Query 047506
Match_columns 947
No_of_seqs 270 out of 1494
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 2.9E-29 9.9E-34 261.1 13.2 130 1-135 116-245 (271)
2 3mwy_W Chromo domain-containin 100.0 2E-29 6.7E-34 295.1 12.6 131 1-137 576-707 (800)
3 1z3i_X Similar to RAD54-like; 99.9 2.5E-27 8.5E-32 271.6 12.0 130 1-136 420-550 (644)
4 1z63_A Helicase of the SNF2/RA 99.9 1.1E-24 3.8E-29 237.8 12.8 130 1-135 345-474 (500)
5 3hgt_A HDA1 complex subunit 3; 99.9 7.9E-24 2.7E-28 228.5 10.2 113 1-126 129-249 (328)
6 1wp9_A ATP-dependent RNA helic 99.8 1.4E-19 4.7E-24 189.2 5.7 119 1-130 365-491 (494)
7 3dmq_A RNA polymerase-associat 99.7 4.7E-17 1.6E-21 195.2 14.6 128 1-133 507-634 (968)
8 2fwr_A DNA repair protein RAD2 99.6 5.9E-16 2E-20 168.0 4.3 117 1-130 353-470 (472)
9 2hjv_A ATP-dependent RNA helic 99.5 1.6E-13 5.4E-18 130.7 11.0 104 1-114 39-142 (163)
10 4a2p_A RIG-I, retinoic acid in 99.5 2.2E-14 7.4E-19 156.2 4.8 120 1-130 394-523 (556)
11 3tbk_A RIG-I helicase domain; 99.5 4.3E-14 1.5E-18 153.1 6.6 113 1-122 393-515 (555)
12 2jgn_A DBX, DDX3, ATP-dependen 99.4 1.5E-13 5.2E-18 134.5 9.7 118 1-126 50-167 (185)
13 4a2q_A RIG-I, retinoic acid in 99.4 5.8E-14 2E-18 164.1 5.4 120 1-130 635-764 (797)
14 1t5i_A C_terminal domain of A 99.4 3.1E-13 1.1E-17 130.5 9.4 100 1-108 35-134 (172)
15 2p6n_A ATP-dependent RNA helic 99.4 4.5E-13 1.5E-17 132.3 10.0 104 1-114 58-161 (191)
16 1fuk_A Eukaryotic initiation f 99.4 7.2E-13 2.5E-17 126.1 10.4 107 1-117 34-140 (165)
17 4a2w_A RIG-I, retinoic acid in 99.4 1.5E-13 5.3E-18 164.3 6.3 125 1-134 635-769 (936)
18 2yjt_D ATP-dependent RNA helic 99.0 1.2E-13 4E-18 132.4 0.0 100 1-108 34-133 (170)
19 2rb4_A ATP-dependent RNA helic 99.3 5.9E-12 2E-16 121.0 9.6 106 1-116 38-149 (175)
20 2oca_A DAR protein, ATP-depend 99.2 3.5E-12 1.2E-16 139.8 5.0 109 12-123 358-467 (510)
21 1xti_A Probable ATP-dependent 99.2 1.9E-11 6.7E-16 127.3 10.3 115 1-126 254-368 (391)
22 1hv8_A Putative ATP-dependent 99.2 1.9E-11 6.6E-16 125.2 9.5 106 1-116 242-347 (367)
23 3eaq_A Heat resistant RNA depe 99.2 3.8E-11 1.3E-15 119.7 11.2 104 1-114 35-138 (212)
24 2z0m_A 337AA long hypothetical 99.2 8.4E-12 2.9E-16 126.8 5.6 111 1-124 224-334 (337)
25 1s2m_A Putative ATP-dependent 99.2 6.7E-11 2.3E-15 124.2 10.7 105 1-115 262-366 (400)
26 2j0s_A ATP-dependent RNA helic 99.2 3.8E-11 1.3E-15 126.8 8.5 105 1-115 280-384 (410)
27 3pey_A ATP-dependent RNA helic 99.1 1.1E-10 3.7E-15 120.9 9.5 100 1-108 247-352 (395)
28 2ykg_A Probable ATP-dependent 99.1 5.1E-11 1.8E-15 135.3 5.0 109 1-120 402-522 (696)
29 2i4i_A ATP-dependent RNA helic 99.1 2.8E-10 9.5E-15 119.9 10.1 114 1-124 280-395 (417)
30 4gl2_A Interferon-induced heli 99.1 1E-10 3.4E-15 133.0 6.2 111 1-121 404-526 (699)
31 3i32_A Heat resistant RNA depe 99.0 1.3E-09 4.3E-14 115.8 13.7 105 1-115 32-136 (300)
32 3eiq_A Eukaryotic initiation f 99.0 1.4E-10 4.8E-15 121.8 5.8 104 1-114 284-387 (414)
33 2db3_A ATP-dependent RNA helic 99.0 5.2E-10 1.8E-14 121.8 10.5 100 1-108 304-403 (434)
34 1fuu_A Yeast initiation factor 99.0 4.2E-11 1.4E-15 124.6 0.0 104 1-114 263-366 (394)
35 3h1t_A Type I site-specific re 99.0 4.4E-10 1.5E-14 126.3 8.1 106 1-111 443-558 (590)
36 3fht_A ATP-dependent RNA helic 99.0 1.4E-09 4.8E-14 113.8 10.6 114 1-125 270-389 (412)
37 3i5x_A ATP-dependent RNA helic 98.9 7.8E-09 2.7E-13 114.8 11.7 106 1-114 343-449 (563)
38 3sqw_A ATP-dependent RNA helic 98.8 8.8E-09 3E-13 116.0 11.7 114 1-124 292-406 (579)
39 1oyw_A RECQ helicase, ATP-depe 98.8 1.3E-08 4.5E-13 114.5 10.6 100 1-108 240-339 (523)
40 2v1x_A ATP-dependent DNA helic 98.7 4.6E-08 1.6E-12 112.3 10.4 100 1-108 271-370 (591)
41 3oiy_A Reverse gyrase helicase 98.6 1.2E-07 4.2E-12 101.1 9.3 98 1-111 256-362 (414)
42 3fmp_B ATP-dependent RNA helic 98.5 1.1E-08 3.6E-13 111.8 0.0 99 1-107 337-441 (479)
43 2eyq_A TRCF, transcription-rep 98.5 1.4E-07 4.7E-12 116.1 8.8 106 1-114 816-922 (1151)
44 3rc3_A ATP-dependent RNA helic 98.4 3E-07 1E-11 107.7 8.8 106 1-113 324-444 (677)
45 3fho_A ATP-dependent RNA helic 98.4 2.9E-08 9.9E-13 110.6 -0.1 100 1-108 361-466 (508)
46 2xgj_A ATP-dependent RNA helic 98.3 7.6E-07 2.6E-11 108.3 9.7 93 30-124 409-509 (1010)
47 2va8_A SSO2462, SKI2-type heli 98.2 3E-06 1E-10 97.7 11.0 85 29-115 314-409 (715)
48 2p6r_A Afuhel308 helicase; pro 98.2 2.2E-06 7.6E-11 98.9 8.9 87 29-117 298-391 (702)
49 2zj8_A DNA helicase, putative 98.2 3.6E-06 1.2E-10 97.5 10.1 88 29-118 296-391 (720)
50 3l9o_A ATP-dependent RNA helic 98.1 4E-06 1.4E-10 103.0 8.8 96 30-127 507-610 (1108)
51 1c4o_A DNA nucleotide excision 98.1 5.1E-06 1.7E-10 96.7 9.2 105 1-116 443-552 (664)
52 2d7d_A Uvrabc system protein B 98.0 1.3E-05 4.5E-10 93.2 10.9 105 1-116 449-558 (661)
53 1gm5_A RECG; helicase, replica 97.9 2.1E-06 7.1E-11 102.2 2.1 93 14-108 599-693 (780)
54 2jlq_A Serine protease subunit 97.8 3.3E-05 1.1E-09 85.1 7.7 93 1-106 192-305 (451)
55 1yks_A Genome polyprotein [con 97.7 1.7E-05 5.9E-10 87.4 5.2 92 1-105 181-292 (440)
56 4a4z_A Antiviral helicase SKI2 97.7 3.4E-05 1.2E-09 93.9 7.7 93 29-124 401-502 (997)
57 2z83_A Helicase/nucleoside tri 97.7 1.8E-05 6.2E-10 87.6 4.2 100 1-114 194-313 (459)
58 2wv9_A Flavivirin protease NS2 97.6 6.3E-05 2.2E-09 88.1 7.1 93 1-106 414-527 (673)
59 2v6i_A RNA helicase; membrane, 97.6 8.3E-05 2.8E-09 81.7 7.2 96 1-109 175-288 (431)
60 2xau_A PRE-mRNA-splicing facto 97.5 2.9E-05 1E-09 92.0 3.0 109 1-116 307-445 (773)
61 1tf5_A Preprotein translocase 97.4 0.00014 4.7E-09 87.5 7.3 95 1-105 436-538 (844)
62 2whx_A Serine protease/ntpase/ 97.4 0.00021 7.3E-09 82.8 7.4 98 1-112 359-476 (618)
63 3jux_A Protein translocase sub 97.3 0.00034 1.2E-08 83.5 8.7 95 1-105 478-580 (822)
64 1gku_B Reverse gyrase, TOP-RG; 97.3 0.00014 4.9E-09 88.8 5.1 70 1-83 279-352 (1054)
65 2fsf_A Preprotein translocase 97.0 0.00074 2.5E-08 81.4 7.4 95 1-105 445-576 (853)
66 4ddu_A Reverse gyrase; topoiso 96.9 0.00055 1.9E-08 84.3 5.2 71 1-84 313-388 (1104)
67 1nkt_A Preprotein translocase 96.9 0.0013 4.3E-08 79.8 8.1 95 1-105 464-610 (922)
68 3o8b_A HCV NS3 protease/helica 96.9 0.00072 2.5E-08 79.6 5.4 97 1-117 400-517 (666)
69 2w00_A HSDR, R.ECOR124I; ATP-b 94.5 0.1 3.5E-06 64.3 10.5 77 41-123 637-715 (1038)
70 4f92_B U5 small nuclear ribonu 94.4 0.076 2.6E-06 68.5 9.1 88 29-118 380-477 (1724)
71 4f92_B U5 small nuclear ribonu 92.7 0.16 5.6E-06 65.6 8.0 83 29-113 1215-1307(1724)
72 2vl7_A XPD; helicase, unknown 81.7 1.3 4.4E-05 50.2 5.3 74 1-87 388-466 (540)
73 1m3w_A H10H24; four-helix bund 76.5 1.8 6.2E-05 32.1 2.9 22 532-553 9-30 (32)
74 3oja_B Anopheles plasmodium-re 70.9 9.3 0.00032 43.1 8.4 25 405-429 388-412 (597)
75 3vem_A Helicase protein MOM1; 70.7 6 0.00021 37.7 5.6 35 533-567 63-97 (115)
76 4bbr_M Transcription initiatio 54.1 36 0.0012 37.0 8.8 89 324-422 122-210 (345)
77 3uux_B Mitochondrial division 50.0 58 0.002 34.6 9.1 135 368-507 71-212 (242)
78 1ais_B TFB TFIIB, protein (tra 48.3 70 0.0024 31.2 9.1 87 325-421 6-92 (200)
79 1ais_B TFB TFIIB, protein (tra 42.9 1.2E+02 0.004 29.6 9.7 77 336-422 112-189 (200)
80 1deq_A Fibrinogen (alpha chain 42.5 71 0.0024 35.9 8.8 33 479-514 53-85 (390)
81 1c9b_A General transcription f 41.4 1.1E+02 0.0036 30.2 9.2 83 334-425 104-186 (207)
82 4a15_A XPD helicase, ATP-depen 38.5 32 0.0011 40.0 5.6 48 35-84 477-527 (620)
83 4efa_E V-type proton ATPase su 38.2 3.3E+02 0.011 27.6 14.2 52 533-587 59-110 (233)
84 3oja_B Anopheles plasmodium-re 36.4 1.5E+02 0.0052 33.2 10.6 18 560-577 558-575 (597)
85 3ghg_A Fibrinogen alpha chain; 32.3 2.5E+02 0.0084 33.0 11.3 21 536-556 115-135 (562)
86 3oja_A Leucine-rich immune mol 31.4 1.2E+02 0.0041 33.5 8.6 14 493-506 414-427 (487)
87 1u6t_A SH3 domain-binding glut 29.4 1.1E+02 0.0037 29.0 6.7 47 2-50 4-53 (121)
88 3vem_A Helicase protein MOM1; 28.2 2.1E+02 0.0071 27.4 8.2 31 480-510 48-78 (115)
89 1l8y_A Upstream binding factor 27.5 87 0.003 28.5 5.4 56 455-517 17-72 (91)
90 1wxl_A Single-strand recogniti 27.4 43 0.0015 28.0 3.2 35 468-507 30-64 (73)
91 1deq_A Fibrinogen (alpha chain 26.0 2.5E+02 0.0085 31.7 9.7 21 461-481 114-134 (390)
92 3lay_A Zinc resistance-associa 25.6 2.3E+02 0.0079 28.4 8.6 29 539-567 114-142 (175)
93 2efl_A Formin-binding protein 25.0 5.5E+02 0.019 26.0 15.7 26 484-509 132-157 (305)
94 1jad_A PLC-beta, phospholipase 24.9 6E+02 0.021 27.1 12.0 11 538-548 134-144 (251)
95 3ghg_A Fibrinogen alpha chain; 21.5 1.9E+02 0.0065 33.9 7.9 45 464-509 75-119 (562)
96 1c9b_A General transcription f 20.9 2.8E+02 0.0096 27.1 8.2 64 333-399 9-72 (207)
97 3mwd_B ATP-citrate synthase; A 20.8 1.9E+02 0.0064 31.6 7.4 85 2-110 173-259 (334)
98 2ipc_A Preprotein translocase 20.3 1.9E+02 0.0064 36.2 8.0 31 76-106 662-692 (997)
99 3tbi_B DNA-directed RNA polyme 20.2 5.3E+02 0.018 27.1 10.3 42 526-567 168-209 (228)
100 3fs3_A Nucleosome assembly pro 20.1 2E+02 0.0067 32.1 7.4 42 467-509 53-95 (359)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.96 E-value=2.9e-29 Score=261.13 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=111.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||||. .++++|+++|..++ |+.+.+++|+++..+|++++++|++++.+.|||++|++||.||||+.|++||+|
T Consensus 116 lIFs~~~----~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 116 AIFTQFV----DMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 190 (271)
T ss_dssp EEEESCH----HHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEEC
T ss_pred EEEeccH----HHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEE
Confidence 6999999 99999999998743 799999999999999999999999987788999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|++|||..+.||+||+||+||+++|+||+|++.+||||+|++++..|..+...++
T Consensus 191 d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~ 245 (271)
T 1z5z_A 191 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 245 (271)
T ss_dssp SCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGG
T ss_pred CCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988886
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-29 Score=295.09 Aligned_cols=131 Identities=34% Similarity=0.520 Sum_probs=123.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .++++|+++|..+ |+.|.+|||+++..+|++++++|+. +++.+|||+||+|||.||||++||+||+
T Consensus 576 LIFsq~~----~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 576 LIFSQMV----RMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI 649 (800)
T ss_dssp EEEESCH----HHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE
T ss_pred EEEechH----HHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE
Confidence 6999999 9999999999988 9999999999999999999999998 6778899999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhcc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNM 137 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vidi 137 (947)
||++|||+.+.||+||+||+||+++|+||||++.+||||+|++++.+|+.+++.++..
T Consensus 650 ~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~ 707 (800)
T 3mwy_W 650 FDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISL 707 (800)
T ss_dssp SSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-----
T ss_pred ecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999998743
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=2.5e-27 Score=271.60 Aligned_cols=130 Identities=28% Similarity=0.474 Sum_probs=124.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcC-CCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~d-s~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
||||||+ .++++|+.+|..+ |+.|.+|||+++..+|++++++|+++ ...++||++|+|||.||||+.|++||+
T Consensus 420 lIFs~~~----~~~~~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 420 VLVSNYT----QTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp EEEESCH----HHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred EEEEccH----HHHHHHHHHHHHC--CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 6999999 9999999999988 99999999999999999999999994 446899999999999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhhc
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQN 136 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vid 136 (947)
||++|||+.+.||+||+||+||+++|+||||++.+||||+|++++..|..+...|++
T Consensus 494 ~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~ 550 (644)
T 1z3i_X 494 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD 550 (644)
T ss_dssp CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred ECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999888863
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=1.1e-24 Score=237.78 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=120.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+|+. .++++|.++|...+ |+.+.+++|+++..+|++++++|++++...++|++|++||.||||+.|++||+|
T Consensus 345 lvF~~~~----~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 345 AIFTQFV----DMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp EEECSCH----HHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred EEEEehH----HHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 6999999 99999999998743 789999999999999999999999987778999999999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQ 135 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~Vi 135 (947)
|++|||....||+||+||+||+++|+||+|++.+|+||+|++++..|..+...++
T Consensus 420 d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~ 474 (500)
T 1z63_A 420 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 474 (500)
T ss_dssp SCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGG
T ss_pred CCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888886
No 5
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.89 E-value=7.9e-24 Score=228.53 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=90.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC-----CCccc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK-----LSSVH 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN-----LtaAd 75 (947)
|||||++ .+||+||+||..+ |+.|.|+||+.... +++. .+..+++||+ ++|||.|+| |++||
T Consensus 129 LIfsq~t----~~LDilE~~l~~~--~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-tsag~~gin~~~~nl~~aD 195 (328)
T 3hgt_A 129 AIVCRPG----RTMDLLEALLLGN--KVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-SSEGINFTKYPIKSKARFD 195 (328)
T ss_dssp EEEECST----HHHHHHHHHHTTS--SCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCS
T ss_pred EEEECCh----hHHHHHHHHHhcC--CCceEeCCCCchhh-hhhc-----ccCCceEEEE-ECCCCCCcCcccccCCCCC
Confidence 6999999 9999999999977 99999999996543 3221 1456889988 568888886 89999
Q ss_pred eeEEecCCCCCCch-hHHhhhccCC--CCcceEEEEEEecCCCHHHHHHHHHHh
Q 047506 76 AVIIFHSDWSPVND-LRALQRITLD--PQLEQIKVFRLYSFCTVEEKVLILAKQ 126 (947)
Q Consensus 76 tVIifDpdWNPa~D-lQAIdRaHRI--GQkK~V~VyRLVT~nTVEEkIlq~ak~ 126 (947)
+||+||++|||+.| .||++|+||+ ||+|+|.||||++.+||||.+++..+.
T Consensus 196 ~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 196 MLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK 249 (328)
T ss_dssp EEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC
Confidence 99999999999999 9999999999 789999999999999999999998653
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.77 E-value=1.4e-19 Score=189.17 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=105.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeC--------CCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDG--------NVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDG--------sts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt 72 (947)
|||+++. .+++.|.++|... |+.+.+++| +++..+|+.++++|+.+. . .+|++|.++|.||||+
T Consensus 365 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~-~vLv~T~~~~~Gldl~ 436 (494)
T 1wp9_A 365 IVFTNYR----ETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGE-F-NVLVATSVGEEGLDVP 436 (494)
T ss_dssp EEECSCH----HHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTS-C-SEEEECGGGGGGGGST
T ss_pred EEEEccH----HHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCC-c-eEEEECCccccCCCch
Confidence 6999999 9999999999988 999999999 999999999999999865 3 3577889999999999
Q ss_pred ccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCCh
Q 047506 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTP 130 (947)
Q Consensus 73 aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~L 130 (947)
.|++||+||++|||....|++||+||.|| +.+|+|++.+|+||+|+.++.+|..+
T Consensus 437 ~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~ 491 (494)
T 1wp9_A 437 EVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKI 491 (494)
T ss_dssp TCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-----
T ss_pred hCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999888754
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.70 E-value=4.7e-17 Score=195.24 Aligned_cols=128 Identities=12% Similarity=0.055 Sum_probs=117.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
||||++. ..++.|..+|..++ |+++..++|+++..+|..+++.|+++.+...+|++|.++|.|||++.|++||+|
T Consensus 507 iVF~~~~----~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~ 581 (968)
T 3dmq_A 507 LVICAKA----ATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMF 581 (968)
T ss_dssp CEECSST----HHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECS
T ss_pred EEEeCcH----HHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEe
Confidence 6999999 99999999999543 899999999999999999999999976445666788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGY 133 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~ 133 (947)
|++|||....|++||+||+||++.|.||++++.+|+|++|++.+..|..+...
T Consensus 582 d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 582 DLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp SCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred cCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceec
Confidence 99999999999999999999999999999999999999999999988875443
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.57 E-value=5.9e-16 Score=167.98 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=92.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ..++.|.++|. +..++|+++..+|..++++|+++. +. +|++|.+++.|+|++.+++||+|
T Consensus 353 lvF~~~~----~~~~~l~~~l~-------~~~~~g~~~~~~R~~~~~~F~~g~-~~-vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 353 IIFTRHN----ELVYRISKVFL-------IPAITHRTSREEREEILEGFRTGR-FR-AIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp CCBCSCH----HHHHHHHHHTT-------CCBCCSSSCSHHHHTHHHHHHHSS-CS-BCBCSSCCCSSSCSCCBSEEEEE
T ss_pred EEEECCH----HHHHHHHHHhC-------cceeeCCCCHHHHHHHHHHHhCCC-CC-EEEEcCchhcCcccccCcEEEEE
Confidence 6888888 88888887763 346899999999999999999843 33 46788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCc-ceEEEEEEecCCCHHHHHHHHHHhCCCh
Q 047506 81 HSDWSPVNDLRALQRITLDPQL-EQIKVFRLYSFCTVEEKVLILAKQDKTP 130 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQk-K~V~VyRLVT~nTVEEkIlq~ak~Kl~L 130 (947)
|++|||....|++||++|.||. +.|.||+|++.+|+||+|.++.+.|..+
T Consensus 420 ~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 420 SGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred CCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 9999999999999999999999 8999999999999999999988877654
No 9
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.47 E-value=1.6e-13 Score=130.73 Aligned_cols=104 Identities=11% Similarity=0.174 Sum_probs=92.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+++.|+|+..+++||+|
T Consensus 39 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gld~~~~~~Vi~~ 110 (163)
T 2hjv_A 39 IIFCRTK----EHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGE-YR-YLVATDVAARGIDIENISLVINY 110 (163)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGGTTTCCCSCCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEECChhhcCCchhcCCEEEEe
Confidence 6898888 9999999999987 999999999999999999999999753 33 56688999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++|+|....|++||++|.||...+. .|++..
T Consensus 111 ~~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~ 142 (163)
T 2hjv_A 111 DLPLEKESYVHRTGRTGRAGNKGKAI--SFVTAF 142 (163)
T ss_dssp SCCSSHHHHHHHTTTSSCTTCCEEEE--EEECGG
T ss_pred CCCCCHHHHHHhccccCcCCCCceEE--EEecHH
Confidence 99999999999999999999976654 455544
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.46 E-value=2.2e-14 Score=156.23 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=60.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh----------cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR----------FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK 70 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r----------f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN 70 (947)
|||+++. .+++.|.++|... +.|..+..++|+++..+|..++++|+.+..+. +|++|.++|.|||
T Consensus 394 lVF~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~-vLvaT~~~~~GiD 468 (556)
T 4a2p_A 394 LLFAKTR----ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGID 468 (556)
T ss_dssp EEEESSH----HHHHHHHHHHTTCSGGGSCCEEC------------------------------CC-EEEEEC-------
T ss_pred EEEEccH----HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE-EEEEcCchhcCCC
Confidence 6999999 9999999999753 12566777788899999999999999844444 5678899999999
Q ss_pred CCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCCh
Q 047506 71 LSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTP 130 (947)
Q Consensus 71 LtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~L 130 (947)
++.+++||+||++|||....|++|| ||.+++.+|.|++.+|++++ +.....|..+
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~ 523 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 523 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHH
Confidence 9999999999999999999998777 67789999999999999999 4455555443
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.45 E-value=4.3e-14 Score=153.14 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=76.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh----------cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR----------FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK 70 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r----------f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN 70 (947)
|||+++. .+++.|.++|... +.|..+..++|+++..+|..++++|+++..+.| |++|.++|.|||
T Consensus 393 lVF~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v-LvaT~~~~~GlD 467 (555)
T 3tbk_A 393 ILFVKTR----ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI-LIATSVADEGID 467 (555)
T ss_dssp EEECSSH----HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSE-EEECCCTTCCEE
T ss_pred EEEeCcH----HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeE-EEEcchhhcCCc
Confidence 6999999 9999999999864 125567777889999999999999998445555 568899999999
Q ss_pred CCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHH
Q 047506 71 LSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122 (947)
Q Consensus 71 LtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq 122 (947)
++.+++||+||++|||....|++|| ||.+.+.+|.|++.++++++...
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999998888 77799999999999999988443
No 12
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=134.54 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=83.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||++.. ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+++.|+|++.+++||+|
T Consensus 50 lVF~~~~----~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 50 LVFVETK----KGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGK-SP-ILVATAVAARGLDISNVKHVINF 121 (185)
T ss_dssp EEEESCH----HHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTS-SS-EEEEEC------CCCSBSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEEcChhhcCCCcccCCEEEEe
Confidence 6899998 9999999999987 999999999999999999999999754 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~ 126 (947)
|++|+|....|++||++|.||...+.+|---....+-.++......
T Consensus 122 d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 122 DLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp SCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999987655444333333444455554433
No 13
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.42 E-value=5.8e-14 Score=164.12 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=66.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh----------cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR----------FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK 70 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r----------f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN 70 (947)
|||+++. .+++.|.++|... |.|..+..++|+++..+|..++++|+.+..+. +|++|.++|.|||
T Consensus 635 LIF~~~~----~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~-vLVaT~~~~~GID 709 (797)
T 4a2q_A 635 LLFAKTR----ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGID 709 (797)
T ss_dssp EEEESSH----HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS-EEEEECC------
T ss_pred EEEECcH----HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce-EEEEcCchhcCCC
Confidence 6999999 9999999999762 23677888899999999999999999833444 6678899999999
Q ss_pred CCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCCh
Q 047506 71 LSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTP 130 (947)
Q Consensus 71 LtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~L 130 (947)
++.|++||+||++|||....|++|| ||.+++.+|+|++.+|++|+ +.....|..+
T Consensus 710 lp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~ 764 (797)
T 4a2q_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 764 (797)
T ss_dssp -CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHH
Confidence 9999999999999999999998877 66789999999999999999 4555555433
No 14
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.42 E-value=3.1e-13 Score=130.51 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=90.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+.+. ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+++.|||+..+++||+|
T Consensus 35 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldi~~~~~Vi~~ 106 (172)
T 1t5i_A 35 VIFVKSV----QRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVATNLFGRGMDIERVNIAFNY 106 (172)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEESSCCSTTCCGGGCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCC-Cc-EEEECCchhcCcchhhCCEEEEE
Confidence 6899988 9999999999987 999999999999999999999999753 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++|||....|++||++|.||...+.+|
T Consensus 107 d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 107 DMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp SCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred CCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999999999999997655443
No 15
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=132.28 Aligned_cols=104 Identities=11% Similarity=0.150 Sum_probs=89.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+++.|||+..+++||+|
T Consensus 58 lVF~~~~----~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~-vLvaT~~~~~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 58 LIFAEKK----ADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGK-KD-VLVATDVASKGLDFPAIQHVINY 129 (191)
T ss_dssp EEECSCH----HHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTS-CS-EEEECHHHHTTCCCCCCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCC-CE-EEEEcCchhcCCCcccCCEEEEe
Confidence 6899999 9999999999988 999999999999999999999999753 33 56778999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++|+|....|++||++|.||+..+ +.|++..
T Consensus 130 d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 130 DMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp SCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 9999999999999999999997754 4456654
No 16
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.40 E-value=7.2e-13 Score=126.13 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=89.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ...+.+..+|... |+.+..++|+++..+|..+++.|+.+. .. +|++|.+++.|+|+..+++||+|
T Consensus 34 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 34 VIFCNTR----RKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILISTDLLARGIDVQQVSLVINY 105 (165)
T ss_dssp EEEESSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEEGGGTTTCCCCSCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCC-CE-EEEEcChhhcCCCcccCCEEEEe
Confidence 6899988 9999999999987 999999999999999999999999753 33 55677999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
|++|++....|++||++|.||... +|.|++....+
T Consensus 106 ~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 106 DLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp SCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred CCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 999999999999999999998765 45667766543
No 17
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.39 E-value=1.5e-13 Score=164.32 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=70.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh----------cCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccC
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR----------FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIK 70 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r----------f~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLN 70 (947)
|||+++. .+++.|.++|... +.|..+..++|+++..+|..++++|+.+..+. +|++|.++|.|||
T Consensus 635 LIF~~t~----~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~-VLVaT~~~~eGID 709 (936)
T 4a2w_A 635 LLFAKTR----ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGID 709 (936)
T ss_dssp EEEESSH----HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS-EEEEECC------
T ss_pred EEEeCCH----HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee-EEEEeCchhcCCc
Confidence 6999999 9999999999865 23566777788899999999999999833444 6778999999999
Q ss_pred CCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHhCCChhhhh
Q 047506 71 LSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA 134 (947)
Q Consensus 71 LtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~Kl~Ld~~V 134 (947)
++.|++||+||++|||....|++|| ||.+++.||.|++.+|++++.+....++..+...+
T Consensus 710 lp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~~~~~ke~~~~~~i 769 (936)
T 4a2w_A 710 IVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAV 769 (936)
T ss_dssp CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877 77788999999999999999774444444444444
No 18
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.01 E-value=1.2e-13 Score=132.44 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=90.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .-+|++|.+++.|+|+..+++||+|
T Consensus 34 iVF~~~~----~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 34 IVFVRKR----ERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 6899888 8899999999987 899999999999999999999999753 2367788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++|+|....|++||++|.||...|.++
T Consensus 106 ~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 106 DMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 9999999999999999999997766443
No 19
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=5.9e-12 Score=120.95 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+++. ...+.+..+|... |+.+..++|+++..+|..+++.|+++. .. +|++|.+++.|+|++.+++||+|
T Consensus 38 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~Gid~~~~~~Vi~~ 109 (175)
T 2rb4_A 38 IIFCQTR----RNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGK-EK-VLITTNVCARGIDVKQVTIVVNF 109 (175)
T ss_dssp EEECSCH----HHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTS-CS-EEEECCSCCTTTCCTTEEEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEEecchhcCCCcccCCEEEEe
Confidence 6899988 9999999999987 999999999999999999999999753 33 56788999999999999999999
Q ss_pred cCCCCC------CchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HSDWSP------VNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 DpdWNP------a~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
|++||| ....|++||++|.|+. -.+|.|++....
T Consensus 110 d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~ 149 (175)
T 2rb4_A 110 DLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDEL 149 (175)
T ss_dssp SCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGH
T ss_pred CCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchH
Confidence 999665 5567999999999965 556777777653
No 20
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.23 E-value=3.5e-12 Score=139.84 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhH
Q 047506 12 SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLR 91 (947)
Q Consensus 12 ~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQ 91 (947)
..++.|.++|... +.++..++|+++..+|..+++.|+++. ..|++++..+++.|+|+..+++||+++++|+|....|
T Consensus 358 ~~~~~l~~~L~~~--~~~v~~~~g~~~~~~r~~i~~~f~~g~-~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q 434 (510)
T 2oca_A 358 SHGKAIFDLIKNE--YDKVYYVSGEVDTETRNIMKTLAENGK-GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQ 434 (510)
T ss_dssp HHHHHHHHHHHTT--CSSEEEESSSTTHHHHHHHHHHHHHCC-SCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHH
T ss_pred HHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHH
Confidence 6777799999987 679999999999999999999999753 3455544499999999999999999999999999999
Q ss_pred HhhhccCCCCcc-eEEEEEEecCCCHHHHHHHH
Q 047506 92 ALQRITLDPQLE-QIKVFRLYSFCTVEEKVLIL 123 (947)
Q Consensus 92 AIdRaHRIGQkK-~V~VyRLVT~nTVEEkIlq~ 123 (947)
++||++|.||.+ .|.||.++...++.++++..
T Consensus 435 ~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~~~ 467 (510)
T 2oca_A 435 TIGRVLRKHGSKTIATVWDLIDDAGVKPKSANT 467 (510)
T ss_dssp HHHHHHTTTCCCCCCEEEEEEEECCBCCSSSSC
T ss_pred HHhcccccCCCCceEEEEEeecchhhhhhhhhh
Confidence 999999999997 79999999988877766543
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.23 E-value=1.9e-11 Score=127.27 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=96.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|+++.. .+|++|.+++.|+|+..+++||+|
T Consensus 254 lvf~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 254 VIFVKSV----QRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQR--RILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp EEECSCH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCC--SEEEESCCCSSCBCCTTEEEEEES
T ss_pred EEEeCcH----HHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCC--cEEEECChhhcCCCcccCCEEEEe
Confidence 5888888 9999999999987 9999999999999999999999987532 367788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHHh
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak~ 126 (947)
|++|++....|++||++|.||...+.+ |++... +++++.....
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~~-~~~~~~~~~~ 368 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDEN-DAKILNDVQD 368 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEE--EEcccc-hHHHHHHHHH
Confidence 999999999999999999998766544 444432 4455554443
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.22 E-value=1.9e-11 Score=125.24 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=92.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+.++|... |+.+..++|+++..+|..+++.|..+. . .+|++|.+++.|+|+..+++||++
T Consensus 242 lvf~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vlv~T~~~~~Gid~~~~~~Vi~~ 313 (367)
T 1hv8_A 242 LVFCKTK----RDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKK-I-RILIATDVMSRGIDVNDLNCVINY 313 (367)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTS-S-SEEEECTTHHHHCCCSCCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCC-C-eEEEECChhhcCCCcccCCEEEEe
Confidence 5888888 8999999999987 999999999999999999999999753 2 356688999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
+++|++....|++||++|.||...+.+ +++....
T Consensus 314 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 347 (367)
T 1hv8_A 314 HLPQNPESYMHRIGRTGRAGKKGKAIS--IINRREY 347 (367)
T ss_dssp SCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTSH
T ss_pred cCCCCHHHhhhcccccccCCCccEEEE--EEcHHHH
Confidence 999999999999999999998776544 4555533
No 23
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.22 E-value=3.8e-11 Score=119.74 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+++.|||+..+++||.|
T Consensus 35 lVF~~~~----~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 35 MVFTRTK----AETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGE-VR-VLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp EEECSSH----HHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSS-CC-EEEECTTTTCSSSCCCBSEEEES
T ss_pred EEEeCCH----HHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCC-Ce-EEEecChhhcCCCCccCcEEEEC
Confidence 6888888 8899999999988 999999999999999999999999753 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++|+|....|.+||++|.|+.. .+|.|++..
T Consensus 107 ~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 107 RLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp SCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred CCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 99999999999999999999864 566677665
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.20 E-value=8.4e-12 Score=126.78 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=92.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|. .+..++|+++..+|..+++.|+++. . -+|++|.+++.|+|+..+++||+|
T Consensus 224 lvf~~~~----~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 224 IVFVRTR----NRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGE-Y-DMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp EEECSCH----HHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTS-C-SEEEECHHHHTTCCCCCBSEEEES
T ss_pred EEEEcCH----HHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCC-C-cEEEEcCccccCCCccCCCEEEEe
Confidence 5787777 66666666554 5789999999999999999999753 2 366788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
+++|++....|++||++|.||...+.+|.. ...++.++|.+..
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999888887 6666776665544
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.17 E-value=6.7e-11 Score=124.18 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=92.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|..+. . .+|++|.+++.|+|+..+++||+|
T Consensus 262 lVf~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vLv~T~~~~~Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 262 IIFCNST----NRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGK-V-RTLVCSDLLTRGIDIQAVNVVINF 333 (400)
T ss_dssp EEECSSH----HHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTS-S-SEEEESSCSSSSCCCTTEEEEEES
T ss_pred EEEEecH----HHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEcCccccCCCccCCCEEEEe
Confidence 5888888 8999999999988 999999999999999999999998753 2 366788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
|++|++....|++||++|.||... +|.|++..-
T Consensus 334 ~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~~ 366 (400)
T 1s2m_A 334 DFPKTAETYLHRIGRSGRFGHLGL--AINLINWND 366 (400)
T ss_dssp SCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGGG
T ss_pred CCCCCHHHHHHhcchhcCCCCCce--EEEEeccch
Confidence 999999999999999999998654 555666653
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.16 E-value=3.8e-11 Score=126.79 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=92.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|+.+. . .+|++|.+++.|+|+..+++||+|
T Consensus 280 lVf~~~~----~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 280 VIFCNTK----RKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGA-S-RVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTS-S-CEEEECGGGSSSCCCTTEEEEEES
T ss_pred EEEEcCH----HHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCC-C-CEEEECChhhCcCCcccCCEEEEE
Confidence 5888888 8999999999987 999999999999999999999999854 2 366789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
|++|++....|++||++|.||.-. +|.|++...
T Consensus 352 ~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~~ 384 (410)
T 2j0s_A 352 DLPNNRELYIHRIGRSGRYGRKGV--AINFVKNDD 384 (410)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGGG
T ss_pred CCCCCHHHHHHhcccccCCCCceE--EEEEecHHH
Confidence 999999999999999999998654 555566543
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.12 E-value=1.1e-10 Score=120.88 Aligned_cols=100 Identities=13% Similarity=0.237 Sum_probs=89.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|+.+. . -+|++|.+++.|+|+..+++||+|
T Consensus 247 lvf~~~~----~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 247 IIFVATK----KTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGR-S-KVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp EEECSCH----HHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTS-C-CEEEECGGGSSSCCCTTEEEEEES
T ss_pred EEEeCCH----HHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCC-C-CEEEECChhhcCCCcccCCEEEEc
Confidence 5888888 8899999999987 899999999999999999999999753 2 367788999999999999999999
Q ss_pred cCCC------CCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDW------SPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdW------NPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++| ++....|++||++|.|+...+.+|
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 9999 999999999999999987655444
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.07 E-value=5.1e-11 Score=135.26 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=65.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCC----CcEEEEeC--------CCCHHHHHHHHHhhhcCCCceEEEEecccCcCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGS----DSYERVDG--------NVLDSKKKAALQNFNNGSGRFVFLLETRACRPS 68 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~G----i~y~RLDG--------sts~~eRq~aId~FN~ds~~fVFLLSTrAGG~G 68 (947)
|||+++. ...+.|.++|... | +++..++| +++..+|..++++|+.+....| |++|.++|.|
T Consensus 402 IIF~~~~----~~~~~l~~~L~~~--~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~v-LVaT~v~~~G 474 (696)
T 2ykg_A 402 ILFVKTR----ALVDALKNWIEGN--PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEG 474 (696)
T ss_dssp EEECSCH----HHHHHHHHHHHHC--TTCCSCCEEC-----------------------------CCSC-SEEEESSCCC
T ss_pred EEEeCcH----HHHHHHHHHHHhC--CCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccE-EEEechhhcC
Confidence 6899999 9999999999986 5 88999955 9999999999999997334444 6788999999
Q ss_pred cCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHH
Q 047506 69 IKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120 (947)
Q Consensus 69 LNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkI 120 (947)
||+..+++||.||++||+....|++|| +|. +...+|.|++.+++++.-
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHHH
Confidence 999999999999999999999998888 664 678899999999987653
No 29
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.07 E-value=2.8e-10 Score=119.90 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=93.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+.++|... |+.+..++|+++..+|..+++.|..+.. -+|++|.+.+.|+|+..+++||+|
T Consensus 280 lVf~~~~----~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~--~vlvaT~~~~~Gidip~v~~Vi~~ 351 (417)
T 2i4i_A 280 LVFVETK----KGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKS--PILVATAVAARGLDISNVKHVINF 351 (417)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSS--CEEEECHHHHTTSCCCCEEEEEES
T ss_pred EEEECCH----HHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCC--CEEEECChhhcCCCcccCCEEEEE
Confidence 5888888 8899999999987 9999999999999999999999987532 367788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC--CHHHHHHHHH
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC--TVEEKVLILA 124 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n--TVEEkIlq~a 124 (947)
|++|++....|.+||++|.|+.-.+ |.|++.. ..-.++.+..
T Consensus 352 ~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 352 DLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNERNINITKDLLDLL 395 (417)
T ss_dssp SCCSSHHHHHHHHTTBCC--CCEEE--EEEECGGGGGGHHHHHHHH
T ss_pred cCCCCHHHHHHhcCccccCCCCceE--EEEEccccHHHHHHHHHHH
Confidence 9999999999999999999986544 4455443 3334444443
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=132.97 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=88.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhh----cCCCcEEEEeCC--------CCHHHHHHHHHhhhcCCCceEEEEecccCcCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQR----FGSDSYERVDGN--------VLDSKKKAALQNFNNGSGRFVFLLETRACRPS 68 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~r----f~Gi~y~RLDGs--------ts~~eRq~aId~FN~ds~~fVFLLSTrAGG~G 68 (947)
|||+++. .+.+.|.++|... +.|+.+..++|+ ++..+|..++++|..+. .-+|++|.++|.|
T Consensus 404 IVF~~s~----~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~~~~~G 477 (699)
T 4gl2_A 404 IIFTKTR----QSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATTVAEEG 477 (699)
T ss_dssp EEECSCH----HHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCCTT
T ss_pred EEEECcH----HHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEccccccC
Confidence 6899999 9999999999853 227899999999 99999999999998843 2356789999999
Q ss_pred cCCCccceeEEecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHH
Q 047506 69 IKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121 (947)
Q Consensus 69 LNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIl 121 (947)
||++.+++||.||++|||....|++||+.|-| ..++-+...++.+....
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~ 526 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERE 526 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHH
Confidence 99999999999999999999999999986665 34444556666554433
No 31
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.04 E-value=1.3e-09 Score=115.83 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=88.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|..+ |+....++|+++..+|..+++.|..+. .. +|++|.+++.||++..+++||.|
T Consensus 32 LVF~~t~----~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~-~~-vLVaT~va~~Gidi~~v~~VI~~ 103 (300)
T 3i32_A 32 MVFTRTK----AETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGE-VR-VLVATDVAARGLDIPQVDLVVHY 103 (300)
T ss_dssp EEECSSH----HHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTS-CC-EEEECSTTTCSTTCCCCSEEEES
T ss_pred EEEECCH----HHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCC-ce-EEEEechhhcCccccceeEEEEc
Confidence 5888887 8899999999987 999999999999999999999999753 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nT 115 (947)
|++|++....|.+||++|.|+. -.+|.|++...
T Consensus 104 d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 104 RMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp SCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred CCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 9999999999999999999986 45667777654
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=121.77 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=80.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+.++|... ++.+..++|+++..+|..+++.|..+. .-+|++|.+++.|+|+..+++||.|
T Consensus 284 lvf~~~~----~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 284 VIFINTR----RKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTDLLARGIDVQQVSLVINY 355 (414)
T ss_dssp EEECSCH----HHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSCEEES
T ss_pred EEEeCCH----HHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECCccccCCCccCCCEEEEe
Confidence 5888888 8899999999987 999999999999999999999998753 3467789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++|++....|++||++|.|+.. .+|.|++..
T Consensus 356 ~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 356 DLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp SCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 99999999999999999999865 556677766
No 33
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.03 E-value=5.2e-10 Score=121.84 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=90.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+.++|... |+.+..++|+++..+|..+++.|..+. . -+|++|.+++.||++..+++||.|
T Consensus 304 lVF~~t~----~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~-~-~vLvaT~v~~rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 304 IVFVETK----RGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGS-M-KVLIATSVASRGLDIKNIKHVINY 375 (434)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSS-C-SEEEECGGGTSSCCCTTCCEEEES
T ss_pred EEEEeCc----HHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCC-C-cEEEEchhhhCCCCcccCCEEEEE
Confidence 6888888 8999999999987 999999999999999999999998753 2 366788999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++|++....|++||++|.|+.-.+.+|
T Consensus 376 d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 376 DMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp SCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 9999999999999999999997665544
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.99 E-value=4.2e-11 Score=124.55 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... ++.+..++|+++..+|..+++.|..+. ..+|++|.+++.|+|+..+++||+|
T Consensus 263 lVf~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 263 VIFCNTR----RKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCC--CcEEEECChhhcCCCcccCCEEEEe
Confidence 6788888 8888899999877 899999999999999999999998643 3467789999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
|++|++....|++||++|.||...+ |.|++..
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ----------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 9999999999999999999986654 4455554
No 35
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.99 E-value=4.4e-10 Score=126.33 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=92.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC------CCcEEEEeCCCCHHHHHHHHHhhhc-CCCceEEEEecccCcCccCCCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG------SDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~------Gi~y~RLDGsts~~eRq~aId~FN~-ds~~fVFLLSTrAGG~GLNLta 73 (947)
|||+++. ...+.|.++|...++ +..+.+++|.++ ++|..++++|.+ .....++|++|.+++.|+++..
T Consensus 443 lVF~~~~----~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~ 517 (590)
T 3h1t_A 443 IVFCVDQ----EHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPT 517 (590)
T ss_dssp EEEESSH----HHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTT
T ss_pred EEEECCH----HHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchh
Confidence 6899998 889999999986521 123788999976 379999999998 4457889999999999999999
Q ss_pred cceeEEecCCCCCCchhHHhhhccCCCC---cceEEEEEEe
Q 047506 74 VHAVIIFHSDWSPVNDLRALQRITLDPQ---LEQIKVFRLY 111 (947)
Q Consensus 74 AdtVIifDpdWNPa~DlQAIdRaHRIGQ---kK~V~VyRLV 111 (947)
+++||++++.|++....|++||++|+|+ +..+.||.++
T Consensus 518 v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 518 CKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred eeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999999999999999999999999994 6779999987
No 36
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.97 E-value=1.4e-09 Score=113.83 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=93.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... ++.+..++|+++..+|..+++.|..+.. -+|++|.+++.|+|+..+++||.|
T Consensus 270 lvf~~~~----~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~vlv~T~~~~~Gidip~~~~Vi~~ 341 (412)
T 3fht_A 270 MIFCHTR----KTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKE--KVLVTTNVCARGIDVEQVSVVINF 341 (412)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSC--SEEEECGGGTSSCCCTTEEEEEES
T ss_pred EEEeCCH----HHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCC--cEEEEcCccccCCCccCCCEEEEE
Confidence 5888888 8899999999987 8999999999999999999999997532 367788999999999999999999
Q ss_pred cCCCCCC------chhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHHH
Q 047506 81 HSDWSPV------NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125 (947)
Q Consensus 81 DpdWNPa------~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~ak 125 (947)
|++|+|. ...|.+||++|.|+...+ |.|+... -+..++....
T Consensus 342 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~-~~~~~~~~i~ 389 (412)
T 3fht_A 342 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDSK-HSMNILNRIQ 389 (412)
T ss_dssp SCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECSH-HHHHHHHHHH
T ss_pred CCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcCh-hhHHHHHHHH
Confidence 9999984 678999999999976544 4445432 2344444443
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.86 E-value=7.8e-09 Score=114.81 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=90.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG-SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~-Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||+... ...+.+..+|...++ ++.+..++|+++..+|..+++.|..+. .-+|++|.+.+.||++..+++||.
T Consensus 343 iVF~~s~----~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 343 IIFAPTV----KFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp EEECSCH----HHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGGGTSSCCCTTCCEEEE
T ss_pred EEEcCcH----HHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcchhhcCCCcccCCEEEE
Confidence 5788777 788888888887655 889999999999999999999999853 246778899999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
||++|++....|++||++|.|+.-.+ +-|++..
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~ 449 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSS--VLFICKD 449 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG
T ss_pred ECCCCchhhhhhhcCccccCCCCceE--EEEEchh
Confidence 99999999999999999999976544 4445544
No 38
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.84 E-value=8.8e-09 Score=116.01 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=93.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFG-SDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~-Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
|||+... ...+.+..+|...++ ++.+..++|+++..+|..+++.|..+. .-+|++|.+++.||++..+++||.
T Consensus 292 iVF~~t~----~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 292 IIFAPTV----KFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp EEECSSH----HHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGGGTSSCCCTTCCEEEE
T ss_pred EEECCcH----HHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcchhhcCCCcccCCEEEE
Confidence 5788777 778888888887655 889999999999999999999999853 346678899999999999999999
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHHHHHHHHH
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
||++|++....|.+||++|.|+.-.+.+ |++.. |...+...
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e~~~~~~l 406 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--ELPFVREL 406 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--GHHHHHHH
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEE--EEccc--HHHHHHHH
Confidence 9999999999999999999998655544 45443 44444433
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.78 E-value=1.3e-08 Score=114.50 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=89.7
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+.+..++|+++..+|..+++.|..+. .. +|++|.+.|.|||+..++.||.|
T Consensus 240 IVf~~sr----~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-vlVaT~a~~~GiD~p~v~~VI~~ 311 (523)
T 1oyw_A 240 IIYCNSR----AKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDD-LQ-IVVATVAFGMGINKPNVRFVVHF 311 (523)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECTTSCTTTCCTTCCEEEES
T ss_pred EEEeCCH----HHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCC-Ce-EEEEechhhCCCCccCccEEEEE
Confidence 5788877 8899999999987 999999999999999999999999854 33 56678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++|++....|.+||++|.|+...+.+|
T Consensus 312 ~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 312 DIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 9999999999999999999998766554
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.67 E-value=4.6e-08 Score=112.28 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=89.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|+++..+|..+++.|..+. . -+|+.|.+.|.|||+...+.||.|
T Consensus 271 IVf~~sr----~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~-~-~VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 271 IIYCFSQ----KDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANE-I-QVVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTS-S-SEEEECTTSCTTCCCSCEEEEEES
T ss_pred EEEeCcH----HHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCC-C-eEEEEechhhcCCCcccccEEEEe
Confidence 5787777 8889999999987 999999999999999999999999753 2 366678999999999999999999
Q ss_pred cCCCCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSDWSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 DpdWNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
++++++....|.+||++|.|+...+.+|
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999997766655
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.56 E-value=1.2e-07 Score=101.10 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=85.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEE-EEeCCCCHHHHHHHHHhhhcCCCceEEEEe---cccCcCccCCCc-cc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYE-RVDGNVLDSKKKAALQNFNNGSGRFVFLLE---TRACRPSIKLSS-VH 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~-RLDGsts~~eRq~aId~FN~ds~~fVFLLS---TrAGG~GLNLta-Ad 75 (947)
|||+... ...+.+..+|... |+.+. .++|. +|. ++.|..+ .+.|++.+ |.+.+.|||+.. ++
T Consensus 256 lVF~~~~----~~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 256 LIFAQTE----EEGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp EEEESSH----HHHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred EEEECCH----HHHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccC
Confidence 6888888 8899999999987 89998 89984 444 9999975 45666665 999999999999 99
Q ss_pred eeEEecCC--CCCCchhHHhhhccCCCCc--ceEEEEEEe
Q 047506 76 AVIIFHSD--WSPVNDLRALQRITLDPQL--EQIKVFRLY 111 (947)
Q Consensus 76 tVIifDpd--WNPa~DlQAIdRaHRIGQk--K~V~VyRLV 111 (947)
+||+||++ |++....|.+||++|.|+. +.-.+|-|+
T Consensus 323 ~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 323 YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999 9999999999999999986 567777777
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.53 E-value=1.1e-08 Score=111.78 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... ++.+..++|+++..+|..+++.|..+. .-+|++|.+++.|||+..+++||.|
T Consensus 337 lvF~~s~----~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~--~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 337 MIFCHTR----KTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCcH----HHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCC--CcEEEEccccccCCccccCCEEEEe
Confidence 5788887 7788888999877 889999999999999999999998753 2367788999999999999999999
Q ss_pred cCCCCC------CchhHHhhhccCCCCcceEEE
Q 047506 81 HSDWSP------VNDLRALQRITLDPQLEQIKV 107 (947)
Q Consensus 81 DpdWNP------a~DlQAIdRaHRIGQkK~V~V 107 (947)
|++|++ ....|.+||++|.|+.-.+.+
T Consensus 409 d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 409 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ---------------------------------
T ss_pred cCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 999987 578899999999997654433
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.50 E-value=1.4e-07 Score=116.05 Aligned_cols=106 Identities=9% Similarity=0.080 Sum_probs=89.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||+... ..++.+.++|...++++.+..++|+++..+|.+++++|.++. + -+|++|.+++.|||+..+++||++
T Consensus 816 lvf~~~v----~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~-~-~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 816 YYLYNDV----ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-F-NVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp EEECCCS----SCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS-C-CEEEESSTTGGGSCCTTEEEEEET
T ss_pred EEEECCH----HHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC-C-cEEEECCcceeeecccCCcEEEEe
Confidence 4677766 667888888888888999999999999999999999999743 3 366788999999999999999999
Q ss_pred cC-CCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 81 HS-DWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 81 Dp-dWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
++ .|++....|.+||++|.|+... +|-++..+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~--~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAY--AWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEE--EEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceE--EEEEECCc
Confidence 99 5899999999999999997554 45555544
No 44
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.43 E-value=3e-07 Score=107.72 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=88.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
+||+... ...+.+..+|... ++.+..++|+++..+|...++.|+...+..-+|++|.+.+.|||+ .+++||++
T Consensus 324 iIf~~s~----~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 324 CIVCFSK----NDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred EEEEcCH----HHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 3565444 6788889999887 899999999999999999999999833334566678999999999 99999999
Q ss_pred cC--------------CCCCCchhHHhhhccCCCCc-ceEEEEEEecC
Q 047506 81 HS--------------DWSPVNDLRALQRITLDPQL-EQIKVFRLYSF 113 (947)
Q Consensus 81 Dp--------------dWNPa~DlQAIdRaHRIGQk-K~V~VyRLVT~ 113 (947)
+. ++++....|.+||++|.|+. ..-.||++...
T Consensus 397 ~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 397 SLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp CSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 99 67788888999999999987 55778888655
No 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.42 E-value=2.9e-08 Score=110.63 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=67.4
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... ++.+..++|+++..+|..+++.|..+. . -+|++|.+++.|+|+..+++||+|
T Consensus 361 LVF~~s~----~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~-~-~VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 361 IIFCKKK----DTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGT-S-KVLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp EEBCSST----TTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSS-C-CCCEECC-----CCCTTCCEEEC-
T ss_pred EEEECCH----HHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCC-C-eEEEeCChhhcCCCccCCCEEEEE
Confidence 5777777 7777888888876 899999999999999999999998753 2 367788999999999999999999
Q ss_pred cCC------CCCCchhHHhhhccCCCCcceEEEE
Q 047506 81 HSD------WSPVNDLRALQRITLDPQLEQIKVF 108 (947)
Q Consensus 81 Dpd------WNPa~DlQAIdRaHRIGQkK~V~Vy 108 (947)
|++ +++....|.+||++|.|+...+.+|
T Consensus 433 ~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ---CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred CCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 999 6788899999999999987666555
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.34 E-value=7.6e-07 Score=108.33 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=80.2
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ecC----CCCCCchhHHhhhccCCCC
Q 047506 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FHS----DWSPVNDLRALQRITLDPQ 101 (947)
Q Consensus 30 y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fDp----dWNPa~DlQAIdRaHRIGQ 101 (947)
+..++|+++..+|..+++.|..+. +. +|++|.+.+.|||+.+.+.||. ||. +|+|....|.+||++|.|+
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~-ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTC-CS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTT
T ss_pred eeEECCCCCHHHHHHHHHHHhcCC-Cc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCC
Confidence 778999999999999999999753 33 5567799999999999999998 999 8999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHH
Q 047506 102 LEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 102 kK~V~VyRLVT~nTVEEkIlq~a 124 (947)
....++|.|++...-+..+..+.
T Consensus 487 d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 487 DDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp CSSEEEEEEECSCCCHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHH
Confidence 99999999998775554544443
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.23 E-value=3e-06 Score=97.75 Aligned_cols=85 Identities=7% Similarity=-0.021 Sum_probs=71.5
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ec-------CCCCCCchhHHhhhcc
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FH-------SDWSPVNDLRALQRIT 97 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fD-------pdWNPa~DlQAIdRaH 97 (947)
.+..++|+++..+|..+.+.|..+ ... +|++|.+.+.|+|+.+.++||. || .++++....|.+|||+
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g-~~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQR-KIK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTT-CSC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred CEEEECCCCCHHHHHHHHHHHHcC-CCe-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 478899999999999999999975 233 5667799999999999999998 99 7889999999999999
Q ss_pred CCCCcceEEEEEEecCCC
Q 047506 98 LDPQLEQIKVFRLYSFCT 115 (947)
Q Consensus 98 RIGQkK~V~VyRLVT~nT 115 (947)
|.|+.++-.+|+|++...
T Consensus 392 R~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 392 RPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCceEEEEeCCch
Confidence 999999999999998765
No 48
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.20 E-value=2.2e-06 Score=98.91 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=75.9
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ec---CCCCCCchhHHhhhccCCCC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FH---SDWSPVNDLRALQRITLDPQ 101 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fD---pdWNPa~DlQAIdRaHRIGQ 101 (947)
.+..++|+++..+|..+.+.|..+. . -+|++|.+.+.|+|+.+.+.||. || .++++....|.+|||+|.|+
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~-~-~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGN-I-KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTS-C-CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCC-C-eEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 4566999999999999999999752 3 35667899999999999999988 77 67889999999999999999
Q ss_pred cceEEEEEEecCCCHH
Q 047506 102 LEQIKVFRLYSFCTVE 117 (947)
Q Consensus 102 kK~V~VyRLVT~nTVE 117 (947)
.++-.+|+|++....+
T Consensus 376 ~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 376 DERGEAIIIVGKRDRE 391 (702)
T ss_dssp CSCEEEEEECCGGGHH
T ss_pred CCCceEEEEecCccHH
Confidence 9999999999987744
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.18 E-value=3.6e-06 Score=97.49 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=77.0
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ec----CCCCCCchhHHhhhccCCC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FH----SDWSPVNDLRALQRITLDP 100 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fD----pdWNPa~DlQAIdRaHRIG 100 (947)
.+..++|+++..+|..+.+.|..+. .. +|++|.+.+.|+|+.+.+.||. || .++++....|.+|||+|.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~-~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g 373 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGI-IK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK 373 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTS-SC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCC-Ce-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCC
Confidence 4888999999999999999999753 33 5567799999999999999887 77 5788888999999999999
Q ss_pred CcceEEEEEEecCCCHHH
Q 047506 101 QLEQIKVFRLYSFCTVEE 118 (947)
Q Consensus 101 QkK~V~VyRLVT~nTVEE 118 (947)
+.+.-.+|.|++....+.
T Consensus 374 ~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 374 YDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TCSEEEEEEECSSSCHHH
T ss_pred CCCCceEEEEecCccHHH
Confidence 999999999999988543
No 50
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4e-06 Score=102.97 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=80.5
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCc--------hhHHhhhccCCCC
Q 047506 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN--------DLRALQRITLDPQ 101 (947)
Q Consensus 30 y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~--------DlQAIdRaHRIGQ 101 (947)
+..++|+++..+|..+++.|..+. +. +|++|.+.+.|||+.+.++||.++..|++.. ..|.+||++|.|+
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~-ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~ 584 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 584 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTC-CC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCC-Ce-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCC
Confidence 788999999999999999999753 33 5567799999999999999999999998876 7799999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhC
Q 047506 102 LEQIKVFRLYSFCTVEEKVLILAKQD 127 (947)
Q Consensus 102 kK~V~VyRLVT~nTVEEkIlq~ak~K 127 (947)
...-++|.++.....+..+..+...+
T Consensus 585 d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 585 DDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CCceEEEEEecCCcCHHHHHHHhcCC
Confidence 99999999999886666665665544
No 51
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.10 E-value=5.1e-06 Score=96.71 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=88.6
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|.++|... |++...++|.++..+|..+++.|..+. ..+|++|.+.+.|+++..++.||++
T Consensus 443 lVf~~t~----~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 443 LVTVLTV----RMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCCCTTCCCTTEEEEEET
T ss_pred EEEECCH----HHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChhhcCccCCCCCEEEEe
Confidence 4676666 8889999999987 899999999999999999999998743 3366788999999999999999999
Q ss_pred cC-----CCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HS-----DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 Dp-----dWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
|. +|++....|.+||++|.|.. .++-|+...+.
T Consensus 515 d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~~~ 552 (664)
T 1c4o_A 515 DADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRVSE 552 (664)
T ss_dssp TTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCCH
T ss_pred CCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCCCH
Confidence 98 78888999999999999743 35556666543
No 52
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.03 E-value=1.3e-05 Score=93.22 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=88.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.|.++|... |++...++|.++..+|..+++.|..+. ..+|+.|...+.|+++..++.||++
T Consensus 449 lVf~~t~----~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 449 LVTTLTK----KMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCCSTTCCCTTEEEEEET
T ss_pred EEEECCH----HHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchhhCCcccCCCCEEEEe
Confidence 4676666 8889999999987 899999999999999999999998743 2367788999999999999999999
Q ss_pred cC-----CCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 81 HS-----DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 81 Dp-----dWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
|. ++++....|.+||++|-+ .-.++-|++..+.
T Consensus 521 d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 521 DADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp TTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred CcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 98 788888899999999973 3446667777654
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.94 E-value=2.1e-06 Score=102.15 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=75.8
Q ss_pred HHHHHHHHHh-hcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC-CCCchhH
Q 047506 14 GDILDDFVRQ-RFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW-SPVNDLR 91 (947)
Q Consensus 14 LDILEdfL~~-rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW-NPa~DlQ 91 (947)
...+.++|.. .|+++.+..+||+++..+|..+++.|.++. . -+|++|.+.+.|+|+..+++||++|+++ +.....|
T Consensus 599 a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~-~-~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR-Y-DILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp HHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS-S-SBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC-C-eEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 4566677777 567889999999999999999999999753 2 3577889999999999999999999985 6777789
Q ss_pred HhhhccCCCCcceEEEE
Q 047506 92 ALQRITLDPQLEQIKVF 108 (947)
Q Consensus 92 AIdRaHRIGQkK~V~Vy 108 (947)
.+||++|.|+.-.+.++
T Consensus 677 r~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp HHHTSCCSSTTCEEECC
T ss_pred HhcccCcCCCCCEEEEE
Confidence 99999999987654443
No 54
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.76 E-value=3.3e-05 Score=85.15 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=77.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEe
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIif 80 (947)
|||+... ...+.+..+|... |+....++|.+ |.++++.|..+. .-+|++|.+.+.|||+.. ++||.|
T Consensus 192 lVF~~s~----~~a~~l~~~L~~~--g~~~~~lh~~~----~~~~~~~f~~g~--~~vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 192 VWFVPSI----KAGNDIANCLRKS--GKRVIQLSRKT----FDTEYPKTKLTD--WDFVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp EEECSSH----HHHHHHHHHHHTT--TCCEEEECTTT----HHHHGGGGGSSC--CSEEEECGGGGSSCCCCC-SEEEEC
T ss_pred EEEcCCH----HHHHHHHHHHHHc--CCeEEECCHHH----HHHHHHhhccCC--ceEEEECCHHHhCcCCCC-CEEEEC
Confidence 5787777 8888999999987 89999999965 467899998653 346678899999999999 999988
Q ss_pred c--------------------CCCCCCchhHHhhhccCCCC-cceEE
Q 047506 81 H--------------------SDWSPVNDLRALQRITLDPQ-LEQIK 106 (947)
Q Consensus 81 D--------------------pdWNPa~DlQAIdRaHRIGQ-kK~V~ 106 (947)
| .+.++....|.+||++|.|. ...+.
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 8 77788889999999999997 33443
No 55
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.75 E-value=1.7e-05 Score=87.41 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=69.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII- 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi- 79 (947)
|||+... ...+.+..+|... |++...++| .+|..+++.|..+. . -+|++|.+.+.|||+. +++||.
T Consensus 181 lVF~~s~----~~a~~l~~~L~~~--~~~v~~lhg----~~R~~~~~~F~~g~-~-~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 181 AWFLPSI----RAANVMAASLRKA--GKSVVVLNR----KTFEREYPTIKQKK-P-DFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp EEECSCH----HHHHHHHHHHHHT--TCCEEECCS----SSCC--------CC-C-SEEEESSSTTCCTTCC-CSEEEEC
T ss_pred EEEeCCH----HHHHHHHHHHHHc--CCCEEEecc----hhHHHHHhhhcCCC-c-eEEEECChhheeeccC-ceEEEeC
Confidence 5777777 7788888999987 899999999 46889999998753 2 3667889999999999 999985
Q ss_pred ------------------ecCCCCCCchhHHhhhccCCC-CcceE
Q 047506 80 ------------------FHSDWSPVNDLRALQRITLDP-QLEQI 105 (947)
Q Consensus 80 ------------------fDpdWNPa~DlQAIdRaHRIG-QkK~V 105 (947)
|+.+.++....|.+||++|.| +.-.+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~ 292 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 292 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceE
Confidence 888899999999999999984 44333
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.73 E-value=3.4e-05 Score=93.90 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=76.7
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCC---------CCCchhHHhhhccCC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW---------SPVNDLRALQRITLD 99 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdW---------NPa~DlQAIdRaHRI 99 (947)
.+..++|++++.+|..+++.|..+. +. +|+.|.+.+.|||+.. .+||+++..+ ++....|.+|||+|.
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~-~k-VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGF-IK-VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCC-Cc-EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 4788999999999999999999753 33 5667899999999999 6666654443 788889999999999
Q ss_pred CCcceEEEEEEecCCCHHHHHHHHH
Q 047506 100 PQLEQIKVFRLYSFCTVEEKVLILA 124 (947)
Q Consensus 100 GQkK~V~VyRLVT~nTVEEkIlq~a 124 (947)
|+...-+||.+...+..++.++...
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHHH
Confidence 9999999999997777777666543
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.69 E-value=1.8e-05 Score=87.56 Aligned_cols=100 Identities=11% Similarity=0.160 Sum_probs=79.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII- 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi- 79 (947)
|||+... ...+.+..+|... |+....++|. +|..+++.|..+. .-+|++|.+.+.|||+.. ++||.
T Consensus 194 LVF~~s~----~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~--~~iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 194 VWFVASV----KMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGD--WDFVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp EEECSCH----HHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCC--CSEEEESSCC---CCCSC-SEEEEC
T ss_pred EEEeCCh----HHHHHHHHHHHhc--CCcEEecCHH----HHHHHHhhccCCC--ceEEEECChHHhCeecCC-CEEEEC
Confidence 5787777 8889999999987 9999999994 7888899998753 235678899999999998 99998
Q ss_pred -------------------ecCCCCCCchhHHhhhccCCCCcceEEEEEEecCC
Q 047506 80 -------------------FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFC 114 (947)
Q Consensus 80 -------------------fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~n 114 (947)
||++.++....|.+||++|.|.. +-.+|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 77999999999999999999963 23445666665
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.59 E-value=6.3e-05 Score=88.11 Aligned_cols=93 Identities=11% Similarity=0.163 Sum_probs=75.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII- 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi- 79 (947)
|||+... ...+.+..+|... ++....++|. +|..+++.|..+. . -+|++|.+.+.|||+. +++||.
T Consensus 414 lVF~~s~----~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~-~-~VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 414 VWFVASV----KMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGD-W-DFVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp EEECSSH----HHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCC-C-SEEEECGGGGTTCCCC-CSEEEEC
T ss_pred EEEECCH----HHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCC-c-eEEEECchhhcceeeC-CcEEEEC
Confidence 5777776 7888899999987 8999999993 8999999998753 2 3567889999999999 999997
Q ss_pred -------------------ecCCCCCCchhHHhhhccCC-CCcceEE
Q 047506 80 -------------------FHSDWSPVNDLRALQRITLD-PQLEQIK 106 (947)
Q Consensus 80 -------------------fDpdWNPa~DlQAIdRaHRI-GQkK~V~ 106 (947)
||.+.++....|.+||++|. |+.-.+.
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai 527 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEY 527 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEE
Confidence 45566677888999999999 5554443
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.57 E-value=8.3e-05 Score=81.70 Aligned_cols=96 Identities=8% Similarity=0.138 Sum_probs=77.1
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccce----
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHA---- 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdt---- 76 (947)
|||+... ...+.+.++|... ++....++|. +|..+++.|..+. .-+|++|.+.+.|+|+. .++
T Consensus 175 lVF~~~~----~~~~~l~~~L~~~--~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 175 VWFVHSI----KQGAEIGTCLQKA--GKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEESTT----THHHHTTHHHHSC--CSEEEECGGGGTSCCCC-CSEEEEC
T ss_pred EEEeCCH----HHHHHHHHHHHHc--CCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECchHHcCcccC-CcEEEec
Confidence 4676666 7788888999887 8999999997 6888999998753 23667889999999998 555
Q ss_pred -------------eEEecCCCCCCchhHHhhhccCCCCc-ceEEEEE
Q 047506 77 -------------VIIFHSDWSPVNDLRALQRITLDPQL-EQIKVFR 109 (947)
Q Consensus 77 -------------VIifDpdWNPa~DlQAIdRaHRIGQk-K~V~VyR 109 (947)
||.++.+.++....|.+||++|.|.. ..+.+|.
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 56778888999999999999999954 4455553
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.52 E-value=2.9e-05 Score=92.01 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=83.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHh---------hcCCCcEEEEeCCCCHHHHHHHHHhhhc---CCCceEEEEecccCcCc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQ---------RFGSDSYERVDGNVLDSKKKAALQNFNN---GSGRFVFLLETRACRPS 68 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~---------rf~Gi~y~RLDGsts~~eRq~aId~FN~---ds~~fVFLLSTrAGG~G 68 (947)
|||+... ...+.+..+|.. ...++.+..++|+++..+|..+++.|.. +.+..-+|++|.+.+.|
T Consensus 307 LVF~~~~----~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~G 382 (773)
T 2xau_A 307 LLFLTGE----DEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETS 382 (773)
T ss_dssp EEECSCH----HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHT
T ss_pred EEECCCH----HHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhC
Confidence 4676665 555555555553 1258889999999999999999999971 13345677788999999
Q ss_pred cCCCccceeEEecC------------------CCCCCchhHHhhhccCCCCcceEEEEEEecCCCH
Q 047506 69 IKLSSVHAVIIFHS------------------DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTV 116 (947)
Q Consensus 69 LNLtaAdtVIifDp------------------dWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTV 116 (947)
||+...++||.++. +.++....|.+||++|. ++=.+|+|+++...
T Consensus 383 idIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 383 LTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred cCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999665 55667778999999988 45678999976544
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.44 E-value=0.00014 Score=87.50 Aligned_cols=95 Identities=7% Similarity=0.006 Sum_probs=80.0
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS-------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt-------- 72 (947)
|||+... ...+.|...|..+ |++...|+|.....+|..+..+|..+ . +++.|..+|-|+...
T Consensus 436 LVft~s~----~~se~Ls~~L~~~--gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATdmAgRG~DI~l~~~V~~~ 505 (844)
T 1tf5_A 436 LVGTVAV----ETSELISKLLKNK--GIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATNMAGRGTDIKLGEGVKEL 505 (844)
T ss_dssp EEEESCH----HHHHHHHHHHHTT--TCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEETTSSTTCCCCCCTTSGGG
T ss_pred EEEECCH----HHHHHHHHHHHHC--CCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCCccccCcCccccchhhhc
Confidence 6888888 8999999999988 99999999998766665444445433 2 567789999999998
Q ss_pred ccceeEEecCCCCCCchhHHhhhccCCCCcceE
Q 047506 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQI 105 (947)
Q Consensus 73 aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V 105 (947)
+..+||.||.+-++..+.|.+||++|.|..=..
T Consensus 506 ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 506 GGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred CCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 778999999999999999999999999986543
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.36 E-value=0.00021 Score=82.75 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=77.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcccee---
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAV--- 77 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtV--- 77 (947)
|||+... ...+.+..+|... ++....++|. +|.++++.|..+. .-+|++|.+.+.|||+. +++|
T Consensus 359 LVF~~s~----~~a~~l~~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~--~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 359 VWFVPSI----KAGNDIANCLRKS--GKRVIQLSRK----TFDTEYPKTKLTD--WDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp EEECSSH----HHHHHHHHHHHHT--TCCEEEECTT----THHHHTTHHHHSC--CSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred EEEECCh----hHHHHHHHHHHHc--CCcEEEEChH----HHHHHHHhhcCCC--cEEEEECcHHHcCcccC-ceEEEEC
Confidence 5788777 8889999999987 9999999984 7888999998753 23667889999999996 9998
Q ss_pred -----------------EEecCCCCCCchhHHhhhccCCCCcceEEEEEEec
Q 047506 78 -----------------IIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYS 112 (947)
Q Consensus 78 -----------------IifDpdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT 112 (947)
|.||.+-++....|.+||++|.|..+- .+|.|++
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 445555566678899999999986433 2566665
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.33 E-value=0.00034 Score=83.46 Aligned_cols=95 Identities=7% Similarity=0.040 Sum_probs=77.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCC--------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS-------- 72 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLt-------- 72 (947)
|||+... ...+.|...|... |++...++|.....+|.-+...|..+ . +++.|..+|-|+...
T Consensus 478 LVFt~S~----e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~~g---~-VtVATdmAgRGtDI~lg~~V~~~ 547 (822)
T 3jux_A 478 LVGTTSI----EKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQKG---M-VTIATNMAGRGTDIKLGPGVAEL 547 (822)
T ss_dssp EEEESSH----HHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHSTT---C-EEEEETTTTTTCCCCCCTTTTTT
T ss_pred EEEECCH----HHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCCCC---e-EEEEcchhhCCcCccCCcchhhc
Confidence 6898888 8999999999988 99999999985444444334444433 2 666778889999887
Q ss_pred ccceeEEecCCCCCCchhHHhhhccCCCCcceE
Q 047506 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQI 105 (947)
Q Consensus 73 aAdtVIifDpdWNPa~DlQAIdRaHRIGQkK~V 105 (947)
+..+||.+|.+-++..+.|.+||++|.|+.=..
T Consensus 548 GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 548 GGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred CCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 667999999999999999999999999987554
No 64
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.29 E-value=0.00014 Score=88.84 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=53.5
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEe---cccCcCccCCCcc-ce
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLE---TRACRPSIKLSSV-HA 76 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLS---TrAGG~GLNLtaA-dt 76 (947)
|||+... ...+.+..+|... ++...++|.+ ..+++.|..+. ..|++++ |.+.+.||++..+ ++
T Consensus 279 LVF~~t~----~~a~~l~~~L~~~---~~v~~lhg~~-----~~~l~~F~~G~-~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 279 IIYARTG----EEAEEIYESLKNK---FRIGIVTATK-----KGDYEKFVEGE-IDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp EEEESSH----HHHHHHHHTTTTS---SCEEECTTSS-----SHHHHHHHHTS-CSEEEEECC------CCSCCTTTCCE
T ss_pred EEEEcCH----HHHHHHHHHHhhc---cCeeEEeccH-----HHHHHHHHcCC-CcEEEEecCCCCeeEeccccCCcccE
Confidence 5888777 8888888888754 7899999987 47889998753 4566664 8999999999995 99
Q ss_pred eEEecCC
Q 047506 77 VIIFHSD 83 (947)
Q Consensus 77 VIifDpd 83 (947)
||+||.+
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9999999
No 65
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.02 E-value=0.00074 Score=81.35 Aligned_cols=95 Identities=6% Similarity=-0.087 Sum_probs=80.3
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcc------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV------ 74 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaA------ 74 (947)
|||+... ...+.|...|..+ |+++..|+|.....+|..+..+|..+ . +++.|..+|-|+.....
T Consensus 445 LVft~si----e~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~gn~~~~ 514 (853)
T 2fsf_A 445 LVGTISI----EKSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATNMAGRGTDIVLGGSWQAE 514 (853)
T ss_dssp EEEESSH----HHHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEESCCSSCSCCCTTCCHHHH
T ss_pred EEEECcH----HHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecccccCCcCccCCCchHhh
Confidence 6888888 8899999999988 99999999998777776666777654 2 66677888999988752
Q ss_pred -------------------------------ceeEEecCCCCCCchhHHhhhccCCCCcceE
Q 047506 75 -------------------------------HAVIIFHSDWSPVNDLRALQRITLDPQLEQI 105 (947)
Q Consensus 75 -------------------------------dtVIifDpdWNPa~DlQAIdRaHRIGQkK~V 105 (947)
.+||.+|.+-++..+.|.+||++|.|..=..
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 515 VAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred hhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 6999999999999999999999999986543
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.92 E-value=0.00055 Score=84.33 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=60.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEE-EEeCCCCHHHHHHHHHhhhcCCCceEEEEe---cccCcCccCCCc-cc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYE-RVDGNVLDSKKKAALQNFNNGSGRFVFLLE---TRACRPSIKLSS-VH 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~-RLDGsts~~eRq~aId~FN~ds~~fVFLLS---TrAGG~GLNLta-Ad 75 (947)
|||+... ...+.+..+|... |+... .++| +|.+ ++.|..+. ..|++.+ |.+.+.||++.. .+
T Consensus 313 LVF~~s~----~~a~~l~~~L~~~--g~~~~~~lhg-----~rr~-l~~F~~G~-~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 313 LIFAQTE----EEGKELYEYLKRF--KFNVGETWSE-----FEKN-FEDFKVGK-INILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp EEEESSS----HHHHHHHHHHHHT--TCCEEESSSS-----HHHH-HHHHHHTS-CSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred EEEECcH----HHHHHHHHHHHhC--CCCeeeEecC-----cHHH-HHHHHCCC-CCEEEEecCCCCeeEecCcCCCCCC
Confidence 6888888 8899999999987 89998 9998 3555 99999853 4566654 899999999999 99
Q ss_pred eeEEecCCC
Q 047506 76 AVIIFHSDW 84 (947)
Q Consensus 76 tVIifDpdW 84 (947)
+||+||++-
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999999986
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.91 E-value=0.0013 Score=79.78 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=78.8
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCcc------
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV------ 74 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaA------ 74 (947)
|||+... ...+.|...|..+ |+++..|+|.....+|.-+...|..+ . +++.|..+|-|+.....
T Consensus 464 LVft~Si----e~sE~Ls~~L~~~--Gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~~~~~~~ 533 (922)
T 1nkt_A 464 LIGTTSV----ERSEYLSRQFTKR--RIPHNVLNAKYHEQEATIIAVAGRRG---G-VTVATNMAGRGTDIVLGGNVDFL 533 (922)
T ss_dssp EEEESCH----HHHHHHHHHHHHT--TCCCEEECSSCHHHHHHHHHTTTSTT---C-EEEEETTCSTTCCCCTTCCHHHH
T ss_pred EEEECCH----HHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecchhhcCccccCCCCHHHH
Confidence 6888888 8899999999988 99999999998766665555666544 2 56677888999888753
Q ss_pred ----------------------------------------------ceeEEecCCCCCCchhHHhhhccCCCCcceE
Q 047506 75 ----------------------------------------------HAVIIFHSDWSPVNDLRALQRITLDPQLEQI 105 (947)
Q Consensus 75 ----------------------------------------------dtVIifDpdWNPa~DlQAIdRaHRIGQkK~V 105 (947)
.+||.+|.+-++..+.|.+||++|.|..=..
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s 610 (922)
T 1nkt_A 534 TDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGES 610 (922)
T ss_dssp HHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEE
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeE
Confidence 5999999999999999999999999986543
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.86 E-value=0.00072 Score=79.59 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=73.9
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE-
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII- 79 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi- 79 (947)
|||+... ...+.+.++|... |+....++|+++..+ |..+. . -+|++|.+.+.||++. .++||.
T Consensus 400 LVFv~Tr----~~ae~la~~L~~~--g~~v~~lHG~l~q~e-------r~~~~-~-~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 400 LIFCHSK----KKCDELAAKLSGL--GINAVAYYRGLDVSV-------IPTIG-D-VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp EEECSCH----HHHHHHHHHHHTT--TCCEEEECTTSCGGG-------SCSSS-C-EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred EEEeCCH----HHHHHHHHHHHhC--CCcEEEecCCCCHHH-------HHhCC-C-cEEEECChHHccCCCC-CcEEEec
Confidence 5777777 8889999999987 999999999998764 33332 2 5777889999999985 999994
Q ss_pred ---------ec-----------CCCCCCchhHHhhhccCCCCcceEEEEEEecCCCHH
Q 047506 80 ---------FH-----------SDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVE 117 (947)
Q Consensus 80 ---------fD-----------pdWNPa~DlQAIdRaHRIGQkK~V~VyRLVT~nTVE 117 (947)
|| .+-++....|.+||++| |..-. |.|++....+
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~~ 517 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGERP 517 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCBC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchhh
Confidence 33 34455677899999999 66543 7888876543
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.53 E-value=0.1 Score=64.34 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=59.9
Q ss_pred HHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEEecCCCCCCchhHHhhhccCCCCc-c-eEEEEEEecCCCHHH
Q 047506 41 KKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQL-E-QIKVFRLYSFCTVEE 118 (947)
Q Consensus 41 eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIifDpdWNPa~DlQAIdRaHRIGQk-K-~V~VyRLVT~nTVEE 118 (947)
.|..++++|.++. +. +|+.+.....|++.... +|+++|.+..++.-.||+||+.|.+.. | ...|+.++. +.+
T Consensus 637 ~R~~i~~~Fk~g~-i~-ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~---~~~ 710 (1038)
T 2w00_A 637 YYRDLAQRVKNQD-ID-LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD---LER 710 (1038)
T ss_dssp HHHHHHHHHHTTS-SS-EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC---CHH
T ss_pred HHHHHHHHHHcCC-Ce-EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc---cHH
Confidence 4888899998753 44 45567888999999999 678899999999999999999999874 3 477777773 455
Q ss_pred HHHHH
Q 047506 119 KVLIL 123 (947)
Q Consensus 119 kIlq~ 123 (947)
.+...
T Consensus 711 ~l~~A 715 (1038)
T 2w00_A 711 STIDA 715 (1038)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.35 E-value=0.076 Score=68.54 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=66.0
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeE----EecCC------CCCCchhHHhhhccC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVI----IFHSD------WSPVNDLRALQRITL 98 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVI----ifDpd------WNPa~DlQAIdRaHR 98 (947)
.+...||+++..+|..+-+.|..+. .. +|++|.+.+.|+||.+-+.|| +||+. ..+....|.+|||+|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~-i~-vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKH-IQ-VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTC-CC-EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCC-Ce-EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 3667899999999999999999753 44 455678889999998766665 36654 345667899999999
Q ss_pred CCCcceEEEEEEecCCCHHH
Q 047506 99 DPQLEQIKVFRLYSFCTVEE 118 (947)
Q Consensus 99 IGQkK~V~VyRLVT~nTVEE 118 (947)
.|.-..=.++-+...+..+.
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCH
T ss_pred CCCCCccEEEEEecchhHHH
Confidence 99866666666666655443
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=92.69 E-value=0.16 Score=65.58 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=61.7
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE----ecC------CCCCCchhHHhhhccC
Q 047506 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII----FHS------DWSPVNDLRALQRITL 98 (947)
Q Consensus 29 ~y~RLDGsts~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi----fDp------dWNPa~DlQAIdRaHR 98 (947)
.+...||+++..+|..+.+.|..+. +.|+ ++|.+.+.|+||.+-..||. ||. +..+....|.+|||+|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~-i~VL-vaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGA-IQVV-VASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTS-BCEE-EEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC-CeEE-EEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 4677899999999999999999853 5555 45688899999986544442 222 2345567799999999
Q ss_pred CCCcceEEEEEEecC
Q 047506 99 DPQLEQIKVFRLYSF 113 (947)
Q Consensus 99 IGQkK~V~VyRLVT~ 113 (947)
.|....=.++-+...
T Consensus 1293 ~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp TTTCSCEEEEEEEEG
T ss_pred CCCCCceEEEEEecc
Confidence 999776666655544
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=81.71 E-value=1.3 Score=50.23 Aligned_cols=74 Identities=5% Similarity=0.189 Sum_probs=41.2
Q ss_pred CEEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhhcCCCceEEE-EecccCcCccCCCc----cc
Q 047506 1 MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFL-LETRACRPSIKLSS----VH 75 (947)
Q Consensus 1 LIFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN~ds~~fVFL-LSTrAGG~GLNLta----Ad 75 (947)
|||+.+- .+|+.+.+.|. +++ +.+.|.. .+|..++++|..+. .|++ +.+.....||++.. +.
T Consensus 388 lvff~S~----~~~~~v~~~l~----~~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 388 LVFFPSY----EMLESVRIHLS----GIP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp EEEESCH----HHHHHHHTTCT----TSC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------CEE
T ss_pred EEEeCCH----HHHHHHHHHhc----cCc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCccccc
Confidence 4677666 77777766654 233 3456654 46889999998743 2333 35678899999997 78
Q ss_pred eeEEecCCCCCC
Q 047506 76 AVIIFHSDWSPV 87 (947)
Q Consensus 76 tVIifDpdWNPa 87 (947)
.||+++.++-+.
T Consensus 455 ~Vii~~lPf~~~ 466 (540)
T 2vl7_A 455 SLVLAGLPYPNV 466 (540)
T ss_dssp EEEEESCCCCCT
T ss_pred EEEEECCCCCCC
Confidence 999999987443
No 73
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=76.52 E-value=1.8 Score=32.15 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHh
Q 047506 532 LENEYAEKFKELERDRDVRLEN 553 (947)
Q Consensus 532 l~~e~~k~f~el~~~~d~~lk~ 553 (947)
|.+||.|+|+||-+-|+.|||.
T Consensus 9 lheeflkkfeellklheerlkk 30 (32)
T 1m3w_A 9 LHEEFLKKFEELLKLHEERLKK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999985
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.94 E-value=9.3 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=15.6
Q ss_pred hccccccchhhHHHHHHHHHHHHHh
Q 047506 405 HLHFSCKKGEADYVYSLLQCLKEVF 429 (947)
Q Consensus 405 ~l~f~c~~~~~~~vy~~l~~~k~~f 429 (947)
..+..|+.....|.-..+..+....
T Consensus 388 ~~~~cc~~~~~~~~~~~~~~l~~~~ 412 (597)
T 3oja_B 388 EHGLCCKESDKPYLDRLLQYIALTS 412 (597)
T ss_dssp ETTEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCccccCCCccchhHHHHHhhHHH
Confidence 3456777777777666655555443
No 75
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=70.67 E-value=6 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhh
Q 047506 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSD 567 (947)
Q Consensus 533 ~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e 567 (947)
..||.++|++++++||+-|.++|..++..++++..
T Consensus 63 kse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 63 KAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588889999999999999999888877777665
No 76
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=54.05 E-value=36 Score=37.04 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=64.1
Q ss_pred hhhhhhhhccHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHH
Q 047506 324 LQKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAK 403 (947)
Q Consensus 324 SqKsLHl~LKpEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~ 403 (947)
..+.|...++ +|..+|+.|.||++|...|.+|+.-++...-+--.. ..++--|..++|..+.+.-.--+|-..++
T Consensus 122 ~er~L~~a~~-~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~prtl~eI~~~~- 196 (345)
T 4bbr_M 122 KDNEVQAAFA-KITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEVARTFKEIQSLI- 196 (345)
T ss_dssp SSSSTTHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCCBCCHHHHHHHH-
T ss_pred HHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCCCccHHHHHHHh-
Confidence 4556655555 999999999999999999999998887755443332 35555677788888877776667665544
Q ss_pred hhccccccchhhHHHHHHH
Q 047506 404 KHLHFSCKKGEADYVYSLL 422 (947)
Q Consensus 404 ~~l~f~c~~~~~~~vy~~l 422 (947)
.+++.+.-..|..|
T Consensus 197 -----~v~~keigr~~k~l 210 (345)
T 4bbr_M 197 -----HVKTKEFGKTLNIM 210 (345)
T ss_dssp -----TCCTTHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHH
Confidence 26666776777665
No 77
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=49.98 E-value=58 Score=34.56 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=53.8
Q ss_pred cCChhhHHHHHHHHHHHHHhhhhcc-CChhhhHHHHHhh-ccccccchhhHHHHHHHHHHHHHhh----hhccccccccC
Q 047506 368 REPPSMLQAFEISLCWTAASLRKQK-IDHKESLELAKKH-LHFSCKKGEADYVYSLLQCLKEVFE----LSMKDVSKYQS 441 (947)
Q Consensus 368 ~ep~silqAF~islcW~aAsl~~~k-~d~~~sl~la~~~-l~f~c~~~~~~~vy~~l~~~k~~f~----~~~~~~~~~~s 441 (947)
-.-+|.+|.|+-||--|=-.+.+++ +++.-.=.-+... +...-+...-+.+...+--....|. |.+...+..+|
T Consensus 71 ~~~pSLFQGFeAsLPiIne~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~lp~gi~~e~I~~SYS 150 (242)
T 3uux_B 71 KKETSLFQGFKSYLPIAELAIENTERLNYDTNGTSGTVGAKDVMSKTNERDEIHTELPNFQDSFLIPPGVETAAISSSYS 150 (242)
T ss_dssp -CCCCHHHHHHHHHHHHGGGGC----------------------------------------------CCCCCGGGGSCC
T ss_pred CCCcchhhccccccHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccCCCCCCHHHhccccc
Confidence 4567999999999998888877664 2221111111111 1111111122223444444556663 33444444444
Q ss_pred cccccc-cccchhhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 442 NARLSQ-SEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLET 507 (947)
Q Consensus 442 ~~~~s~-s~~~~~~~e~~~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~ 507 (947)
-+.+.. +..+.+.-|+.++-|+-.+--|.+|..| ++.|..|++-=.++ .+.+|++.+.||.
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~K----I~~L~~mR~~vl~R-LA~lEqdEl~LE~ 212 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVE----VENLRQKKEKLLGK-IANIEQNQLLLED 212 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence 333221 1122222356677777777767777655 44555554433333 2455666666654
No 78
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=48.26 E-value=70 Score=31.25 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=61.6
Q ss_pred hhhhhhhccHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHHh
Q 047506 325 QKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKK 404 (947)
Q Consensus 325 qKsLHl~LKpEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~~ 404 (947)
++.|. .-..+|..+|.-|.||.+|...|..|+.-.+...-+... -.++.-.|-.|+|+.+.+....-+|-...+
T Consensus 6 er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~~p~~l~di~~~~-- 79 (200)
T 1ais_B 6 ERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLKVPRTLDEIADIA-- 79 (200)
T ss_dssp --CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHTCCCCHHHHHHHT--
T ss_pred HHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcCCCCCHHHHHHHH--
Confidence 44443 445689999999999999999999999888776655434 256777788899999988887777665443
Q ss_pred hccccccchhhHHHHHH
Q 047506 405 HLHFSCKKGEADYVYSL 421 (947)
Q Consensus 405 ~l~f~c~~~~~~~vy~~ 421 (947)
.+++.+.-..|..
T Consensus 80 ----~v~~~~i~~~~~~ 92 (200)
T 1ais_B 80 ----RVDKKEIGRSYRF 92 (200)
T ss_dssp ----TSCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHH
Confidence 2454444444444
No 79
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=42.85 E-value=1.2e+02 Score=29.64 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcccc-cCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHHhhccccccchh
Q 047506 336 MAKLCEVLKLREDVKDTVGKFLEYLMINHRVD-REPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGE 414 (947)
Q Consensus 336 isKLceIL~LPenVK~mv~~fLEYv~~Nh~v~-~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~~~l~f~c~~~~ 414 (947)
|..+|.-|.||+.|..+|.++++.......+. +.|.+|-- |.-++|+.+++.+...+|....+. +++..
T Consensus 112 i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAa----Aaly~A~~~~~~~~t~~ei~~~~~------vs~~t 181 (200)
T 1ais_B 112 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVA----AALYIASLLEGEKRTQREVAEVAR------VTEVT 181 (200)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHH----HHHHHHHHHTTCCCCHHHHHHHHT------CCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHH----HHHHHHHHHhCCCCCHHHHHHHhC------CCHHH
Confidence 67889999999999999999999999876654 55555443 455778888888887776543332 45656
Q ss_pred hHHHHHHH
Q 047506 415 ADYVYSLL 422 (947)
Q Consensus 415 ~~~vy~~l 422 (947)
..-.|..|
T Consensus 182 i~~~~~~l 189 (200)
T 1ais_B 182 VRNRYKEL 189 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66556555
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.48 E-value=71 Score=35.91 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 047506 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAA 514 (947)
Q Consensus 479 q~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~a 514 (947)
+|++++.+|. .+|++.|++.+..|..-.+....
T Consensus 53 rLqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 53 RMKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred hHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhH
Confidence 3555555555 55555555555555555444433
No 81
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=41.40 E-value=1.1e+02 Score=30.18 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChhhhHHHHHhhccccccch
Q 047506 334 PEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKG 413 (947)
Q Consensus 334 pEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl~la~~~l~f~c~~~ 413 (947)
..|..+|.-|.||+.|..+|..+++..+...-+..-+++.+-| |-.++||.+++.+...++... -+.+++.
T Consensus 104 ~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAa---AaiylA~~~~~~~~~~~~i~~------~~~v~~~ 174 (207)
T 1c9b_A 104 DFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA---AAIYMASQASAEKRTQKEIGD------IAGVADV 174 (207)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHH---HHHHHHHHTSSSCCCHHHHHH------HHTCCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHH---HHHHHHHHHHCCCCCHHHHHH------HhCCCHH
Confidence 3467889999999999999999999999876655555554433 556788888888876665321 2356777
Q ss_pred hhHHHHHHHHHH
Q 047506 414 EADYVYSLLQCL 425 (947)
Q Consensus 414 ~~~~vy~~l~~~ 425 (947)
...-.|..|...
T Consensus 175 tI~~~~~~l~~~ 186 (207)
T 1c9b_A 175 TIRQSYRLIYPR 186 (207)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 777777776443
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=38.48 E-value=32 Score=40.04 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCceEEEEe-cccCcCccCCCc--cceeEEecCCC
Q 047506 35 GNVLDSKKKAALQNFNNGSGRFVFLLE-TRACRPSIKLSS--VHAVIIFHSDW 84 (947)
Q Consensus 35 Gsts~~eRq~aId~FN~ds~~fVFLLS-TrAGG~GLNLta--AdtVIifDpdW 84 (947)
.+++..+|..++++|. + ...|++.. ...-..|+++.. ...|||...+|
T Consensus 477 q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 477 RGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp TTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEESSCCC
T ss_pred CCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEEEcCCC
Confidence 3344568999999999 3 33455543 246789999985 77999998776
No 83
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=38.18 E-value=3.3e+02 Score=27.55 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhcCC
Q 047506 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK 587 (947)
Q Consensus 533 ~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e~ka~w~e~~ks~~~~el~~~ 587 (947)
+.+|.|+..+++.+..+.+- .+.+++|.+.-.-+..+|+.|..=|...|.+.
T Consensus 59 ~~~~ek~~kq~e~~~~i~~S---~~~~~aR~~vL~ar~e~i~~v~~~a~~~L~~~ 110 (233)
T 4efa_E 59 DGNFKSKLKKAMLSQQITKS---TIANKMRLKVLSAREQSLDGIFEETKEKLSGI 110 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577777777766655443 34456666666666677777777777776543
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.42 E-value=1.5e+02 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=10.2
Q ss_pred HHHhhhhhhhhhhHHHHH
Q 047506 560 ASMKKLSDKQTSWVEQVK 577 (947)
Q Consensus 560 a~r~k~~e~ka~w~e~~k 577 (947)
+....+++.-+.|..++|
T Consensus 558 ~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333445555666666666
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.26 E-value=2.5e+02 Score=32.99 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhHHHHHHhHHH
Q 047506 536 YAEKFKELERDRDVRLENLEA 556 (947)
Q Consensus 536 ~~k~f~el~~~~d~~lk~l~~ 556 (947)
-.+.+..||...+..+.+|..
T Consensus 115 LRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444433
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.41 E-value=1.2e+02 Score=33.47 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 047506 493 DIDKRYEEQKAQLE 506 (947)
Q Consensus 493 ~~~~~~e~~ka~le 506 (947)
++.++||+..++++
T Consensus 414 ~~~~~~~~~~~~~~ 427 (487)
T 3oja_A 414 AIVKRYEEMYVEQQ 427 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 87
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.38 E-value=1.1e+02 Score=29.02 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=38.3
Q ss_pred EEEeecCChh---hHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhhh
Q 047506 2 CLFACSIGGG---SLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN 50 (947)
Q Consensus 2 IFSQft~gst---~mLDILEdfL~~rf~Gi~y~RLDGsts~~eRq~aId~FN 50 (947)
||++..||.- .-...+..+|... |+.|..+|=+.....|..++++.+
T Consensus 4 vYtt~~c~~c~~kk~c~~aK~lL~~k--gV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 4 VYIASSSGSTAIKKKQQDVLGFLEAN--KIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEECTTCSCHHHHHHHHHHHHHHHHT--TCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEecCCCCCccchHHHHHHHHHHHHC--CCceEEEECCCCHHHHHHHHHhcc
Confidence 6777776654 2246777889888 999999999999999999999984
No 88
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.21 E-value=2.1e+02 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047506 480 MAKLRHKQLEEKKDIDKRYEEQKAQLETKKR 510 (947)
Q Consensus 480 ~~kl~~~q~eek~~~~~~~e~~ka~le~~~~ 510 (947)
...+.-.+++.|+.|+-.+|.|.|++.++|.
T Consensus 48 ~d~~~K~HE~kklqLkse~e~E~ae~k~KYD 78 (115)
T 3vem_A 48 SENSKKTFEEKKSILKAELERKMAEVQAEFR 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677777777777777777777754
No 89
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=27.47 E-value=87 Score=28.52 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 047506 455 QELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIR 517 (947)
Q Consensus 455 ~e~~~l~~kd~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~~~e~avIr 517 (947)
+++.+-.++.+-....+|-|+|-.+|+.|.-.. | ..|++.-+++..||..|.+.-+
T Consensus 17 ~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~e---K----~pye~kA~~dK~rYekEm~~Y~ 72 (91)
T 1l8y_A 17 QSVIGDYLARFKNDRVKALKAMEMTWNNMEKKE---K----LMWIKKAAEDQKRYERELSEMR 72 (91)
T ss_dssp HHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGH---H----HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH---H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655578899999999999886432 2 3455555666666666665543
No 90
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=27.43 E-value=43 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047506 468 SIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLET 507 (947)
Q Consensus 468 ~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~ 507 (947)
+..+|-|.|-.+|+.| +||+.+..+.++++++.+.
T Consensus 30 ~~~eisk~lg~~Wk~l-----~eK~~y~~~A~~~k~~y~~ 64 (73)
T 1wxl_A 30 KVTEIAKKGGEMWKEL-----KDKSKWEDAAAKDKQRYHD 64 (73)
T ss_dssp CHHHHHHHHHHHHHTC-----TTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhh-----HhhHHHHHHHHHHHHHHHH
Confidence 4578889999999999 6777766666666655443
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.97 E-value=2.5e+02 Score=31.69 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHH
Q 047506 461 AQKDFSRSIRGIQKKCQKQMA 481 (947)
Q Consensus 461 ~~kd~sk~ik~i~kkc~kq~~ 481 (947)
.-.|+.+.|..|+++.+.|+.
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 333444444444444444443
No 92
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.55 E-value=2.3e+02 Score=28.44 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=16.2
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHhhhhh
Q 047506 539 KFKELERDRDVRLENLEALHVASMKKLSD 567 (947)
Q Consensus 539 ~f~el~~~~d~~lk~l~~~~la~r~k~~e 567 (947)
+++.|-.++..--..|....++.+.++++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666655
No 93
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.04 E-value=5.5e+02 Score=25.99 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047506 484 RHKQLEEKKDIDKRYEEQKAQLETKK 509 (947)
Q Consensus 484 ~~~q~eek~~~~~~~e~~ka~le~~~ 509 (947)
++.+..+..+.++.|+..-.+++...
T Consensus 132 ~~~~~~~l~KaK~~Y~~~~~e~e~a~ 157 (305)
T 2efl_A 132 IETCWKQLESSKRRFERDCKEADRAQ 157 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777666666544
No 94
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=24.91 E-value=6e+02 Score=27.06 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=4.4
Q ss_pred HHHHHHHHhHH
Q 047506 538 EKFKELERDRD 548 (947)
Q Consensus 538 k~f~el~~~~d 548 (947)
+.+.||++.++
T Consensus 134 rE~KELkk~q~ 144 (251)
T 1jad_A 134 SNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.47 E-value=1.9e+02 Score=33.89 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047506 464 DFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKK 509 (947)
Q Consensus 464 d~sk~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~le~~~ 509 (947)
|++|+-++|+--....|..|.++|.... +.++.|-+--.+|++++
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrI 119 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRI 119 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHH
Confidence 3344445555443333433333333333 44555544444555443
No 96
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=20.94 E-value=2.8e+02 Score=27.12 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=48.1
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHhhhhccCChhhhH
Q 047506 333 KPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESL 399 (947)
Q Consensus 333 KpEisKLceIL~LPenVK~mv~~fLEYv~~Nh~v~~ep~silqAF~islcW~aAsl~~~k~d~~~sl 399 (947)
..+|..+|.-|+||..|...|..++.=.+..+.+... -.++.-.+-.++|+.+-+.-.--+|-.
T Consensus 9 ~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~p~~l~di~ 72 (207)
T 1c9b_A 9 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGVPRTFKEIC 72 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3579999999999999999999988777766666544 356666777888888877655444433
No 97
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=20.80 E-value=1.9e+02 Score=31.63 Aligned_cols=85 Identities=7% Similarity=0.060 Sum_probs=58.9
Q ss_pred EEEeecCChhhHHHHHHHHHHhhcCCCcEEEEeCCC--CHHHHHHHHHhhhcCCCceEEEEecccCcCccCCCccceeEE
Q 047506 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNV--LDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79 (947)
Q Consensus 2 IFSQft~gst~mLDILEdfL~~rf~Gi~y~RLDGst--s~~eRq~aId~FN~ds~~fVFLLSTrAGG~GLNLtaAdtVIi 79 (947)
++||+- .+.--+-+++..+--|+++..=-|+. ..-.=...++.|.+|+...++++-...+|..
T Consensus 173 ivSqSG----~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~----------- 237 (334)
T 3mwd_B 173 YVSRSG----GMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTE----------- 237 (334)
T ss_dssp EEESCH----HHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSH-----------
T ss_pred EEeCch----HHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChH-----------
Confidence 577877 66666666776663466777777776 5555778999999999888888775555532
Q ss_pred ecCCCCCCchhHHhhhccCCCCcceEEEEEE
Q 047506 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRL 110 (947)
Q Consensus 80 fDpdWNPa~DlQAIdRaHRIGQkK~V~VyRL 110 (947)
+..++..+.+...+|+|.+|..
T Consensus 238 ---------e~~~~~~~r~~~~~KPVV~~ka 259 (334)
T 3mwd_B 238 ---------EYKICRGIKEGRLTKPIVCWCI 259 (334)
T ss_dssp ---------HHHHHHHHHTTSCCSCEEEEEE
T ss_pred ---------HHHHHHHHHhhcCCCCEEEEEc
Confidence 3445544444456799999964
No 98
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=20.32 E-value=1.9e+02 Score=36.23 Aligned_cols=31 Identities=13% Similarity=-0.133 Sum_probs=27.0
Q ss_pred eeEEecCCCCCCchhHHhhhccCCCCcceEE
Q 047506 76 AVIIFHSDWSPVNDLRALQRITLDPQLEQIK 106 (947)
Q Consensus 76 tVIifDpdWNPa~DlQAIdRaHRIGQkK~V~ 106 (947)
+||--...=+...|.|..||++|-|..=.-.
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 8888888889999999999999999976544
No 99
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=20.18 E-value=5.3e+02 Score=27.14 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=32.0
Q ss_pred chhhhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhhhh
Q 047506 526 MDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSD 567 (947)
Q Consensus 526 ~dklk~l~~e~~k~f~el~~~~d~~lk~l~~~~la~r~k~~e 567 (947)
...+.+-|.+....+++|..+++.+.+.|++..-..+.|+..
T Consensus 168 ~~~~~~~d~~~~~~i~~i~~~~~~~~~~~~~~~~~k~~~l~~ 209 (228)
T 3tbi_B 168 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 209 (228)
T ss_dssp TTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445566777888889999999999888888877777764
No 100
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=20.08 E-value=2e+02 Score=32.13 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 047506 467 RSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL-ETKK 509 (947)
Q Consensus 467 k~ik~i~kkc~kq~~kl~~~q~eek~~~~~~~e~~ka~l-e~~~ 509 (947)
++|..+. .|+.++.+|-.+-++|..+|+++|....+-| ++|.
T Consensus 53 ~rI~aLk-~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~ 95 (359)
T 3fs3_A 53 ETLKKLK-LYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRR 95 (359)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3454554 5667777777778888889999998776655 3443
Done!