BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047508
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Monomeric Form
 pdb|3SIU|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Monomeric Form
 pdb|3SIV|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Dimeric Form
 pdb|3SIV|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Dimeric Form
 pdb|3SIV|H Chain H, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Dimeric Form
 pdb|3SIV|K Chain K, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
           Dimeric Form
          Length = 254

 Score = 27.3 bits (59), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 4   GTVGRSFREEIRNKIEKWQE 23
           G VG   ++EI  K +KWQE
Sbjct: 235 GKVGYELKDEIERKFDKWQE 254


>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
 pdb|2OZB|E Chain E, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
          Length = 260

 Score = 27.3 bits (59), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 4   GTVGRSFREEIRNKIEKWQE 23
           G VG   ++EI  K +KWQE
Sbjct: 241 GKVGYELKDEIERKFDKWQE 260


>pdb|2UUL|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers
          Length = 172

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 73  AEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAA 108
           A E   +NGL E Y  LG  GSS + V V +MK AA
Sbjct: 104 ALEDRCLNGLRETYSALGTPGSS-VAVGVGKMKEAA 138


>pdb|2UUN|D Chain D, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers
          Length = 172

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 73  AEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAA 108
           A E   +NGL E Y  LG  GSS + V V +MK AA
Sbjct: 104 ALEDRCLNGLRETYSALGTPGSS-VAVGVGKMKEAA 138


>pdb|2UUN|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUN|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers
          Length = 172

 Score = 26.2 bits (56), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 73  AEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAA 108
           A E   +NGL E Y  LG  GSS + V V +MK AA
Sbjct: 104 ALEDRCLNGLRETYSALGTPGSS-VAVGVGKMKEAA 138


>pdb|2UUL|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers.
 pdb|2UUL|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
           Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
           Shows Two Different Ways Of Energy Transfer Between Two
           Hexamers
          Length = 172

 Score = 26.2 bits (56), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 73  AEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAA 108
           A E   +NGL E Y  LG  GSS + V V +MK AA
Sbjct: 104 ALEDRCLNGLRETYSALGTPGSS-VAVGVGKMKEAA 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,831
Number of Sequences: 62578
Number of extensions: 140275
Number of successful extensions: 273
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)