BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047507
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P03680|DPOL_BPPH2 DNA polymerase OS=Bacillus phage phi29 GN=2 PE=1 SV=1
          Length = 575

 Score = 31.6 bits (70), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 97  LFDGDWVWDEKYPLY-QSKDCRF-LDEGFRCTENGRPDLFY 135
           +F+G +VWDE YPL+ Q   C F L EG+  T   +   FY
Sbjct: 270 VFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFY 310


>sp|P06950|DPOL_BPPZA DNA polymerase OS=Bacillus phage PZA GN=2 PE=3 SV=1
          Length = 572

 Score = 31.6 bits (70), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 97  LFDGDWVWDEKYPLY-QSKDCRF-LDEGFRCTENGRPDLFY 135
           +F+G +VWDE YPL+ Q   C F L EG+  T   +   FY
Sbjct: 267 VFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFY 307


>sp|Q9J555|A13_FOWPN Virion membrane protein A13 homolog OS=Fowlpox virus (strain
          NVSL) GN=FPV178 PE=2 SV=1
          Length = 71

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 32 VGVLGFFFVTVCVIVCFCYLDYRAVEKGYRVPGKSERFKWLK 73
          +G++  F +T   ++ FC L Y A ++   +P   +R K LK
Sbjct: 1  MGIIDTFVITAVTVIIFCLLIYAAYKRYKCIPSPDDRDKVLK 42


>sp|O19179|GUC2D_CANFA Retinal guanylyl cyclase 1 OS=Canis familiaris GN=GUCY2D PE=2 SV=1
          Length = 1109

 Score = 30.4 bits (67), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 91  NGSGCDLFDGDWVWDEKYP 109
           + S   LF+GDWVW +K+P
Sbjct: 552 DNSNIGLFEGDWVWLKKFP 570


>sp|Q54TH8|TCPG_DICDI T-complex protein 1 subunit gamma OS=Dictyostelium discoideum
           GN=cct3 PE=1 SV=1
          Length = 530

 Score = 30.0 bits (66), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 65  KSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCR 117
           KSE  +  ++ GA +V +T     S+ G+GC LF+   + DE +   +  DC+
Sbjct: 316 KSENNRIARISGATIVSRTDELQESDIGTGCGLFEIRKIGDEYFTFLE--DCK 366


>sp|Q6N9F2|PURL_RHOPA Phosphoribosylformylglycinamidine synthase 2 OS=Rhodopseudomonas
           palustris (strain ATCC BAA-98 / CGA009) GN=purL PE=3
           SV=1
          Length = 736

 Score = 30.0 bits (66), Expect = 7.7,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 51  LDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPL 110
           LD+  V  GY  P K  RF  +K  G +  D      + E G    L+D  WV  E+ P+
Sbjct: 338 LDFAIV--GYTTPTK--RFV-VKHGGQVKADLP----IKELGDEAPLYDRPWVESERLPV 388

Query: 111 YQSKDCRFLDEGFRCTEN--GRPDLFYTKWRWQ 141
             ++D           E     PDL   +W W+
Sbjct: 389 IHARDINAPMGAAEALEKLLATPDLCSKRWVWE 421


>sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegicus GN=Slc8a1 PE=2 SV=3
          Length = 971

 Score = 29.6 bits (65), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 27  LIEPYVGVLGFFFVTVCVIVCFC----YLDYRAVEKGYRVPGKSERFKWLKVDGALMVDK 82
           ++E + G+L FFF  +CV+  +      L Y+ V K YR  GK +R   ++ +G     K
Sbjct: 226 VVEVWEGLLTFFFFPICVVFAWVADRRLLFYKYVYKRYRA-GK-QRGMIIEHEGDRPASK 283

Query: 83  TRVE 86
           T +E
Sbjct: 284 TEIE 287


>sp|P70414|NAC1_MOUSE Sodium/calcium exchanger 1 OS=Mus musculus GN=Slc8a1 PE=1 SV=1
          Length = 970

 Score = 29.6 bits (65), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 27  LIEPYVGVLGFFFVTVCVIVCFC----YLDYRAVEKGYRVPGKSERFKWLKVDGALMVDK 82
           ++E + G+L FFF  +CV+  +      L Y+ V K YR  GK +R   ++ +G     K
Sbjct: 226 VVEVWEGLLTFFFFPICVVFAWVADRRLLFYKYVYKRYRA-GK-QRGMIIEHEGDRPASK 283

Query: 83  TRVE 86
           T +E
Sbjct: 284 TEIE 287


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.142    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,468,750
Number of Sequences: 539616
Number of extensions: 2891835
Number of successful extensions: 5838
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5835
Number of HSP's gapped (non-prelim): 9
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)