BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047508
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U5C5|PRP31_XENLA U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis
GN=prpf31 PE=2 SV=1
Length = 498
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 97/171 (56%), Gaps = 11/171 (6%)
Query: 2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDM 61
P G +G +EEI K +KWQEP P K+ KPLP P +K +GGRR RKMKER +T++
Sbjct: 311 PEGKIGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEI 370
Query: 62 RKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH--- 118
RK ANR FG EE ++ LG G LG++GS +IR A+++K +
Sbjct: 371 RKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQ 430
Query: 119 ---YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
YG D +SG S +AFTP+Q LE+ PQA +++ +Q YFS
Sbjct: 431 SVVYGGKSTVRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480
>sp|Q6NVP6|PRP31_XENTR U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis
GN=prpf31 PE=2 SV=1
Length = 498
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 11/169 (6%)
Query: 4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
G VG +EEI K +KWQEP P K+ KPLP P +K +GGRR RKMKER +T++RK
Sbjct: 313 GKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 372
Query: 64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
ANR F EE ++ LG G LG++GS +IR A+++K +
Sbjct: 373 QANRMSFAEIEEDAYQEDLGFSLGHLGKSGSGRIRQAQVNEATKARISKTLQRTLQKQSV 432
Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
YG D +SG S +AFTP+Q LE+ PQA +++ +Q YFS
Sbjct: 433 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 480
>sp|Q8WWY3|PRP31_HUMAN U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens
GN=PRPF31 PE=1 SV=2
Length = 499
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 11/169 (6%)
Query: 4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
G VG ++EI K +KWQEP P K+ KPLP P +K +GGRR RKMKER +T++RK
Sbjct: 314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373
Query: 64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
ANR FG EE ++ LG G LG++GS ++R A+++K +
Sbjct: 374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433
Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
YG D +SG S +AFTP+Q LE+ PQA +++ +Q YFS
Sbjct: 434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481
>sp|Q8CCF0|PRP31_MOUSE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus
GN=Prpf31 PE=2 SV=3
Length = 499
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 11/169 (6%)
Query: 4 GTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRK 63
G VG ++EI K +KWQEP P K+ KPLP P +K +GGRR RKMKER +T++RK
Sbjct: 314 GKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRK 373
Query: 64 LANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEKH----- 118
ANR FG EE ++ LG G LG++GS ++R A+++K +
Sbjct: 374 QANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSV 433
Query: 119 -YGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFS 162
YG D +SG S +AFTP+Q LE+ PQA +++ +Q YFS
Sbjct: 434 VYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFS 481
>sp|Q7SXM7|PRP31_DANRE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio
GN=prpf31 PE=2 SV=1
Length = 508
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 3 SGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMR 62
G VG +EEI K +KWQEP P K+ KPLP P +K +GGRR RKMKER +T++R
Sbjct: 324 DGKVGYDLKEEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIR 383
Query: 63 KLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKEK----- 117
K ANR F E+ ++ LG G LG++GS ++R A+++K +
Sbjct: 384 KHANRMTFAEIEDDAYQEDLGFSLGQLGKSGSGRVRQAQVNDSTKARISKSLQRTLQKQS 443
Query: 118 -HYGSS----DATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGSQSTYFSQ 163
YG D +SG S +AFTP+Q LE+ PQA +++ +Q YFS
Sbjct: 444 MTYGGKSTVRDRSSGTSSSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSN 493
>sp|O42904|PRP31_SCHPO Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp31 PE=3 SV=1
Length = 518
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Query: 1 YPSGTVGRSFREEIRNKIEKWQEPSPAKRPK-PLPVPDSEPKKMKGGRRLRKMKERYAVT 59
YP G+ G S R+E+ KIEK EP P+++P LPVPD PK+ +GGRR+RKMKE+YAVT
Sbjct: 335 YPDGSFGISARKEVERKIEKLLEP-PSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVT 393
Query: 60 DMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRV--FVAQMKLAAKVAKKFKEK 117
++R+L NR FG E F EG GMLGQ G KIR ++ KL A+K + +
Sbjct: 394 ELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQ 453
Query: 118 HYGSSD--ATSGRKSRLAFTPVQWLELSIPQAHAQQ 151
+ A SG +S L+FTP+Q +EL P QQ
Sbjct: 454 SMAQKNPLAASGLQSSLSFTPIQGIELVNPLLQRQQ 489
>sp|P49704|PRP31_YEAST Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP31 PE=1 SV=2
Length = 494
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 3 SGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMR 62
+ + ++ E+ K K E K LP+P+ +PKK + GR+ RK KE++ ++ +R
Sbjct: 326 NTVLAHKWKAELSKKARKLSEAPSISETKALPIPEDQPKKKRAGRKFRKYKEKFRLSHVR 385
Query: 63 KLANRTQFGVAEESSFVNGLGEGYGMLGQAGSS 95
+L NR +FG +E + ++ GE G LG + +S
Sbjct: 386 QLQNRMEFG-KQEQTVLDSYGEEVG-LGMSNTS 416
>sp|Q66HA1|M3K11_RAT Mitogen-activated protein kinase kinase kinase 11 OS=Rattus
norvegicus GN=Map3k11 PE=1 SV=1
Length = 850
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKK 42
P G + R +RN+I+ W S RP PLP P P++
Sbjct: 763 PLGLISRPRPSPLRNRIDPWSFVSAGPRPSPLPSPQPAPRR 803
>sp|Q80XI6|M3K11_MOUSE Mitogen-activated protein kinase kinase kinase 11 OS=Mus musculus
GN=Map3k11 PE=1 SV=1
Length = 850
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKK 42
P G + R +R++I+ W S RP PLP P P++
Sbjct: 763 PLGLISRPRPSPLRSRIDPWSFVSAGPRPSPLPSPQPAPRR 803
>sp|Q16584|M3K11_HUMAN Mitogen-activated protein kinase kinase kinase 11 OS=Homo sapiens
GN=MAP3K11 PE=1 SV=1
Length = 847
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 2 PSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKK 42
P G + R +R++I+ W S RP PLP P P++
Sbjct: 760 PLGLISRPRPSPLRSRIDPWSFVSAGPRPSPLPSPQPAPRR 800
>sp|Q8BZ21|KAT6A_MOUSE Histone acetyltransferase KAT6A OS=Mus musculus GN=Kat6a PE=1 SV=2
Length = 2003
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 33 LPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRT------QFGVAEESS 77
LP P++ + GR+ RK +ER+ D + L + T Q+G EE S
Sbjct: 858 LPANSQPPRRGRCGRKNRKTQERFGDKDSKMLVDETLSASQEQYGDCEEKS 908
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,039,806
Number of Sequences: 539616
Number of extensions: 2451341
Number of successful extensions: 8590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8349
Number of HSP's gapped (non-prelim): 227
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)