Query 047508
Match_columns 165
No_of_seqs 115 out of 165
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 20:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bdfa2 d.181.1.1 (A:53-178) R 15.9 25 0.0018 24.3 1.2 17 128-146 59-75 (126)
2 d2ywqa1 d.204.1.1 (A:1-95) Rib 12.4 63 0.0046 20.0 2.5 19 4-22 11-29 (95)
3 d1smya2 d.181.1.1 (A:50-172) R 9.2 58 0.0042 22.0 1.4 17 128-146 61-77 (123)
4 d1imua_ d.204.1.1 (A:) Ribosom 9.1 1.1E+02 0.0081 19.3 2.9 21 3-23 9-29 (107)
5 d1cnt1_ a.26.1.1 (1:) Ciliary 8.6 1.9E+02 0.014 20.6 4.3 46 14-59 113-162 (177)
6 d2bgxa2 d.118.1.1 (A:7-179) Pr 7.9 53 0.0039 23.3 0.8 8 139-146 96-103 (173)
7 d1r7aa1 b.71.1.1 (A:435-504) S 7.8 49 0.0035 20.8 0.4 20 127-146 24-43 (70)
8 d1l4sa_ d.204.1.1 (A:) Ribosom 7.7 1E+02 0.0075 19.7 2.2 21 3-23 8-28 (112)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 7.4 87 0.0063 18.0 1.5 22 46-68 3-24 (68)
10 d1y7ua1 d.38.1.1 (A:8-171) Acy 7.0 1.2E+02 0.0086 20.9 2.3 35 30-64 119-153 (164)
No 1
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=15.95 E-value=25 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.5
Q ss_pred ceeccccCCCcceeecCCh
Q 047508 128 RKSRLAFTPVQWLELSIPQ 146 (165)
Q Consensus 128 ~aSSlafTP~QGiELvnP~ 146 (165)
+|+.+.+. .++|++||+
T Consensus 59 tA~di~~~--~~veIvNpd 75 (126)
T d1bdfa2 59 TAADITHD--GDVEIVKPQ 75 (126)
T ss_dssp EGGGBCCC--SSCEESCTT
T ss_pred EEecccCC--CCEEEeCCc
Confidence 45566554 699999996
No 2
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=12.36 E-value=63 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=15.5
Q ss_pred ccccHHHHHHHHHHHHHhc
Q 047508 4 GTVGRSFREEIRNKIEKWQ 22 (165)
Q Consensus 4 G~~G~~~reeI~~ki~K~~ 22 (165)
-.++..+++.|++||+||.
T Consensus 11 ~~lt~al~~~ve~kl~kL~ 29 (95)
T d2ywqa1 11 LEITDAIRDYVEKKLARLD 29 (95)
T ss_dssp SCCCHHHHHHHHHHHHGGG
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 3567889999999998875
No 3
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=9.17 E-value=58 Score=22.02 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=11.8
Q ss_pred ceeccccCCCcceeecCCh
Q 047508 128 RKSRLAFTPVQWLELSIPQ 146 (165)
Q Consensus 128 ~aSSlafTP~QGiELvnP~ 146 (165)
+|+.+.. -.++|+|||+
T Consensus 61 tA~Di~~--~~~veIvNpd 77 (123)
T d1smya2 61 KARDFLP--VADVEIMNPD 77 (123)
T ss_dssp BGGGSCC--CTTEEESCTT
T ss_pred EeeeecC--CCcEEEECCc
Confidence 3445543 3699999996
No 4
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=9.13 E-value=1.1e+02 Score=19.27 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.2
Q ss_pred CccccHHHHHHHHHHHHHhcC
Q 047508 3 SGTVGRSFREEIRNKIEKWQE 23 (165)
Q Consensus 3 ~G~~G~~~reeI~~ki~K~~E 23 (165)
.-.++..+++.|+++|+|+..
T Consensus 9 ~~~lt~al~~~i~~kl~kl~k 29 (107)
T d1imua_ 9 QMDITPAIREHLEERLAKLGK 29 (107)
T ss_dssp SSCCCHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHHHHHHHHHh
Confidence 446788999999999999865
No 5
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=1.9e+02 Score=20.62 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCC----CCCccccchhHHHHHhHHHhhhh
Q 047508 14 IRNKIEKWQEPSPAKRPKPLPVP----DSEPKKMKGGRRLRKMKERYAVT 59 (165)
Q Consensus 14 I~~ki~K~~EPPp~k~~K~LP~P----~d~~kkkRGGrR~RK~KEr~~~t 59 (165)
|..-+..+.-++|+...-+.|+| ..-.+|-||++-.|.++|...-|
T Consensus 113 i~~im~~Lg~~~p~e~~~~~~~~~~~~~~F~kK~~G~~Vlrey~~w~~rt 162 (177)
T d1cnt1_ 113 IEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRS 162 (177)
T ss_dssp HHHHHHHTTCCCCCCSSSCC--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCChhHHHHHhcCcchHhHHHHHHHHH
Confidence 34445555545555555555443 24678999999999999987655
No 6
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.87 E-value=53 Score=23.34 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=7.2
Q ss_pred ceeecCCh
Q 047508 139 WLELSIPQ 146 (165)
Q Consensus 139 GiELvnP~ 146 (165)
|||||||.
T Consensus 96 GIEl~n~g 103 (173)
T d2bgxa2 96 GIELENRG 103 (173)
T ss_dssp EEEECCCC
T ss_pred eeeeEeec
Confidence 99999984
No 7
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=7.75 E-value=49 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.7
Q ss_pred cceeccccCCCcceeecCCh
Q 047508 127 GRKSRLAFTPVQWLELSIPQ 146 (165)
Q Consensus 127 G~aSSlafTP~QGiELvnP~ 146 (165)
+.+.+|.|+|-.||-.-||+
T Consensus 24 ~s~AtLTFeP~~GlGv~Nt~ 43 (70)
T d1r7aa1 24 TSQATLTFEPKRGLGVDNTT 43 (70)
T ss_dssp SCEEEEEECGGGSCSTTCCS
T ss_pred cceEEEEEcCCccccccCCc
Confidence 44568999999999988985
No 8
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=7.71 E-value=1e+02 Score=19.68 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=16.9
Q ss_pred CccccHHHHHHHHHHHHHhcC
Q 047508 3 SGTVGRSFREEIRNKIEKWQE 23 (165)
Q Consensus 3 ~G~~G~~~reeI~~ki~K~~E 23 (165)
+-.++..+++.|++||+|+.-
T Consensus 8 ~~~lt~al~~~i~~kl~kl~k 28 (112)
T d1l4sa_ 8 QMEITPAIRQHVADRLAKLEK 28 (112)
T ss_dssp SSCCCHHHHHHHHHHHHHCTT
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 345788999999999999753
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=7.39 E-value=87 Score=18.04 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=16.4
Q ss_pred hHHHHHhHHHhhhhHHHHHhhcc
Q 047508 46 GRRLRKMKERYAVTDMRKLANRT 68 (165)
Q Consensus 46 GrR~RK~KEr~~~telRK~~NRm 68 (165)
|.|+|.+.++.+|| ...++.++
T Consensus 3 g~~ik~~R~~~glt-q~~la~~~ 24 (68)
T d1b0na2 3 GQRIKQYRKEKGYS-LSELAEKA 24 (68)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHH
Confidence 67888888888887 45666665
No 10
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=6.96 E-value=1.2e+02 Score=20.88 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=18.5
Q ss_pred CCCCCCCCCCccccchhHHHHHhHHHhhhhHHHHH
Q 047508 30 PKPLPVPDSEPKKMKGGRRLRKMKERYAVTDMRKL 64 (165)
Q Consensus 30 ~K~LP~P~d~~kkkRGGrR~RK~KEr~~~telRK~ 64 (165)
-+|.|+|.-.|.-----+++...++++..-.+|++
T Consensus 119 g~p~~vp~l~p~t~eE~~~~~~a~~r~~~R~~r~~ 153 (164)
T d1y7ua1 119 NNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKA 153 (164)
T ss_dssp SCBCCCCEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667765444444444555555555555444443
Done!