Query 047507
Match_columns 165
No_of_seqs 152 out of 554
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lom_A HIG1 domain family memb 28.9 17 0.00059 26.2 0.0 28 14-42 15-42 (93)
2 2lon_A HIG1 domain family memb 26.5 20 0.0007 26.2 0.0 40 1-43 1-44 (99)
3 1xrd_A LH-1, light-harvesting 15.8 88 0.003 20.6 2.2 21 27-47 7-29 (52)
4 1mwp_A Amyloid A4 protein; hep 14.6 60 0.0021 23.7 1.2 13 96-108 19-31 (96)
5 3bxl_B CAM, voltage-dependent 13.5 86 0.0029 18.0 1.4 16 12-27 5-20 (26)
6 1jwi_A Bitiscetin; domain swap 13.3 54 0.0019 22.1 0.7 11 138-148 110-120 (131)
7 3arc_L Photosystem II reaction 13.1 1.9E+02 0.0065 17.8 3.0 11 1-11 1-11 (37)
8 1mpz_A Obtustatin; disintegrin 11.8 1.4E+02 0.0047 18.1 2.1 13 115-127 9-21 (41)
9 2jwa_A Receptor tyrosine-prote 11.1 1.5E+02 0.0052 18.7 2.2 19 32-50 16-34 (44)
10 2ks1_B Epidermal growth factor 11.0 1.6E+02 0.0055 18.4 2.3 20 32-51 15-35 (44)
No 1
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=28.93 E-value=17 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=11.9
Q ss_pred hhHHHHHhhhhhccccchhhhHHHHHHHH
Q 047507 14 QSYDFLKKFKRLRLIEPYVGVLGFFFVTV 42 (165)
Q Consensus 14 ~~~~~~~~~kr~~~~~~~~~vl~ffl~~~ 42 (165)
+..|-|.+--+.+||-| +|++|+..+++
T Consensus 15 ~~~~K~~rk~ke~Plvp-Ig~~~~~~vl~ 42 (93)
T 2lom_A 15 DQGSKLIRKAKEAPFVP-VGIAGFAAIVA 42 (93)
Confidence 33443333333445555 45555444333
No 2
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=26.46 E-value=20 Score=26.16 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=17.1
Q ss_pred CCCCC----CccchhhhhhHHHHHhhhhhccccchhhhHHHHHHHHH
Q 047507 1 MSKNP----SQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVC 43 (165)
Q Consensus 1 ~~~~~----~~~~~~~~~~~~~~~~~kr~~~~~~~~~vl~ffl~~~~ 43 (165)
||.+. ++. +| .+..|-|.+--+.+||-| +|++|+..+++.
T Consensus 1 ms~~~~~~~~~~-~e-es~~~K~~rk~ke~Plvp-Ig~l~~~~vl~~ 44 (99)
T 2lon_A 1 MSANRRWWVPPD-DE-DCVSEKLLRKTRESPLVP-IGLGGCLVVAAY 44 (99)
Confidence 77773 232 22 233443333333455555 454444444333
No 3
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=15.81 E-value=88 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=12.0
Q ss_pred cccch--hhhHHHHHHHHHHHhh
Q 047507 27 LIEPY--VGVLGFFFVTVCVIVC 47 (165)
Q Consensus 27 ~~~~~--~~vl~ffl~~~~~~~c 47 (165)
.|.|. +.+++.|+++.+++.=
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IH 29 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIH 29 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHH
Confidence 35666 5566666666664433
No 4
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=14.60 E-value=60 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=10.3
Q ss_pred cceeccEEeCCCC
Q 047507 96 DLFDGDWVWDEKY 108 (165)
Q Consensus 96 D~f~G~WV~D~s~ 108 (165)
|+-+|+|+.|++.
T Consensus 19 ~~~~G~W~~D~~~ 31 (96)
T 1mwp_A 19 NVQNGKWDSDPSG 31 (96)
T ss_dssp CTTTCCEEECTTS
T ss_pred cccCCceeeCCCC
Confidence 4568999999864
No 5
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=13.47 E-value=86 Score=18.05 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.2
Q ss_pred hhhhHHHHHhhhhhcc
Q 047507 12 AFQSYDFLKKFKRLRL 27 (165)
Q Consensus 12 ~~~~~~~~~~~kr~~~ 27 (165)
+|-++|++|++|.+|.
T Consensus 5 a~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 5 AMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5669999999998774
No 6
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_A
Probab=13.33 E-value=54 Score=22.07 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=7.1
Q ss_pred eeeecCCCCCC
Q 047507 138 WRWQPKYCNLP 148 (165)
Q Consensus 138 WRWqP~~CdLP 148 (165)
..|....|+..
T Consensus 110 ~~w~~~~C~~~ 120 (131)
T 1jwi_A 110 RTWTDLPCGEK 120 (131)
T ss_dssp SSEEEECTTSC
T ss_pred CeEcCcCCCCC
Confidence 45777777653
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=13.13 E-value=1.9e+02 Score=17.81 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=7.4
Q ss_pred CCCCCCccchh
Q 047507 1 MSKNPSQDDNE 11 (165)
Q Consensus 1 ~~~~~~~~~~~ 11 (165)
|..||+.|..|
T Consensus 1 ~~~Npn~q~VE 11 (37)
T 3arc_L 1 MEPNPNRQPVE 11 (37)
T ss_dssp CCCCTTCCCBC
T ss_pred CCCCCCCCcce
Confidence 56677766666
No 8
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Probab=11.75 E-value=1.4e+02 Score=18.15 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=9.5
Q ss_pred CCcCccCCccccc
Q 047507 115 DCRFLDEGFRCTE 127 (165)
Q Consensus 115 ~CpfI~~~~nC~~ 127 (165)
+|.|...+.-|+.
T Consensus 9 ~C~f~~~g~~CR~ 21 (41)
T 1mpz_A 9 QCKLKPAGTTCWK 21 (41)
T ss_dssp TTBCSSSCCTTCC
T ss_pred CCcEeCCCCcccc
Confidence 5777777777775
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.09 E-value=1.5e+02 Score=18.66 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHhhhhc
Q 047507 32 VGVLGFFFVTVCVIVCFCY 50 (165)
Q Consensus 32 ~~vl~ffl~~~~~~~cff~ 50 (165)
-+|.|.+++.+..+..|+|
T Consensus 16 ~~vVGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 16 SAVVGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555533333333344444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=11.03 E-value=1.6e+02 Score=18.39 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHH-HHhhhhcc
Q 047507 32 VGVLGFFFVTVC-VIVCFCYL 51 (165)
Q Consensus 32 ~~vl~ffl~~~~-~~~cff~~ 51 (165)
.||.|-+++.++ ++..|||+
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHh
Confidence 566664444333 44445553
Done!