Query 047508
Match_columns 165
No_of_seqs 115 out of 165
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_t 60S acidic ribosomal pr 24.5 16 0.00054 26.8 0.0 11 76-86 98-108 (110)
2 3iz5_v 60S acidic ribosomal pr 23.1 17 0.0006 26.8 0.0 9 78-86 103-111 (113)
3 3izc_t 60S acidic ribosomal pr 20.5 21 0.00073 25.9 0.0 9 78-86 96-104 (106)
4 3izc_v 60S acidic ribosomal pr 18.5 25 0.00085 25.6 0.0 9 78-86 96-104 (106)
5 4fyl_A Ribosome hibernation pr 13.8 1.1E+02 0.0038 20.8 2.4 18 5-22 11-28 (95)
6 2qq2_A Cytosolic acyl coenzyme 12.7 1.2E+02 0.0043 22.7 2.6 29 30-58 154-182 (193)
7 2bzw_B BCL2-antagonist of cell 12.0 1.1E+02 0.0036 17.3 1.5 18 42-59 8-25 (27)
8 2ywq_A Protein Y, ribosomal su 11.7 1.4E+02 0.0047 20.5 2.4 19 5-23 12-30 (105)
9 3v26_X ORF3, ORF95, probable s 11.6 1.4E+02 0.0048 20.7 2.4 19 5-23 11-29 (101)
10 1lyp_A CAP18; lipopolysacchari 11.4 1.7E+02 0.0057 16.8 2.2 14 8-21 7-20 (32)
No 1
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=24.47 E-value=16 Score=26.84 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred ceeccCccccc
Q 047508 76 SSFVNGLGEGY 86 (165)
Q Consensus 76 ~~~~~~~g~gl 86 (165)
+.-|+|+||||
T Consensus 98 EEsddDmGfgL 108 (110)
T 3iz5_t 98 EESDDDMGFSL 108 (110)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 33466888875
No 2
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=23.09 E-value=17 Score=26.75 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred eccCccccc
Q 047508 78 FVNGLGEGY 86 (165)
Q Consensus 78 ~~~~~g~gl 86 (165)
-|+|+||||
T Consensus 103 sDdDmGFgL 111 (113)
T 3iz5_v 103 SDDDMGFSL 111 (113)
T ss_dssp ---------
T ss_pred cccccccCc
Confidence 456888876
No 3
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=20.51 E-value=21 Score=25.94 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred eccCccccc
Q 047508 78 FVNGLGEGY 86 (165)
Q Consensus 78 ~~~~~g~gl 86 (165)
-|+|+||||
T Consensus 96 sddDmGfgL 104 (106)
T 3izc_t 96 SDDDMGFGL 104 (106)
T ss_dssp ---------
T ss_pred cccccccCc
Confidence 356788875
No 4
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=18.51 E-value=25 Score=25.56 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred eccCccccc
Q 047508 78 FVNGLGEGY 86 (165)
Q Consensus 78 ~~~~~g~gl 86 (165)
-|+|+||||
T Consensus 96 sdddmGfgL 104 (106)
T 3izc_v 96 SDDDMGFGL 104 (106)
T ss_dssp ---------
T ss_pred cccccCCCC
Confidence 356788775
No 5
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=13.79 E-value=1.1e+02 Score=20.85 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=15.3
Q ss_pred cccHHHHHHHHHHHHHhc
Q 047508 5 TVGRSFREEIRNKIEKWQ 22 (165)
Q Consensus 5 ~~G~~~reeI~~ki~K~~ 22 (165)
.++..|++.|++||+||.
T Consensus 11 ~vt~al~~~v~~Kl~kl~ 28 (95)
T 4fyl_A 11 DLTDSMQDYVHSKFDKLE 28 (95)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 567889999999999974
No 6
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal domain, thioesterase, structural genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens}
Probab=12.67 E-value=1.2e+02 Score=22.69 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=19.5
Q ss_pred CCCCCCCCCCccccchhHHHHHhHHHhhh
Q 047508 30 PKPLPVPDSEPKKMKGGRRLRKMKERYAV 58 (165)
Q Consensus 30 ~K~LP~P~d~~kkkRGGrR~RK~KEr~~~ 58 (165)
-||.|+|++-|.-----+++...++++..
T Consensus 154 ~kp~piP~~~~~t~~e~~~~~~a~~r~~~ 182 (193)
T 2qq2_A 154 GRSLPVPQLVPETEDEKKRFEEGKGRYLQ 182 (193)
T ss_dssp CCBCCCCCCCCCSHHHHHHHHHHHHHHHH
T ss_pred CCeecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57889999887765555566655555544
No 7
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=12.00 E-value=1.1e+02 Score=17.25 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=13.9
Q ss_pred ccchhHHHHHhHHHhhhh
Q 047508 42 KMKGGRRLRKMKERYAVT 59 (165)
Q Consensus 42 kkRGGrR~RK~KEr~~~t 59 (165)
-+|=||-+|+|-+.|..+
T Consensus 8 A~rYGReLRRMSDEF~~s 25 (27)
T 2bzw_B 8 AQRYGRELRRMSDEFEGS 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHhHHHHhh
Confidence 467799999998887653
No 8
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=11.68 E-value=1.4e+02 Score=20.49 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=15.1
Q ss_pred cccHHHHHHHHHHHHHhcC
Q 047508 5 TVGRSFREEIRNKIEKWQE 23 (165)
Q Consensus 5 ~~G~~~reeI~~ki~K~~E 23 (165)
.+...|++.|++||+||.-
T Consensus 12 ~~t~al~~~v~~kl~kL~r 30 (105)
T 2ywq_A 12 EITDAIRDYVEKKLARLDR 30 (105)
T ss_dssp CCCHHHHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4577899999999988753
No 9
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=11.57 E-value=1.4e+02 Score=20.68 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.4
Q ss_pred cccHHHHHHHHHHHHHhcC
Q 047508 5 TVGRSFREEIRNKIEKWQE 23 (165)
Q Consensus 5 ~~G~~~reeI~~ki~K~~E 23 (165)
.+...|++.|++||+||.-
T Consensus 11 e~t~alr~~ve~Kl~kL~k 29 (101)
T 3v26_X 11 EITEALREFVTAKFAKLEQ 29 (101)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 4678899999999998753
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=11.43 E-value=1.7e+02 Score=16.82 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHh
Q 047508 8 RSFREEIRNKIEKW 21 (165)
Q Consensus 8 ~~~reeI~~ki~K~ 21 (165)
+++|..|.+++.|+
T Consensus 7 rkfrnkikeklkki 20 (32)
T 1lyp_A 7 RKFRNKIKEKLKKI 20 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777777664
Done!