHHHcCC-CC-EEEECChhhcCCCcc
Confidence 6999999 9999999999876 9999999997 88899999999999853 33 566778999999999
Q ss_pred ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCC
Q 047506 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128 (947)
Q Consensus 73 aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl 128 (947)
.+++||+|||+|||....|.+||++|.| ++.||.|++.+|+||.++....+|.
T Consensus 441 ~~~~VI~yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ee~~y~~~~~ke 493 (773)
T PRK13766 441 SVDLVIFYEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKGTRDEAYYWSSRRKE 493 (773)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCCChHHHHHHHhhHHH
Confidence 9999999999999998888555555554 4789999999999999998765554
No 24
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=3e-10 Score=135.31 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=93.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||++. ..++.+...| +.+ .|+|.++..+|.+++++|+.++.+.++++| ++|+.||+|..|++||++
T Consensus 500 LVF~~~~----~~l~~~a~~L-----~~~--~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~ 567 (732)
T TIGR00603 500 IVFSDNV----FALKEYAIKL-----GKP--FIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQI 567 (732)
T ss_pred EEEeCCH----HHHHHHHHHc-----CCc--eEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEe
Confidence 6898888 5555554443 333 489999999999999999976666666665 999999999999999999
Q ss_pred cCCC-CCCchhHHhhhccCCCCcce-----EEEEEEecCCCHHHHHHHH
Q 047506 81 HSDW-SPVNDLRALQRITLDPQLEQ-----IKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 81 DpdW-NPa~DlQAIdRaHRIGQkK~-----V~VyRLVT~nTVEEkIlq~ 123 (947)
++++ ++....|.+||+.|.+..+. .++|.|++++|.|+....+
T Consensus 568 s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 568 SSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred CCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 9987 99999999999999988754 7899999999999988553
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.68 E-value=5.2e-08 Score=108.39 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=89.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|.++..+|..+++.|..+. + -+|++|.+.+.||++...++||.|
T Consensus 259 lVF~~t~----~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~-~-~vLVaTdv~~rGiDip~v~~VI~~ 330 (423)
T PRK04837 259 IIFANTK----HRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGD-L-DILVATDVAARGLHIPAVTHVFNY 330 (423)
T ss_pred EEEECCH----HHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCC-C-cEEEEechhhcCCCccccCEEEEe
Confidence 5888877 8888999999987 999999999999999999999998753 3 366678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~ 113 (947)
|+++++....|.+||++|.|+.-. ++-|++.
T Consensus 331 d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 331 DLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 999999999999999999997654 3444544
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.68 E-value=7.7e-08 Score=108.86 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=90.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|..+|... |+.+..++|.++..+|..+++.|..+. . -+|++|.+.+.||++...++||.|
T Consensus 339 IVF~~s~----~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~-~-~vLvaT~~l~~GIDi~~v~~VI~~ 410 (475)
T PRK01297 339 MVFANRK----DEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGK-I-RVLVATDVAGRGIHIDGISHVINF 410 (475)
T ss_pred EEEeCCH----HHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCC-C-cEEEEccccccCCcccCCCEEEEe
Confidence 6898888 8899999999877 899999999999999999999998753 3 366678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|.++++....|.+||++|.|+.-. ++-|++.+
T Consensus 411 ~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 411 TLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 999999999999999999998643 44445443
No 27
>PTZ00110 helicase; Provisional
Probab=98.67 E-value=1e-07 Score=110.54 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=92.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|...|... |++...++|.++..+|..+++.|..+. . -+|++|.+.+.||++..+++||.|
T Consensus 381 LIF~~t~----~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~-~-~ILVaTdv~~rGIDi~~v~~VI~~ 452 (545)
T PTZ00110 381 LIFVETK----KGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGK-S-PIMIATDVASRGLDVKDVKYVINF 452 (545)
T ss_pred EEEecCh----HHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCC-C-cEEEEcchhhcCCCcccCCEEEEe
Confidence 6899888 8899999999876 999999999999999999999999753 2 357788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|+++++....|.+||++|.|.+-. +|-|++.+
T Consensus 453 d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 453 DFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 999999999999999999998654 45556654
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.66 E-value=8e-08 Score=106.95 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=88.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|..+|... |+....++|.++..+|..+++.|..+. + -+|++|.+.+.||++...++||.|
T Consensus 249 lVF~~s~----~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~-~-~vLVaTd~~~~GiDip~v~~VI~~ 320 (434)
T PRK11192 249 IVFVRTR----ERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGR-V-NVLVATDVAARGIDIDDVSHVINF 320 (434)
T ss_pred EEEeCCh----HHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCC-C-cEEEEccccccCccCCCCCEEEEE
Confidence 5888888 8889999999877 999999999999999999999998743 3 466677999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|+++++....|.+||++|.|..-.+.++
T Consensus 321 d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 321 DMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred CCCCCHHHHhhcccccccCCCCceEEEE
Confidence 9999999999999999999987655544
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=9.3e-08 Score=108.43 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=89.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|+++..+|..+++.|..+. +. +|++|.+.|.||++...++||.|
T Consensus 230 IIF~~s~----~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~-~~-vLVaT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 230 IIYCPSR----KKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDE-IQ-VVVATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred EEEECcH----HHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCC-Cc-EEEEechhhccCCcccceEEEEe
Confidence 5888888 8889999999987 999999999999999999999999643 34 55667899999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
+++.++....|.+||++|.|+...+.+|
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999999999999999999998776655
No 30
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.64 E-value=7.6e-09 Score=122.48 Aligned_cols=61 Identities=34% Similarity=0.630 Sum_probs=58.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPS 68 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~G 68 (947)
|||+||+ .|||||++|+... + .|.||||.....+|+.+|++||. ++..||||+||||||+|
T Consensus 635 l~~~q~~----~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 635 LIFSQMI----HMLDLLEDYLTYE--G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHH----HHHHHhHHHHhcc--C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 5899999 9999999999976 7 99999999999999999999998 99999999999999998
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.60 E-value=1.7e-07 Score=105.48 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=91.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|+++..+|..+++.|.++. .. +|++|.+++.||++...++||.|
T Consensus 246 lVF~~t~----~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~-~~-vLVaTdv~~rGiDi~~v~~VI~~ 317 (460)
T PRK11776 246 VVFCNTK----KECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRS-CS-VLVATDVAARGLDIKALEAVINY 317 (460)
T ss_pred EEEECCH----HHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEEecccccccchhcCCeEEEe
Confidence 5888877 8889999999987 999999999999999999999999753 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|.+.++....|.+||++|.|+. -.+|-|++.+
T Consensus 318 d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 318 ELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred cCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 9999999999999999999986 4456666654
No 32
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.60 E-value=2.4e-07 Score=106.23 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=95.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||..+ ...+.|.+.|... |++...++|.++..+|..+++.|..+ ...|++.+++..|.|+++...|+||++
T Consensus 348 lV~~~~~----~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~ 420 (501)
T PHA02558 348 FVMFKYV----EHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFA 420 (501)
T ss_pred EEEEEEH----HHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEe
Confidence 5788777 7889999999987 89999999999999999999988864 456777777999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcc-eEEEEEEecCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLE-QIKVFRLYSFCT 115 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK-~V~VyRLVT~nT 115 (947)
.|.-+.....|.+||++|.|..| .+.||.++-.-.
T Consensus 421 ~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 421 HPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999998876 599999986433
No 33
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.56 E-value=1.9e-07 Score=108.57 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=87.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+++..+||+++..+|..+++.|..+. ..+|++|.+.|.|||+...+.||.|
T Consensus 228 IIf~~sr----~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~--~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 228 IIYASSR----KKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDD--VKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred EEEECcH----HHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEechhhccCcCCCCCEEEEc
Confidence 5788777 8888899999877 999999999999999999999998754 3567788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
++++++....|.+||++|.|+...+.
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999766554
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.54 E-value=2.9e-07 Score=104.04 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=87.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|..+|... ++....++|.++..+|..+++.|..+. + -+|++|.+.+.||++...++||.|
T Consensus 249 lVF~~t~----~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~-~-~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 249 LVFTRTK----HGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGD-I-RVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred EEEcCcH----HHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCC-C-cEEEEccHHhcCCCcccCCEEEEe
Confidence 5777777 7788899999887 899999999999999999999999753 3 366678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKV 107 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~V 107 (947)
|+++++....|.+||++|.|+.-.+.+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEE
Confidence 999999999999999999998765444
No 35
>PTZ00424 helicase 45; Provisional
Probab=98.53 E-value=3.4e-07 Score=100.02 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... ++....++|+++..+|..+++.|..+. . -+|++|.+.+.|+++...++||+|
T Consensus 271 ivF~~t~----~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~-~-~vLvaT~~l~~GiDip~v~~VI~~ 342 (401)
T PTZ00424 271 IIYCNTR----RKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGS-T-RVLITTDLLARGIDVQQVSLVINY 342 (401)
T ss_pred EEEecCc----HHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCC-C-CEEEEcccccCCcCcccCCEEEEE
Confidence 5777776 7788899999887 899999999999999999999999753 3 466788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
|++.++....|.+||++|.|.. -.+|-|++.+-.+
T Consensus 343 ~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~~~ 377 (401)
T PTZ00424 343 DLPASPENYIHRIGRSGRFGRK--GVAINFVTPDDIE 377 (401)
T ss_pred CCCCCHHHEeecccccccCCCC--ceEEEEEcHHHHH
Confidence 9999999999999999999964 4566677665433
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.52 E-value=3.1e-07 Score=105.71 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=88.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|..+|... .|+.+..++|+++..+|..+++.|..+. .. +|++|.+.+.||++..+++||.|
T Consensus 371 iVFv~s~----~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G~-~~-ILVaTdvl~rGiDip~v~~VI~~ 443 (518)
T PLN00206 371 VVFVSSR----LGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVGE-VP-VIVATGVLGRGVDLLRVRQVIIF 443 (518)
T ss_pred EEEcCCc----hhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEEecHhhccCCcccCCEEEEe
Confidence 5777766 7788888888753 3889999999999999999999999754 33 56778999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++.++....|.+||++|.|..-. ++-|++.+
T Consensus 444 d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 444 DMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred CCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 999999999999999999997543 44455543
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.49 E-value=4.6e-07 Score=106.37 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=87.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|+++..+|..+++.|..+. .. +|++|.+.|.||++...+.||.|
T Consensus 240 IIFc~tr----~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~-~~-VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 240 IIYCNSR----AKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDD-LQ-IVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred EEEECcH----HHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCC-CC-EEEEechhhccCCCCCcCEEEEe
Confidence 5888887 8889999999987 999999999999999999999998753 33 55677899999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKV 107 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~V 107 (947)
|++.++....|.+||++|.|....+.+
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 999999999999999999998755433
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.47 E-value=4.7e-07 Score=105.83 Aligned_cols=99 Identities=12% Similarity=0.206 Sum_probs=87.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|.++|... ++....++|.++..+|..+++.|..+. .-+|++|.+.+.||++...++||.|
T Consensus 261 LVF~nt~----~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~--~~VLVaTdv~arGIDip~V~~VIny 332 (572)
T PRK04537 261 MVFVNTK----AFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQ--LEILVATDVAARGLHIDGVKYVYNY 332 (572)
T ss_pred EEEeCCH----HHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEehhhhcCCCccCCCEEEEc
Confidence 5888777 8888899999887 999999999999999999999998743 3466678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKV 107 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~V 107 (947)
|.+|++....|.+||+.|.|..-.+..
T Consensus 333 d~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 333 DLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred CCCCCHHHHhhhhcccccCCCCceEEE
Confidence 999999999999999999998754443
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.32 E-value=1.8e-06 Score=107.16 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=89.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... .-.+.+..+|... |+....|+|+++..+|..++++|..+. +. +|+.|.|.|.||++...+.||.|
T Consensus 684 IIYC~SR----ke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Ge-i~-VLVATdAFGMGIDkPDVR~VIHy 755 (1195)
T PLN03137 684 IIYCLSR----MDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDE-IN-IICATVAFGMGINKPDVRFVIHH 755 (1195)
T ss_pred eeEeCch----hHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCC-Cc-EEEEechhhcCCCccCCcEEEEc
Confidence 6888777 7788899999887 999999999999999999999998853 33 55667999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyR 109 (947)
+.+-++....|.+|||+|.|+.-.+..|.
T Consensus 756 dlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 756 SLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999986655544
No 40
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.30 E-value=4.5e-06 Score=96.05 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=97.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcE-EEEeC--------CCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSY-ERVDG--------NVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKL 71 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y-~RLDG--------sts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNL 71 (947)
|||+||. ...+.|-+||... |+.. .||-| +|+..+...+|+.|..+. +. .|++|-.|-.||.+
T Consensus 370 IVFT~yR----dTae~i~~~L~~~--~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge-~n-VLVaTSVgEEGLDI 441 (542)
T COG1111 370 IVFTEYR----DTAEEIVNFLKKI--GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE-YN-VLVATSVGEEGLDI 441 (542)
T ss_pred EEEehhH----hHHHHHHHHHHhc--CCcceeEEeeccccccccccCHHHHHHHHHHHhcCC-ce-EEEEcccccccCCC
Confidence 6899999 8899999999987 4444 47766 588888999999999853 33 55677899999999
Q ss_pred CccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCC
Q 047506 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128 (947)
Q Consensus 72 taAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl 128 (947)
...|-||||||-=. +...|.|-+|-|.++.=+||-|+++||-||--+..+.+|.
T Consensus 442 p~vDlVifYEpvpS---eIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~~s~rke 495 (542)
T COG1111 442 PEVDLVIFYEPVPS---EIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYYSSRRKE 495 (542)
T ss_pred CcccEEEEecCCcH---HHHHHHhhCccccCCCCeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999944 4566667777777799999999999999999999887765
No 41
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.29 E-value=2.2e-06 Score=101.58 Aligned_cols=100 Identities=8% Similarity=0.192 Sum_probs=87.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+-|..+|..+ |+....++|.++..+|..++++|..+. .-+|++|...+.||++...++||.|
T Consensus 249 IVF~~tk----~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~--~~ILVATdv~arGIDip~V~~VI~~ 320 (629)
T PRK11634 249 IIFVRTK----NATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGR--LDILIATDVAARGLDVERISLVVNY 320 (629)
T ss_pred EEEeccH----HHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCC--CCEEEEcchHhcCCCcccCCEEEEe
Confidence 5787776 7888888999987 999999999999999999999998743 3477788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|.+.++....|.+||+.|.|..-.+.+|
T Consensus 321 d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 321 DIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 9999999999999999999986544433
No 42
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.2e-06 Score=96.85 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=95.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|...|..+ |++...|+|+++..+|.++++.|.++ ... +|+.|..++-||.+...++||.|
T Consensus 277 IVF~~tk----~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~-vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 277 IVFVRTK----RLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDG-ELR-VLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcC-CCC-EEEEechhhccCCccccceeEEc
Confidence 5788877 8899999999988 99999999999999999999999964 334 55566999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~ 126 (947)
|.+.+|....+.+||.+|.| +.=..+-|++. .-|...+....+
T Consensus 349 D~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred cCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHH
Confidence 99999999999999999999 44467777776 224444444433
No 43
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.22 E-value=6.8e-06 Score=88.92 Aligned_cols=117 Identities=7% Similarity=0.074 Sum_probs=87.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH----HHhhhcCCCceEEEEecccCcCccCCCccce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAA----LQNFNNGSGRFVFLLETRACRPSIKLSSVHA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~a----Id~FN~ds~~fVFLLSTrAGG~GLNLtaAdt 76 (947)
|||+... ...+.+..+|........+..++|+++..+|.+. ++.|..+. ..+|++|.+.+.|+++ .+++
T Consensus 226 lVf~~t~----~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~--~~ilvaT~~~~~GiDi-~~~~ 298 (358)
T TIGR01587 226 AIIVNTV----DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE--KFVIVATQVIEASLDI-SADV 298 (358)
T ss_pred EEEECCH----HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC--CeEEEECcchhceecc-CCCE
Confidence 5788777 7778888888876333469999999999999764 78887632 3467788999999999 5899
Q ss_pred eEEecCCCCCCchhHHhhhccCCCCcc----eEEEEEEecCC---CHHHHHHHHHHh
Q 047506 77 VIIFHSDWSPVNDLRALQRITLDPQLE----QIKVFRLYSFC---TVEEKVLILAKQ 126 (947)
Q Consensus 77 VIifDpdWNPa~DlQAIdRaHRIGQkK----~V~VyRLVT~n---TVEEkIlq~ak~ 126 (947)
||.++.+ +....|.+||++|.|... .|+||.....+ ..+.+++++-..
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~ 353 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQ 353 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHH
Confidence 9887654 667789999999999864 57777766544 455555554433
No 44
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.19 E-value=4.5e-06 Score=96.83 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=87.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...|-|+.+|+.. +++..-|||..+..+|..+++.|..+. +-+|+.|..++-||.+...++||.|
T Consensus 345 IIFc~tk----r~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~--~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 345 IIFCETK----RTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGK--SPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred EEEecch----hhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCC--cceEEEcccccccCCCccccEEEeC
Confidence 6899999 9999999999987 899999999999999999999998754 4577788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQI 105 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V 105 (947)
|++-|.....+.+||.+|-|++=..
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceE
Confidence 9999999999999999997776443
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=9.9e-06 Score=91.08 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=94.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||..- ..-+.+.-+|+.. |+....++|.++...|-.+++.|+.+. +-+|++|..|.-||..+.+|+||.|
T Consensus 304 iVF~~t~----~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~--r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 304 IVFCNTC----NTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGA--RSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred EEEEecc----chHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccC--CcEEEecchhcccCCCCCceEEEec
Confidence 5787776 6677888888877 999999999999999999999998853 4577889999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
|-+-+-....+..||+.|-| +.=.+..||+.--||
T Consensus 376 DiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 376 DIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred CCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999 778888999984443
No 46
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.9e-05 Score=86.18 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=92.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+|||.-. .-.|.|.+-++.. .+....++|.++.++|.++++.|..+.. -.|++|..-+-|+..+..+.||.|
T Consensus 270 vIFcnTk----~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~S--rvLitTDVwaRGiDv~qVslviNY 341 (400)
T KOG0328|consen 270 VIFCNTK----RKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKS--RVLITTDVWARGIDVQQVSLVINY 341 (400)
T ss_pred EEEeccc----chhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCc--eEEEEechhhccCCcceeEEEEec
Confidence 4777776 7889999999987 8999999999999999999999998432 367789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
|.+-|+....+.|||.+|.|.+- .+.+|+...-+
T Consensus 342 DLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 342 DLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred CCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 99999999999999999999854 45677765544
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.99 E-value=2e-05 Score=95.06 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=92.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC------CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG------SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~------Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaA 74 (947)
|||+... ...+.|..+|...+. +.....++|+++.++|..+.++|.++. .-+|++|.+.+.||++...
T Consensus 275 IVF~~sr----~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~--i~vLVaTd~lerGIDI~~v 348 (742)
T TIGR03817 275 LTFVRSR----RGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE--LLGVATTNALELGVDISGL 348 (742)
T ss_pred EEEcCCH----HHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC--ceEEEECchHhccCCcccc
Confidence 5788777 777777777665321 356778999999999999999998753 3467889999999999999
Q ss_pred ceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 75 dtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
|+||+||.+-+.....|.+||++|.|+.-. ++-++..+..|...+.
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999999999999999999998654 4445555667776555
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.95 E-value=3e-05 Score=95.70 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=84.7
Q ss_pred EEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEec
Q 047506 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFH 81 (947)
Q Consensus 2 IFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifD 81 (947)
||+... ...+.+.+.|...++++++..+||.++..+|..++.+|..+. .-+|++|...+.|+++..+++||+++
T Consensus 665 if~n~i----~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk--~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 665 YVHNRI----ESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE--FQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred EEECCc----HHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC--CCEEEECChhhcccccccCCEEEEec
Confidence 566555 667788888888778899999999999999999999999753 34677889999999999999999999
Q ss_pred CCC-CCCchhHHhhhccCCCCcceEEEEEEecC
Q 047506 82 SDW-SPVNDLRALQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 82 pdW-NPa~DlQAIdRaHRIGQkK~V~VyRLVT~ 113 (947)
.+. ......|.+||++|.|+.- ++|-|+..
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 864 4456679999999998754 44555543
No 49
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.94 E-value=3.3e-05 Score=88.03 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=100.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||++.. ...+.+...|... |+ ...++|.++..+|..++++|..+. ...|.+++.+..|+++..|+++|+.
T Consensus 287 lif~~~~----~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~~i~~ 357 (442)
T COG1061 287 LIFASDV----EHAYEIAKLFLAP--GI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADVLIIL 357 (442)
T ss_pred EEEeccH----HHHHHHHHHhcCC--Cc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcEEEEe
Confidence 5788888 7777777777754 66 889999999999999999999855 5677788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccC-CCCcce--EEEEEEecCCCHHHHHHHHHHh
Q 047506 81 HSDWSPVNDLRALQRITL-DPQLEQ--IKVFRLYSFCTVEEKVLILAKQ 126 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHR-IGQkK~--V~VyRLVT~nTVEEkIlq~ak~ 126 (947)
.|.=+|....|.+||+.| ...++. +..|-++...+.++.+......
T Consensus 358 ~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 358 RPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999999 455554 8888899999999988765543
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.91 E-value=5.4e-05 Score=92.89 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=84.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC----CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG----SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~----Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdt 76 (947)
|||+... ...+.+...|...++ +..+..++|+++..+|..+.+.|.++. . -+|++|.+.+.||++...|+
T Consensus 288 LVF~nTr----~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~-i-~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 288 LIFTNTR----SGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE-L-KVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred EEEeCCH----HHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC-C-eEEEECChHHhcCCCCCCcE
Confidence 5788777 667777777766432 467889999999999999999998864 3 46667889999999999999
Q ss_pred eEEecCCCCCCchhHHhhhccCC-CCcceEEEEEE
Q 047506 77 VIIFHSDWSPVNDLRALQRITLD-PQLEQIKVFRL 110 (947)
Q Consensus 77 VIifDpdWNPa~DlQAIdRaHRI-GQkK~V~VyRL 110 (947)
||.|+++.++....|.+||++|- |+...-.|+-+
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999875 55555555543
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.91 E-value=4.1e-05 Score=96.32 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=82.4
Q ss_pred EEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEec
Q 047506 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFH 81 (947)
Q Consensus 2 IFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifD 81 (947)
||+... ..++.+.+.|...++++.+..+||.++..+|.+++.+|.++. . -+|++|...+.||++..+++||+.+
T Consensus 814 vf~n~i----~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk-~-~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 814 YLYNDV----ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-F-NVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred EEECCH----HHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC-C-CEEEECchhhcccccccCCEEEEec
Confidence 455444 567778888888788899999999999999999999999853 3 3566778999999999999999998
Q ss_pred CC-CCCCchhHHhhhccCCCCcceEE
Q 047506 82 SD-WSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 82 pd-WNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
++ |......|.+||++|.|++-.++
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEE
Confidence 86 67777889999999999865443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.78 E-value=9.8e-05 Score=87.49 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-CCCchhHHhh
Q 047506 16 ILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-SPVNDLRALQ 94 (947)
Q Consensus 16 ILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-NPa~DlQAId 94 (947)
-+.+.|...|+++.+..++|+++..+|..++++|.++. . -+|++|.+.+.|+|+..++.||+++++. .-..-.|.+|
T Consensus 471 ~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-~-~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~G 548 (630)
T TIGR00643 471 ALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE-V-DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRG 548 (630)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC-C-CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhh
Confidence 34455555567889999999999999999999999753 3 4666778999999999999999999885 5566679999
Q ss_pred hccCCCCcceEE
Q 047506 95 RITLDPQLEQIK 106 (947)
Q Consensus 95 RaHRIGQkK~V~ 106 (947)
|++|-|+.-.+.
T Consensus 549 RvGR~g~~g~~i 560 (630)
T TIGR00643 549 RVGRGDHQSYCL 560 (630)
T ss_pred hcccCCCCcEEE
Confidence 999999765444
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.75 E-value=0.00012 Score=87.59 Aligned_cols=90 Identities=11% Similarity=0.144 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-CCCchhHHh
Q 047506 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-SPVNDLRAL 93 (947)
Q Consensus 15 DILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-NPa~DlQAI 93 (947)
.-+.++|...|+++++..+||+++..+|..++++|..+. .-+|++|.+.+.|+++..++.||+++++. ....-.|.+
T Consensus 493 ~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~--~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~ 570 (681)
T PRK10917 493 EETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE--IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 570 (681)
T ss_pred HHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHh
Confidence 344566666676789999999999999999999999753 34667888999999999999999999985 456666999
Q ss_pred hhccCCCCcceEE
Q 047506 94 QRITLDPQLEQIK 106 (947)
Q Consensus 94 dRaHRIGQkK~V~ 106 (947)
||++|-|..-.+.
T Consensus 571 GRvGR~g~~g~~i 583 (681)
T PRK10917 571 GRVGRGAAQSYCV 583 (681)
T ss_pred hcccCCCCceEEE
Confidence 9999999754443
No 54
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=97.72 E-value=9.3e-05 Score=85.88 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=84.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||--.. .-.|.|.+-|... |+.+++|||+-+.++|..++..|..+.. . +|+.|.++|-||.....++||.|
T Consensus 521 IIFvN~k----k~~d~lAk~LeK~--g~~~~tlHg~k~qeQRe~aL~~fr~~t~-d-IlVaTDvAgRGIDIpnVSlViny 592 (673)
T KOG0333|consen 521 IIFVNTK----KGADALAKILEKA--GYKVTTLHGGKSQEQRENALADFREGTG-D-ILVATDVAGRGIDIPNVSLVINY 592 (673)
T ss_pred EEEEech----hhHHHHHHHHhhc--cceEEEeeCCccHHHHHHHHHHHHhcCC-C-EEEEecccccCCCCCccceeeec
Confidence 3565555 7789999999988 9999999999999999999999998422 2 45567999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
|..=+-....+.|||.+|-||.-.+.
T Consensus 593 dmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 593 DMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred chhhhHHHHHHHhccccccccCceeE
Confidence 99988888899999999999976543
No 55
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.72 E-value=0.00011 Score=79.96 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHhhhcCCCceEEEEecccCcCccCCCccc--------eeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCC
Q 047506 44 AALQNFNNGSGRFVFLLETRACRPSIKLSSVH--------AVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 44 ~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAd--------tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
...+.|+++. ..|+++| +||+.||.|++-- .-|+++++|+.....|-+||+||-||..+..+.-+++.-.
T Consensus 52 ~e~~~F~~g~-k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 4566898864 4566665 9999999999642 2388999999999999999999999999866666667777
Q ss_pred HHHHHHHHHHhCCC
Q 047506 116 VEEKVLILAKQDKT 129 (947)
Q Consensus 116 VEEkIlq~ak~Kl~ 129 (947)
.|.+......+|+.
T Consensus 130 gE~Rfas~va~rL~ 143 (278)
T PF13871_consen 130 GERRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888777774
No 56
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.72 E-value=9.1e-05 Score=83.30 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=86.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||+-. .....|...|+.. |.....++|.+...+|.++|++|..+. .-.|++|..++-||.....+.||.|
T Consensus 334 iIFc~tk----~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~--~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 334 IIFCHTK----ATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGK--EKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred EEEEeeh----hhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCc--ceEEEEechhhcccccceEEEEEec
Confidence 6899988 7888889999988 999999999999999999999999853 3477789999999999999999999
Q ss_pred cCCC------CCCchhHHhhhccCCCCcceEEEEEEec
Q 047506 81 HSDW------SPVNDLRALQRITLDPQLEQIKVFRLYS 112 (947)
Q Consensus 81 DpdW------NPa~DlQAIdRaHRIGQkK~V~VyRLVT 112 (947)
|.+- .|...++.|||++|.|-+- .++.|+-
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG--~a~n~v~ 441 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKG--LAINLVD 441 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccc--eEEEeec
Confidence 9874 3567789999999999754 3344553
No 57
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=85.44 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEE
Q 047506 27 SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 27 Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
+.+|.|++|+|..++|+.+...|.... .++|++|..++-||.|....-||-||+++.|+..++.+||.-|+|-+-.-.
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~--~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSR--RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhcccc--ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 468999999999999999999998743 348889999999999999999999999999999999999999999986544
Q ss_pred EEEEecCCCHHHHHHHHHHhCC
Q 047506 107 VFRLYSFCTVEEKVLILAKQDK 128 (947)
Q Consensus 107 VyRLVT~nTVEEkIlq~ak~Kl 128 (947)
.| +++.-.| .+..++.+.
T Consensus 549 Lf--L~P~Eae--y~~~l~~~~ 566 (708)
T KOG0348|consen 549 LF--LLPSEAE--YVNYLKKHH 566 (708)
T ss_pred EE--ecccHHH--HHHHHHhhc
Confidence 43 3444333 444444443
No 58
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.60 E-value=0.00016 Score=83.46 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=88.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||..-. .+.|.++.+|... +++|..|+|.....+|.++++.|..+.-. .|+.|..+.-||+.....|||+|
T Consensus 341 lvFvEt~----~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~~p--vlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 341 LVFVETK----RGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGKAP--VLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred EEEeecc----chhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCCcc--eEEEehhhhcCCCCCCCceeEEe
Confidence 4677777 9999999999988 99999999999999999999999986433 55567888999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyR 109 (947)
|.+=+-..+.+.|||.+|.|+.=..+.|-
T Consensus 413 DmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 413 DMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred ecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99998888889999999999986655543
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0004 Score=82.27 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=89.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+-+..+|... |+....|+|++...+|...-++|..+. . .+++.|-|-|.|||=...-.||-|
T Consensus 234 IIYc~sR----k~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~-~-~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 234 IIYCLTR----KKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDE-I-KVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred EEEEeeH----HhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEeccccCccCCCCceEEEEe
Confidence 4677666 8889999999988 999999999999999999999999754 3 355567999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyR 109 (947)
|.+=+.....|-+|||+|-|..-.+..+.
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 99999999999999999999977665544
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.52 E-value=0.00025 Score=86.84 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=78.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHH-----HHHHhhhc----CC-----CceEEEEecccCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKK-----AALQNFNN----GS-----GRFVFLLETRACR 66 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq-----~aId~FN~----ds-----~~fVFLLSTrAGG 66 (947)
|||+... ...+.|...|... ++ ..|+|.++..+|. .++++|.. +. ....+|++|.+..
T Consensus 276 LVF~NTv----~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 276 LVFCRTV----KHVRKVFAKLPKE--KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred EEEECCH----HHHHHHHHHHHhc--CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 5788777 7788888888866 54 8999999999999 78899975 22 1246789999999
Q ss_pred CccCCCccceeEEecCCCCCCchhHHhhhccCCCCcce--EEEEEE
Q 047506 67 PSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQ--IKVFRL 110 (947)
Q Consensus 67 ~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~--V~VyRL 110 (947)
.||++.. ++||.+..++ ....|.+||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999877664 577899999999999633 555544
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.00035 Score=85.19 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=88.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCC---Cccc--
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKL---SSVH-- 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNL---taAd-- 75 (947)
|||+... ...+.+...|... |+++..|+|.+...+|......|..+ -++++|..+|-|+.+ ....
T Consensus 432 LIf~~t~----~~se~l~~~L~~~--gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIATdmAgRG~DI~l~~~V~~~ 501 (790)
T PRK09200 432 LIGTGSI----EQSETFSKLLDEA--GIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVATNMAGRGTDIKLGEGVHEL 501 (790)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCEEEecCCccHHHHHHHHHcCCCC----eEEEEccchhcCcCCCcccccccc
Confidence 6888888 8899999999988 99999999999888877776666543 366788999999999 4666
Q ss_pred ---eeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHH
Q 047506 76 ---AVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 76 ---tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ 123 (947)
+||.||.+=|+..+.|..||++|.|+.=.... |+ |.|+.++.+
T Consensus 502 GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 502 GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999999999999999999999754432 22 457766643
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.43 E-value=0.00048 Score=82.59 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=85.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC---ccc--
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS---SVH-- 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt---aAd-- 75 (947)
|||+... ...+.|...|... |+++..|+|... +|.+.+..|...+. -++++|..+|-|+.+. ...
T Consensus 477 LIft~t~----~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~ 546 (656)
T PRK12898 477 LVGTRSV----AASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAAR 546 (656)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhc
Confidence 6888888 8899999999987 999999999864 55566666654332 2677889999999887 333
Q ss_pred ---eeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH
Q 047506 76 ---AVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 76 ---tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
+||.||.+=++..+.|.+||++|.|..=.+. -|+ |.|+.++..-
T Consensus 547 GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~~ 593 (656)
T PRK12898 547 GGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQSF 593 (656)
T ss_pred CCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHhh
Confidence 9999999999999999999999999864432 333 4577777643
No 63
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.38 E-value=0.001 Score=79.64 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=82.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|.++|... |+++..++|.++..+|..++..|..+. ..+|++|...+.|+.+..++.||++
T Consensus 450 iIf~~t~----~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~vlV~t~~L~rGfdlp~v~lVii~ 521 (652)
T PRK05298 450 LVTTLTK----RMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGINLLREGLDIPEVSLVAIL 521 (652)
T ss_pred EEEeCCH----HHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCC--ceEEEEeCHHhCCccccCCcEEEEe
Confidence 4677666 8889999999977 999999999999999999999998643 3456677899999999999999999
Q ss_pred cCC-----CCCCchhHHhhhccCCCCcceEEEEEEecC
Q 047506 81 HSD-----WSPVNDLRALQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 81 Dpd-----WNPa~DlQAIdRaHRIGQkK~V~VyRLVT~ 113 (947)
|.+ =++....|.+||++|-. .=.++-|+..
T Consensus 522 d~eifG~~~~~~~yiqr~GR~gR~~---~G~~i~~~~~ 556 (652)
T PRK05298 522 DADKEGFLRSERSLIQTIGRAARNV---NGKVILYADK 556 (652)
T ss_pred CCcccccCCCHHHHHHHhccccCCC---CCEEEEEecC
Confidence 975 26667789999999942 3345555553
No 64
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.34 E-value=0.00099 Score=79.96 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=82.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|.++|... |+++..++|.++..+|..++..|..+. ..+|++|...+.|+.+..++.||++
T Consensus 446 LIf~~tk----~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~VLV~t~~L~rGfDiP~v~lVvi~ 517 (655)
T TIGR00631 446 LVTTLTK----KMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGE--FDVLVGINLLREGLDLPEVSLVAIL 517 (655)
T ss_pred EEEECCH----HHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCC--ceEEEEcChhcCCeeeCCCcEEEEe
Confidence 4666666 8899999999987 999999999999999999999997643 4566677899999999999999999
Q ss_pred cCCC-----CCCchhHHhhhccCCCCcceEEEEEEecCCC
Q 047506 81 HSDW-----SPVNDLRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 81 DpdW-----NPa~DlQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
|.+. +.....|.+||++|.+.- .|+-++...|
T Consensus 518 DadifG~p~~~~~~iqriGRagR~~~G---~vi~~~~~~~ 554 (655)
T TIGR00631 518 DADKEGFLRSERSLIQTIGRAARNVNG---KVIMYADKIT 554 (655)
T ss_pred CcccccCCCCHHHHHHHhcCCCCCCCC---EEEEEEcCCC
Confidence 9653 444566999999997432 3444444433
No 65
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=97.28 E-value=0.00063 Score=74.69 Aligned_cols=121 Identities=13% Similarity=0.182 Sum_probs=70.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH------------Hhhhc--CCCceEEEEecccCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAAL------------QNFNN--GSGRFVFLLETRACR 66 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aI------------d~FN~--ds~~fVFLLSTrAGG 66 (947)
||.++.. ..+|+||.||... ++.|.|++|....++....- ..... .....++|+++.-.-
T Consensus 121 lIv~~~~----k~ldllE~~llGk--~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~ 194 (297)
T PF11496_consen 121 LIVSRSG----KELDLLEGLLLGK--KLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLY 194 (297)
T ss_dssp EEEE-ST----HHHHHHHHHHTTS--SSEEEESSS--S--S---S----------------------SEEEEEEESS---
T ss_pred EEEecCc----cHHHHHHHHHccC--CeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCcccc
Confidence 4667777 9999999999976 99999999987766655433 11111 346778888876443
Q ss_pred C----ccCCCccceeEEecCCCCCCchh-HHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCC
Q 047506 67 P----SIKLSSVHAVIIFHSDWSPVNDL-RALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKT 129 (947)
Q Consensus 67 ~----GLNLtaAdtVIifDpdWNPa~Dl-QAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~ 129 (947)
. .++-...|.||-||+.+++..+. |.+-..+|-+ +.+-|+||+..+|+|.-++........
T Consensus 195 ~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~~~~~~ 260 (297)
T PF11496_consen 195 NNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFPKSSSR 260 (297)
T ss_dssp TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHTTTST-
T ss_pred ccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHccCccch
Confidence 3 24556789999999999998876 4444444444 899999999999999998877655433
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.24 E-value=0.00088 Score=82.20 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=83.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRF-GSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf-~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||.... ..++.+..+|..++ .++..+.++|+++..+|.++++.|..+ ..-+|++|..+..||++...++||-
T Consensus 213 LVFlpg~----~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G--~rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 213 LVFLPGQ----AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG--RRKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred EEEECCH----HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC--CeEEEEecchHhhcccccCceEEEE
Confidence 5777666 55666677776533 378899999999999999999999764 2345678899999999999999999
Q ss_pred ecCC----CCCCchh-----------HHhhhccCCCCcceEEEEEEecCCCH
Q 047506 80 FHSD----WSPVNDL-----------RALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 80 fDpd----WNPa~Dl-----------QAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
++.. |||..-. +|+.|++|-|-.++=.+|||+++...
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQH 338 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHH
Confidence 9864 6776522 35555555555678889999987543
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.21 E-value=0.0012 Score=79.99 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=82.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCc-------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSS------- 73 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLta------- 73 (947)
|||+.+. ...+.|..+|..+ |+++..|+|. ..+|.+.|..|...+ . .++++|..+|-|+.+..
T Consensus 409 LV~t~si----~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~-g-~VtIATnmAgRGtDI~l~~V~~~G 478 (745)
T TIGR00963 409 LVGTTSV----EKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRK-G-AVTIATNMAGRGTDIKLEEVKELG 478 (745)
T ss_pred EEEeCcH----HHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCC-c-eEEEEeccccCCcCCCccchhhcC
Confidence 6888888 8899999999988 9999999998 778999999997643 2 35566788888887776
Q ss_pred cceeEEecCCCCCCchhHHhhhccCCCCcceEE
Q 047506 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 74 AdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
.-+||.++.+=++..+.|.+||++|.|+.=...
T Consensus 479 Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 479 GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred CcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 679999999999999999999999999975443
No 68
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.17 E-value=0.0013 Score=75.99 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=80.7
Q ss_pred ecCChh-hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC
Q 047506 6 CSIGGG-SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84 (947)
Q Consensus 6 ft~gst-~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW 84 (947)
.+|.+- ....+++.++. .+++..+||.++...|.+++..|.+.+. -.|++|..++-||.....|.||-|||+-
T Consensus 263 ~TCasVeYf~~~~~~~l~----~~~i~~iHGK~~q~~R~k~~~~F~~~~~--~vl~~TDVaARGlDip~iD~VvQ~DpP~ 336 (567)
T KOG0345|consen 263 PTCASVEYFGKLFSRLLK----KREIFSIHGKMSQKARAKVLEAFRKLSN--GVLFCTDVAARGLDIPGIDLVVQFDPPK 336 (567)
T ss_pred cCcchHHHHHHHHHHHhC----CCcEEEecchhcchhHHHHHHHHHhccC--ceEEeehhhhccCCCCCceEEEecCCCC
Confidence 444444 55566666644 6799999999999999999999998332 3667889999999999999999999999
Q ss_pred CCCchhHHhhhccCCCCcceEEEEE
Q 047506 85 SPVNDLRALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 85 NPa~DlQAIdRaHRIGQkK~V~VyR 109 (947)
+|..-.+..||..|.|..-.-.||=
T Consensus 337 ~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 337 DPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred ChhHHHhhcchhhhccCccceEEEe
Confidence 9999999999999999876555543
No 69
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=97.15 E-value=0.00073 Score=76.56 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=81.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+.-. .-.|-|-+||--. |+..+.|+|+-..++|..+|+.|..+.. -.|.-|..+.-||..+.-.|||.|
T Consensus 425 LIFaEkK----~DVD~IhEYLLlK--GVEavaIHGGKDQedR~~ai~afr~gkK--DVLVATDVASKGLDFp~iqHVINy 496 (610)
T KOG0341|consen 425 LIFAEKK----ADVDDIHEYLLLK--GVEAVAIHGGKDQEDRHYAIEAFRAGKK--DVLVATDVASKGLDFPDIQHVINY 496 (610)
T ss_pred EEEeccc----cChHHHHHHHHHc--cceeEEeecCcchhHHHHHHHHHhcCCC--ceEEEecchhccCCCccchhhccC
Confidence 5777776 6678889999866 9999999999999999999999998543 255567999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcc
Q 047506 81 HSDWSPVNDLRALQRITLDPQLE 103 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK 103 (947)
|.+-.-.+..+.|||.+|-|.+-
T Consensus 497 DMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 497 DMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred CChHHHHHHHHHhcccCCCCCcc
Confidence 99887778889999999988764
No 70
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0013 Score=74.25 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=89.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||+-.. .-++.|.+.|..+ ++...-++|.+...+|..+++.|+.++. -+|++|.-.+-||+++..+-||+|
T Consensus 267 ~if~nt~----r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gss--rvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 267 VIFCNTR----RKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSS--RVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred eEEecch----hhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCc--eEEeeccccccccchhhcceeeee
Confidence 4666666 7788888999766 9999999999999999999999998653 366788888999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
|.+=|+.+....+||++|.|-+ -.+..+++..++
T Consensus 339 dlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d~ 372 (397)
T KOG0327|consen 339 DLPARKENYIHRIGRAGRFGRK--GVAINFVTEEDV 372 (397)
T ss_pred ccccchhhhhhhcccccccCCC--ceeeeeehHhhH
Confidence 9999999999999999999974 455566666544
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.13 E-value=0.0011 Score=81.33 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=85.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRF-GSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf-~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||.-.. .-++.+.+.|...+ .++.+..++|+++..+|.+++..|..+ ..-+|++|..+..||++...++||-
T Consensus 216 LVFlpg~----~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G--~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 216 LLFLPGV----GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG--RRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred EEEcCCH----HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC--CeEEEEecchHHhcccccCceEEEE
Confidence 4676555 55666667776522 378899999999999999999988654 3457778899999999999999999
Q ss_pred ecCC----CCCCch-----------hHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 80 FHSD----WSPVND-----------LRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 80 fDpd----WNPa~D-----------lQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
++.. |+|..- .+|+.|++|-|-..+=.+|||+++...+
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAE 342 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHh
Confidence 7754 666543 2567777777777899999999987553
No 72
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=97.13 E-value=0.0052 Score=72.37 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+.+- .-...+-..+....+|++..-++|+++...|..+..+|.... .++|.+|..++-||...+.|.||-|
T Consensus 317 iVF~Ssc----Kqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLDFpaVdwViQ~ 390 (758)
T KOG0343|consen 317 IVFLSSC----KQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLDFPAVDWVIQV 390 (758)
T ss_pred EEEEehh----hHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhhhccCCCcccceEEEe
Confidence 3555444 334444444444458999999999999999999999998743 4788889999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl 128 (947)
|.+=+-....+..||.-|++-.-...+|- .-+=+|.++.....|.
T Consensus 391 DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 391 DCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLKKLQKKK 435 (758)
T ss_pred cCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHHHHHHcC
Confidence 99999999999999999998877666543 3455688888776665
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.12 E-value=0.0021 Score=77.62 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=81.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||.-.. .-.+.+...|...++++.+..++|+++.. .+.+++|... +..-+|++|..+..||++...++||-+
T Consensus 399 LVFlpg~----~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~-gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 399 IVFVASV----SQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSS-KNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred EEEECcH----HHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhcc-CceeEEeccChhhccccccCeeEEEEC
Confidence 4666555 66777788887654578999999999864 5667887532 234567788999999999999999988
Q ss_pred cCCCCCC---------chhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 81 HSDWSPV---------NDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 81 DpdWNPa---------~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
+....|. ...+++.|++|-|..++=.+|||+++....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK 517 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH
Confidence 7333332 334566666666666789999999988753
No 74
>PRK02362 ski2-like helicase; Provisional
Probab=97.09 E-value=0.0022 Score=77.50 Aligned_cols=82 Identities=7% Similarity=-0.008 Sum_probs=63.4
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ecC-----CCCCCchhHHhhhccCC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FHS-----DWSPVNDLRALQRITLD 99 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fDp-----dWNPa~DlQAIdRaHRI 99 (947)
.+..++|+++..+|..+.+.|..+. + -+|++|.+.+.|+|+.+...||. ||+ +.++....|.+|||+|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~-i-~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRL-I-KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCC-C-eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 4677899999999999999998753 3 45667788999999988766664 663 45666788999999999
Q ss_pred CCcceEEEEEEec
Q 047506 100 PQLEQIKVFRLYS 112 (947)
Q Consensus 100 GQkK~V~VyRLVT 112 (947)
|....=.++-+..
T Consensus 383 g~d~~G~~ii~~~ 395 (737)
T PRK02362 383 GLDPYGEAVLLAK 395 (737)
T ss_pred CCCCCceEEEEec
Confidence 9876544554543
No 75
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.08 E-value=0.0017 Score=83.84 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCC-CCcceEEEE
Q 047506 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLD-PQLEQIKVF 108 (947)
Q Consensus 30 y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRI-GQkK~V~Vy 108 (947)
...+||+++.++|..+.+.|.++. . -+|++|.+...||++...|.||.|+++.+....+|.+||++|- |..-...+|
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~-L-rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGE-L-RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCC-c-eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 356789999999999999999864 3 4666789999999999999999999999999999999999874 433333333
No 76
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.04 E-value=0.00046 Score=76.71 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||-++ .-.++|+.-.... |+++..++..|..+.|.++...|.++. |+.++ .|.----|+..++.|.||.|
T Consensus 326 IIFCNS~----~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~-crnLV-ctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326|consen 326 IIFCNST----NRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGK-CRNLV-CTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred EEEeccc----hHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccc-cceee-ehhhhhcccccceeeEEEec
Confidence 5888888 8899999999988 999999999999999999999999863 44444 56888999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEec
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYS 112 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT 112 (947)
|-+-|+...++.|||.+|.|-. =....|++
T Consensus 398 Dfpk~aEtYLHRIGRsGRFGhl--GlAInLit 427 (459)
T KOG0326|consen 398 DFPKNAETYLHRIGRSGRFGHL--GLAINLIT 427 (459)
T ss_pred CCCCCHHHHHHHccCCccCCCc--ceEEEEEe
Confidence 9999999999999999999974 34556664
No 77
>PRK01172 ski2-like helicase; Provisional
Probab=97.00 E-value=0.0024 Score=76.14 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=58.9
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC---------CCCCchhHHhhhccCCC
Q 047506 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD---------WSPVNDLRALQRITLDP 100 (947)
Q Consensus 30 y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd---------WNPa~DlQAIdRaHRIG 100 (947)
+..++|+++..+|..+.+.|.++ .+. +|++|.+.+.|+|+.+ .+||++|.. +.+..-.|.+|||+|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g-~i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNR-YIK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcC-CCe-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 56679999999999999999875 344 5667799999999985 788887753 23445569999999999
Q ss_pred Ccce--EEEE
Q 047506 101 QLEQ--IKVF 108 (947)
Q Consensus 101 QkK~--V~Vy 108 (947)
.... +.||
T Consensus 365 ~d~~g~~~i~ 374 (674)
T PRK01172 365 YDQYGIGYIY 374 (674)
T ss_pred CCCcceEEEE
Confidence 7655 4444
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.00 E-value=0.001 Score=78.99 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=83.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||-.. .=.+-+.++|... |+.+..|.|.|...+|..+++.+..- ..-+|++|.-.+-||.-..+|-||.+
T Consensus 276 lVF~~~~----sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f--~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 276 LVFCDQI----SRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAF--RVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred Hhhhhhh----hhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhc--eEEEEEecchhhccCCccccceEEec
Confidence 4666555 5578899999988 99999999999999999999998763 23467789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcc
Q 047506 81 HSDWSPVNDLRALQRITLDPQLE 103 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK 103 (947)
|++-|--...+.||||+|.|-.-
T Consensus 348 D~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 348 DAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred CCCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999754
No 79
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.97 E-value=0.0011 Score=76.87 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+-+...+..+...|.-++..- .+.+-.|.|....+.|.+.+.+|+.+ ++.+++ ++.+..-|+.+...+.||.|
T Consensus 433 lcf~~S~~sa~Rl~~~L~v~~~~~--~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLI-cSD~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 433 LCFVNSVSSANRLAHVLKVEFCSD--NFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLI-CSDALARGIDVNDVDNVINY 508 (620)
T ss_pred EEEecchHHHHHHHHHHHHHhccc--cchhhhhhhhhhHHHHHHHHHHHhcC-CceEEE-ehhhhhcCCcccccceEeec
Confidence 567766644457777777555544 56677799999999999999999985 355555 55999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
||+-.-....+.+||..|-||. =++|.|+...
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~--G~a~tll~~~ 540 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQD--GYAITLLDKH 540 (620)
T ss_pred CCCchhhHHHHhhcccccccCC--ceEEEeeccc
Confidence 9998888888899999999994 5677777654
No 80
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=96.97 E-value=0.00089 Score=77.47 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=82.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||+..- .+...+.+.|.+. .+++.-|||+.+...|.....+|.+.. ..+|++|..++-|++....|-||-|
T Consensus 334 iVF~sT~----~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaARGlD~P~V~~VvQ~ 405 (543)
T KOG0342|consen 334 IVFFSTC----MSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAARGLDIPDVDWVVQY 405 (543)
T ss_pred EEEechh----hHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcc--cceEEecchhhccCCCCCceEEEEe
Confidence 4666666 7777778888766 899999999999999999999999833 2478889999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCc
Q 047506 81 HSDWSPVNDLRALQRITLDPQL 102 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQk 102 (947)
||+=+|....+.+||..|-|-+
T Consensus 406 ~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 406 DPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred CCCCCHHHHHHHhccccccCCC
Confidence 9999999999999999997665
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.96 E-value=0.0025 Score=77.64 Aligned_cols=106 Identities=8% Similarity=0.084 Sum_probs=84.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS-------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt-------- 72 (947)
|||+... ...+.+...|... |+++..++|.....+|..+..+|+.+ -++++|..+|-|+.+.
T Consensus 428 LIft~s~----~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIATdmAgRGtDI~l~~~v~~~ 497 (762)
T TIGR03714 428 LLITGSV----EMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVATSMAGRGTDIKLGKGVAEL 497 (762)
T ss_pred EEEECcH----HHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC----eEEEEccccccccCCCCCcccccc
Confidence 6888888 8999999999987 99999999999988876666655543 3667889999999998
Q ss_pred -ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 73 -SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 73 -aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
+-++|+.|+++=+ ..+.|..||++|.|..=... -|+ |.|+.++.
T Consensus 498 GGL~vIit~~~ps~-rid~qr~GRtGRqG~~G~s~--~~i---s~eD~l~~ 542 (762)
T TIGR03714 498 GGLAVIGTERMENS-RVDLQLRGRSGRQGDPGSSQ--FFV---SLEDDLIK 542 (762)
T ss_pred CCeEEEEecCCCCc-HHHHHhhhcccCCCCceeEE--EEE---ccchhhhh
Confidence 7799999999954 46699999999999875533 233 33565553
No 82
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=96.93 E-value=0.0025 Score=77.98 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=79.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC---ccc--
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS---SVH-- 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt---aAd-- 75 (947)
|||+.+. ...+.|...|... |+++..++|.....++.-+..+|..+. +++.|..+|-|+... ...
T Consensus 444 LI~t~si----~~se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 444 LVGTVAI----ESSERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCce----EEEEeccccCCCCCCCCcchhhh
Confidence 6888888 8889999999988 999999999988666666666555432 666678888888774 566
Q ss_pred ---eeEEecCCCCCCchhHHhhhccCCCCcceEE
Q 047506 76 ---AVIIFHSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 76 ---tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
|||.++.+=++..+.|.+||++|.|..=...
T Consensus 514 GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 514 GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred CCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9999999999999999999999999976543
No 83
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=96.90 E-value=0.00021 Score=63.25 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred ChhhHHhhhcCCCCcc----ccccCCCCcccceeecCcccc
Q 047506 213 PHIFWTNLLEGKHPCW----KYYSGSSQGSRKRVQYFDDLQ 249 (947)
Q Consensus 213 P~~fW~kLLe~~~p~~----~~~~GrG~R~RK~V~Y~D~l~ 249 (947)
.++||++||.+++.+. ...+|+|+|.||+|+|.+..+
T Consensus 23 ~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 23 DPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 4599999999887755 556899999999999987643
No 84
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.86 E-value=0.0035 Score=73.86 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=81.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||-|...-...+...|+ .|.++..-.++|..+..+|...+++|..+. +.| |+.|...+-||.+.+++.||.|
T Consensus 391 lIfVQs~eRak~L~~~L~-----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~-Iwv-LicTdll~RGiDf~gvn~VIny 463 (593)
T KOG0344|consen 391 LIFVQSKERAKQLFEELE-----IYDNINVDVIHGERSQKQRDETMERFRIGK-IWV-LICTDLLARGIDFKGVNLVINY 463 (593)
T ss_pred EEEEecHHHHHHHHHHhh-----hccCcceeeEecccchhHHHHHHHHHhccC-eeE-EEehhhhhccccccCcceEEec
Confidence 588888733335555555 256899999999999999999999999863 555 5567999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~ 113 (947)
|.+=.-......|||.+|-|+. -+.|-|++.
T Consensus 464 D~p~s~~syihrIGRtgRag~~--g~Aitfytd 494 (593)
T KOG0344|consen 464 DFPQSDLSYIHRIGRTGRAGRS--GKAITFYTD 494 (593)
T ss_pred CCCchhHHHHHHhhccCCCCCC--cceEEEecc
Confidence 9986666667778888888885 345555555
No 85
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.66 E-value=0.0061 Score=77.30 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=81.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhc----CCC---cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRF----GSD---SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSS 73 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf----~Gi---~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLta 73 (947)
|||+... ...+.+.+.|...| +++ .+..++|+++ +|..+|++|.++. ...+|+++...+.|++...
T Consensus 702 iIF~~s~----~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 702 LIFAATD----AHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred EEEEcCH----HHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEecccccCCCccc
Confidence 5788776 55555555544332 333 4567999985 6788999998743 3367788899999999999
Q ss_pred cceeEEecCCCCCCchhHHhhhccCCCC---cceEEEEEEe
Q 047506 74 VHAVIIFHSDWSPVNDLRALQRITLDPQ---LEQIKVFRLY 111 (947)
Q Consensus 74 AdtVIifDpdWNPa~DlQAIdRaHRIGQ---kK~V~VyRLV 111 (947)
.++|||+.|.-++....|.+||+.|.-- +....||.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 7778899875
No 86
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.47 E-value=0.0063 Score=71.72 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=65.2
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEEecCC-CC--------C
Q 047506 17 LDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD-WS--------P 86 (947)
Q Consensus 17 LEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd-WN--------P 86 (947)
+..-+..+ ++.....|.|+.++.-|.+--..||+ +.++.|+++| .|-|.||||. -.+|||++.. +| -
T Consensus 372 ~k~kIE~~-g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~ 448 (700)
T KOG0953|consen 372 VKKKIEKA-GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFYSLIKYSGRETEDITV 448 (700)
T ss_pred HHHHHHHh-cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEeecccCCcccceeccH
Confidence 33444444 34559999999999999999999999 6677777776 9999999995 6789998765 22 2
Q ss_pred CchhHHhhhccCCCCcce
Q 047506 87 VNDLRALQRITLDPQLEQ 104 (947)
Q Consensus 87 a~DlQAIdRaHRIGQkK~ 104 (947)
.+-.|--|||+|.|-+-+
T Consensus 449 sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 449 SQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred HHHHHHhhcccccccCCc
Confidence 233488999999976543
No 87
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=96.46 E-value=0.011 Score=69.11 Aligned_cols=87 Identities=22% Similarity=0.189 Sum_probs=75.2
Q ss_pred EeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-CCCchhHHhhhccCCCCc----ceEEE
Q 047506 33 VDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-SPVNDLRALQRITLDPQL----EQIKV 107 (947)
Q Consensus 33 LDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-NPa~DlQAIdRaHRIGQk----K~V~V 107 (947)
|.|.++..+|.+++..|+.++.+.-+.+| +.|-..+.|..|+.+|-..+.. .-.++.|.+||+-|---. -.++.
T Consensus 568 IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafF 646 (776)
T KOG1123|consen 568 IYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFF 646 (776)
T ss_pred EECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceee
Confidence 67999999999999999998888777766 9999999999999999999987 467788999999886432 24889
Q ss_pred EEEecCCCHHHHH
Q 047506 108 FRLYSFCTVEEKV 120 (947)
Q Consensus 108 yRLVT~nTVEEkI 120 (947)
|-||+.+|.|..-
T Consensus 647 YSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 647 YSLVSKDTQEMYY 659 (776)
T ss_pred eeeeecchHHHHh
Confidence 9999999998754
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.46 E-value=0.016 Score=70.00 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCC--HHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC---CCC-
Q 047506 13 LGDILDDFVRQRFGSDSYERVDGNVL--DSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD---WSP- 86 (947)
Q Consensus 13 mLDILEdfL~~rf~Gi~y~RLDGsts--~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd---WNP- 86 (947)
=.+.+++.|...|++.++.++||.+. ..+|.++++.|.++. .. +|+.|+...-|++....+.|+++|.| ..|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-~~-ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE-AD-ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC-CC-EEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 46788899998899999999999986 467899999999742 33 55667888999999999999999877 334
Q ss_pred --------CchhHHhhhccCCCCcceEEEEEEe
Q 047506 87 --------VNDLRALQRITLDPQLEQIKVFRLY 111 (947)
Q Consensus 87 --------a~DlQAIdRaHRIGQkK~V~VyRLV 111 (947)
+.-.|+.||++|.|..-.|.|.-.-
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 3567999999999888877766543
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.013 Score=68.65 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHH--HHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC--CC-C--
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKK--KAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD--WS-P-- 86 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eR--q~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd--WN-P-- 86 (947)
.+.+++.|...|++.++.++|+.+....+ ..+++.|.++. . -+|+.|+...-|++....+.|+++|.| +| |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~-~-~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGK-A-DILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCC-C-CEEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 57888999988999999999999987766 88999998743 2 356678889999999999999888777 23 4
Q ss_pred -------CchhHHhhhccCCCCcceEEEEEE
Q 047506 87 -------VNDLRALQRITLDPQLEQIKVFRL 110 (947)
Q Consensus 87 -------a~DlQAIdRaHRIGQkK~V~VyRL 110 (947)
+.-.|..||++|-+..-.|.|.-.
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 345799999999888777765543
No 90
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=96.44 E-value=0.0084 Score=69.01 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG-SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~-Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||.-. .-.|-|++|+.++.+ .++++-++|..++++|.+.+++|.... .-||+.|..++-||.++.--.||.
T Consensus 509 iifcrtk----~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d--vkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 509 IIFCRTK----QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD--VKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred EEEEecc----ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC--eEEEEEehhhhccccccCCceEEE
Confidence 4676666 678999999998722 478999999999999999999998732 458999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccC
Q 047506 80 FHSDWSPVNDLRALQRITL 98 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHR 98 (947)
+..+=.-.+..+.|||++|
T Consensus 583 vtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EecCcccchhhhhhhccch
Confidence 9888777777777766655
No 91
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.36 E-value=0.0096 Score=69.72 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=87.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||.|.- .....|.-.|--. |++...++|+.+..+|-..+..|.+.. + -+|+.|..++-||.+.+.-+||.|
T Consensus 430 ivFv~tK----k~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~e-i-dvLiaTDvAsRGLDI~gV~tVINy 501 (691)
T KOG0338|consen 430 IVFVRTK----KQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEE-I-DVLIATDVASRGLDIEGVQTVINY 501 (691)
T ss_pred EEEEehH----HHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhcc-C-CEEEEechhhccCCccceeEEEec
Confidence 4677766 6666666666544 899999999999999999999999742 3 366778999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
+.+-.-...++..||.-|-|.. =+-.-|+..+ |-+|+...
T Consensus 502 ~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkllK~i 541 (691)
T KOG0338|consen 502 AMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLLKEI 541 (691)
T ss_pred cCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHHHHH
Confidence 9998888888888888777763 2334566665 66666543
No 92
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.25 E-value=0.01 Score=67.12 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=82.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||.|-+ ....+|...|+.. ++....+|+-++..+|-.++.+|..+. . -+|+.|..++-||.....+-||.|
T Consensus 258 mIFvntt----r~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~-~-~iliaTDVAsRGLDIP~V~LVvN~ 329 (442)
T KOG0340|consen 258 MIFVNTT----RECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNA-A-RILIATDVASRGLDIPTVELVVNH 329 (442)
T ss_pred EEEeehh----HHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcC-c-cEEEEechhhcCCCCCceeEEEec
Confidence 4788888 8888899999887 899999999999999999999998753 3 356667999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCc
Q 047506 81 HSDWSPVNDLRALQRITLDPQL 102 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQk 102 (947)
|.+-.|....+..||.-|-|..
T Consensus 330 diPr~P~~yiHRvGRtARAGR~ 351 (442)
T KOG0340|consen 330 DIPRDPKDYIHRVGRTARAGRK 351 (442)
T ss_pred CCCCCHHHHHHhhcchhcccCC
Confidence 9999999999999887777664
No 93
>PRK00254 ski2-like helicase; Provisional
Probab=96.24 E-value=0.019 Score=69.32 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=61.9
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-------ecCCCCCC-chhHHhhhccCCC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII-------FHSDWSPV-NDLRALQRITLDP 100 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi-------fDpdWNPa-~DlQAIdRaHRIG 100 (947)
.+..++|+++..+|..+.+.|.++ .+ -+|++|.+.+.|+|+.+.+.||. ++..+-|. ...|.+|||+|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G-~i-~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREG-LI-KVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCC-CC-eEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 477889999999999999999975 33 46667899999999987766663 22222233 3479999999998
Q ss_pred CcceEEEEEEecCC
Q 047506 101 QLEQIKVFRLYSFC 114 (947)
Q Consensus 101 QkK~V~VyRLVT~n 114 (947)
..+.=.++-+....
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76665566555543
No 94
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=96.22 E-value=0.02 Score=69.71 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=74.5
Q ss_pred CEEEeecCChhhHHHHHHHHHH-hhcCCCcEEEEeC--------CCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCC
Q 047506 1 MCLFACSIGGGSLGDILDDFVR-QRFGSDSYERVDG--------NVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKL 71 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~-~rf~Gi~y~RLDG--------sts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNL 71 (947)
|||+-+. ...+.|-.||. ....|++-..+-| +++..+.+..|+.|+++ ...| |+.|-.|-.||..
T Consensus 417 IIFve~R----~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~Nv-LVATSV~EEGLDI 490 (746)
T KOG0354|consen 417 IIFVETR----ESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINV-LVATSVAEEGLDI 490 (746)
T ss_pred EEEEehH----HHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC-CccE-EEEecchhccCCc
Confidence 5777776 55555556655 2223555555555 67788889999999984 3444 4566888999999
Q ss_pred CccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEE
Q 047506 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 72 taAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyR 109 (947)
..+|-||+||-.=||-...|++|| +|--+.+-|.++.
T Consensus 491 ~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 491 GECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred ccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEc
Confidence 999999999999999888888888 6665555555554
No 95
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.14 E-value=0.014 Score=72.83 Aligned_cols=108 Identities=10% Similarity=0.098 Sum_probs=85.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccc-----
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVH----- 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAd----- 75 (947)
|||+.+. ...+.|..+|... |+++..|++ +..+|.+.|..|...+. .+++.|..+|-|+.+.-.+
T Consensus 602 LIft~Sv----e~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g--~VtIATNMAGRGtDIkl~~~V~~v 671 (1025)
T PRK12900 602 LVGTASV----EVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKG--AVTIATNMAGRGTDIKLGEGVREL 671 (1025)
T ss_pred EEEeCcH----HHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCC--eEEEeccCcCCCCCcCCccchhhh
Confidence 6899998 9999999999988 999999997 67799999999986543 4666778888888877433
Q ss_pred ---eeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHH
Q 047506 76 ---AVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 76 ---tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ 123 (947)
+||.++.+=+...+.|.+||++|.|..=....| -|.|+.++.+
T Consensus 672 GGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-----vSleD~Lmr~ 717 (1025)
T PRK12900 672 GGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-----VSLEDELMRL 717 (1025)
T ss_pred CCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-----echhHHHHHh
Confidence 448888888888999999999999997554322 1556666543
No 96
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.08 E-value=0.012 Score=73.52 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=89.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||+|.+. .+.+.++.+|+.- |++..-||.+++..+|..+...|..+. +.|.. -|-|-|.||+=...--||-|
T Consensus 489 IIYC~sr----~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~Viv-ATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 489 IIYCLSR----KECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDK-IRVIV-ATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred EEEeCCc----chHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCC-CeEEE-EEeeccCCCCCCceeEEEEC
Confidence 6888888 9999999999987 899999999999999999999999865 44444 46889999999888888888
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEec
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYS 112 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT 112 (947)
..+=.---.-|..|||+|.|+...+..|.=+.
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 87766666679999999999998877776554
No 97
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=95.96 E-value=0.0082 Score=71.10 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII- 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi- 79 (947)
|||+-+. .-...|.++|..+ |++...||++++..+|+.+=..|.+.. -..+.+|.|.|.|....+ +.|||
T Consensus 444 IVFT~SR----rr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~--l~~VVTTAAL~AGVDFPA-SQVIFE 514 (830)
T COG1202 444 IVFTYSR----RRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQE--LAAVVTTAALAAGVDFPA-SQVIFE 514 (830)
T ss_pred EEEecch----hhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCC--cceEeehhhhhcCCCCch-HHHHHH
Confidence 4666666 7789999999988 999999999999999999999998743 345668899999999764 55554
Q ss_pred ---ecCCC-CCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 80 ---FHSDW-SPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 80 ---fDpdW-NPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
+.-+| +|+--.|-.|||+|.|=-..=.||-|+..+
T Consensus 515 sLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 515 SLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 56667 899999999999999988888888887553
No 98
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.87 E-value=0.019 Score=65.88 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=79.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||.... -|.|-|..-|. +.|+....|+|.-...+|..++..|..+ .--+|+.|..+.-||.+....||+.|
T Consensus 469 IiFv~~K----~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG--~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 469 IIFVSRK----VMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSG--EVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred EEEEech----hhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcC--ceEEEEEechhhcCCCchhcceeecc
Confidence 4566555 66676665555 3499999999999999999999999764 24466677999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcce
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQ 104 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~ 104 (947)
|-+-|-....+.+||.+|-|.+-.
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcc
Confidence 999999888899999999987654
No 99
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.84 E-value=0.021 Score=73.22 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=77.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR-FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r-f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||.-.. .-++.+.+.|... ++...+..++|+++..+|.++++.+ +..-+|++|..+..||++...++||-
T Consensus 290 LVFLpg~----~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 290 LIFMSGE----REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred EEEcCCH----HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEEEE
Confidence 4666555 6667777778765 2223467899999999999887653 23457778899999999999999998
Q ss_pred ecC----CCCCC-----------chhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 80 FHS----DWSPV-----------NDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 80 fDp----dWNPa-----------~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
++. -|||. .-.+|+.|++|-|-..+=.+|||+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHH
Confidence 752 23332 223566666666666788899999876543
No 100
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=95.77 E-value=0.0032 Score=56.39 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=31.8
Q ss_pred ccCC-CCCCChhhHHhhhcC---CCCcc---ccccCCCCcccceeecCcccccC
Q 047506 205 VEGM-DEERPHIFWTNLLEG---KHPCW---KYYSGSSQGSRKRVQYFDDLQKK 251 (947)
Q Consensus 205 ~~~~-deE~P~~fW~kLLe~---~~p~~---~~~~GrG~R~RK~V~Y~D~l~e~ 251 (947)
.+++ ++|+|..|-...... ....+ ...+|||+|+||.|+|+|+++++
T Consensus 18 ~RLm~e~ELPe~~~~d~~~~~~~~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEe 71 (74)
T PF14619_consen 18 SRLMEESELPEWYREDIEEELEKEEEEEEAETNEYGRGKRERKEVSYDDGLTEE 71 (74)
T ss_pred ccccchhhchHHHHhcchhhhhhhhhhhccchhhcccccccccccccCCCCCHH
Confidence 3565 469998665443322 11111 23579999999999999999975
No 101
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.36 E-value=0.05 Score=65.69 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=71.7
Q ss_pred HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC-CCCCchhHHhhhcc
Q 047506 19 DFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD-WSPVNDLRALQRIT 97 (947)
Q Consensus 19 dfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd-WNPa~DlQAIdRaH 97 (947)
..|...|+++...-+||+++.+++.++|.+|.++. + -+|++|..-=+|+++..|..+||.+++ +--++--|--||++
T Consensus 499 ~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e-~-~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVG 576 (677)
T COG1200 499 EELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE-I-DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVG 576 (677)
T ss_pred HHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC-C-cEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccC
Confidence 34555578889999999999999999999999854 2 366677888999999999999999998 67777779999999
Q ss_pred CCCCcceE
Q 047506 98 LDPQLEQI 105 (947)
Q Consensus 98 RIGQkK~V 105 (947)
|-+..--|
T Consensus 577 RG~~qSyC 584 (677)
T COG1200 577 RGDLQSYC 584 (677)
T ss_pred CCCcceEE
Confidence 98876543
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.24 E-value=0.067 Score=66.59 Aligned_cols=107 Identities=7% Similarity=0.065 Sum_probs=86.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS-------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt-------- 72 (947)
|||+.+. ..-+.|..+|..+ |+++..|+|.....+|..+.+.|..+. +++.|..+|-|+.+.
T Consensus 448 LVgt~Si----e~sE~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 448 LVGTVSI----EASEFLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred EEEeCcH----HHHHHHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccCccCCcceecCCchhhh
Confidence 6888888 8999999999988 999999999999999999999999873 555667777675444
Q ss_pred ------------------------------ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 73 ------------------------------SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 73 ------------------------------aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
+.=|||.-+..=+-..|.|..||++|-|..=....|- |+|..++.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~ 592 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMR 592 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHH
Confidence 2347888888999999999999999999976554442 45555554
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.92 E-value=0.082 Score=65.83 Aligned_cols=107 Identities=8% Similarity=0.059 Sum_probs=85.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS-------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt-------- 72 (947)
|||+.+. ..-+.|..+|..+ |+++..+++.....+|..+.+.|+.+. +++.|..+|-|+.+.
T Consensus 453 LV~t~sv----~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnmAGRGTDIkLggn~~~~ 522 (908)
T PRK13107 453 LVGTVSI----EQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNMAGRGTDIVLGGNWNME 522 (908)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCCcCCCcceecCCchHHh
Confidence 6888888 8899999999988 999999999999999999999998764 555567667665444
Q ss_pred -----------------------------ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 73 -----------------------------SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 73 -----------------------------aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
+.=+||.-+..=+-..|.|..||++|-|..=.-..|- |.|..++.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r 596 (908)
T PRK13107 523 IEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMR 596 (908)
T ss_pred hhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHH
Confidence 3348899899999999999999999999975543331 44555543
No 104
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.85 E-value=0.06 Score=63.37 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHh
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRAL 93 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAI 93 (947)
.+-|..-|... |+.+..++|++...+|.+.|..|.... +.| |.-|.....||++..--+||.||.--.-....|.|
T Consensus 481 ~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~-~~V-lvatDvaargldI~~ikTVvnyD~ardIdththri 556 (731)
T KOG0339|consen 481 AEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKR-KPV-LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRI 556 (731)
T ss_pred HHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcC-Cce-EEEeeHhhcCCCccccceeecccccchhHHHHHHh
Confidence 45556666655 999999999999999999999998742 223 44468889999999999999999887777777999
Q ss_pred hhccCCCCcceEEEEEEecCCCHH
Q 047506 94 QRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 94 dRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
+|.+|-|-+ =..|-|||..-.+
T Consensus 557 grtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 557 GRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred hhccccccc--ceeeEEechhhHH
Confidence 999999987 6678898875544
No 105
>PRK09694 helicase Cas3; Provisional
Probab=94.82 E-value=0.12 Score=64.71 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhhcC-CCcEEEEeCCCCHHHH----HHHHHhhhc-CC-CceEEEEecccCcCccCCCccceeEEecCCC
Q 047506 12 SLGDILDDFVRQRFG-SDSYERVDGNVLDSKK----KAALQNFNN-GS-GRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84 (947)
Q Consensus 12 ~mLDILEdfL~~rf~-Gi~y~RLDGsts~~eR----q~aId~FN~-ds-~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW 84 (947)
.-..-+-++|...++ ...+..++|++...+| .++++.|.. +. ....+|++|.....||++ .+|.+|....+
T Consensus 571 ~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP- 648 (878)
T PRK09694 571 DDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP- 648 (878)
T ss_pred HHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC-
Confidence 444455556665532 2578999999999999 467889954 32 124678899999999999 57888875443
Q ss_pred CCCchhHHhhhccCCCCc
Q 047506 85 SPVNDLRALQRITLDPQL 102 (947)
Q Consensus 85 NPa~DlQAIdRaHRIGQk 102 (947)
...-+|.+||+||.|..
T Consensus 649 -idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 649 -VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -HHHHHHHHhccCCCCCC
Confidence 23456999999999875
No 106
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=94.77 E-value=0.037 Score=65.52 Aligned_cols=93 Identities=10% Similarity=0.128 Sum_probs=81.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+-.. .....|.-||... +++.+.||..|...+|-+.+++|.+.+. .+|+.|..++-||..+..+|||-|
T Consensus 467 lVF~NsI----d~vKRLt~~L~~L--~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 467 LVFCNSI----DCVKRLTVLLNNL--DIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred EEEechH----HHHHHHHHHHhhc--CCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEe
Confidence 5888888 8899999999987 9999999999999999999999998553 477778999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQ 101 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQ 101 (947)
--+-.-.+..+.-||.-|-+-
T Consensus 539 qVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred ecCCccceeEecccccccccC
Confidence 999888888777777777654
No 107
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.75 E-value=0.062 Score=69.16 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=75.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR-FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r-f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||.-.. ..++.+.+.|..+ ++++.+..++|+++..+|.++++.+ +.. -+|++|..+..||++....+||-
T Consensus 283 LVFLpg~----~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~r-kIVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 283 LIFLPGE----REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGR-RIVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred EEeCCCH----HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCc-eEEEeccHHHhccccCCeeEEEe
Confidence 4555444 5566666777654 2346688999999999999885544 233 46678899999999999999998
Q ss_pred ecC----CCCCC--------------chhHHhhhccCCCCcceEEEEEEecCCCHHH
Q 047506 80 FHS----DWSPV--------------NDLRALQRITLDPQLEQIKVFRLYSFCTVEE 118 (947)
Q Consensus 80 fDp----dWNPa--------------~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEE 118 (947)
++. -+||. ...|..||++|.| +=.+|||+++...+.
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 762 24443 3346666666665 778999998775543
No 108
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=94.47 E-value=0.12 Score=64.70 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=82.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||++.- .-+|.|-.-|... |+.+..++|+.+..+|...|..|.++. ..+|+.|....-||+.-.-..||.|
T Consensus 617 iiFv~~q----e~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~--~~LLvaTsvvarGLdv~~l~Lvvny 688 (997)
T KOG0334|consen 617 IIFVDKQ----EKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGV--VNLLVATSVVARGLDVKELILVVNY 688 (997)
T ss_pred EEEEcCc----hHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccC--ceEEEehhhhhcccccccceEEEEc
Confidence 6888887 6677777777766 999999999999999999999998753 4577778889999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~ 113 (947)
|.+=--.....+.||+.|-|-+- ..|-|++.
T Consensus 689 d~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 689 DFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred ccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 98733334557777777777766 55666655
No 109
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=94.19 E-value=0.094 Score=58.51 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=57.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+...|.....++.+..++|.++..+|.+.. ...+|++|.+.+.||++.. ++|| +
T Consensus 276 LIf~nt~----~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iLVaTdv~~rGiDi~~-~~vi-~ 341 (357)
T TIGR03158 276 AIILDSL----DEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDILLGTSTVDVGVDFKR-DWLI-F 341 (357)
T ss_pred EEEECCH----HHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEEEEecHHhcccCCCC-ceEE-E
Confidence 5777777 77888888888652246788999999999987653 2347788999999999975 5666 5
Q ss_pred cCCCCCCchhHHhhhc
Q 047506 81 HSDWSPVNDLRALQRI 96 (947)
Q Consensus 81 DpdWNPa~DlQAIdRa 96 (947)
+| -++....|.+||+
T Consensus 342 ~p-~~~~~yiqR~GR~ 356 (357)
T TIGR03158 342 SA-RDAAAFWQRLGRL 356 (357)
T ss_pred CC-CCHHHHhhhcccC
Confidence 53 2344444544443
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=94.17 E-value=0.2 Score=62.29 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=83.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC--CC------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK--LS------ 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN--Lt------ 72 (947)
|||+.+. ...+.|...|..+ |+++..|+|. ..+|.+.|..|...+. . +++.|..+|-|+. |-
T Consensus 434 LIft~Si----~~se~Ls~~L~~~--gi~~~vLnak--q~eREa~Iia~Ag~~g-~-VtIATNmAGRGtDI~LgGn~~~~ 503 (830)
T PRK12904 434 LVGTVSI----EKSELLSKLLKKA--GIPHNVLNAK--NHEREAEIIAQAGRPG-A-VTIATNMAGRGTDIKLGGNPEML 503 (830)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCceEeccCc--hHHHHHHHHHhcCCCc-e-EEEecccccCCcCccCCCchhhh
Confidence 6888888 9999999999988 9999999995 7789999999986543 3 4555566666654 44
Q ss_pred ------------------------------ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 73 ------------------------------SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 73 ------------------------------aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
+.=|||.-...=+-..|.|..||++|-|..=....|= |.|..++.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 504 AAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 3458888888889999999999999999986655442 44555443
No 111
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=91.91 E-value=0.73 Score=57.38 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=90.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||.-.. ++-..+...|...+ +..+..=|||++.+.|..+-++|.++. .++++ +|...-+||..=..|.||.|
T Consensus 257 LIF~NTR----~~aE~l~~~L~~~~-~~~i~~HHgSlSre~R~~vE~~lk~G~-lravV-~TSSLELGIDiG~vdlVIq~ 329 (814)
T COG1201 257 LIFTNTR----SGAERLAFRLKKLG-PDIIEVHHGSLSRELRLEVEERLKEGE-LKAVV-ATSSLELGIDIGDIDLVIQL 329 (814)
T ss_pred EEEEeCh----HHHHHHHHHHHHhc-CCceeeecccccHHHHHHHHHHHhcCC-ceEEE-EccchhhccccCCceEEEEe
Confidence 4666666 77888888888873 378899999999999999999999875 55555 55777999999999999999
Q ss_pred cCCCCCCchhHHhhhc-cCCCCcceEEEEEEecCCCHHHHHHHHHHhCCC
Q 047506 81 HSDWSPVNDLRALQRI-TLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKT 129 (947)
Q Consensus 81 DpdWNPa~DlQAIdRa-HRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~ 129 (947)
.++---..-+|.+||+ ||+|..-. +.+++.+ .++.+--.+.-+..
T Consensus 330 ~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 330 GSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred CCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHHH
Confidence 9998777788999998 77877433 4444555 55555444444433
No 112
>PRK09401 reverse gyrase; Reviewed
Probab=91.50 E-value=0.49 Score=61.03 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=66.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEe---cccCcCccCCCc-cce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLE---TRACRPSIKLSS-VHA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLS---TrAGG~GLNLta-Adt 76 (947)
|||++.. ......+.|..+|... |++...++|++ .+.+++|.++ .+.|++.+ |...+-||++.. ..+
T Consensus 332 LIFv~t~-~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 332 LIFVPSD-KGKEYAEELAEYLEDL--GINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred EEEEecc-cChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeE
Confidence 6888765 1113488999999987 99999999999 2346999876 35677776 788999999998 899
Q ss_pred eEEecCCC------CCCchhHHhhhcc
Q 047506 77 VIIFHSDW------SPVNDLRALQRIT 97 (947)
Q Consensus 77 VIifDpdW------NPa~DlQAIdRaH 97 (947)
||+||.+= .......+++|.-
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHH
Confidence 99999984 3334446666665
No 113
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=91.22 E-value=0.43 Score=55.78 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=81.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEec------------------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLET------------------ 62 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLST------------------ 62 (947)
|||--.. .+.-.|.-||.+- |++.+.++|-++...|.-+|++||.+. +.+++++-
T Consensus 272 liFVNtI----dr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~-YdivIAtD~s~~~~~~eee~kgk~~e 344 (569)
T KOG0346|consen 272 LIFVNTI----DRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGL-YDIVIATDDSADGDKLEEEVKGKSDE 344 (569)
T ss_pred EEEEech----hhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcc-eeEEEEccCccchhhhhccccccccc
Confidence 4666666 6666677788875 999999999999999999999999853 44555443
Q ss_pred ------c-cC---------cCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEe
Q 047506 63 ------R-AC---------RPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLY 111 (947)
Q Consensus 63 ------r-AG---------G~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLV 111 (947)
+ +. .-||.....+.||.||.+-++....+.+||..|-|-+-.+.-|-.-
T Consensus 345 ~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 345 KNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred cCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc
Confidence 0 11 3699999999999999999999999999999999887666555443
No 114
>PRK14701 reverse gyrase; Provisional
Probab=90.12 E-value=0.66 Score=61.61 Aligned_cols=93 Identities=8% Similarity=0.090 Sum_probs=70.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEec---ccCcCccCCCc-cce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLET---RACRPSIKLSS-VHA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLST---rAGG~GLNLta-Adt 76 (947)
|||++.. -.....+-|..+|... |++...++|. |..++++|.++. +.|++.+. ...+-||++.. ..+
T Consensus 334 IVF~~t~-~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~~l~~F~~G~-~~VLVaT~s~~gvaaRGIDiP~~Vry 404 (1638)
T PRK14701 334 LIFVPID-EGAEKAEEIEKYLLED--GFKIELVSAK-----NKKGFDLFEEGE-IDYLIGVATYYGTLVRGLDLPERIRF 404 (1638)
T ss_pred EEEEecc-ccchHHHHHHHHHHHC--CCeEEEecch-----HHHHHHHHHcCC-CCEEEEecCCCCeeEecCccCCccCE
Confidence 6888765 1113468889999987 9999999994 899999999863 45666653 46789999998 899
Q ss_pred eEEecCCC---CCCchh-------------HHhhhccCCCCc
Q 047506 77 VIIFHSDW---SPVNDL-------------RALQRITLDPQL 102 (947)
Q Consensus 77 VIifDpdW---NPa~Dl-------------QAIdRaHRIGQk 102 (947)
||+||.+= +-..+. +.++|+.|-|..
T Consensus 405 vi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 405 AVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 99999885 444333 445999999985
No 115
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.88 E-value=1.3 Score=56.80 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC-CCCCchhHH
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD-WSPVNDLRA 92 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd-WNPa~DlQA 92 (947)
+.-+...|+...|..++...||.|+..+=..+|..|-++. +-+|++|.--=.||.+.+|||+|+-+.| +--++--|-
T Consensus 816 Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~--~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQL 893 (1139)
T COG1197 816 IEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGE--YDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQL 893 (1139)
T ss_pred HHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCC--CCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHh
Confidence 5556677887788889999999999999999999998742 3355566777999999999999999988 566777799
Q ss_pred hhhccCCCCcceEEEEEEecC
Q 047506 93 LQRITLDPQLEQIKVFRLYSF 113 (947)
Q Consensus 93 IdRaHRIGQkK~V~VyRLVT~ 113 (947)
-||++|-.+ .-+.|-|+-.
T Consensus 894 RGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 894 RGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred ccccCCccc--eEEEEEeecC
Confidence 999999865 5667766653
No 116
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=88.67 E-value=0.79 Score=53.63 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhH
Q 047506 12 SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLR 91 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQ 91 (947)
.-.+-+.-.|..+ |+...-++.+.+..+|..+.+.|-++. +.|+ +-|-.-|.|..=...--||-.++.-|-+-.-|
T Consensus 266 ~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM~~~-~PvI-~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQ 341 (641)
T KOG0352|consen 266 NECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWMNNE-IPVI-AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQ 341 (641)
T ss_pred HHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHhcCC-CCEE-EEEeccccccCCcceeEEEecCchhhhHHHHH
Confidence 4456666677777 999999999999999999999999853 3344 44577899999888888888777777777779
Q ss_pred HhhhccCCCCcceEEEEE
Q 047506 92 ALQRITLDPQLEQIKVFR 109 (947)
Q Consensus 92 AIdRaHRIGQkK~V~VyR 109 (947)
--|||+|-|-..-++.|+
T Consensus 342 ESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 342 ESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hccccccCCCccceeeee
Confidence 999999999988787775
No 117
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.82 E-value=1.6 Score=56.52 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=59.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEe---cccCcCccCCCc-cce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLE---TRACRPSIKLSS-VHA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLS---TrAGG~GLNLta-Adt 76 (947)
|||++...| ....+-|..+|... |++...++|.++ +..++.|.++ .+.|++.+ |...+-||++.. .++
T Consensus 330 IVFv~t~~~-~~~a~~l~~~L~~~--g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 330 IVYVSIDYG-KEKAEEIAEFLENH--GVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred EEEEecccc-HHHHHHHHHHHHhC--CceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccE
Confidence 577654311 14577888999877 999999999986 3789999875 35677776 688999999998 799
Q ss_pred eEEecCC
Q 047506 77 VIIFHSD 83 (947)
Q Consensus 77 VIifDpd 83 (947)
||+||.+
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999987
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=87.51 E-value=1.6 Score=53.60 Aligned_cols=99 Identities=7% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhhhc--CCCceEEEEecccCcCccCCCccceeEEecCCCCCCchh-HHhhhccCCC--C
Q 047506 27 SDSYERVDGNVLDSKKKAALQNFNN--GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL-RALQRITLDP--Q 101 (947)
Q Consensus 27 Gi~y~RLDGsts~~eRq~aId~FN~--ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~Dl-QAIdRaHRIG--Q 101 (947)
+.+++-||++.....|.+.++.... ......++++|++-=+|+++. .|.+|- +-.|..-+ |+.||++|.| .
T Consensus 464 ~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT---e~aPidSLIQR~GRv~R~g~~~ 539 (733)
T COG1203 464 GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT---ELAPIDSLIQRAGRVNRHGKKE 539 (733)
T ss_pred CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee---cCCCHHHHHHHHHHHhhccccc
Confidence 4469999999999999999886653 222345777889999999987 555553 34454443 9999999999 7
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhCCC
Q 047506 102 LEQIKVFRLYSFCTVEEKVLILAKQDKT 129 (947)
Q Consensus 102 kK~V~VyRLVT~nTVEEkIlq~ak~Kl~ 129 (947)
...+.||...-......+.+.....++.
T Consensus 540 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 540 NGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred CCceeEeecccCCCchhhhhhcchhhhc
Confidence 7889999999999999998887766654
No 119
>COG4889 Predicted helicase [General function prediction only]
Probab=86.55 E-value=1.1 Score=56.29 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEEecCCCCCCchh-HHhhhccCCCCcce-
Q 047506 28 DSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL-RALQRITLDPQLEQ- 104 (947)
Q Consensus 28 i~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~Dl-QAIdRaHRIGQkK~- 104 (947)
+++-.+||+|...+|......-+. .+...-+|-..|+...|+...+-|.||||+|- |.+.|. ||.||+-|-.-.|.
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr-~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPR-SSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCc-hhHHHHHHHHHHHHHhCcCCcc
Confidence 467789999999999666655544 44444556667888999999999999999997 666665 99999999755443
Q ss_pred -EEEEEEecCCCH
Q 047506 105 -IKVFRLYSFCTV 116 (947)
Q Consensus 105 -V~VyRLVT~nTV 116 (947)
-.|.-+..+-+|
T Consensus 579 GYIILPIalpegi 591 (1518)
T COG4889 579 GYIILPIALPEGI 591 (1518)
T ss_pred ceEEEEeccCCCC
Confidence 334444444333
No 120
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=85.71 E-value=1.1 Score=44.90 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=47.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecc--cCcCccCCCc--c
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG--SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETR--ACRPSIKLSS--V 74 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~--Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTr--AGG~GLNLta--A 74 (947)
||||.+- .+|+.+.+++..... ++.. ... ...++..++++|..+.+. +|+.+. .-..|+++.. +
T Consensus 13 lv~f~Sy----~~l~~~~~~~~~~~~~~~~~v-~~q---~~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 13 LVFFPSY----RRLEKVYERLKERLEEKGIPV-FVQ---GSKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp EEEESSH----HHHHHHHTT-TSS-E-ETSCE-EES---TCCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECESE
T ss_pred EEEeCCH----HHHHHHHHHHHhhccccccee-eec---CcchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCchh
Confidence 5788877 899999998886521 2222 222 245789999999986443 344444 6689999994 8
Q ss_pred ceeEEecCCC-CC
Q 047506 75 HAVIIFHSDW-SP 86 (947)
Q Consensus 75 dtVIifDpdW-NP 86 (947)
..||+...++ +|
T Consensus 83 r~vii~glPfp~~ 95 (167)
T PF13307_consen 83 RAVIIVGLPFPPP 95 (167)
T ss_dssp EEEEEES-----T
T ss_pred heeeecCCCCCCC
Confidence 8999999887 44
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=83.74 E-value=4.9 Score=50.27 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=51.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh--cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccc--e
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR--FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVH--A 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r--f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAd--t 76 (947)
||||.+. .+|+.+.++|... ..++. .+..+.. ..|.+++++|..+.. .+|+.|.....|+++.... .
T Consensus 678 LVlftS~----~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~--~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 678 LVLFTSY----EMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEK--AILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred EEEeCCH----HHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCC--eEEEEcceeecccccCCCceEE
Confidence 5777777 8899998888752 12333 3333333 578999999987432 3445668889999999755 6
Q ss_pred eEEecCCC
Q 047506 77 VIIFHSDW 84 (947)
Q Consensus 77 VIifDpdW 84 (947)
|||.-.++
T Consensus 749 viI~~LPf 756 (850)
T TIGR01407 749 LVIPRLPF 756 (850)
T ss_pred EEEeCCCC
Confidence 77777666
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=82.51 E-value=5 Score=48.40 Aligned_cols=106 Identities=12% Similarity=0.184 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-----CC
Q 047506 12 SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-----SP 86 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-----NP 86 (947)
.|..-|.+||... |++...+|..+..-+|..+|.....+ .+-+|+-.--.-.||.|..++-|.|+|.|- +-
T Consensus 457 kmAEdLT~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G--~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse 532 (663)
T COG0556 457 KMAEDLTEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLG--EFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 532 (663)
T ss_pred HHHHHHHHHHHhc--CceEEeeeccchHHHHHHHHHHHhcC--CccEEEeehhhhccCCCcceeEEEEeecCcccccccc
Confidence 7888999999998 99999999999999999999999874 244555567778999999999999999983 44
Q ss_pred CchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 87 VNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 87 a~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
..-.|-||||-|----+.+.+-.-+| +|+.+-|-+
T Consensus 533 ~SLIQtIGRAARN~~GkvIlYAD~iT-~sM~~Ai~E 567 (663)
T COG0556 533 RSLIQTIGRAARNVNGKVILYADKIT-DSMQKAIDE 567 (663)
T ss_pred chHHHHHHHHhhccCCeEEEEchhhh-HHHHHHHHH
Confidence 45569999999987766555555443 444444433
No 123
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.45 E-value=6.9 Score=47.00 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=56.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCC-cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCc--ccee
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSD-SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSS--VHAV 77 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi-~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLta--AdtV 77 (947)
||||.+- .+|..+.+++... .. -.+...|... +..++++|...... .|++.+..-..|+++.. ...|
T Consensus 483 lvlF~Sy----~~l~~~~~~~~~~--~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 483 LVLFPSY----EYLKRVAERLKDE--RSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred EEEeccH----HHHHHHHHHHhhc--CccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEE
Confidence 5677777 8899998888865 32 2455666554 44899999984333 66777788899999996 4889
Q ss_pred EEecCCC-CCCc
Q 047506 78 IIFHSDW-SPVN 88 (947)
Q Consensus 78 IifDpdW-NPa~ 88 (947)
||...+| ||..
T Consensus 553 vI~~lPfp~p~d 564 (654)
T COG1199 553 VIVGLPFPNPDD 564 (654)
T ss_pred EEEecCCCCCCC
Confidence 9998887 4543
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=81.91 E-value=8.5 Score=47.08 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=51.5
Q ss_pred HHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCC-C-CcceEEEEEEec
Q 047506 43 KAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLD-P-QLEQIKVFRLYS 112 (947)
Q Consensus 43 q~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRI-G-QkK~V~VyRLVT 112 (947)
..++++|.+..... +|+....-..|......+++++.-|-=. +.-.||++|+.|+ + .+....|+.++-
T Consensus 580 ~~~~~~Fk~~~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 580 YKDLERFKKEENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHHhcCCCCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 47899998744444 5556688899999999999999877654 4578999999995 4 344567777753
No 125
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=81.37 E-value=2.8 Score=51.12 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhhcCCC--cEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEEecC------
Q 047506 12 SLGDILDDFVRQRFGSD--SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHS------ 82 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi--~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIifDp------ 82 (947)
.+..+|.+.....-.+. -++.+.|.++.++.. .-|.. .++.+=++++|..+-..|+..+--+|| |+
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~---rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVV--DsG~vK~~ 347 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQS---RVFDPAPPGKRKVILSTNIAETSLTIDGIRYVV--DSGFVKQK 347 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhh---ccccCCCCCcceEEEEcceeeeeEEecceEEEE--cCCceEEE
Confidence 56667777766541111 257899999987754 44776 446777777889889999888876664 44
Q ss_pred CCCCCch-----------hHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 83 DWSPVND-----------LRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 83 dWNPa~D-----------lQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
.|||..- .||..|++|-|.+.+..+|||+++.-.
T Consensus 348 ~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 348 KYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred eeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 3677433 389999999999999999999998766
No 126
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=78.30 E-value=20 Score=35.76 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCC-------cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCc--cceeEEecCC
Q 047506 13 LGDILDDFVRQRFGSD-------SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSS--VHAVIIFHSD 83 (947)
Q Consensus 13 mLDILEdfL~~rf~Gi-------~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLta--AdtVIifDpd 83 (947)
+|+.+.+++... +. ..+.+.| ....+...+++.|....+.. +|+.+.....|+++.. +..||+...+
T Consensus 3 ~m~~v~~~~~~~--~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~-iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 3 YMESFVQYWKEN--GILENINKNLLLLVQG-EDGKETGKLLEKYVEACENA-ILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred HHHHHHHHHHHc--CchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCE-EEEEccceecceecCCCCeeEEEEEecC
Confidence 455555565544 32 3444555 44446899999999743323 4455555899999985 6789999866
Q ss_pred C-CCC
Q 047506 84 W-SPV 87 (947)
Q Consensus 84 W-NPa 87 (947)
| ||.
T Consensus 79 fp~~~ 83 (141)
T smart00492 79 FPYPD 83 (141)
T ss_pred CCCCC
Confidence 5 554
No 127
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=78.21 E-value=3.3 Score=51.97 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=38.5
Q ss_pred ceeEEecCCCCCCchhHHhh--hccCCCCcceEEEEEEecCCCHHHHHHHHHHhCC
Q 047506 75 HAVIIFHSDWSPVNDLRALQ--RITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128 (947)
Q Consensus 75 dtVIifDpdWNPa~DlQAId--RaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl 128 (947)
+.||+|||+ ......|. |++|-|.. ++||-|+..+|+||.-|-.+.+|.
T Consensus 478 ~~VImYEP~---~sfIR~IEvyra~r~~r~--~rVyfL~y~~S~EEq~yl~sirrE 528 (814)
T TIGR00596 478 RYVIMYEPD---ISFIRQLEVYKASRPLRP--LRVYFLYYGGSIEEQRYLTSLRRE 528 (814)
T ss_pred CEEEEECCC---hHHHHHHHHHHccCCCCC--cEEEEEEECCcHHHHHHHHHHHHH
Confidence 899999998 33445555 77777764 999999999999999887665554
No 128
>COG1204 Superfamily II helicase [General function prediction only]
Probab=78.15 E-value=2.4 Score=52.77 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=50.6
Q ss_pred eCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC-CC---------CCchhHHhhhccCCCCc
Q 047506 34 DGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD-WS---------PVNDLRALQRITLDPQL 102 (947)
Q Consensus 34 DGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd-WN---------Pa~DlQAIdRaHRIGQk 102 (947)
+.+++...|+-+=+.|..+. + -+|++|..-..|.||. |.+|||-|.. |+ +....|-+|||+|.|=-
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~-i-kVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGK-I-KVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCC-c-eEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 67899999999999998753 3 4556778888899987 6777776544 44 45566999999999754
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=77.24 E-value=9.6 Score=48.37 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=54.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcc--ceeE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV--HAVI 78 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaA--dtVI 78 (947)
||||.+- .+|..+.++|......-.+..+.-++....|.+++++|....+ .|+| -+.+...|+++.+. ..||
T Consensus 756 LVLFtSy----~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~-~iLl-G~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 756 LVLFTSY----EMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK-AILL-GTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred EEEECCH----HHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC-eEEE-ecCcccCccccCCCceEEEE
Confidence 4666666 8888888888754211123333323333468999999997432 3444 46777899999974 8899
Q ss_pred EecCCC-CCC
Q 047506 79 IFHSDW-SPV 87 (947)
Q Consensus 79 ifDpdW-NPa 87 (947)
|.-.++ +|.
T Consensus 830 I~kLPF~~p~ 839 (928)
T PRK08074 830 IVRLPFAPPD 839 (928)
T ss_pred EecCCCCCCC
Confidence 998888 554
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=77.12 E-value=9.1 Score=48.57 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=75.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccC-cCccCCC------c
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRAC-RPSIKLS------S 73 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAG-G~GLNLt------a 73 (947)
||.+.+. ..-+.|..+|... |+++..++...- +|.+.|=. +.+....|.+++.-|| |.-|.|. +
T Consensus 430 LVgT~SI----e~SE~ls~~L~~~--gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 430 LIGTAQV----EDSETLHELLLEA--NIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcC
Confidence 4556666 7788999999988 999999998633 44444433 3454556666664444 3444443 2
Q ss_pred cceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHH
Q 047506 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 74 AdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ 123 (947)
.=|||..+.+=+-..|.|..||++|-|..=....|= |+|..++.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 239999999989999999999999999986655442 455555543
No 131
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.65 E-value=4.5 Score=47.57 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHH
Q 047506 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRA 92 (947)
Q Consensus 13 mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQA 92 (947)
-...+...|+.. |+...-|.|++....|...+..|+... .-+|+.|+.+.-|+...--|+||.||.+=.|..-...
T Consensus 273 hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k--~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhR 348 (529)
T KOG0337|consen 273 HVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRK--TSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHR 348 (529)
T ss_pred hHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCc--cceEEEehhhhccCCCccccccccccCCCCCceEEEE
Confidence 344555556654 888889999999999999999998743 3477889999999999999999999999899888888
Q ss_pred hhhccCCCCcceEEEEEEecCC
Q 047506 93 LQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 93 IdRaHRIGQkK~V~VyRLVT~n 114 (947)
.||+.|-|.+ -..|-||+..
T Consensus 349 Vgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 349 VGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred ecchhhcccc--ceEEEEEecc
Confidence 8888888753 4567777654
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=75.65 E-value=5.6 Score=50.78 Aligned_cols=90 Identities=16% Similarity=0.022 Sum_probs=67.2
Q ss_pred eCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC-CCCCchhHHhhhccCCCCcceEEEEEEec
Q 047506 34 DGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD-WSPVNDLRALQRITLDPQLEQIKVFRLYS 112 (947)
Q Consensus 34 DGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd-WNPa~DlQAIdRaHRIGQkK~V~VyRLVT 112 (947)
+.++....|+.+=--|..+ .-..|.+|+..++|||+.+-..|+.-|+- .||.+..|+-|||+|-|=-.-=+|.-+=.
T Consensus 969 HaglNr~yR~~VEvLFR~g--~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fmgi 1046 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFRQG--HLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGI 1046 (1330)
T ss_pred ccccchHHHHHHHHHhhcC--ceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeC
Confidence 5577888899888888764 35567788999999999988777777765 79999999999999999766555554433
Q ss_pred CCCHHHHHHHHHHhCC
Q 047506 113 FCTVEEKVLILAKQDK 128 (947)
Q Consensus 113 ~nTVEEkIlq~ak~Kl 128 (947)
+ -.+|+.+.-.++
T Consensus 1047 P---~~kv~rLlts~L 1059 (1330)
T KOG0949|consen 1047 P---RQKVQRLLTSLL 1059 (1330)
T ss_pred c---HHHHHHHHHHhh
Confidence 3 345655554443
No 133
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=72.83 E-value=42 Score=38.29 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=34.3
Q ss_pred ccchhhhhchHHHHHHHHHHHHhHHH-----------HHHhHHHHHHHHH--------hhhhhhhhhhHHHHHHHHH
Q 047506 524 MQMDKLKVLENEYAEKFKELERDRDV-----------RLENLEALHVASM--------KKLSDKQTSWVEQVKSWLQ 581 (947)
Q Consensus 524 ~~~dklk~l~~e~~k~f~el~~~~d~-----------~lk~l~~~~la~r--------~k~~e~ka~w~e~~ks~~~ 581 (947)
.|.+.+-=++.+|.+..++|.++++. ++..|. ..++.| .++......|+.++++...
T Consensus 83 ~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~-~~l~~~l~~~~~~y~~~d~~q~dw~~G~~~a~~ 158 (332)
T TIGR01541 83 ERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIK-AALNEALAELHAYYAAEDALQGDWLAGARSGLA 158 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35666666778888888888888653 222221 112222 2334456789999987654
No 134
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.47 E-value=17 Score=44.67 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh-----cCCCcEEEEeCCCCHHHHHHHHHhhhcC--CC-ceEEEEec-ccCcCccCC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR-----FGSDSYERVDGNVLDSKKKAALQNFNNG--SG-RFVFLLET-RACRPSIKL 71 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r-----f~Gi~y~RLDGsts~~eRq~aId~FN~d--s~-~fVFLLST-rAGG~GLNL 71 (947)
||||-+- .+|+.+-+++... ......+-+.+.-. .++..++++|... .+ ..||+... .....||++
T Consensus 526 lvfFpSy----~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 526 VVFFPSY----SYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred EEEccCH----HHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 4676666 7777776666532 00112344455432 6889999999751 22 23444332 345799999
Q ss_pred Cc--cceeEEecCCC-CCC
Q 047506 72 SS--VHAVIIFHSDW-SPV 87 (947)
Q Consensus 72 ta--AdtVIifDpdW-NPa 87 (947)
.. +..||++..++ ||.
T Consensus 601 ~~~~~r~ViivGlPf~~~~ 619 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTE 619 (705)
T ss_pred CCCCCcEEEEEccCCCCCC
Confidence 95 79999999887 654
No 135
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=72.11 E-value=16 Score=45.82 Aligned_cols=110 Identities=14% Similarity=0.003 Sum_probs=77.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccC-cCccCCC-------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRAC-RPSIKLS------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAG-G~GLNLt------- 72 (947)
||.+++. ..-+.|...|... |+++..|+..-...+ ..+|.+- +..-.|.+++.-|| |.-|.|.
T Consensus 431 LVgt~sI----~~SE~ls~~L~~~--gI~h~vLNAk~~~~E-A~IIa~A--G~~gaVTIATNMAGRGTDIkLg~~~~~~~ 501 (764)
T PRK12326 431 LVGTHDV----AESEELAERLRAA--GVPAVVLNAKNDAEE-ARIIAEA--GKYGAVTVSTQMAGRGTDIRLGGSDEADR 501 (764)
T ss_pred EEEeCCH----HHHHHHHHHHHhC--CCcceeeccCchHhH-HHHHHhc--CCCCcEEEEecCCCCccCeecCCCcccch
Confidence 4566666 7788999999988 999999998744322 3344432 33345666665554 4445554
Q ss_pred ------ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH
Q 047506 73 ------SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 73 ------aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
+.=|||.-...=+-..|.|..||++|-|+.=....|- |.|..++.+-
T Consensus 502 ~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 502 DRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred HHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 4558999988889999999999999999986655442 5666666543
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.70 E-value=24 Score=44.23 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHH--HHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCC---CCCCc
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKK--KAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD---WSPVN 88 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eR--q~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpd---WNPa~ 88 (947)
...+++-|...|++.++.|+|+.+..... ..+++.|.++. -.+|+-|+.-.-|++...-.-|.++|.| .+|.-
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge--~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE--ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC--CCeeecchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 46778888888999999999999987553 45788998754 2477788999999999999999888777 24432
Q ss_pred h---------hHHhhhccCCCCcceEEEEEEecCCC
Q 047506 89 D---------LRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 89 D---------lQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
. .|+-|||+|-+-.-.|.|--..-...
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 2 39999999997766676655554443
No 137
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=70.37 E-value=28 Score=28.96 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=46.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChh
Q 047506 336 MAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHK 396 (947)
Q Consensus 336 isKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~ 396 (947)
|..+|..+++|..+..++..|++-.+..+.+.+. -.|..-++-.|+|+.+.+...-.+
T Consensus 3 l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~---~~~~ia~a~l~lA~k~~~~~~~~~ 60 (83)
T smart00385 3 LRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKY---SPSLIAAAALYLAAKTEEIPPWTK 60 (83)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHHHhcCCCCch
Confidence 5678999999999999999999999998887775 445555677788988887664333
No 138
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=70.34 E-value=21 Score=31.07 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcccc-cCChhhHHHHHHHHHHHHHhhhhccCChhhhH
Q 047506 336 MAKLCEVLKLREDVKDTVGKFLEYLMINHRVD-REPPSMLQAFEISLCWTAASLRKQKIDHKESL 399 (947)
Q Consensus 336 isKLceIL~LPenVK~mv~~fLEYv~~Nh~v~-~ep~silqAF~islcW~aAsl~~~k~d~~~sl 399 (947)
|..+|+-|.||++|...|.+++.-+.+-.-+. +.|.++.- +.-++|+.+.++....+|-.
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaA----A~iY~acr~~~~~~t~~eIa 61 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAA----ACIYLACRLNGVPRTLKEIA 61 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHH----HHHHHHHHHTTSSSSHHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHH----HHHHHHHHHcCCCcCHHHHH
Confidence 67899999999999999999999987766543 66766654 44566677777777766544
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.94 E-value=93 Score=39.08 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=61.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-Hhc--cccccchhhhhchHH
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIR-YHC--NGKMQMDKLKVLENE 535 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr-~~~--n~~~~~dklk~l~~e 535 (947)
.+|...+.+.++-++..-++|+.+|.+.+++ +..++.+-+..-.++|+.......+.+ ... +.. +.++.+|..
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l--~~~~P~LS~- 632 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL--NSQLPVLSE- 632 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCCCCH-
Confidence 6778888888888888888999999888874 777766665555555554443333322 211 222 234566665
Q ss_pred HHHHH-HHHHHhHHHHHHhHHHHHHHHHhhh
Q 047506 536 YAEKF-KELERDRDVRLENLEALHVASMKKL 565 (947)
Q Consensus 536 ~~k~f-~el~~~~d~~lk~l~~~~la~r~k~ 565 (947)
+++.| +||+ .|...|+.|...=-..+.|+
T Consensus 633 AEr~~~~EL~-~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 633 AEREFKKELE-RMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44444 4665 56666776654433344444
No 140
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=69.28 E-value=9 Score=48.41 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-CCCchhHHhhhccCCCCcceEE
Q 047506 28 DSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-SPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 28 i~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-NPa~DlQAIdRaHRIGQkK~V~ 106 (947)
.....+.|++...+|.++...|..+. ..++++|-|.=+|+.+-..|.||.+.-+= .-+.-.|..||++|-||. ..
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~--~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~--~l 414 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGE--LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQE--SL 414 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCC--ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCC--ce
Confidence 56888999999999999999998854 45788899999999999999999988665 335556888888888843 33
Q ss_pred EEEEecCCCHHHHHHH
Q 047506 107 VFRLYSFCTVEEKVLI 122 (947)
Q Consensus 107 VyRLVT~nTVEEkIlq 122 (947)
++-.+-.+-++..++.
T Consensus 415 ~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 415 VLVVLRSDPLDSYYLR 430 (851)
T ss_pred EEEEeCCCccchhhhh
Confidence 3333437777776654
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.38 E-value=41 Score=42.40 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHhc
Q 047506 499 EEQKAQLETKKRTEAAVIRYHC 520 (947)
Q Consensus 499 e~~ka~le~~~~~e~avIr~~~ 520 (947)
|--+.+||+..+.||.-+|..-
T Consensus 399 Eaar~ElEkqRqlewErar~qe 420 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999876
No 142
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.77 E-value=83 Score=37.73 Aligned_cols=93 Identities=19% Similarity=0.407 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHH-HHHHhHHHHHHhHHH
Q 047506 478 KQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFK-ELERDRDVRLENLEA 556 (947)
Q Consensus 478 kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~-el~~~~d~~lk~l~~ 556 (947)
++.+++....+.++.++++.|+++.. ..-+...++|.-+-....+..++++ ..+|.+.++ .+..+.+-|+.+|.+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~---~eL~~~~~~~~~~l~~~l~~~~~e~-~~~~~~~i~~~v~~Er~~~~~~l~~ 382 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR---QELKRQEEAHEEHLKNELREQAIEL-QREFEKEIKEKVEQERNGRLAKLAE 382 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544322 1222223334444422233334433 334666665 578888899999988
Q ss_pred HHHHHHhhhhhhhhhhHHH
Q 047506 557 LHVASMKKLSDKQTSWVEQ 575 (947)
Q Consensus 557 ~~la~r~k~~e~ka~w~e~ 575 (947)
+... .+-|.+.-..|-+.
T Consensus 383 ~~~~-~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 383 LNSR-LKALEEALDARSEA 400 (582)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 7543 34444433344433
No 143
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=66.69 E-value=6.5 Score=49.31 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCHHHHHH-----------HHHhhhcCCCceEEEEecccCcCccCCCcccee--------EEecCCCCCC
Q 047506 27 SDSYERVDGNVLDSKKKA-----------ALQNFNNGSGRFVFLLETRACRPSIKLSSVHAV--------IIFHSDWSPV 87 (947)
Q Consensus 27 Gi~y~RLDGsts~~eRq~-----------aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtV--------IifDpdWNPa 87 (947)
|--+.+=||++..+.|.. -..+|-++.. .|-++| .|+..||.||+--+| |-++.+|...
T Consensus 820 GrvV~te~g~v~ye~R~e~dvsld~vN~~EKqrFM~GeK-~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSAD 897 (1300)
T KOG1513|consen 820 GRVVSTEDGTVAYESRAEQDVSLDLVNLREKQRFMDGEK-LVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSAD 897 (1300)
T ss_pred ceeEecCCCceeeecccccCCChhhcchHHHhhhccccc-eeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchh
Confidence 334445567666666643 3456766543 455666 888999999988777 7789999999
Q ss_pred chhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHH
Q 047506 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 88 ~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ 123 (947)
.-+|-.||.||-.|..--.+..||+.---|.+-...
T Consensus 898 rAIQQFGRTHRSNQVsaPEYvFlIseLAGErRFAS~ 933 (1300)
T KOG1513|consen 898 RAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASI 933 (1300)
T ss_pred HHHHHhcccccccccCCCeEEEEehhhccchHHHHH
Confidence 999999999999999887777788776666665543
No 144
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.31 E-value=15 Score=45.67 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhh----cCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEEec----C
Q 047506 12 SLGDILDDFVRQR----FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFH----S 82 (947)
Q Consensus 12 ~mLDILEdfL~~r----f~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIifD----p 82 (947)
-..++|.+-|.+. +.++.++.|...++.+-.. +-|+. ..+++=.++.|-.+-..|+..+--.||=.. .
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 4566777666643 2257788888888765544 34775 555666666777778888888877776332 2
Q ss_pred CCCCCch-----------hHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH---HhCCChhhhhh
Q 047506 83 DWSPVND-----------LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA---KQDKTPDGYAQ 135 (947)
Q Consensus 83 dWNPa~D-----------lQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a---k~Kl~Ld~~Vi 135 (947)
-+||..- .+|-.|++|-|.+.+=..|||+|+.+....|+..- -+...+.+.|.
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 3676554 37888999999999999999999999998887521 12335555553
No 145
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=65.76 E-value=24 Score=45.31 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=71.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHH-HHHHhhhcCCCceEEEEecccC-cCccCCC------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKK-AALQNFNNGSGRFVFLLETRAC-RPSIKLS------ 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq-~aId~FN~ds~~fVFLLSTrAG-G~GLNLt------ 72 (947)
||-+++. ..-++|...|... |+++..++-.-. ++. .+|.+ .+....|-+++.-|| |.-|.|.
T Consensus 572 Ligt~si----~~se~ls~~L~~~--gi~h~vLNak~~--~~Ea~iia~--AG~~g~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 572 LIGTESV----EVSEKLSRILRQN--RIEHTVLNAKNH--AQEAEIIAG--AGKLGAVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred EEEeCcH----HHHHHHHHHHHHc--CCcceecccchh--hhHHHHHHh--cCCCCcEEEeeccccCCcccccCchHHhc
Confidence 3445555 7778899999988 999999887633 333 33332 243445666555554 4445554
Q ss_pred ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 73 aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
+.=|||.-..+=+...|.|..||++|-|..-....|- |.|..++.
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~ 686 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMR 686 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHH
Confidence 4458999999999999999999999999976544331 44555543
No 146
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=64.65 E-value=40 Score=33.64 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCC----cEEEEeCCCCHHHHHHHHHhhhcCCC-ceEEEEeccc--CcCccCCCc--cceeEEecCC
Q 047506 13 LGDILDDFVRQRFGSD----SYERVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRA--CRPSIKLSS--VHAVIIFHSD 83 (947)
Q Consensus 13 mLDILEdfL~~rf~Gi----~y~RLDGsts~~eRq~aId~FN~ds~-~fVFLLSTrA--GG~GLNLta--AdtVIifDpd 83 (947)
+|+.+-+++... +. ..+.+.+... .+...+++.|..... .-.+|+.+.. ...|+++.. +..||+...+
T Consensus 3 ~m~~v~~~~~~~--~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 3 YLEQVVEYWKEN--GILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHHhc--CccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 455555666543 22 3445556543 355899999997322 1123333333 589999986 6789998877
Q ss_pred C-CCC
Q 047506 84 W-SPV 87 (947)
Q Consensus 84 W-NPa 87 (947)
+ +|.
T Consensus 80 fp~~~ 84 (142)
T smart00491 80 FPNPD 84 (142)
T ss_pred CCCCC
Confidence 5 454
No 147
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.91 E-value=48 Score=37.49 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHH-HH--HHhHHHHHHhHHH-
Q 047506 481 AKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFK-EL--ERDRDVRLENLEA- 556 (947)
Q Consensus 481 ~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~-el--~~~~d~~lk~l~~- 556 (947)
+.|-|+.+|+|.++...-|.+. -|.+.+.|+.-.--.. -|.+-.|+|.-+|.|.=. |+ +++....|++=++
T Consensus 334 qeleqmaeeekkr~eeaeerqr--aeekeq~eaee~~ra~---kr~egvkllkf~fekieareerrkqkeeeklk~e~qk 408 (445)
T KOG2891|consen 334 QELEQMAEEEKKREEEAEERQR--AEEKEQKEAEELERAR---KREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQK 408 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444555444443322222 2234444544332222 445557888888876543 22 2233344554444
Q ss_pred -HHHHHHhhhhhh
Q 047506 557 -LHVASMKKLSDK 568 (947)
Q Consensus 557 -~~la~r~k~~e~ 568 (947)
++|...-|++++
T Consensus 409 ikeleek~~eeed 421 (445)
T KOG2891|consen 409 IKELEEKIKEEED 421 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 555555555553
No 148
>PRK12704 phosphodiesterase; Provisional
Probab=63.43 E-value=1.6e+02 Score=35.70 Aligned_cols=9 Identities=11% Similarity=-0.293 Sum_probs=4.1
Q ss_pred eeecCCCCC
Q 047506 766 TVSSNDDLE 774 (947)
Q Consensus 766 t~s~~d~~e 774 (947)
+.=+||.+-
T Consensus 364 AgLLHDIGK 372 (520)
T PRK12704 364 AGLLHDIGK 372 (520)
T ss_pred HHHHHccCc
Confidence 344455443
No 149
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.98 E-value=1e+02 Score=37.10 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEK-KDIDKRYEEQKAQLETKKR 510 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek-~~~~~~~e~~ka~le~~~~ 510 (947)
.-.+..|.+-+..++++.+.+++.=+.+|.+.. ++|++....+..++++++.
T Consensus 310 ~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~ 362 (582)
T PF09731_consen 310 EELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFE 362 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888886666666554 4456666666666666554
No 150
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.48 E-value=2.3e+02 Score=35.33 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=83.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHhccccccc
Q 047506 457 LFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV----------IRYHCNGKMQM 526 (947)
Q Consensus 457 ~~~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~av----------Ir~~~n~~~~~ 526 (947)
+++|+++.. +.|++-+|...+|.+.-.-.+++.++++..+.-..+++-.+.+.....+ -+-..+..-++
T Consensus 63 h~~l~~~l~-~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~k~~~~~ 141 (611)
T KOG2398|consen 63 HLELSRELQ-DLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEKEKRKKEL 141 (611)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHH
Confidence 455555432 4566777666666666666666665555544333322211111111111 11112222233
Q ss_pred hhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHH--HHHHhhhcCCCCCCCCCCchhhHHHHh
Q 047506 527 DKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK--SWLQIQLSNKPSSNEYGHSVECLQAVE 604 (947)
Q Consensus 527 dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e~ka~w~e~~k--s~~~~el~~~~~~~e~g~~~e~~~~~~ 604 (947)
.|.++.-.++.+-.+.+.-+++-=.++.++.+..+=.|||+..-.=+.-+| .|+....+. +.|+. ..|.|+
T Consensus 142 ~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is-----~~~~~--~~q~~E 214 (611)
T KOG2398|consen 142 AKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQIS-----ESCVK--IDQVME 214 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhccc--hhHHHH
Confidence 444444444555555555566666677778888888888887665443333 465555442 33333 333433
Q ss_pred hhccccccccccccccccccCCCcccccceeccccCCCC
Q 047506 605 QHNAHENLENNASNSIHISAGQNHDKLINIITPVSGEGR 643 (947)
Q Consensus 605 q~~~~~~l~n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 643 (947)
+. |+. -++-.++.+|.-.-+-.|-|+
T Consensus 215 ~~------k~~-------le~~sv~~~i~~fv~~k~TGt 240 (611)
T KOG2398|consen 215 EF------KLT-------LESCSVDEDITKFVEAKGTGT 240 (611)
T ss_pred HH------HHh-------hccCCHHHHHHHHhhccCCCC
Confidence 33 222 356677777765555544444
No 151
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=60.15 E-value=1.8e+02 Score=31.20 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHH
Q 047506 477 QKQMAKLRHKQLEEKKDIDKRYEE------------QKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELE 544 (947)
Q Consensus 477 ~kq~~kl~~~q~eek~~~~~~~e~------------~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~ 544 (947)
..||++|-...+-|+.++.++.+. +|+++++.++ .|.+.|.+-+ +.=++-|...|.+.-++|.
T Consensus 55 ~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~k~~~dK~e~er~Kr---Ein~s~I~e~--V~~ikrL~~~qekrqekL~ 129 (185)
T PF08703_consen 55 AAQLKKLKETCEKETKELKKKLDRKRLESIKEKKTKDKDEQERLKR---EINRSHIQEV--VQEIKRLEEKQEKRQEKLE 129 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhhcccHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345656555555555555555443 4555554432 3456666544 4557788888999999999
Q ss_pred HhHHHHHHhHHHHHH
Q 047506 545 RDRDVRLENLEALHV 559 (947)
Q Consensus 545 ~~~d~~lk~l~~~~l 559 (947)
.+|..+|..|+++--
T Consensus 130 ~kh~e~lq~i~ee~~ 144 (185)
T PF08703_consen 130 EKHEEVLQQIEEEEK 144 (185)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987643
No 152
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=57.99 E-value=37 Score=39.62 Aligned_cols=93 Identities=11% Similarity=0.266 Sum_probs=68.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+-.. .+|.-+...|...++......++.. ...|.+-+.+|.++. .-+|++|...--|.+....|..++=
T Consensus 309 liF~p~I----~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~--~~lLiTTTILERGVTfp~vdV~Vlg 380 (441)
T COG4098 309 LIFFPEI----ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGK--ITLLITTTILERGVTFPNVDVFVLG 380 (441)
T ss_pred EEEecch----HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCc--eEEEEEeehhhcccccccceEEEec
Confidence 4777777 7888888888765555554444433 246999999999853 5688899999999999999988875
Q ss_pred cCC--CCCCchhHHhhhccCCCC
Q 047506 81 HSD--WSPVNDLRALQRITLDPQ 101 (947)
Q Consensus 81 Dpd--WNPa~DlQAIdRaHRIGQ 101 (947)
... +.-+.-.|--||++|-=-
T Consensus 381 aeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 381 AEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred CCcccccHHHHHHHhhhccCCCc
Confidence 544 555666688888888533
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=55.05 E-value=63 Score=40.11 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=52.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcC---CCceEEEEecccCcCccCCCc--cc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNG---SGRFVFLLETRACRPSIKLSS--VH 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~d---s~~fVFLLSTrAGG~GLNLta--Ad 75 (947)
||||.+- .+|..+..+|...+ +. -+...|. ..|.++++.|... ....|++ .+..-..|+++.+ ..
T Consensus 538 LVlFtSy----~~l~~v~~~l~~~~-~~-~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 538 LVLFASR----RQMQKVADLLPRDL-RL-MLLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFAEGLDLPGDYLT 607 (697)
T ss_pred EEEeCcH----HHHHHHHHHHHHhc-CC-cEEEeCC---chHHHHHHHHHHHhccCCCeEEE-EeccccccccCCCCceE
Confidence 4666666 88888888887542 22 3445664 3578899888741 2233555 4577789999975 78
Q ss_pred eeEEecCCC-CCC
Q 047506 76 AVIIFHSDW-SPV 87 (947)
Q Consensus 76 tVIifDpdW-NPa 87 (947)
.|||.-.++ +|.
T Consensus 608 ~vII~kLPF~~p~ 620 (697)
T PRK11747 608 QVIITKIPFAVPD 620 (697)
T ss_pred EEEEEcCCCCCCC
Confidence 999999887 453
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.01 E-value=1.3e+02 Score=36.04 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhc
Q 047506 549 VRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLS 585 (947)
Q Consensus 549 ~~lk~l~~~~la~r~k~~e~ka~w~e~~ks~~~~el~ 585 (947)
.-|.+.--+-+++|+.|.+.-++-=|++-.|.|.|.+
T Consensus 390 sslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 390 SSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677889999999999999999999999975
No 155
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=51.58 E-value=29 Score=44.00 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=81.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCC---cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcccee
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSD---SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAV 77 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi---~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtV 77 (947)
|||+-.. ...+.|...|...|+.. -...|+|... +=++.|+.|...+....+.++....-.|++...+-.+
T Consensus 430 IvFa~n~----dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 430 IVFAKNH----DHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred EEEeeCc----HHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 5788777 77888888888776643 3667888765 4556799999866677788888999999999999999
Q ss_pred EEecCCCCCCchhHHhhhccCC-------CCcce-EEEEEEe
Q 047506 78 IIFHSDWSPVNDLRALQRITLD-------PQLEQ-IKVFRLY 111 (947)
Q Consensus 78 IifDpdWNPa~DlQAIdRaHRI-------GQkK~-V~VyRLV 111 (947)
+|+-.--.-..-.|-+||..|+ ||.|. ..||.++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9988887777788999999985 34333 6666664
No 156
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.80 E-value=27 Score=33.89 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhccccccchhhhhchHHHH
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLET-KKRTEAAVIRYHCNGKMQMDKLKVLENEYA 537 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~-~~~~e~avIr~~~n~~~~~dklk~l~~e~~ 537 (947)
..+++-+++.|..-++|-. -.++++++-...+.+-+++.+++|+ |..-+.+|-.+-- -|+.+.+.|+-.-.
T Consensus 12 ~~~~~p~~k~kskk~kK~~-----~~qk~~~~~~~~qeK~a~k~~Ere~~r~~R~e~~~aykK---kr~e~~kal~Krtk 83 (106)
T KOG4819|consen 12 GHNQKPYFKNKNNQKAKGE-----KPNKPEIRNMKRQEKAAQKAAEREKVRADRDEQVKAYKK---KRLEKTKALSKRTK 83 (106)
T ss_pred hhccCCchhhhhHHhhccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHhcc
Confidence 4477888887766555422 2456666666666677788888888 5566665544433 56677777777666
Q ss_pred HHHHHHHHhHHHHHHhHHHH
Q 047506 538 EKFKELERDRDVRLENLEAL 557 (947)
Q Consensus 538 k~f~el~~~~d~~lk~l~~~ 557 (947)
|+=--|.-||+.-|+.++++
T Consensus 84 KGQPnln~qM~~LL~~IqEk 103 (106)
T KOG4819|consen 84 KGQPNLNDQMQLLLKQIQEK 103 (106)
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 66668999999998877754
No 157
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.26 E-value=2.1e+02 Score=37.14 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=16.9
Q ss_pred chhhhhchHHHHHHHHHHHHhHHHHHHhHHHH
Q 047506 526 MDKLKVLENEYAEKFKELERDRDVRLENLEAL 557 (947)
Q Consensus 526 ~dklk~l~~e~~k~f~el~~~~d~~lk~l~~~ 557 (947)
+.-.|-|...+.|-.++|..++..+|..|.++
T Consensus 1134 V~e~krL~~~~~k~~e~L~k~~~~~leql~e~ 1165 (1189)
T KOG1265|consen 1134 VEERKRLAEKQSKRQEQLVKKHLEVLEQLAEE 1165 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555544
No 158
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=50.08 E-value=41 Score=33.74 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=55.1
Q ss_pred EEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEec
Q 047506 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFH 81 (947)
Q Consensus 2 IFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifD 81 (947)
++||+. .+...+-+++..+--|+++..-.|+-..-.=...++.|.+++...++++.....
T Consensus 6 lisQSG----~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~---------------- 65 (138)
T PF13607_consen 6 LISQSG----ALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGI---------------- 65 (138)
T ss_dssp EEES-H----HHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES------------------
T ss_pred EEECCH----HHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCC----------------
Confidence 578888 888877778877633677788888877777888999999999888888765433
Q ss_pred CCCCCCchhHHhhhccCCCCcceEEEEEEe
Q 047506 82 SDWSPVNDLRALQRITLDPQLEQIKVFRLY 111 (947)
Q Consensus 82 pdWNPa~DlQAIdRaHRIGQkK~V~VyRLV 111 (947)
=||..-.++..|+.|- |||.+|+-=
T Consensus 66 --~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 66 --GDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp --S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred --CCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 3566666777777665 999998764
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=49.69 E-value=1.1e+02 Score=36.59 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCc-CccCCCccceeEEecCCCCCCchhHHh
Q 047506 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACR-PSIKLSSVHAVIIFHSDWSPVNDLRAL 93 (947)
Q Consensus 15 DILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG-~GLNLtaAdtVIifDpdWNPa~DlQAI 93 (947)
-.|..||+.. +++|+.++--++..+-.++-..|..+ ...++|.+-|+-= -=..+.++.+||||.|+=+|.-....+
T Consensus 314 VRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~ 390 (442)
T PF06862_consen 314 VRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELL 390 (442)
T ss_pred HHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHH
Confidence 3467888877 99999999999999999999999986 4677887766632 344677899999999999999988777
Q ss_pred hhccCCCC----cceEEEEEEec
Q 047506 94 QRITLDPQ----LEQIKVFRLYS 112 (947)
Q Consensus 94 dRaHRIGQ----kK~V~VyRLVT 112 (947)
.-...-.+ .....|.-|++
T Consensus 391 n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 391 NMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred hhhcccccccccccCceEEEEec
Confidence 55444333 33445555554
No 160
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.36 E-value=9.7 Score=42.59 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=41.0
Q ss_pred EEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcc
Q 047506 59 LLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLE 103 (947)
Q Consensus 59 LLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK 103 (947)
|..|..-|-|+..-..|.||.||.+-.|...+...+||+|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 456777899999999999999999999999999999999999754
No 161
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=48.31 E-value=42 Score=42.82 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhhhcCCCc-eEEEEecccCcCccCCCccceeEEec----CCCC
Q 047506 12 SLGDILDDFVRQRF-GSDSYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFH----SDWS 85 (947)
Q Consensus 12 ~mLDILEdfL~~rf-~Gi~y~RLDGsts~~eRq~aId~FN~ds~~-fVFLLSTrAGG~GLNLtaAdtVIifD----pdWN 85 (947)
.+..+|++ .++ ..+..+.+.|.++..+..+ -|+..+.. +=++++|..+=.+|+..+.-.||=-. +-||
T Consensus 274 ~~~~~L~~---~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~ 347 (845)
T COG1643 274 RTAEWLEK---AELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYD 347 (845)
T ss_pred HHHHHHHh---ccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccc
Confidence 45555555 123 3688999999999988776 56663333 33677889999999998877776332 2467
Q ss_pred CCchh-----------HHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 86 PVNDL-----------RALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 86 Pa~Dl-----------QAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
|.... .|..|++|-|-+.+=.+|||++++..+
T Consensus 348 ~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 348 PRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 76655 478899999999999999999986555
No 162
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.75 E-value=2.6e+02 Score=33.97 Aligned_cols=114 Identities=17% Similarity=0.295 Sum_probs=69.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHH-----------HHHHhccccc
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL---ETKKRTEAA-----------VIRYHCNGKM 524 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~l---e~~~~~e~a-----------vIr~~~n~~~ 524 (947)
-|-|+|+.|..+++++- ----+|.||.-.-||.-|+...++-|++. ..||.+|.- +=+..|---+
T Consensus 382 iLEKnd~~k~lqnLqe~-la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKee 460 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEA-LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEE 460 (527)
T ss_pred hhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 57788888888888844 56677888888888888888888888764 555555432 1122221112
Q ss_pred cchhhhhchHHHH----HHHHHHHHhHHHHHHhH----------HHHHHHHHhhhhhhhhhhH
Q 047506 525 QMDKLKVLENEYA----EKFKELERDRDVRLENL----------EALHVASMKKLSDKQTSWV 573 (947)
Q Consensus 525 ~~dklk~l~~e~~----k~f~el~~~~d~~lk~l----------~~~~la~r~k~~e~ka~w~ 573 (947)
-+..|.-|.-+-. .-++-||++.+.|=..+ |...|+.|+||.-+=.--|
T Consensus 461 everLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 461 EVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2334444444443 34456777777664444 3444666777665444333
No 163
>PRK00106 hypothetical protein; Provisional
Probab=46.19 E-value=4.6e+02 Score=32.30 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=5.2
Q ss_pred cccCCcccccc
Q 047506 848 NVNSSHGLENA 858 (947)
Q Consensus 848 ~v~s~~g~en~ 858 (947)
|++|-.|.+.+
T Consensus 466 ia~~~~gV~~~ 476 (535)
T PRK00106 466 IANSFDGVQNS 476 (535)
T ss_pred HHhcCCcHHHH
Confidence 44444454444
No 164
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.75 E-value=2.8e+02 Score=31.33 Aligned_cols=93 Identities=17% Similarity=0.394 Sum_probs=48.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHH
Q 047506 462 QKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFK 541 (947)
Q Consensus 462 ~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~ 541 (947)
.+-+...|+.++..+ .++++.+..-..+-..|..++|..+++||+.++ |+.+ .+.=+=--+ +||.+.-.
T Consensus 164 E~~l~~ai~~~~~~~-~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK------RL~s---Lq~vRPAfm-dEyEklE~ 232 (267)
T PF10234_consen 164 EKALKEAIKAVQQQL-QQTQQQLNNLASDEANLEAKIEKKKQELERNQK------RLQS---LQSVRPAFM-DEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH---HHhcChHHH-HHHHHHHH
Confidence 333444444444332 223333333344555677888888888877655 5555 111111122 34666666
Q ss_pred HHHHhHHH---HHHhHH--HHHHHHHhhh
Q 047506 542 ELERDRDV---RLENLE--ALHVASMKKL 565 (947)
Q Consensus 542 el~~~~d~---~lk~l~--~~~la~r~k~ 565 (947)
||+.+++. |++||. +.||..+++-
T Consensus 233 EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 233 ELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77777664 555553 4455555443
No 165
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.49 E-value=4.7e+02 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=6.7
Q ss_pred HHHHhHHHHHHHHHhhhh
Q 047506 549 VRLENLEALHVASMKKLS 566 (947)
Q Consensus 549 ~~lk~l~~~~la~r~k~~ 566 (947)
...+.++++......+|.
T Consensus 122 e~~~e~~~~~~~~~~~le 139 (514)
T TIGR03319 122 EKEEELEELIAEQREELE 139 (514)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 166
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.00 E-value=3.4e+02 Score=34.54 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhc
Q 047506 456 ELFKVAQKDFSRSIRGIQKKCQKQMAKL---RHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532 (947)
Q Consensus 456 e~~~l~~kd~sk~ik~i~kkc~kq~~kl---~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l 532 (947)
++++--..++.+-|.+++++.. ++++. +...++|.+++++.|++++.+|+.+++. .++=+
T Consensus 509 ~~~~~~~~~~~~li~~l~~~~~-~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~----------------~~~~~ 571 (782)
T PRK00409 509 KLIGEDKEKLNELIASLEELER-ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK----------------LLEEA 571 (782)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Confidence 3444455567777777775522 22222 1223334445555555555555544332 23334
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHH
Q 047506 533 ENEYAEKFKELERDRDVRLENLEALH 558 (947)
Q Consensus 533 ~~e~~k~f~el~~~~d~~lk~l~~~~ 558 (947)
..++.+.+++.+++.+.-++.|.+++
T Consensus 572 ~~~a~~~l~~a~~~~~~~i~~lk~~~ 597 (782)
T PRK00409 572 EKEAQQAIKEAKKEADEIIKELRQLQ 597 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677777888888888788877653
No 167
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=44.91 E-value=46 Score=42.70 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=68.1
Q ss_pred EEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccC-cCccCCC--------
Q 047506 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRAC-RPSIKLS-------- 72 (947)
Q Consensus 2 IFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAG-G~GLNLt-------- 72 (947)
|-+.+. ..-+.|..+|..+ |+++..|+-... ++.+.|-. +.+....|.+++.-|| |.-|.|.
T Consensus 454 VGT~SV----e~SE~ls~~L~~~--gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~ 524 (913)
T PRK13103 454 VGTATI----ETSEHMSNLLKKE--GIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVA 524 (913)
T ss_pred EEeCCH----HHHHHHHHHHHHc--CCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHH
Confidence 444455 6778899999988 898887776533 33333322 3344456777766665 5555555
Q ss_pred ---------------------------ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 73 ---------------------------SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 73 ---------------------------aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
+.=|||.-...=+-..|.|..||++|-|..=....|
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 525 ALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 344889989999999999999999999997654443
No 168
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=44.89 E-value=1.6e+02 Score=24.57 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChh
Q 047506 334 PEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHK 396 (947)
Q Consensus 334 pEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~ 396 (947)
.-|..+|..+.+|..+..+|..|++-.+.-+.+... -.|..-++-.++|+.+.+....-+
T Consensus 7 ~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~ia~a~l~lA~k~~~~~~~~~ 66 (88)
T cd00043 7 DFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGR---SPSLVAAAALYLAAKVEEIPPWLK 66 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccC---ChHHHHHHHHHHHHHHcCCCCCHH
Confidence 457889999999999999999999999887777644 456666777788888777744444
No 169
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=44.04 E-value=38 Score=39.81 Aligned_cols=93 Identities=17% Similarity=0.049 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhH--
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLR-- 91 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQ-- 91 (947)
..-+...|... |+....++..+-+.+|..+-..|-.+ .+.|++. |-|-|.||.-....-||--..+-.-.+.-|
T Consensus 330 ~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~-eiqviva-tvafgmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 330 CEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVA-TVAFGMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred HHHHHHHHHhc--CccccccccccCcccccccccccccc-ceEEEEE-EeeecccCCCCCeeEEEecccchhHHHHHHHH
Confidence 67778888877 99999999999999999888888765 3555554 588899999988888887766655555567
Q ss_pred -----------------------------------------HhhhccCCCCcceEEEEEE
Q 047506 92 -----------------------------------------ALQRITLDPQLEQIKVFRL 110 (947)
Q Consensus 92 -----------------------------------------AIdRaHRIGQkK~V~VyRL 110 (947)
--||++|-||+-.+..|+-
T Consensus 406 arillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 406 ARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred HHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 3578999999988666553
No 170
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=43.63 E-value=48 Score=32.97 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047506 450 IVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLE 489 (947)
Q Consensus 450 ~~~~~~e~~~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~e 489 (947)
|+.-+=|+.+---|-+..+|+++|++|.||-.++.++|++
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~ 112 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQA 112 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666788899999999999999999999875
No 171
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=43.06 E-value=1.2e+02 Score=38.50 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=49.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--ccceeE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS--SVHAVI 78 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt--aAdtVI 78 (947)
||||.+. .+|..+.+.|... .++ +...|... .|.+++++|..++. .| |+-+.....|+.+. .+..||
T Consensus 651 LVLFtS~----~~l~~v~~~l~~~--~~~-~l~Qg~~~--~~~~l~~~F~~~~~-~v-LlG~~sFwEGVD~p~~~~~~vi 719 (820)
T PRK07246 651 LVLFNSK----KHLLAVSDLLDQW--QVS-HLAQEKNG--TAYNIKKRFDRGEQ-QI-LLGLGSFWEGVDFVQADRMIEV 719 (820)
T ss_pred EEEECcH----HHHHHHHHHHhhc--CCc-EEEeCCCc--cHHHHHHHHHcCCC-eE-EEecchhhCCCCCCCCCeEEEE
Confidence 4666666 8888888888754 333 35556433 36779999987432 34 44557788999996 356677
Q ss_pred EecCCC-CC
Q 047506 79 IFHSDW-SP 86 (947)
Q Consensus 79 ifDpdW-NP 86 (947)
|.-.++ +|
T Consensus 720 I~kLPF~~P 728 (820)
T PRK07246 720 ITRLPFDNP 728 (820)
T ss_pred EecCCCCCC
Confidence 877564 45
No 172
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.18 E-value=2.9e+02 Score=31.35 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHH
Q 047506 465 FSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELE 544 (947)
Q Consensus 465 ~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~ 544 (947)
+.+.++.+++..+...+. +..-+.|..++.+..++.+.+++...+.|....+... ++.+--.+|.+..+.++
T Consensus 48 ~~~el~~le~Ee~~l~~e-L~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n-------~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQE-LEELEKEREELDQELEELEEELEELDEEEEEYWREYN-------ELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334444444442222222 2333444556666666666666665555554444433 22222233445555555
Q ss_pred HhHHHHHHhH
Q 047506 545 RDRDVRLENL 554 (947)
Q Consensus 545 ~~~d~~lk~l 554 (947)
.|++.-.+.|
T Consensus 120 ~q~~~~~~~L 129 (314)
T PF04111_consen 120 NQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 173
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=41.16 E-value=44 Score=44.36 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=54.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-----ecCC---C---CCCchhHHhhhc
Q 047506 28 DSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII-----FHSD---W---SPVNDLRALQRI 96 (947)
Q Consensus 28 i~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi-----fDpd---W---NPa~DlQAIdRa 96 (947)
+.|..=+.++...+|...=+.|.++. .-.|.||..-.-|+||. |++||| |||. | .|...+|-+|||
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~--iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGH--IQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCc--eeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 45666788999999999999998753 34666889999999997 678887 4554 5 466677999999
Q ss_pred cCCC
Q 047506 97 TLDP 100 (947)
Q Consensus 97 HRIG 100 (947)
+|.+
T Consensus 685 grp~ 688 (1674)
T KOG0951|consen 685 GRPQ 688 (1674)
T ss_pred CCCc
Confidence 9975
No 174
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=39.38 E-value=66 Score=42.07 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHH-HHHhhhcCCCceEEEEecccC-cCccCCC------ccceeEEecCC
Q 047506 12 SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKA-ALQNFNNGSGRFVFLLETRAC-RPSIKLS------SVHAVIIFHSD 83 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~-aId~FN~ds~~fVFLLSTrAG-G~GLNLt------aAdtVIifDpd 83 (947)
..-.+|...|..+ |+++..|+...- +|.+ +|.+ .+....|-+++.-|| |.-|.|. +.=+||.-..+
T Consensus 639 e~SE~lS~~L~~~--gI~H~VLNAK~h--~~EAeIVA~--AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerh 712 (1112)
T PRK12901 639 EISELLSRMLKMR--KIPHNVLNAKLH--QKEAEIVAE--AGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERH 712 (1112)
T ss_pred HHHHHHHHHHHHc--CCcHHHhhccch--hhHHHHHHh--cCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCC
Confidence 6678889999988 888888876543 3333 3332 233445777666665 4555665 45789999999
Q ss_pred CCCCchhHHhhhccCCCCcceEEE
Q 047506 84 WSPVNDLRALQRITLDPQLEQIKV 107 (947)
Q Consensus 84 WNPa~DlQAIdRaHRIGQkK~V~V 107 (947)
=+...|.|..||++|-|..=....
T Consensus 713 eSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 713 ESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred CcHHHHHHHhcccccCCCCCcceE
Confidence 999999999999999999755443
No 175
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.10 E-value=5.4e+02 Score=32.85 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=28.0
Q ss_pred hhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhh
Q 047506 527 DKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSD 567 (947)
Q Consensus 527 dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e 567 (947)
.+.+-|+.+..+.+++++++.+.-++..+..--...+++++
T Consensus 555 ~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 555 EKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777888888888887777777665555555554
No 176
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=37.68 E-value=88 Score=29.18 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=38.3
Q ss_pred hhhhhchHHHHHHHHHHH--------------HhHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHH
Q 047506 527 DKLKVLENEYAEKFKELE--------------RDRDVRLENLEALHVASMKKLSDKQTSWVEQVK 577 (947)
Q Consensus 527 dklk~l~~e~~k~f~el~--------------~~~d~~lk~l~~~~la~r~k~~e~ka~w~e~~k 577 (947)
-||.-||.||.|+|+|-. -+|...+..+|.|--.--+||..+-...-|..|
T Consensus 10 akldrld~ef~kkm~eqn~kffadkpdestlspemkehyekfe~miqehtdkfnkkm~ehsehfk 74 (90)
T PF03037_consen 10 AKLDRLDAEFNKKMQEQNKKFFADKPDESTLSPEMKEHYEKFERMIQEHTDKFNKKMHEHSEHFK 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999998644 468889999999988777777765444444444
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.27 E-value=4.6e+02 Score=33.41 Aligned_cols=83 Identities=19% Similarity=0.365 Sum_probs=41.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhch
Q 047506 457 LFKVAQKDFSRSIRGIQKKCQKQMAKLRH---KQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLE 533 (947)
Q Consensus 457 ~~~l~~kd~sk~ik~i~kkc~kq~~kl~~---~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~ 533 (947)
+++-.+.++.+-|.+++.. .+++++... ..++|.+++++.|+++..+|+.+++.. ++=+.
T Consensus 505 ~~~~~~~~~~~li~~L~~~-~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~----------------~~~a~ 567 (771)
T TIGR01069 505 FYGEFKEEINVLIEKLSAL-EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK----------------KLELE 567 (771)
T ss_pred HHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Confidence 3444555666767666654 232322222 222333444445555555555443322 22334
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHH
Q 047506 534 NEYAEKFKELERDRDVRLENLEA 556 (947)
Q Consensus 534 ~e~~k~f~el~~~~d~~lk~l~~ 556 (947)
.++...+++.+++.+.-++.|.+
T Consensus 568 ~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 568 KEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666665
No 178
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=36.62 E-value=5.7e+02 Score=27.55 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHHHhHH
Q 047506 469 IRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRD 548 (947)
Q Consensus 469 ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~~~~d 548 (947)
=+.|++- .+|...-...-+.+++++...|+.....|+..- .+...+..+- ..+|+-|.+ |..++.+++
T Consensus 17 ~~~i~~L-~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qL-lq~~k~~~~l-----~~eLq~l~~-----~~~~k~~qe 84 (206)
T PF14988_consen 17 EKKIEKL-WKQYIQQLEEIQRERQELVSRYAKQTSELQDQL-LQKEKEQAKL-----QQELQALKE-----FRRLKEQQE 84 (206)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----HHHHHHhHH-----HHHHHHHHH
Confidence 3455533 344444445556788899999999999888632 2222222222 334444443 455566666
Q ss_pred HHHHhHHHHHHH
Q 047506 549 VRLENLEALHVA 560 (947)
Q Consensus 549 ~~lk~l~~~~la 560 (947)
..++.|+.....
T Consensus 85 ~eI~~Le~e~~~ 96 (206)
T PF14988_consen 85 REIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHH
Confidence 666666554443
No 179
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=36.55 E-value=2.5e+02 Score=29.64 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHhhhhccccccccCcccccccccchhhHHHHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHHH
Q 047506 414 EADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRG----IQKKCQKQMAKLRHKQLE 489 (947)
Q Consensus 414 ~~~~vy~~l~~~k~~f~~~~~~~~~~~s~~~~s~s~~~~~~~e~~~l~~kd~sk~ik~----i~kkc~kq~~kl~~~q~e 489 (947)
-..-.|-+||.|-..|.++ +|-|. ++|++-.+-+.+ .++.+++.++ ++ ++.+++..|...|+
T Consensus 53 i~~r~~l~~~kl~sylGle-KD~Se-------~~S~~K~Pf~~~----~k~~~~ifkegg~d~~-k~~~~l~~L~e~sn- 118 (163)
T PF03233_consen 53 IVGRNWLKLSKLLSYLGLE-KDPSE-------GLSKSKSPFESF----FKDLSKIFKEGGGDKQ-KQLKLLPTLEEISN- 118 (163)
T ss_pred HHHHHHHHHHHHHHHhccc-cCCcc-------ccccCCCcHHHH----HHHHHHHHHhcCCchh-hHHHHHHHHHHHHH-
Confidence 3456788999999999877 33222 122222222333 3556665543 44 66778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047506 490 EKKDIDKRYEEQKAQLETK 508 (947)
Q Consensus 490 ek~~~~~~~e~~ka~le~~ 508 (947)
++.+|+...-..+.++++.
T Consensus 119 ki~kLe~~~k~L~d~Iv~~ 137 (163)
T PF03233_consen 119 KIRKLETEVKKLKDNIVTE 137 (163)
T ss_pred HHHHHHHHHHhHhhhcccc
Confidence 4555544443333333333
No 180
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=36.44 E-value=3.9e+02 Score=26.37 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHH
Q 047506 481 AKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVA 560 (947)
Q Consensus 481 ~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la 560 (947)
++.....+.+.....+.++.+..+|..... . +-.+-.+-+-.+|.++-.+|++.....-++|....-.
T Consensus 42 ~~~~~~~~~~l~~~~~el~~~~~~l~~~~~-------~-----ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 42 QEKFKALQKELQAKQKELQKLQQKLQSQKA-------T-----LSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555444322 1 1122233334466777777777777777777777777
Q ss_pred HHhhhhhhhh
Q 047506 561 SMKKLSDKQT 570 (947)
Q Consensus 561 ~r~k~~e~ka 570 (947)
.++++.++=.
T Consensus 110 ~~~~i~~~i~ 119 (158)
T PF03938_consen 110 LLQPIQKKIN 119 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777533
No 181
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=36.24 E-value=1.9e+02 Score=28.43 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH---HHHhc-cccccchhhhhchHHHHHHHHHHHHhHHHHHHhHHH--HHHHHHh
Q 047506 490 EKKDIDKRYEEQKAQLETKKRTEAAV---IRYHC-NGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEA--LHVASMK 563 (947)
Q Consensus 490 ek~~~~~~~e~~ka~le~~~~~e~av---Ir~~~-n~~~~~dklk~l~~e~~k~f~el~~~~d~~lk~l~~--~~la~r~ 563 (947)
|.-+|+-.|-...-.|++-+.+-+-| |.--+ |++.--.+|-.||.-|-.+|..++++.+.-++.+.- +||.+|-
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~L 89 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRL 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666655555555 22223 466667888899999999999888888777777662 3455543
No 182
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.75 E-value=54 Score=40.72 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecc-----cCcCccCCCccceeEEecC------
Q 047506 14 GDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETR-----ACRPSIKLSSVHAVIIFHS------ 82 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTr-----AGG~GLNLtaAdtVIifDp------ 82 (947)
.+-+++.|...|++.++.|+|+. .+++.|.. ...+++. |+ +.| |+ .-|+++|.
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~~--~~~IlVG-Tqgaepm~~g-~~-----~lV~ildaD~~L~~ 503 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGGD-------QVVDTVDA--GPALVVA-TPGAEPRVEG-GY-----GAALLLDAWALLGR 503 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEEChH-------HHHHhhcc--CCCEEEE-CCCCcccccC-Cc-----eEEEEEcchhhhcC
Confidence 57788899988999999999975 37888863 4445554 44 222 22 34445544
Q ss_pred -CCCCCch-----hHHhhhccCCCCcceEEEE
Q 047506 83 -DWSPVND-----LRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 83 -dWNPa~D-----lQAIdRaHRIGQkK~V~Vy 108 (947)
|+.-.-. .|+.||++|-+..-.|.|-
T Consensus 504 pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 504 QDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred CCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 4443222 4999999997766667764
No 183
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.38 E-value=6e+02 Score=33.87 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=41.7
Q ss_pred hhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCCCCchhhH
Q 047506 527 DKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECL 600 (947)
Q Consensus 527 dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e~ka~w~e~~ks~~~~el~~~~~~~e~g~~~e~~ 600 (947)
+.++-+.+++.....++..+.|..+..+.+..-+.+.++.++ +.+++.|..++|..+ |.+...+
T Consensus 710 ~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~----~~~le~~~~~eL~~~------GvD~~~I 773 (1201)
T PF12128_consen 710 EQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQ----LKELEQQYNQELAGK------GVDPERI 773 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhC------CCCHHHH
Confidence 344455556666666677777777777777666666666664 457788889988554 6665433
No 184
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=34.56 E-value=5.4e+02 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=12.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQL 488 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~ 488 (947)
.-|++...+.+.+.+++.++..+....+.+
T Consensus 13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~ 42 (198)
T PRK03963 13 REAEQKIEYILEEAQKEAEKIKEEARKRAE 42 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 185
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=34.48 E-value=4.6e+02 Score=31.60 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=15.7
Q ss_pred ccccchhhHHHHHHHHHHHHHh
Q 047506 408 FSCKKGEADYVYSLLQCLKEVF 429 (947)
Q Consensus 408 f~c~~~~~~~vy~~l~~~k~~f 429 (947)
|+--|+|-+|+-++||+=-.+.
T Consensus 192 entlEQEqEalvN~LwKrmdkL 213 (552)
T KOG2129|consen 192 ENTLEQEQEALVNSLWKRMDKL 213 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4455778889999988755554
No 186
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=33.29 E-value=1.3e+02 Score=33.26 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=37.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047506 463 KDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRT 511 (947)
Q Consensus 463 kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~ 511 (947)
+..++.-.+--+...++++++.+.|+++.++..++|++...+.++.++.
T Consensus 7 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 7 ELISKSSEESLKSKKEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444333345578899999999999999999999999888888875
No 187
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=32.95 E-value=1.6e+02 Score=28.03 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhcc----CChhhhHHHHHhhccccccchhhHHHHHHHHHHHHHhhhhccc
Q 047506 371 PSMLQAFEISLCWTAASLRKQK----IDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKD 435 (947)
Q Consensus 371 ~silqAF~islcW~aAsl~~~k----~d~~~sl~la~~~l~f~c~~~~~~~vy~~l~~~k~~f~~~~~~ 435 (947)
..||||+ ++.-.+|+ -|.-.-....+..|.++|++ .-+|+|+|.||++|.-...-
T Consensus 13 i~iL~gl-------~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~---~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 13 IVILQGL-------IDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSK---NQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHH-------HHHHHhcCCCCCccHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHHHHHHhhh
Confidence 4566664 33334454 35555566668889998866 78999999999999655443
No 188
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=32.10 E-value=3.4e+02 Score=35.45 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhccccc---------------------
Q 047506 467 RSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRT-EAAVIRYHCNGKM--------------------- 524 (947)
Q Consensus 467 k~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~-e~avIr~~~n~~~--------------------- 524 (947)
|+....+|+-+|.|+.|..+++.++..|.+.-....++|..-++. +.+-.+-.+-.++
T Consensus 942 ks~~Kl~kr~eKeL~~LrKkh~k~~~~l~k~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~e~~~~ 1021 (1189)
T KOG1265|consen 942 KSFVKLLKRHEKELRDLRKKHQKERDTLQKQHQTQVDKLQANNRKREKASLLGLAAKVSKKKGSPSSCSGGSSGGESTPA 1021 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcchhhhccccccccchhhcccccccccCCCCCCcccccCCCCCCchh
Confidence 344556677777888888888888888888888888887665332 4443332221111
Q ss_pred -----cchhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHH-----HhhhhhhhhhhHHHHH
Q 047506 525 -----QMDKLKVLENEYAEKFKELERDRDVRLENLEALHVAS-----MKKLSDKQTSWVEQVK 577 (947)
Q Consensus 525 -----~~dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~-----r~k~~e~ka~w~e~~k 577 (947)
-.++.+=|.+--....-++-+.+..+...+.+.|+++ |+=+.+..+.=...+|
T Consensus 1022 ~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK 1084 (1189)
T KOG1265|consen 1022 ALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALK 1084 (1189)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666666666666666666677777777777654 3333344444444444
No 189
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=30.98 E-value=1e+02 Score=31.08 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchh
Q 047506 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDK 528 (947)
Q Consensus 479 q~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dk 528 (947)
.+.+|++.|++.+.+|++.+++....-..-..+|+++=++-.+-++++||
T Consensus 7 Ei~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdk 56 (121)
T PF03310_consen 7 EISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDK 56 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888888888776654432222455555554444332233333
No 190
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.96 E-value=3.6e+02 Score=34.78 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=9.8
Q ss_pred ccCCCCcccceeecCcccc
Q 047506 231 YSGSSQGSRKRVQYFDDLQ 249 (947)
Q Consensus 231 ~~GrG~R~RK~V~Y~D~l~ 249 (947)
.+|+| .+.|.+-+.
T Consensus 109 ~fg~G-----sls~~qpL~ 122 (1118)
T KOG1029|consen 109 GFGMG-----SLSYSQPLP 122 (1118)
T ss_pred ccCCC-----CcCcCCCCC
Confidence 35666 688888776
No 191
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=30.79 E-value=4.7e+02 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.2
Q ss_pred cCCCCCcchhh
Q 047506 660 NNGGDKLDTIA 670 (947)
Q Consensus 660 ~~~~~~~~~~~ 670 (947)
-+|+--+|+-.
T Consensus 162 ~dG~i~~dnt~ 172 (194)
T COG1390 162 RDGKIRLDNTF 172 (194)
T ss_pred CCCceeecCcH
Confidence 35554555433
No 192
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=30.44 E-value=47 Score=42.38 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=49.9
Q ss_pred HHhhhc-CCCceEEEEecccCcCccCCCccceeEE-----------------ecCCC-CCCchhHHhhhccCCCCcceEE
Q 047506 46 LQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII-----------------FHSDW-SPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 46 Id~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi-----------------fDpdW-NPa~DlQAIdRaHRIGQkK~V~ 106 (947)
++-|.. ..+.+..+++|-.+-..|+....-+||= |.-+| .-+.--|.-|||+|+| +=|
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 455776 5678888999999999999999988873 34456 3444457777777776 578
Q ss_pred EEEEecCCCH
Q 047506 107 VFRLYSFCTV 116 (947)
Q Consensus 107 VyRLVT~nTV 116 (947)
+||||+..-.
T Consensus 697 cYRLYSSAVf 706 (1172)
T KOG0926|consen 697 CYRLYSSAVF 706 (1172)
T ss_pred eeehhhhHHh
Confidence 9999976533
No 193
>PRK13556 azoreductase; Provisional
Probab=30.15 E-value=25 Score=36.45 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=27.1
Q ss_pred CCCccceeEEecCCCC---CCchhHHhhhccCCCC
Q 047506 70 KLSSVHAVIIFHSDWS---PVNDLRALQRITLDPQ 101 (947)
Q Consensus 70 NLtaAdtVIifDpdWN---Pa~DlQAIdRaHRIGQ 101 (947)
.|..||.|||.-|-|| |+.-...|||+.|.|-
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~ 120 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGK 120 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCc
Confidence 4568999999999998 6666788999999864
No 194
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.69 E-value=60 Score=40.06 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=66.4
Q ss_pred EEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEE
Q 047506 31 ERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRL 110 (947)
Q Consensus 31 ~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRL 110 (947)
..+.|+...++|.++-.....+ ..+-+++|-|.-+||.+-.-|.|+.+.-+..-++-.|-.|||+|-.. +-.....
T Consensus 561 ~SYRGGY~A~DRRKIE~~~F~G--~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk--~SLavyv 636 (1034)
T KOG4150|consen 561 TSYRGGYIAEDRRKIESDLFGG--KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK--PSLAVYV 636 (1034)
T ss_pred HhhcCccchhhHHHHHHHhhCC--eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC--CceEEEE
Confidence 3456888888888776554433 35667889999999999999999999999999999999999999754 3333334
Q ss_pred ecCCCHHHHHHH
Q 047506 111 YSFCTVEEKVLI 122 (947)
Q Consensus 111 VT~nTVEEkIlq 122 (947)
+..+-||+.-+.
T Consensus 637 a~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 637 AFLGPVDQYYMS 648 (1034)
T ss_pred EeccchhhHhhc
Confidence 555677776543
No 195
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.07 E-value=1.3e+03 Score=29.94 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=51.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHhcccc---ccchhhhhchHHHH
Q 047506 464 DFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLET---KKRTEAAVIRYHCNGK---MQMDKLKVLENEYA 537 (947)
Q Consensus 464 d~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~---~~~~e~avIr~~~n~~---~~~dklk~l~~e~~ 537 (947)
+-.|+....|.| ...|-|...-|.+|-++|.+++.++..+|.+ -+.+|.+=|++-.+.+ +|.=|+|+=--|-+
T Consensus 445 es~k~~e~lq~k-neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 445 ESLKSQELLQSK-NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 344555666666 6667777788888888888888776666543 3456666676666432 23333444333333
Q ss_pred HHHHHHH-HhHHHHHHhHHH
Q 047506 538 EKFKELE-RDRDVRLENLEA 556 (947)
Q Consensus 538 k~f~el~-~~~d~~lk~l~~ 556 (947)
.++=.|. +|+|.....|.+
T Consensus 524 N~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 524 NQILGITLRQRDAEIERLRE 543 (861)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 3333222 445544444443
No 196
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=28.80 E-value=2.6e+02 Score=31.50 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=59.8
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcc-cccCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHHhhccccccchh
Q 047506 336 MAKLCEVLKLREDVKDTVGKFLEYLMINHR-VDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGE 414 (947)
Q Consensus 336 isKLceIL~LPenVK~mv~~fLEYv~~Nh~-v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~~~l~f~c~~~~ 414 (947)
|..+|.-|.||++|...|.+++....+.-- --+.|.+|.- |.-++||.+++++..-+|....| .+.+..
T Consensus 223 i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAA----AaIYlA~~~~g~~~t~keIa~v~------~Vs~~t 292 (310)
T PRK00423 223 VPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAA----AAIYIASLLLGERRTQREVAEVA------GVTEVT 292 (310)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHH----HHHHHHHHHhCCCCCHHHHHHHc------CCCHHH
Confidence 679999999999999999999998876432 3477777654 56789999999998888764332 566666
Q ss_pred hHHHHHHHHH
Q 047506 415 ADYVYSLLQC 424 (947)
Q Consensus 415 ~~~vy~~l~~ 424 (947)
..-.|..|..
T Consensus 293 I~~~ykel~~ 302 (310)
T PRK00423 293 VRNRYKELAE 302 (310)
T ss_pred HHHHHHHHHH
Confidence 6666766643
No 197
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=4.1e+02 Score=32.31 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=68.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------H-------HHHHHhcccc
Q 047506 462 QKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE-----------A-------AVIRYHCNGK 523 (947)
Q Consensus 462 ~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e-----------~-------avIr~~~n~~ 523 (947)
.|.|-..||+|-+-..||-.+...++ ++..+|+|..+-+-+.|-+-+.+= - -+-++|+|-.
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil-~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ 462 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKIL-EETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCM 462 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 57788899999988888877765554 556678888877777776544321 0 1123444433
Q ss_pred ccchhhhhchHHHHHHHHHHHHhHHH-----HHHhHHHHHHH
Q 047506 524 MQMDKLKVLENEYAEKFKELERDRDV-----RLENLEALHVA 560 (947)
Q Consensus 524 ~~~dklk~l~~e~~k~f~el~~~~d~-----~lk~l~~~~la 560 (947)
.=..++++-++ |++...+|+.|.+. ++++||..|--
T Consensus 463 ei~E~i~~tg~-~~revrdlE~qI~~E~~k~~l~slEkl~~D 503 (521)
T KOG1937|consen 463 EILEMIRETGA-LKREVRDLESQIYVEEQKQYLKSLEKLHQD 503 (521)
T ss_pred HHHHHHHHcch-HHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 34678888777 99999999999988 77888887743
No 198
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=27.93 E-value=71 Score=32.18 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=37.4
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhh
Q 047506 335 EMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASL 388 (947)
Q Consensus 335 EisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl 388 (947)
=|..||+-|.||+.++..+=..+||++.||. +=.-=.|-=||=||=+-+-.
T Consensus 17 Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t---~L~~dRHLDQiilCaiY~i~ 67 (135)
T PF01857_consen 17 RLQDLCERLDLSSDLREKIWTCFEHSLTHHT---ELMKDRHLDQIILCAIYGIC 67 (135)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHSG---GGGTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhhH---HHHhcchHHHHHHHHHHHHH
Confidence 3678999999999999999999999998763 11111355577788766544
No 199
>PF12622 NpwBP: mRNA biogenesis factor
Probab=27.24 E-value=30 Score=29.51 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.8
Q ss_pred eEEecCCCCCC
Q 047506 77 VIIFHSDWSPV 87 (947)
Q Consensus 77 VIifDpdWNPa 87 (947)
=|+||+.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 47888888885
No 200
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.04 E-value=5.1e+02 Score=30.66 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhc
Q 047506 487 QLEEKKDIDKRYEEQKAQL----ETKKRTEAAVIRYHC 520 (947)
Q Consensus 487 q~eek~~~~~~~e~~ka~l----e~~~~~e~avIr~~~ 520 (947)
++++..++++.+.+.+..+ ..+.++++.+.++..
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555554 234555555555555
No 201
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.93 E-value=1.1e+03 Score=30.28 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=30.1
Q ss_pred hhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhhh--hhhhHHHHH
Q 047506 527 DKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDK--QTSWVEQVK 577 (947)
Q Consensus 527 dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e~--ka~w~e~~k 577 (947)
.+++-|..+..+.+++++++...-++..+..--...+++++. +.+++..++
T Consensus 550 ~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~ 602 (771)
T TIGR01069 550 QEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSI 602 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344556667777777778877777777766544444445442 334444433
No 202
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=26.59 E-value=4.4e+02 Score=27.01 Aligned_cols=58 Identities=33% Similarity=0.436 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhh---hhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047506 455 QELFKVAQKDFS---RSIRGIQKKCQKQMAKLR----------HKQLEEKKDIDKRYEEQKAQLETKKRTE 512 (947)
Q Consensus 455 ~e~~~l~~kd~s---k~ik~i~kkc~kq~~kl~----------~~q~eek~~~~~~~e~~ka~le~~~~~e 512 (947)
++++..+++-+. -+|+.|.++..++++++. .+.+++.+++-++|..+-.++...++.|
T Consensus 93 ~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 163 (165)
T PF01765_consen 93 KELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKE 163 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544444332 344555555555555443 5556666666666666666655555444
No 203
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=26.18 E-value=7.8e+02 Score=25.85 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHhhhcCCCCCC
Q 047506 556 ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN 591 (947)
Q Consensus 556 ~~~la~r~k~~e~ka~w~e~~ks~~~~el~~~~~~~ 591 (947)
...|.+|++.-..+.-||+.|..-+...|.+.+...
T Consensus 65 ~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~~~~ 100 (185)
T PRK01194 65 KANIEARSIKREKRREILKDYLDIAYEHLMNITKSK 100 (185)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence 445667777777777899999999999988876533
No 204
>PRK11637 AmiB activator; Provisional
Probab=26.03 E-value=8e+02 Score=28.62 Aligned_cols=9 Identities=44% Similarity=0.660 Sum_probs=4.9
Q ss_pred ccCCCcccc
Q 047506 925 SLTNPLPVL 933 (947)
Q Consensus 925 ~~~~~~~~~ 933 (947)
...||+|.|
T Consensus 418 ~~vnP~~~l 426 (428)
T PRK11637 418 QAVNPQPWL 426 (428)
T ss_pred EEeChHHHh
Confidence 345666654
No 205
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.56 E-value=2.9e+02 Score=34.86 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHH-HHHHhHHHHHHhHHH
Q 047506 478 KQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFK-ELERDRDVRLENLEA 556 (947)
Q Consensus 478 kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~-el~~~~d~~lk~l~~ 556 (947)
.|++||-..-++=-+-+..+....-.+|+..+.+|--|++..- ..-|.+|+- |-+|+. -++.|++..|..||+
T Consensus 788 eq~rklaiLaeqye~si~~m~~~q~lklde~qe~E~q~l~~ql-----~qEle~l~a-yq~k~k~~~e~q~~re~~ele~ 861 (948)
T KOG0577|consen 788 EQTRKLAILAEQYEQSINEMLQSQALKLDEAQEAECQVLREQL-----EQELELLNA-YQSKIKMQAEEQHERELRELEQ 861 (948)
T ss_pred HHHHHHHHHHHHhhhhHHHHhhccceechHHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666666666677888888877777665 456777776 777766 567777777777665
Q ss_pred H
Q 047506 557 L 557 (947)
Q Consensus 557 ~ 557 (947)
.
T Consensus 862 r 862 (948)
T KOG0577|consen 862 R 862 (948)
T ss_pred H
Confidence 4
No 206
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.39 E-value=67 Score=28.90 Aligned_cols=44 Identities=25% Similarity=0.556 Sum_probs=30.5
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHh
Q 047506 337 AKLCEVL-KLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAAS 387 (947)
Q Consensus 337 sKLceIL-~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAs 387 (947)
..++++. .|||+.|.=+.-..||+|+- .++.. .+ .++|.|--|-
T Consensus 2 ~~~yelfqkLPDdLKrEvldY~EfLlek-~~k~~-~~-----~L~lswKGal 46 (65)
T COG5559 2 EAAYELFQKLPDDLKREVLDYIEFLLEK-KAKKK-QK-----PLKLSWKGAL 46 (65)
T ss_pred chHHHHHHHCcHHHHHHHHHHHHHHHHH-HhcCc-CC-----Ccceehhhhh
Confidence 3456655 59999999999999999974 23332 11 3677777664
No 207
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=25.13 E-value=5.4e+02 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q 047506 495 DKRYEEQKAQLETKKRTEAAVIRY 518 (947)
Q Consensus 495 ~~~~e~~ka~le~~~~~e~avIr~ 518 (947)
...++..+.+.+..++...+.+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~s~~~~ 60 (198)
T PF01991_consen 37 EEIIEKAEKEAEQEKEREISKAEL 60 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 208
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.94 E-value=43 Score=40.59 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=46.7
Q ss_pred eEEEEecccCcCccCCCccceeEEecCC------CCCCchh-----------HHhhhccCCCCcceEEEEEEecCCCHHH
Q 047506 56 FVFLLETRACRPSIKLSSVHAVIIFHSD------WSPVNDL-----------RALQRITLDPQLEQIKVFRLYSFCTVEE 118 (947)
Q Consensus 56 fVFLLSTrAGG~GLNLtaAdtVIifDpd------WNPa~Dl-----------QAIdRaHRIGQkK~V~VyRLVT~nTVEE 118 (947)
+-.++||-.+-..|++.+. |+..||. +||.... ||+.|++|-|.+++=..|||+++...+-
T Consensus 314 RkvVvstniaetsltidgi--v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGI--VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ceEEEEecchheeeeeccE--EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 3455677777777666554 4555665 6776543 9999999999999999999999876654
Q ss_pred HH
Q 047506 119 KV 120 (947)
Q Consensus 119 kI 120 (947)
.+
T Consensus 392 em 393 (699)
T KOG0925|consen 392 EM 393 (699)
T ss_pred cC
Confidence 43
No 209
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=24.92 E-value=3.9e+02 Score=30.08 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=61.1
Q ss_pred hhhhhhhhccHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHH
Q 047506 324 LQKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAK 403 (947)
Q Consensus 324 SqKsLHl~LKpEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~ 403 (947)
..|.|-..+ .+|..+|+.|.||++|..-|..++.=+++.+-+--- + ..++-.|...+|..+.+.-.--+|-..++
T Consensus 118 ~er~l~~a~-~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgr--s-~~~i~AAclYiACR~~~~prtl~eI~~~~- 192 (310)
T PRK00423 118 AERNLAFAL-SELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGR--S-IEGVVAAALYAACRRCKVPRTLDEIAEVS- 192 (310)
T ss_pred HhHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC--C-HHHHHHHHHHHHHHHcCCCcCHHHHHHHh-
Confidence 356665544 789999999999999999999998877765443222 2 25666677777777777766666655443
Q ss_pred hhccccccchhhHHHHHHH
Q 047506 404 KHLHFSCKKGEADYVYSLL 422 (947)
Q Consensus 404 ~~l~f~c~~~~~~~vy~~l 422 (947)
.+++.+.-..|..|
T Consensus 193 -----~v~~k~i~~~~~~l 206 (310)
T PRK00423 193 -----RVSRKEIGRCYRFL 206 (310)
T ss_pred -----CCCHHHHHHHHHHH
Confidence 35555555556554
No 210
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.45 E-value=1.6e+02 Score=24.31 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 468 SIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETK 508 (947)
Q Consensus 468 ~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~ 508 (947)
+..+|-+.|-++|+.|.. ++|+.+...+++++.+.+..
T Consensus 27 ~~~~i~~~~~~~W~~l~~---~~k~~y~~~a~~~~~~y~~~ 64 (66)
T cd00084 27 SVGEISKILGEMWKSLSE---EEKKKYEEKAEKDKERYEKE 64 (66)
T ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 567899999999998765 77888888888888776654
No 211
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=24.20 E-value=5.9e+02 Score=35.99 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=65.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-ccccchhhhhchHHHHHHHH
Q 047506 463 KDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCN-GKMQMDKLKVLENEYAEKFK 541 (947)
Q Consensus 463 kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n-~~~~~dklk~l~~e~~k~f~ 541 (947)
.|+..++.+.+|. --++.|..-.=+.++.+|+..+++.++.| +-.|.+.+|++.+ ...|.+=-+-|.. +...|+
T Consensus 1501 ~dl~~~~~e~~k~-v~elek~~r~le~e~~elQ~aLeElE~~l---e~eE~~~lr~~~~~~~~r~e~er~l~e-k~Ee~E 1575 (1930)
T KOG0161|consen 1501 EDLEEQKDEGGKR-VHELEKEKRRLEQEKEELQAALEELEAAL---EAEEDKKLRLQLELQQLRSEIERRLQE-KDEEIE 1575 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 3445555555533 45566667777788888999999888885 4578999998884 7777776666766 778888
Q ss_pred HHHHhHHHHHHhHHH
Q 047506 542 ELERDRDVRLENLEA 556 (947)
Q Consensus 542 el~~~~d~~lk~l~~ 556 (947)
+.++++.+.+..+..
T Consensus 1576 ~~rk~~~~~i~~~q~ 1590 (1930)
T KOG0161|consen 1576 ELRKNLQRQLESLQA 1590 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888887765
No 212
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.73 E-value=9.9e+02 Score=31.77 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=27.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 047506 462 QKDFSRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKR 510 (947)
Q Consensus 462 ~kd~sk~ik~i~kkc~kq~~kl~~~--q~eek~~~~~~~e~~ka~le~~~~ 510 (947)
.+++.+.+..++.+.+...+.+... +.++.....+.|+....+++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555555554 455555555555555555555554
No 213
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=23.62 E-value=4.7e+02 Score=32.08 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHH
Q 047506 541 KELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK 577 (947)
Q Consensus 541 ~el~~~~d~~lk~l~~~~la~r~k~~e~ka~w~e~~k 577 (947)
..++.+.+.+|++|.+.| |+.+++ ||.++-
T Consensus 170 q~ie~kw~seL~~L~~~Q---K~EYRe----wV~~L~ 199 (510)
T PF10154_consen 170 QRIESKWSSELKALKETQ---KQEYRE----WVMRLY 199 (510)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHH
Confidence 356777777877777766 677777 886554
No 214
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=23.47 E-value=7.1e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 471 GIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA 503 (947)
Q Consensus 471 ~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka 503 (947)
-.||.+=.|+.+|+.+|.-+++++.+++.+...
T Consensus 74 ~~Ek~L~~qR~~L~~~h~~e~~~l~~k~~~~~~ 106 (196)
T PF07324_consen 74 LTEKNLLQQRLKLLNEHKIEKQELRQKHKEEQQ 106 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHh
Confidence 445566667788888888888888877766544
No 215
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=23.22 E-value=2.9e+02 Score=27.07 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhcCCCcEEEE-eCCCCHHHHHHHHHhhhcCCCceEEEEecccC-----cCccCCCccceeEEecCC--
Q 047506 12 SLGDILDDFVRQRFGSDSYERV-DGNVLDSKKKAALQNFNNGSGRFVFLLETRAC-----RPSIKLSSVHAVIIFHSD-- 83 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi~y~RL-DGsts~~eRq~aId~FN~ds~~fVFLLSTrAG-----G~GLNLtaAdtVIifDpd-- 83 (947)
.+...|+..+.+.++....+.+ ||+.. +.=..+++.|.....+.++......| -.|+.+..++.|+++|.|
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~-d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~Dd~ 92 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVT-QSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDI 92 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCc-hhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3455566666655444566655 55533 33445677776644444443332222 156777788999999988
Q ss_pred CCCCchhHHhhhc
Q 047506 84 WSPVNDLRALQRI 96 (947)
Q Consensus 84 WNPa~DlQAIdRa 96 (947)
|.|..-.+.+...
T Consensus 93 ~~~~~l~~~~~~~ 105 (201)
T cd04195 93 SLPDRFEKQLDFI 105 (201)
T ss_pred cCcHHHHHHHHHH
Confidence 6666665655554
No 216
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=22.93 E-value=2.2e+02 Score=37.71 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=61.0
Q ss_pred eCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEec-CCCCCCc----------hhHHhhhccCCCCc
Q 047506 34 DGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFH-SDWSPVN----------DLRALQRITLDPQL 102 (947)
Q Consensus 34 DGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifD-pdWNPa~----------DlQAIdRaHRIGQk 102 (947)
+.++..++|+-.=+.|..++ +. .|.+|..-+.|.||.+ ..|||-. +-|++.. -+|-+|||+|.+=-
T Consensus 403 hAGm~r~DR~l~E~~F~~G~-i~-vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEGH-IK-VLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred ccccchhhHHHHHHHHhcCC-ce-EEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 55888899999999998764 33 5567788899999985 4555544 4477766 45999999998766
Q ss_pred ceEEEEEEecCCCHHHHH
Q 047506 103 EQIKVFRLYSFCTVEEKV 120 (947)
Q Consensus 103 K~V~VyRLVT~nTVEEkI 120 (947)
..=..+=+-+.++++-++
T Consensus 480 ~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred CCceEEEEecccHHHHHH
Confidence 666666666666666543
No 217
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.74 E-value=1.5e+03 Score=30.31 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHhhh
Q 047506 415 ADYVYSLLQCLKEVFEL 431 (947)
Q Consensus 415 ~~~vy~~l~~~k~~f~~ 431 (947)
++.+...|.+||..+-.
T Consensus 257 ~e~~~~~l~~Lk~k~~W 273 (1074)
T KOG0250|consen 257 LEDLKENLEQLKAKMAW 273 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666777777776643
No 218
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.72 E-value=4.3e+02 Score=26.90 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=27.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 047506 461 AQKDFSRSIRGIQKKCQKQMAKLRHKQ-------LEEKKDIDKRYEEQKAQLETKKR 510 (947)
Q Consensus 461 ~~kd~sk~ik~i~kkc~kq~~kl~~~q-------~eek~~~~~~~e~~ka~le~~~~ 510 (947)
+..++...|..++++|+.--.+|...+ .+++.++.+.|..-......|+|
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444 35666666666555555555554
No 219
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.68 E-value=4.1e+02 Score=29.40 Aligned_cols=102 Identities=4% Similarity=-0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCC------CCHHHHHHHHHhhhc--CCCceEEEEecccCcCccCC------------Cc
Q 047506 14 GDILDDFVRQRFGSDSYERVDGN------VLDSKKKAALQNFNN--GSGRFVFLLETRACRPSIKL------------SS 73 (947)
Q Consensus 14 LDILEdfL~~rf~Gi~y~RLDGs------ts~~eRq~aId~FN~--ds~~fVFLLSTrAGG~GLNL------------ta 73 (947)
+..+-++|... |+..+.+.|+ ++.++|.++++..-. .....|+. . +|.++ .+
T Consensus 28 l~~li~~l~~~--Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~-g-----v~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 28 YRENIEWLLGY--GLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT-G-----VGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE-e-----cCccHHHHHHHHHHHHHhC
Confidence 44444555555 8999999998 678999999998876 33333343 2 22222 36
Q ss_pred cceeEEecCCCCCCchhHHhhhccCCC--CcceEEEEEEecCCCHHHHHHHHH
Q 047506 74 VHAVIIFHSDWSPVNDLRALQRITLDP--QLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 74 AdtVIifDpdWNPa~DlQAIdRaHRIG--QkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
||.|.++.|.|.+..+.+.+.-...+- -.-+|.+|+ .+..++.-..+...
T Consensus 100 adav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn-~~g~~l~~~~~~~L 151 (296)
T TIGR03249 100 ADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ-RDNAVLNADTLERL 151 (296)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHH
Confidence 799999999987765543333222222 235899998 33334444444433
No 220
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=21.99 E-value=75 Score=40.99 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEEe----cCCCC
Q 047506 12 SLGDILDDFVRQR-FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIF----HSDWS 85 (947)
Q Consensus 12 ~mLDILEdfL~~r-f~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIif----DpdWN 85 (947)
.+.+.|+...--. +..+-...++++++..+.+.+ |+. -++++=.+++|--+-.+|+.-..=+||=. ...||
T Consensus 428 ~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD 504 (924)
T KOG0920|consen 428 QLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYD 504 (924)
T ss_pred HHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeec
Confidence 5555555432211 113678899999999877655 555 44555567777777888877655555422 23355
Q ss_pred CCchh-----------HHhhhccCCCCcceEEEEEEecCCCHHHHHH
Q 047506 86 PVNDL-----------RALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121 (947)
Q Consensus 86 Pa~Dl-----------QAIdRaHRIGQkK~V~VyRLVT~nTVEEkIl 121 (947)
|.... .|..|.+|-|..++=.+|||+++.-.+--+.
T Consensus 505 ~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~ 551 (924)
T KOG0920|consen 505 PERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLML 551 (924)
T ss_pred ccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhccc
Confidence 55443 5677778888888999999999876655443
No 221
>PRK11637 AmiB activator; Provisional
Probab=21.94 E-value=9.7e+02 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 047506 487 QLEEKKDIDKRYEEQKAQLETKKRT 511 (947)
Q Consensus 487 q~eek~~~~~~~e~~ka~le~~~~~ 511 (947)
++.+.+.+....+.++++|+..+.-
T Consensus 192 ~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 192 KQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 222
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=21.91 E-value=3.3e+02 Score=33.31 Aligned_cols=85 Identities=15% Similarity=0.292 Sum_probs=44.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHH
Q 047506 464 DFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKEL 543 (947)
Q Consensus 464 d~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el 543 (947)
-|.+.+.++-...+.++++|.++|++|..+--.+ |.... ++.- |+.. -+...++..++...|...++.|
T Consensus 115 ~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~-------Lg~~l-td~d-IN~l--aaqH~Ee~q~ie~kw~seL~~L 183 (510)
T PF10154_consen 115 NYAKAVSELIQARDQELKKLQERQTEEMEKAMQK-------LGISL-TDRD-INHL--AAQHFEEQQRIESKWSSELKAL 183 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCC-Cchh-HHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666777777777776665433211 11111 1111 1111 1133566667777777777776
Q ss_pred HH-hHHHHHHhHHHHHH
Q 047506 544 ER-DRDVRLENLEALHV 559 (947)
Q Consensus 544 ~~-~~d~~lk~l~~~~l 559 (947)
+. |+..=.+-+..+|.
T Consensus 184 ~~~QK~EYRewV~~L~e 200 (510)
T PF10154_consen 184 KETQKQEYREWVMRLYE 200 (510)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 53 34444444555555
No 223
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.80 E-value=1.8e+02 Score=24.26 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 468 SIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLET 507 (947)
Q Consensus 468 ~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~ 507 (947)
+..+|-+.|.++|+.|.. +||+.+..++++.+.+.+.
T Consensus 27 ~~~~i~~~~~~~W~~ls~---~eK~~y~~~a~~~~~~y~~ 63 (66)
T cd01390 27 SVTEVTKILGEKWKELSE---EEKKKYEEKAEKDKERYEK 63 (66)
T ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHH
Confidence 568899999999998764 6777777777777665543
No 224
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.67 E-value=4.3e+02 Score=27.97 Aligned_cols=55 Identities=16% Similarity=0.369 Sum_probs=32.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 047506 462 QKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIR 517 (947)
Q Consensus 462 ~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr 517 (947)
+.++...|+.++++ ..++++=....+.+...+.++.++.++.-+++|+.|...++
T Consensus 122 ~~~l~~~i~~L~~e-~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 122 KQELEEEIEELEEE-KEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667666655 44555555555555666666666666666666666555443
No 225
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.63 E-value=1.4e+03 Score=27.70 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHHHh
Q 047506 467 RSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERD 546 (947)
Q Consensus 467 k~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~~~ 546 (947)
+.++.|++. -.+.++.+..++.+...|++.+.+.+.++.. ++.++|++-. =.++++.=-..
T Consensus 38 ~~l~q~q~e-i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~---~~~ql~~s~~---------------~l~~~~~~I~~ 98 (420)
T COG4942 38 KQLKQIQKE-IAALEKKIREQQDQRAKLEKQLKSLETEIAS---LEAQLIETAD---------------DLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh---------------HHHHHHhhHHH
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhcCCCC
Q 047506 547 RDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPS 589 (947)
Q Consensus 547 ~d~~lk~l~~~~la~r~k~~e~ka~w~e~~ks~~~~el~~~~~ 589 (947)
.+-+|+.|+..+-+-|..|.+ +=.|++--=.|.||
T Consensus 99 ~~~~l~~l~~q~r~qr~~La~--------~L~A~~r~g~~p~~ 133 (420)
T COG4942 99 LNARLNALEVQEREQRRRLAE--------QLAALQRSGRNPPP 133 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccCCCCc
No 226
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.43 E-value=5.1e+02 Score=27.51 Aligned_cols=59 Identities=25% Similarity=0.435 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhhh---hhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047506 454 RQELFKVAQKDFS---RSIRGIQKKCQKQMAKL----------RHKQLEEKKDIDKRYEEQKAQLETKKRTE 512 (947)
Q Consensus 454 ~~e~~~l~~kd~s---k~ik~i~kkc~kq~~kl----------~~~q~eek~~~~~~~e~~ka~le~~~~~e 512 (947)
+++++..+++-.. -+|++|-+..-++++|+ ..+.+++.|++-++|-++-.++=..++.|
T Consensus 110 R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~~~Keke 181 (185)
T PRK00083 110 RKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKE 181 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666655433 35667766666666655 36677777777777777766665555554
No 227
>PRK14011 prefoldin subunit alpha; Provisional
Probab=21.42 E-value=3.4e+02 Score=27.83 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=34.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 459 KVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETK 508 (947)
Q Consensus 459 ~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~ 508 (947)
+=|.+.|.+.|+.+++. .+++.+-+++-.++..++....+..-.+++++
T Consensus 87 ~eA~~~~~~ri~~l~~~-~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~ 135 (144)
T PRK14011 87 SEVIEDFKKSVEELDKT-KKEGNKKIEELNKEITKLRKELEKRAQAIEQR 135 (144)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888865 66677777777777777776666555555444
No 228
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.10 E-value=6.2e+02 Score=26.06 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Q 047506 475 KCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHC 520 (947)
Q Consensus 475 kc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr~~~ 520 (947)
.-++++.+....-++-+.+-++..+.++.+.....+-|++=|.--.
T Consensus 78 e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a 123 (167)
T PRK08475 78 DALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSF 123 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555544444
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.88 E-value=8.5e+02 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047506 488 LEEKKDIDKRYEEQKAQLET 507 (947)
Q Consensus 488 ~eek~~~~~~~e~~ka~le~ 507 (947)
+.++.++++.+++.+++++.
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455544444443
No 230
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=20.57 E-value=3.1e+02 Score=30.87 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhhhhhhhH
Q 047506 496 KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWV 573 (947)
Q Consensus 496 ~~~e~~ka~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e~ka~w~ 573 (947)
..|+++.+.|+...+. ..-.....+.++++- ....++.|..++..+. +-....++.|++.+.+|.
T Consensus 27 ~~Y~~ei~~L~~~i~~-----~~~~~~~~~~k~~~~----l~~~i~~L~~E~~~h~----~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 27 ELYDEEIERLEKEISQ-----MSRATISKKKKEKER----LKNLIDKLPEELKKHQ----EHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred HHHHHHHHHHHHHHHH-----hccccchhhHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhh
Confidence 3566666666555444 111112222333333 3344444544444433 344568889999999999
No 231
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=20.24 E-value=9.6e+02 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHhhhHHHHHHHhccccccchhhhhchHHHHHHHHHHHHhHHH
Q 047506 504 QLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549 (947)
Q Consensus 504 ~le~~~~~e~avIr~~~n~~~~~dklk~l~~e~~k~f~el~~~~d~ 549 (947)
.-+...+.+|+.+-.- ...|-..+|++|.++.++|+-||-.
T Consensus 100 ~~~~~~~~~we~f~~e-----~~~~~~~vdee~~~~~~~l~e~Y~~ 140 (145)
T PF14942_consen 100 ANREQRKQEWEEFMKE-----QQQKKQRVDEEFREKEERLKEQYSE 140 (145)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566554332 2456677899999999999887753
No 232
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.00 E-value=1.3e+02 Score=32.55 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 047506 489 EEKKDIDKRYEEQKAQLETKKRTEAA 514 (947)
Q Consensus 489 eek~~~~~~~e~~ka~le~~~~~e~a 514 (947)
++.++|+++.++.|.+|++|+.+|.|
T Consensus 125 ~~~~~L~~el~~~k~~L~~rK~ierA 150 (194)
T COG3707 125 EERRALRRELAKLKDRLEERKVIERA 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888888888888877
Done!