Query 047508
Match_columns 165
No_of_seqs 115 out of 165
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 11:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2574 mRNA splicing factor P 100.0 7.9E-65 1.7E-69 453.7 10.1 164 1-165 315-482 (492)
2 PF09785 Prp31_C: Prp31 C term 100.0 4.3E-56 9.3E-61 343.4 7.5 120 26-145 1-124 (124)
3 PRK14552 C/D box methylation g 97.4 0.00011 2.4E-09 66.9 3.6 37 3-39 357-397 (414)
4 COG1498 SIK1 Protein implicate 97.3 0.00015 3.3E-09 65.9 3.3 57 7-66 339-395 (395)
5 PF13770 DUF4169: Domain of un 55.9 11 0.00023 25.7 2.2 25 47-72 7-31 (55)
6 PF12347 HJURP_C: Holliday jun 47.8 6.1 0.00013 27.3 0.0 28 30-58 6-33 (64)
7 COG4014 Uncharacterized protei 20.4 51 0.0011 24.9 0.9 15 47-61 74-88 (97)
8 CHL00193 ycf35 Ycf35; Provisio 19.0 1.6E+02 0.0034 23.0 3.4 36 46-81 82-117 (128)
9 PF08892 YqcI_YcgG: YqcI/YcgG 17.6 1.1E+02 0.0025 25.6 2.6 27 3-29 161-187 (219)
10 KOG0407 40S ribosomal protein 17.0 37 0.00081 26.7 -0.4 19 32-51 120-138 (139)
No 1
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=7.9e-65 Score=453.75 Aligned_cols=164 Identities=50% Similarity=0.795 Sum_probs=151.6
Q ss_pred CCCccccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhhcccccccccceecc
Q 047508 1 YPSGTVGRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVN 80 (165)
Q Consensus 1 ~~~G~~G~~~reeI~~ki~K~~EPPp~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~NRm~FG~~Ee~~~~~ 80 (165)
+++|.+|..|++||++||+|||||||++.+||||+|+|.|||||||||+|||||||+||||||+||||+||++|||+|++
T Consensus 315 ~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKkRgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~ 394 (492)
T KOG2574|consen 315 SPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKKRGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQE 394 (492)
T ss_pred CCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhhccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCcceehhHHHhhHHHHHHHHHhh----hhcCCCCCCccceeccccCCCcceeecCChhhhhhcCCCC
Q 047508 81 GLGEGYGMLGQAGSSKIRVFVAQMKLAAKVAKKFKE----KHYGSSDATSGRKSRLAFTPVQWLELSIPQAHAQQLGSGS 156 (165)
Q Consensus 81 ~~g~glGmlg~~gsGrir~~~~~~k~~~kl~K~~~~----~~~~~~~~~sG~aSSlafTP~QGiELvnP~a~~~~~~~~~ 156 (165)
++|+||||+|++|+||||.++++.++.++++|+|+. +++.++-.++||+||++|||+||||||||++ +++...++
T Consensus 395 ~~g~glGmlgksg~Grir~~~vd~~tkarisk~~~~~lq~~q~agg~ttsG~~ss~aftP~qglEivnp~~-~~~~~~e~ 473 (492)
T KOG2574|consen 395 DLGEGLGMLGKSGSGRIRGSSVDEKTKARISKKMKKQLQEQQQAGGFTTSGTASSVAFTPIQGLEIVNPQA-AEQQQPEE 473 (492)
T ss_pred ccccccccccccCCCceeecccccchhhhhhHHHHHHHHHHHhhCCccccccccccccCcccchhhcCHHH-HhhcCccc
Confidence 999999999999999999999876666666666653 4455667789999999999999999999998 67777889
Q ss_pred CCCCCCCCC
Q 047508 157 QSTYFSQKG 165 (165)
Q Consensus 157 ~~kyFs~~~ 165 (165)
+++|||++|
T Consensus 474 ~~~yFS~~g 482 (492)
T KOG2574|consen 474 NSKYFSSSG 482 (492)
T ss_pred ccceecCCC
Confidence 999999886
No 2
>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31. Prp31 is required for U4/U6*U5 tri-snRNP formation []. In humans this protein has been linked to autosomal dominant retinitis pigmentosa [, ].
Probab=100.00 E-value=4.3e-56 Score=343.41 Aligned_cols=120 Identities=53% Similarity=0.813 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhhcccccccccceeccCcccccccccCCCCcceehhHHHhh
Q 047508 26 PAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNGLGEGYGMLGQAGSSKIRVFVAQMK 105 (165)
Q Consensus 26 p~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~NRm~FG~~Ee~~~~~~~g~glGmlg~~gsGrir~~~~~~k 105 (165)
|++.+||||+|||.|+|||||||||||||+|+||||||+||||.||++|||++++|+|+||||||++++||||+.+++.+
T Consensus 1 P~k~~KaLP~Pdd~pkKKRGGrR~RK~KEr~~~TelRK~~NRm~FG~~eee~~~~~~g~glGmlg~~~~grir~~~~~~k 80 (124)
T PF09785_consen 1 PAKQKKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGEEEEEVYDFGEGIGLGMLGQSGSGRIRATQVDQK 80 (124)
T ss_pred CCCcCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccceeeeeeccCCCCceeeeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCC----CCCCccceeccccCCCcceeecCC
Q 047508 106 LAAKVAKKFKEKHYGS----SDATSGRKSRLAFTPVQWLELSIP 145 (165)
Q Consensus 106 ~~~kl~K~~~~~~~~~----~~~~sG~aSSlafTP~QGiELvnP 145 (165)
+.++++|+++.++..+ ++.++||+|||+|||+||||||||
T Consensus 81 ~~ak~sK~~~~~l~~~~~~~~~~~sG~~sSlaftp~qgiElvnP 124 (124)
T PF09785_consen 81 TKAKISKKMQKRLQSSGATTGGSTSGLASSLAFTPVQGIELVNP 124 (124)
T ss_pred hhhhhhHHHHHHHHhhccccCCcccchhhhhhcCCCccccccCc
Confidence 9999999988776443 345689999999999999999999
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=97.43 E-value=0.00011 Score=66.91 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=30.7
Q ss_pred CccccHHHHHHHHHHHH----HhcCCCCCCCCCCCCCCCCC
Q 047508 3 SGTVGRSFREEIRNKIE----KWQEPSPAKRPKPLPVPDSE 39 (165)
Q Consensus 3 ~G~~G~~~reeI~~ki~----K~~EPPp~k~~K~LP~P~d~ 39 (165)
++.+|..||++|+++|+ ||+||||.+..++=|.+...
T Consensus 357 ~~~~G~~l~~~l~~ri~~i~~k~~~Pp~~k~~~~~~~~~~~ 397 (414)
T PRK14552 357 GRYIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKK 397 (414)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccc
Confidence 34689999999999999 78999999999885554443
No 4
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00015 Score=65.86 Aligned_cols=57 Identities=42% Similarity=0.560 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHHhh
Q 047508 7 GRSFREEIRNKIEKWQEPSPAKRPKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKLAN 66 (165)
Q Consensus 7 G~~~reeI~~ki~K~~EPPp~k~~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~~N 66 (165)
|..|+++|+++|+++.++|+.+.+|++|.| + +++|.||+.|++|+++..++.|..+|
T Consensus 339 ~~~lr~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r~~~~~~~~~~~~~~~~~~~ 395 (395)
T COG1498 339 GISLREELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGRYRRKKKEKKAKSERRGLQN 395 (395)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCcccccc-c--cccCccccccccccccchhhhhhccC
Confidence 479999999999999999999999999999 5 89999999999999999999988765
No 5
>PF13770 DUF4169: Domain of unknown function (DUF4169)
Probab=55.86 E-value=11 Score=25.73 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.9
Q ss_pred HHHHHhHHHhhhhHHHHHhhcccccc
Q 047508 47 RRLRKMKERYAVTDMRKLANRTQFGV 72 (165)
Q Consensus 47 rR~RK~KEr~~~telRK~~NRm~FG~ 72 (165)
+++||.|++-. .+-...+||+.||-
T Consensus 7 n~~RK~kaR~~-~~~~A~~NR~~fGR 31 (55)
T PF13770_consen 7 NRARKAKARAE-KEAQADENRAKFGR 31 (55)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 57888888754 46678899999996
No 6
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=47.81 E-value=6.1 Score=27.34 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccccchhHHHHHhHHHhhh
Q 047508 30 PKPLPVPDSEPKKMKGGRRLRKMKERYAV 58 (165)
Q Consensus 30 ~K~LP~P~d~~kkkRGGrR~RK~KEr~~~ 58 (165)
.+..|.||..+- =|+.-|||+++|+|..
T Consensus 6 ~~~sp~p~~~~~-p~~e~kY~eI~eeFD~ 33 (64)
T PF12347_consen 6 GCDSPEPDIEPS-PRTENKYREINEEFDK 33 (64)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCcCCC-CchhhHHHHHHHHHHH
Confidence 477889998776 7889999999999975
No 7
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.44 E-value=51 Score=24.87 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=11.7
Q ss_pred HHHHHhHHHhhhhHH
Q 047508 47 RRLRKMKERYAVTDM 61 (165)
Q Consensus 47 rR~RK~KEr~~~tel 61 (165)
.|+||+||-|+.-+|
T Consensus 74 erirk~kE~~e~vDl 88 (97)
T COG4014 74 ERIRKEKEEFELVDL 88 (97)
T ss_pred HHHHHHHHhhhhccc
Confidence 589999998876553
No 8
>CHL00193 ycf35 Ycf35; Provisional
Probab=18.99 E-value=1.6e+02 Score=22.99 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=31.4
Q ss_pred hHHHHHhHHHhhhhHHHHHhhcccccccccceeccC
Q 047508 46 GRRLRKMKERYAVTDMRKLANRTQFGVAEESSFVNG 81 (165)
Q Consensus 46 GrR~RK~KEr~~~telRK~~NRm~FG~~Ee~~~~~~ 81 (165)
=+++.|+-.+|+...+...+++-.|-++||....+|
T Consensus 82 e~fl~kl~Q~YA~~~vl~~~~~~Gf~v~e~~~~~dG 117 (128)
T CHL00193 82 ENFLDKLNQQYAYNSIIKESKKIGFEPIEYVNNKDG 117 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 467899999999999999999999999888776543
No 9
>PF08892 YqcI_YcgG: YqcI/YcgG family; InterPro: IPR014988 This group of proteins are functionally uncharacterised. They include YqcI and YcgG from Bacillus subtilis. The alignment contains a conserved FPC motif at the N terminus and CPF at the C terminus.
Probab=17.57 E-value=1.1e+02 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=21.5
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCCC
Q 047508 3 SGTVGRSFREEIRNKIEKWQEPSPAKR 29 (165)
Q Consensus 3 ~G~~G~~~reeI~~ki~K~~EPPp~k~ 29 (165)
++..|.++|+.|.+++++++.-|+.+.
T Consensus 161 ~~~~~~~~r~~IR~R~~~ydg~~~~p~ 187 (219)
T PF08892_consen 161 DGRKGEKAREKIRKRDEAYDGIPIHPD 187 (219)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 455699999999999999999444443
No 10
>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=17.02 E-value=37 Score=26.68 Aligned_cols=19 Identities=42% Similarity=0.812 Sum_probs=13.4
Q ss_pred CCCCCCCCccccchhHHHHH
Q 047508 32 PLPVPDSEPKKMKGGRRLRK 51 (165)
Q Consensus 32 ~LP~P~d~~kkkRGGrR~RK 51 (165)
.-|+|.|..+ |+||||=|+
T Consensus 120 vtpip~d~tr-rkggrrgrr 138 (139)
T KOG0407|consen 120 VTPIPSDSTR-RKGGRRGRR 138 (139)
T ss_pred cccCCccchh-hccCccccc
Confidence 3588888654 568888765
Done!