Query 047511
Match_columns 471
No_of_seqs 353 out of 2995
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.9E-60 1.1E-64 502.5 19.4 448 1-468 189-731 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.1E-48 9E-53 431.6 23.8 421 1-470 217-741 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.9E-33 1.1E-37 267.0 2.1 213 1-219 29-285 (287)
4 KOG0617 Ras suppressor protein 99.6 4.2E-18 9.2E-23 142.0 -4.2 161 292-470 28-189 (264)
5 PLN00113 leucine-rich repeat r 99.5 1.5E-14 3.2E-19 161.7 7.1 176 277-467 160-345 (968)
6 KOG0444 Cytoskeletal regulator 99.5 9.4E-16 2E-20 151.1 -2.5 182 271-469 68-260 (1255)
7 PLN00113 leucine-rich repeat r 99.5 2.3E-14 5.1E-19 160.1 7.4 177 276-467 183-369 (968)
8 KOG0444 Cytoskeletal regulator 99.4 1.9E-14 4.1E-19 142.0 -2.6 170 283-470 208-378 (1255)
9 KOG0472 Leucine-rich repeat pr 99.3 3.2E-14 6.8E-19 133.8 -5.2 162 288-470 128-291 (565)
10 KOG0617 Ras suppressor protein 99.2 3.6E-13 7.8E-18 112.7 -3.8 137 287-432 46-184 (264)
11 PLN03210 Resistant to P. syrin 99.2 9.9E-11 2.2E-15 132.1 10.8 88 289-378 626-714 (1153)
12 KOG4194 Membrane glycoprotein 99.0 1.2E-10 2.7E-15 114.7 3.7 162 291-470 167-333 (873)
13 KOG0472 Leucine-rich repeat pr 99.0 6.6E-12 1.4E-16 118.4 -6.3 160 290-470 84-244 (565)
14 KOG4194 Membrane glycoprotein 99.0 8E-11 1.7E-15 116.0 -0.9 164 291-469 263-431 (873)
15 KOG0532 Leucine-rich repeat (L 98.9 5.1E-11 1.1E-15 117.1 -5.2 133 288-432 112-245 (722)
16 PRK04841 transcriptional regul 98.8 5.9E-08 1.3E-12 108.1 15.7 182 60-265 106-331 (903)
17 KOG0618 Serine/threonine phosp 98.8 4.8E-10 1E-14 116.2 -1.3 157 289-465 302-487 (1081)
18 KOG4237 Extracellular matrix p 98.8 8.2E-10 1.8E-14 104.3 0.1 65 290-354 84-150 (498)
19 KOG0618 Serine/threonine phosp 98.8 3.4E-10 7.4E-15 117.2 -3.1 161 296-470 240-423 (1081)
20 PRK15370 E3 ubiquitin-protein 98.7 1.8E-08 3.8E-13 107.4 6.9 142 298-470 242-383 (754)
21 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.4E-14 105.4 -2.9 161 288-470 89-250 (722)
22 PF14580 LRR_9: Leucine-rich r 98.6 1.5E-08 3.2E-13 88.4 1.7 104 294-402 16-122 (175)
23 PRK15370 E3 ubiquitin-protein 98.6 9.2E-08 2E-12 101.9 7.2 143 297-470 220-362 (754)
24 cd00116 LRR_RI Leucine-rich re 98.6 2.8E-08 6E-13 96.7 3.0 162 297-468 108-292 (319)
25 cd00116 LRR_RI Leucine-rich re 98.6 3.2E-08 6.9E-13 96.3 2.9 172 290-467 74-263 (319)
26 COG4886 Leucine-rich repeat (L 98.5 4.4E-08 9.5E-13 98.4 3.2 160 289-469 131-292 (394)
27 PRK15387 E3 ubiquitin-protein 98.4 3.2E-07 6.9E-12 97.5 6.7 151 296-470 241-398 (788)
28 PRK15387 E3 ubiquitin-protein 98.4 3.3E-07 7.2E-12 97.4 6.1 24 445-468 436-459 (788)
29 PLN03150 hypothetical protein; 98.4 5.4E-07 1.2E-11 95.3 7.2 81 299-379 420-501 (623)
30 KOG4658 Apoptotic ATPase [Sign 98.4 3E-07 6.5E-12 99.6 5.1 129 297-430 545-677 (889)
31 KOG1259 Nischarin, modulator o 98.4 5.7E-08 1.2E-12 88.9 -1.0 132 297-470 284-415 (490)
32 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.6E-12 65.3 3.3 57 297-354 1-59 (61)
33 PLN03150 hypothetical protein; 98.3 5.3E-07 1.2E-11 95.4 5.2 87 288-374 433-521 (623)
34 COG4886 Leucine-rich repeat (L 98.3 2.4E-07 5.2E-12 93.0 1.8 159 291-470 110-271 (394)
35 KOG4237 Extracellular matrix p 98.3 1.1E-07 2.4E-12 90.2 -1.2 90 285-376 57-148 (498)
36 PF14580 LRR_9: Leucine-rich r 98.2 9.9E-07 2.1E-11 76.9 4.0 87 291-380 35-125 (175)
37 TIGR03015 pepcterm_ATPase puta 98.2 6.1E-06 1.3E-10 78.2 9.5 88 71-158 121-242 (269)
38 PF12799 LRR_4: Leucine Rich r 98.0 9.3E-06 2E-10 53.4 3.6 40 297-337 1-40 (44)
39 PRK15386 type III secretion pr 97.9 1.9E-05 4.1E-10 77.5 6.3 68 294-366 49-116 (426)
40 KOG3665 ZYG-1-like serine/thre 97.8 8.7E-06 1.9E-10 86.2 2.2 132 297-432 122-261 (699)
41 PF12799 LRR_4: Leucine Rich r 97.8 3.2E-05 7E-10 50.8 3.6 40 320-361 1-40 (44)
42 PF13855 LRR_8: Leucine rich r 97.8 1.3E-05 2.7E-10 57.2 1.7 56 320-377 1-58 (61)
43 COG3903 Predicted ATPase [Gene 97.7 2.7E-05 5.8E-10 75.2 4.0 246 1-265 24-313 (414)
44 KOG3207 Beta-tubulin folding c 97.7 5.9E-06 1.3E-10 79.7 -0.9 13 70-82 15-27 (505)
45 TIGR00635 ruvB Holliday juncti 97.6 0.00044 9.5E-09 66.8 10.0 165 63-246 98-290 (305)
46 KOG3207 Beta-tubulin folding c 97.5 2.9E-05 6.3E-10 75.0 1.4 11 421-431 301-311 (505)
47 KOG1259 Nischarin, modulator o 97.5 1.8E-05 3.8E-10 72.9 -0.2 85 290-378 300-384 (490)
48 COG2909 MalT ATP-dependent tra 97.5 0.0016 3.6E-08 68.4 13.8 185 57-265 111-337 (894)
49 PRK00411 cdc6 cell division co 97.5 0.0019 4E-08 64.9 14.1 231 1-245 65-358 (394)
50 PRK00080 ruvB Holliday junctio 97.5 0.00052 1.1E-08 67.0 9.7 120 110-246 182-311 (328)
51 PF13173 AAA_14: AAA domain 97.5 7.4E-05 1.6E-09 62.1 3.3 50 65-116 53-102 (128)
52 KOG0531 Protein phosphatase 1, 97.4 2.3E-05 4.9E-10 79.2 -0.9 152 293-468 114-269 (414)
53 KOG4579 Leucine-rich repeat (L 97.2 5.9E-05 1.3E-09 61.7 -0.6 79 295-375 51-130 (177)
54 KOG1909 Ran GTPase-activating 97.2 0.00036 7.9E-09 65.8 4.2 87 294-380 27-132 (382)
55 KOG0531 Protein phosphatase 1, 97.2 6E-05 1.3E-09 76.2 -1.4 154 291-469 89-247 (414)
56 KOG1909 Ran GTPase-activating 97.1 0.00014 3.1E-09 68.5 0.8 38 293-330 88-130 (382)
57 PF01637 Arch_ATPase: Archaeal 97.0 0.0012 2.6E-08 60.7 6.0 41 110-153 193-233 (234)
58 PRK06893 DNA replication initi 97.0 0.0015 3.2E-08 60.3 5.9 18 1-18 49-66 (229)
59 KOG1859 Leucine-rich repeat pr 96.9 4.2E-05 9.1E-10 78.3 -4.8 83 292-379 182-265 (1096)
60 PRK13342 recombination factor 96.9 0.0028 6.1E-08 63.9 8.2 81 71-155 90-197 (413)
61 PF05729 NACHT: NACHT domain 96.9 0.00085 1.8E-08 58.1 3.8 19 1-19 10-28 (166)
62 KOG2120 SCF ubiquitin ligase, 96.9 3.8E-05 8.2E-10 70.7 -5.0 161 293-465 206-374 (419)
63 PF13401 AAA_22: AAA domain; P 96.8 0.0016 3.4E-08 54.2 4.1 102 1-109 14-122 (131)
64 TIGR02928 orc1/cdc6 family rep 96.7 0.076 1.6E-06 52.7 16.3 66 175-245 280-350 (365)
65 KOG1859 Leucine-rich repeat pr 96.7 4.9E-05 1.1E-09 77.9 -6.5 125 297-432 164-290 (1096)
66 COG2256 MGS1 ATPase related to 96.6 0.017 3.7E-07 56.1 10.4 79 1-109 58-137 (436)
67 cd00009 AAA The AAA+ (ATPases 96.4 0.004 8.7E-08 52.3 4.5 16 1-16 29-44 (151)
68 KOG4579 Leucine-rich repeat (L 96.4 0.00035 7.6E-09 57.2 -2.2 73 289-363 68-141 (177)
69 PRK15386 type III secretion pr 96.4 0.0045 9.7E-08 61.1 4.9 57 316-378 48-104 (426)
70 KOG2120 SCF ubiquitin ligase, 96.3 0.00041 8.8E-09 64.1 -2.3 135 293-431 230-373 (419)
71 PF00560 LRR_1: Leucine Rich R 96.1 0.0021 4.7E-08 35.1 0.5 18 299-316 2-19 (22)
72 COG5238 RNA1 Ran GTPase-activa 96.0 0.011 2.3E-07 54.3 5.2 38 342-379 90-131 (388)
73 PRK14963 DNA polymerase III su 96.0 0.012 2.6E-07 60.5 6.0 39 71-109 114-152 (504)
74 KOG3665 ZYG-1-like serine/thre 95.9 0.0044 9.6E-08 66.0 2.6 59 294-354 170-230 (699)
75 KOG2739 Leucine-rich acidic nu 95.9 0.0039 8.4E-08 56.8 1.8 85 292-379 60-154 (260)
76 PRK06645 DNA polymerase III su 95.9 0.023 4.9E-07 58.4 7.4 39 71-109 126-164 (507)
77 PRK09376 rho transcription ter 95.8 0.0045 9.8E-08 60.5 2.1 30 1-30 179-209 (416)
78 PRK04195 replication factor C 95.7 0.33 7.2E-06 50.1 15.1 15 1-15 49-63 (482)
79 KOG1644 U2-associated snRNP A' 95.5 0.009 2E-07 52.4 2.5 102 297-402 42-149 (233)
80 PRK13341 recombination factor 95.5 0.028 6.1E-07 60.3 6.5 19 1-19 62-80 (725)
81 PF00560 LRR_1: Leucine Rich R 95.4 0.0072 1.6E-07 33.0 1.0 20 322-342 2-21 (22)
82 PRK08116 hypothetical protein; 95.3 0.015 3.3E-07 54.8 3.5 18 1-18 124-141 (268)
83 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.048 1E-06 50.0 6.3 17 1-17 48-64 (226)
84 KOG2982 Uncharacterized conser 95.1 0.014 3.1E-07 54.2 2.5 62 293-354 93-156 (418)
85 PLN03025 replication factor C 95.1 0.088 1.9E-06 51.2 8.1 38 72-109 98-135 (319)
86 KOG2123 Uncharacterized conser 95.0 0.0017 3.7E-08 59.5 -3.6 58 295-354 39-98 (388)
87 PF13504 LRR_7: Leucine rich r 95.0 0.01 2.2E-07 30.1 0.6 17 454-470 1-17 (17)
88 cd01128 rho_factor Transcripti 94.9 0.0065 1.4E-07 56.5 -0.1 29 1-29 26-55 (249)
89 PRK12323 DNA polymerase III su 94.9 0.079 1.7E-06 55.4 7.6 39 71-109 122-160 (700)
90 KOG1644 U2-associated snRNP A' 94.9 0.034 7.3E-07 49.0 4.1 89 291-381 58-153 (233)
91 PRK14961 DNA polymerase III su 94.9 0.066 1.4E-06 53.0 6.8 46 72-117 118-163 (363)
92 TIGR00362 DnaA chromosomal rep 94.7 0.083 1.8E-06 53.2 7.1 18 1-18 146-163 (405)
93 PF13504 LRR_7: Leucine rich r 94.6 0.022 4.8E-07 28.9 1.4 16 298-313 2-17 (17)
94 PRK05642 DNA replication initi 94.6 0.1 2.2E-06 48.3 6.8 17 1-17 55-71 (234)
95 COG3899 Predicted ATPase [Gene 94.6 1.6 3.5E-05 48.2 17.1 119 134-265 240-385 (849)
96 PRK14087 dnaA chromosomal repl 94.6 0.075 1.6E-06 54.1 6.4 18 1-18 151-168 (450)
97 TIGR01242 26Sp45 26S proteasom 94.5 0.069 1.5E-06 53.0 5.9 18 1-18 166-183 (364)
98 PRK12402 replication factor C 94.4 0.18 3.9E-06 49.3 8.7 16 1-16 46-61 (337)
99 PRK09112 DNA polymerase III su 94.4 0.11 2.4E-06 51.0 7.0 78 71-154 139-240 (351)
100 cd01133 F1-ATPase_beta F1 ATP 94.4 0.017 3.6E-07 54.1 1.1 25 1-25 79-103 (274)
101 PF00308 Bac_DnaA: Bacterial d 94.2 0.087 1.9E-06 48.1 5.4 20 1-20 44-63 (219)
102 KOG2739 Leucine-rich acidic nu 94.2 0.028 6.1E-07 51.4 2.1 85 294-381 40-129 (260)
103 PRK14956 DNA polymerase III su 94.2 0.082 1.8E-06 53.5 5.6 39 71-109 119-157 (484)
104 PF05496 RuvB_N: Holliday junc 94.2 0.069 1.5E-06 48.2 4.5 19 1-19 60-78 (233)
105 TIGR02903 spore_lon_C ATP-depe 94.1 0.35 7.6E-06 51.3 10.3 47 62-108 281-327 (615)
106 PTZ00112 origin recognition co 94.0 0.47 1E-05 51.3 10.9 19 1-19 791-809 (1164)
107 PRK14957 DNA polymerase III su 94.0 0.12 2.5E-06 53.7 6.3 39 71-109 117-155 (546)
108 PRK14964 DNA polymerase III su 93.9 0.27 5.9E-06 50.3 8.8 39 71-109 114-152 (491)
109 PRK07003 DNA polymerase III su 93.9 0.16 3.5E-06 54.0 7.2 38 72-109 118-155 (830)
110 TIGR00767 rho transcription te 93.6 0.031 6.7E-07 55.0 1.4 28 1-28 178-206 (415)
111 PRK07471 DNA polymerase III su 93.6 0.2 4.3E-06 49.5 7.0 38 72-109 140-177 (365)
112 PRK14955 DNA polymerase III su 93.6 0.19 4E-06 50.5 7.0 47 71-117 125-171 (397)
113 PRK14949 DNA polymerase III su 93.5 0.15 3.2E-06 55.3 6.4 39 71-109 117-155 (944)
114 PRK06921 hypothetical protein; 93.5 0.082 1.8E-06 49.8 3.9 18 1-18 127-144 (266)
115 PRK14960 DNA polymerase III su 93.4 0.29 6.3E-06 51.5 8.0 39 71-109 116-154 (702)
116 PRK08691 DNA polymerase III su 93.4 0.34 7.3E-06 51.3 8.5 16 1-16 48-63 (709)
117 PF00004 AAA: ATPase family as 93.4 0.043 9.2E-07 45.3 1.7 16 1-16 8-23 (132)
118 PRK14959 DNA polymerase III su 93.4 0.32 6.9E-06 51.1 8.3 39 71-109 117-155 (624)
119 PRK09087 hypothetical protein; 93.3 0.33 7.2E-06 44.5 7.6 14 1-14 54-67 (226)
120 PRK05564 DNA polymerase III su 93.2 0.28 6.1E-06 47.5 7.4 38 72-109 92-129 (313)
121 TIGR02881 spore_V_K stage V sp 93.2 0.23 5E-06 46.7 6.6 16 1-16 52-67 (261)
122 CHL00181 cbbX CbbX; Provisiona 93.1 0.31 6.7E-06 46.5 7.4 16 1-16 69-84 (287)
123 PRK07994 DNA polymerase III su 93.1 0.18 3.9E-06 53.3 6.2 39 71-109 117-155 (647)
124 KOG0473 Leucine-rich repeat pr 93.1 0.0051 1.1E-07 55.1 -4.4 81 293-375 38-118 (326)
125 KOG2123 Uncharacterized conser 93.0 0.014 3.1E-07 53.7 -1.8 82 296-381 18-101 (388)
126 PRK00149 dnaA chromosomal repl 93.0 0.22 4.8E-06 50.9 6.6 19 1-19 158-176 (450)
127 TIGR02880 cbbX_cfxQ probable R 93.0 0.53 1.2E-05 44.8 8.7 17 1-17 68-84 (284)
128 PRK10536 hypothetical protein; 92.6 0.27 5.8E-06 45.6 5.8 38 69-109 169-209 (262)
129 PRK14086 dnaA chromosomal repl 92.6 0.14 3E-06 53.5 4.3 18 1-18 324-341 (617)
130 PRK14950 DNA polymerase III su 92.6 0.28 6E-06 51.9 6.8 38 72-109 119-156 (585)
131 PRK05896 DNA polymerase III su 92.4 0.33 7.1E-06 50.7 6.9 16 1-16 48-63 (605)
132 COG1484 DnaC DNA replication p 92.4 0.09 1.9E-06 49.2 2.5 17 1-17 115-131 (254)
133 COG1474 CDC6 Cdc6-related prot 92.4 1.2 2.6E-05 44.0 10.5 73 1-82 52-132 (366)
134 COG0593 DnaA ATPase involved i 92.4 0.25 5.5E-06 48.9 5.7 21 1-21 123-143 (408)
135 PRK04132 replication factor C 92.2 0.64 1.4E-05 50.7 9.0 37 73-109 630-666 (846)
136 PRK07940 DNA polymerase III su 92.1 0.37 8E-06 48.1 6.6 38 72-109 116-153 (394)
137 smart00382 AAA ATPases associa 92.0 0.07 1.5E-06 44.1 1.2 18 1-18 12-29 (148)
138 PRK14962 DNA polymerase III su 92.0 0.24 5.1E-06 50.7 5.1 16 1-16 46-61 (472)
139 PRK14088 dnaA chromosomal repl 91.8 0.28 6E-06 49.9 5.5 19 1-19 140-158 (440)
140 PHA02544 44 clamp loader, smal 91.8 0.57 1.2E-05 45.4 7.5 15 1-15 53-67 (316)
141 PRK12608 transcription termina 91.8 0.094 2E-06 51.3 2.0 18 1-18 143-160 (380)
142 PF13191 AAA_16: AAA ATPase do 91.6 0.19 4.2E-06 44.1 3.6 18 1-18 34-51 (185)
143 TIGR00678 holB DNA polymerase 91.5 0.7 1.5E-05 40.9 7.2 39 71-109 94-132 (188)
144 PRK08939 primosomal protein Dn 91.4 0.93 2E-05 43.6 8.3 88 1-109 166-257 (306)
145 PRK09183 transposase/IS protei 91.1 0.31 6.8E-06 45.7 4.7 16 1-16 112-127 (259)
146 PRK12377 putative replication 91.0 0.36 7.8E-06 44.9 4.9 18 1-18 111-128 (248)
147 PRK08181 transposase; Validate 91.0 0.24 5.3E-06 46.6 3.8 18 1-18 116-133 (269)
148 smart00370 LRR Leucine-rich re 90.9 0.17 3.7E-06 28.7 1.7 20 296-315 1-20 (26)
149 smart00369 LRR_TYP Leucine-ric 90.9 0.17 3.7E-06 28.7 1.7 20 296-315 1-20 (26)
150 PRK14954 DNA polymerase III su 90.9 0.7 1.5E-05 48.9 7.4 17 1-17 48-64 (620)
151 PRK00440 rfc replication facto 90.7 1.5 3.3E-05 42.3 9.3 16 1-16 48-63 (319)
152 PF04665 Pox_A32: Poxvirus A32 90.5 0.052 1.1E-06 49.8 -1.1 19 1-19 23-41 (241)
153 PRK08903 DnaA regulatory inact 90.5 0.65 1.4E-05 42.6 6.1 16 1-16 52-67 (227)
154 PF01695 IstB_IS21: IstB-like 90.5 0.22 4.8E-06 43.8 2.9 17 1-17 57-73 (178)
155 PRK14951 DNA polymerase III su 90.2 0.95 2.1E-05 47.8 7.6 38 72-109 123-160 (618)
156 PRK05707 DNA polymerase III su 90.1 1.2 2.6E-05 43.3 7.9 17 1-17 32-48 (328)
157 PRK09111 DNA polymerase III su 90.0 1.1 2.3E-05 47.3 7.9 17 1-17 56-72 (598)
158 KOG4341 F-box protein containi 89.9 0.23 4.9E-06 48.6 2.6 139 318-465 292-437 (483)
159 PRK06526 transposase; Provisio 89.8 0.33 7.2E-06 45.3 3.6 17 1-17 108-124 (254)
160 TIGR02397 dnaX_nterm DNA polym 89.7 0.9 2E-05 44.7 6.8 17 1-17 46-62 (355)
161 PRK07952 DNA replication prote 89.6 0.31 6.7E-06 45.2 3.1 18 1-18 109-126 (244)
162 COG1373 Predicted ATPase (AAA+ 89.4 0.37 8E-06 48.3 3.8 34 73-109 94-127 (398)
163 PRK14969 DNA polymerase III su 89.3 1.2 2.6E-05 46.4 7.6 17 1-17 48-64 (527)
164 smart00369 LRR_TYP Leucine-ric 89.0 0.24 5.2E-06 28.0 1.3 18 453-470 1-18 (26)
165 smart00370 LRR Leucine-rich re 89.0 0.24 5.2E-06 28.0 1.3 18 453-470 1-18 (26)
166 PRK12422 chromosomal replicati 88.9 1.1 2.4E-05 45.6 6.9 18 1-18 151-168 (445)
167 PRK06620 hypothetical protein; 88.7 0.7 1.5E-05 42.0 4.8 15 1-15 54-68 (214)
168 PF02562 PhoH: PhoH-like prote 88.5 0.35 7.7E-06 43.4 2.7 38 69-109 112-152 (205)
169 TIGR03345 VI_ClpV1 type VI sec 88.3 1.1 2.3E-05 49.6 6.7 38 72-109 667-715 (852)
170 KOG0741 AAA+-type ATPase [Post 88.2 2 4.4E-05 43.6 7.8 31 65-97 590-620 (744)
171 PF13207 AAA_17: AAA domain; P 88.0 0.28 6.1E-06 39.8 1.6 15 1-15 9-23 (121)
172 PF05673 DUF815: Protein of un 87.3 5 0.00011 36.9 9.3 81 1-109 62-147 (249)
173 COG4088 Predicted nucleotide k 87.2 0.99 2.1E-05 40.1 4.5 19 1-19 11-29 (261)
174 PF07726 AAA_3: ATPase family 86.8 0.17 3.7E-06 41.4 -0.4 20 1-20 9-28 (131)
175 PRK14948 DNA polymerase III su 86.8 1.1 2.3E-05 47.6 5.4 17 1-17 48-64 (620)
176 KOG0735 AAA+-type ATPase [Post 86.5 0.44 9.6E-06 49.8 2.3 17 1-17 441-457 (952)
177 PF13238 AAA_18: AAA domain; P 86.4 0.37 7.9E-06 39.4 1.4 15 1-15 8-22 (129)
178 KOG2982 Uncharacterized conser 86.4 0.19 4.1E-06 47.0 -0.4 80 295-377 69-155 (418)
179 KOG2227 Pre-initiation complex 86.3 3 6.5E-05 41.8 7.7 98 1-109 185-293 (529)
180 COG0542 clpA ATP-binding subun 86.2 2.3 5E-05 45.8 7.5 109 1-120 531-651 (786)
181 PRK06835 DNA replication prote 86.1 1.7 3.7E-05 42.3 6.0 18 1-18 193-210 (329)
182 KOG1947 Leucine rich repeat pr 86.1 0.36 7.9E-06 49.5 1.5 59 296-354 187-253 (482)
183 PRK08118 topology modulation p 86.1 0.39 8.4E-06 41.8 1.5 17 1-17 11-27 (167)
184 TIGR03689 pup_AAA proteasome A 86.0 0.35 7.5E-06 49.7 1.3 18 1-18 226-243 (512)
185 TIGR02639 ClpA ATP-dependent C 86.0 0.76 1.6E-05 50.1 3.9 28 72-99 552-579 (731)
186 PRK08451 DNA polymerase III su 85.7 3.5 7.6E-05 42.8 8.4 38 72-109 116-153 (535)
187 PRK03992 proteasome-activating 85.7 0.68 1.5E-05 46.3 3.2 17 1-17 175-191 (389)
188 PRK14953 DNA polymerase III su 85.7 2.8 6.2E-05 43.1 7.7 39 71-109 117-155 (486)
189 PRK14958 DNA polymerase III su 85.7 3 6.4E-05 43.3 7.9 39 71-109 117-155 (509)
190 COG2255 RuvB Holliday junction 85.6 10 0.00022 35.7 10.4 119 110-246 183-312 (332)
191 CHL00176 ftsH cell division pr 85.6 2.5 5.5E-05 45.0 7.4 15 1-15 226-240 (638)
192 PRK08727 hypothetical protein; 85.5 1.6 3.6E-05 40.1 5.4 18 1-18 51-68 (233)
193 PRK06305 DNA polymerase III su 85.5 2.9 6.2E-05 42.7 7.6 17 1-17 49-65 (451)
194 PRK14965 DNA polymerase III su 85.4 1.4 3E-05 46.5 5.5 16 1-16 48-63 (576)
195 COG5238 RNA1 Ran GTPase-activa 85.4 1.2 2.6E-05 41.3 4.3 39 292-330 87-130 (388)
196 PTZ00454 26S protease regulato 85.3 0.68 1.5E-05 46.3 3.0 17 1-17 189-205 (398)
197 PRK06871 DNA polymerase III su 85.2 3.9 8.4E-05 39.7 7.9 38 72-109 106-143 (325)
198 TIGR03575 selen_PSTK_euk L-ser 85.1 1.9 4E-05 42.1 5.7 16 1-16 9-24 (340)
199 PRK10867 signal recognition pa 85.0 0.9 1.9E-05 45.8 3.6 18 1-18 110-127 (433)
200 PRK14952 DNA polymerase III su 84.9 2.2 4.7E-05 44.9 6.5 39 71-109 116-154 (584)
201 PRK06647 DNA polymerase III su 84.8 3 6.5E-05 43.8 7.5 47 71-117 117-163 (563)
202 PF14516 AAA_35: AAA-like doma 84.7 17 0.00037 35.4 12.4 45 110-162 203-247 (331)
203 COG0703 AroK Shikimate kinase 84.7 1.6 3.4E-05 37.9 4.5 17 1-17 12-28 (172)
204 COG1428 Deoxynucleoside kinase 84.6 0.46 1E-05 42.3 1.2 16 1-16 14-29 (216)
205 PF01583 APS_kinase: Adenylyls 84.0 0.66 1.4E-05 39.6 1.9 19 1-19 12-30 (156)
206 PRK14970 DNA polymerase III su 83.9 4.3 9.3E-05 40.2 8.0 17 1-17 49-65 (367)
207 TIGR00959 ffh signal recogniti 83.9 0.97 2.1E-05 45.5 3.3 16 1-16 109-124 (428)
208 PRK07764 DNA polymerase III su 83.9 4.3 9.3E-05 44.6 8.5 39 71-109 118-156 (824)
209 PRK12678 transcription termina 83.9 0.3 6.5E-06 50.3 -0.3 18 1-18 426-443 (672)
210 KOG0744 AAA+-type ATPase [Post 83.4 0.93 2E-05 43.1 2.7 67 1-82 187-259 (423)
211 smart00364 LRR_BAC Leucine-ric 83.0 0.61 1.3E-05 26.4 0.9 18 453-470 1-18 (26)
212 COG2607 Predicted ATPase (AAA+ 82.7 7.7 0.00017 35.6 8.0 81 1-109 95-178 (287)
213 COG0563 Adk Adenylate kinase a 82.5 3 6.5E-05 36.6 5.5 14 1-14 10-23 (178)
214 PRK05541 adenylylsulfate kinas 82.2 0.91 2E-05 39.7 2.2 19 1-19 17-35 (176)
215 PF00448 SRP54: SRP54-type pro 82.1 0.91 2E-05 40.6 2.1 18 1-18 11-28 (196)
216 PF13604 AAA_30: AAA domain; P 82.0 0.5 1.1E-05 42.3 0.4 35 73-109 93-127 (196)
217 TIGR01241 FtsH_fam ATP-depende 81.7 1.4 3E-05 45.7 3.7 15 1-15 98-112 (495)
218 PF00910 RNA_helicase: RNA hel 81.7 1 2.2E-05 35.8 2.1 19 1-19 8-26 (107)
219 PRK08769 DNA polymerase III su 81.4 3.7 7.9E-05 39.7 6.1 17 1-17 36-52 (319)
220 PRK07133 DNA polymerase III su 81.3 6.1 0.00013 42.5 8.2 16 1-16 50-65 (725)
221 PRK11889 flhF flagellar biosyn 80.9 1.8 3.8E-05 43.0 3.7 16 1-16 251-266 (436)
222 COG2812 DnaX DNA polymerase II 80.6 7.1 0.00015 40.2 8.1 17 1-17 48-64 (515)
223 KOG1969 DNA replication checkp 80.6 1.3 2.8E-05 46.7 2.8 14 1-14 336-349 (877)
224 PRK08084 DNA replication initi 80.4 3.7 8E-05 37.9 5.6 17 1-17 55-71 (235)
225 PHA00729 NTP-binding motif con 80.2 0.95 2E-05 41.2 1.5 16 1-16 27-42 (226)
226 PRK14971 DNA polymerase III su 80.0 6.5 0.00014 41.8 7.9 38 72-109 120-157 (614)
227 cd01122 GP4d_helicase GP4d_hel 79.9 3.1 6.7E-05 39.2 5.1 28 1-28 40-67 (271)
228 PRK12597 F0F1 ATP synthase sub 79.8 1 2.2E-05 45.8 1.7 18 1-18 153-170 (461)
229 PRK05800 cobU adenosylcobinami 79.7 0.51 1.1E-05 41.2 -0.4 15 1-15 11-25 (170)
230 PF08433 KTI12: Chromatin asso 79.5 0.83 1.8E-05 43.1 1.0 17 1-17 11-27 (270)
231 cd02019 NK Nucleoside/nucleoti 79.5 1.1 2.3E-05 32.4 1.4 15 1-15 9-23 (69)
232 PRK07261 topology modulation p 79.5 0.98 2.1E-05 39.4 1.4 25 58-84 44-68 (171)
233 KOG0730 AAA+-type ATPase [Post 79.4 4.8 0.0001 42.1 6.4 18 1-18 478-495 (693)
234 PF07693 KAP_NTPase: KAP famil 79.0 3.4 7.3E-05 40.1 5.1 51 59-109 156-210 (325)
235 COG1618 Predicted nucleotide k 78.8 1.2 2.7E-05 37.9 1.7 18 1-18 15-32 (179)
236 PTZ00361 26 proteosome regulat 78.7 0.66 1.4E-05 46.9 0.1 18 1-18 227-244 (438)
237 PF03266 NTPase_1: NTPase; In 78.4 1.3 2.9E-05 38.4 1.9 18 1-18 9-26 (168)
238 COG1066 Sms Predicted ATP-depe 78.2 1.7 3.6E-05 42.8 2.6 19 1-19 103-121 (456)
239 PF02367 UPF0079: Uncharacteri 78.0 1.2 2.5E-05 36.5 1.3 15 1-15 25-39 (123)
240 TIGR03346 chaperone_ClpB ATP-d 77.4 2.3 5E-05 47.2 3.9 38 73-110 667-715 (852)
241 PF07728 AAA_5: AAA domain (dy 77.4 1.3 2.9E-05 36.8 1.6 15 1-15 9-23 (139)
242 PRK08233 hypothetical protein; 77.4 1.2 2.5E-05 39.1 1.3 16 1-16 13-28 (182)
243 PRK00771 signal recognition pa 77.2 3.3 7.2E-05 41.9 4.5 18 1-18 105-122 (437)
244 cd03115 SRP The signal recogni 77.2 1.6 3.4E-05 38.0 2.0 18 1-18 10-27 (173)
245 KOG0733 Nuclear AAA ATPase (VC 77.1 7.3 0.00016 40.5 6.8 59 1-82 233-291 (802)
246 KOG2028 ATPase related to the 77.1 3 6.5E-05 40.4 3.9 17 1-17 172-188 (554)
247 cd01132 F1_ATPase_alpha F1 ATP 77.0 1.3 2.8E-05 41.6 1.4 18 63-82 153-170 (274)
248 PF13306 LRR_5: Leucine rich r 76.8 3.2 6.9E-05 33.8 3.7 78 292-374 7-87 (129)
249 cd01120 RecA-like_NTPases RecA 76.8 1.7 3.6E-05 36.9 2.1 17 1-17 9-25 (165)
250 TIGR03499 FlhF flagellar biosy 76.7 3.6 7.7E-05 39.2 4.4 18 1-18 204-221 (282)
251 PF01202 SKI: Shikimate kinase 76.7 0.99 2.1E-05 38.8 0.6 19 1-19 2-20 (158)
252 PF13306 LRR_5: Leucine rich r 76.5 7.7 0.00017 31.4 5.9 78 290-373 28-108 (129)
253 PRK09280 F0F1 ATP synthase sub 76.5 1.4 3E-05 44.7 1.6 18 1-18 154-171 (463)
254 KOG2543 Origin recognition com 76.1 4.3 9.4E-05 39.6 4.7 15 1-15 40-54 (438)
255 PRK12723 flagellar biosynthesi 76.0 5.5 0.00012 39.7 5.6 17 1-17 184-200 (388)
256 cd01983 Fer4_NifH The Fer4_Nif 76.0 1.8 3.9E-05 32.9 1.9 17 1-17 9-25 (99)
257 PRK10865 protein disaggregatio 75.9 3 6.4E-05 46.3 4.1 25 74-98 671-695 (857)
258 PRK07993 DNA polymerase III su 75.9 8.4 0.00018 37.6 6.8 16 1-16 34-49 (334)
259 PRK06321 replicative DNA helic 75.7 5.3 0.00012 41.0 5.6 37 1-37 236-275 (472)
260 PF00485 PRK: Phosphoribulokin 75.3 1.5 3.3E-05 39.0 1.4 81 1-82 9-92 (194)
261 PRK05563 DNA polymerase III su 75.0 14 0.0003 39.0 8.6 16 1-16 48-63 (559)
262 PRK11034 clpA ATP-dependent Cl 74.9 1.6 3.6E-05 47.3 1.8 16 1-16 498-513 (758)
263 COG0529 CysC Adenylylsulfate k 74.8 1.9 4.2E-05 37.3 1.8 18 1-18 33-50 (197)
264 PRK10646 ADP-binding protein; 74.8 1.5 3.3E-05 37.3 1.2 15 1-15 38-52 (153)
265 PLN00020 ribulose bisphosphate 74.7 2.2 4.9E-05 41.7 2.4 17 1-17 158-174 (413)
266 cd01394 radB RadB. The archaea 74.7 2.5 5.5E-05 38.3 2.7 17 1-17 29-45 (218)
267 PRK05480 uridine/cytidine kina 74.6 1.6 3.5E-05 39.4 1.4 15 1-15 16-30 (209)
268 CHL00095 clpC Clp protease ATP 74.5 2.1 4.5E-05 47.4 2.5 51 66-116 603-665 (821)
269 TIGR00150 HI0065_YjeE ATPase, 74.2 1.7 3.7E-05 36.0 1.4 15 1-15 32-46 (133)
270 TIGR01039 atpD ATP synthase, F 74.2 1.3 2.7E-05 44.9 0.6 18 1-18 153-170 (461)
271 COG1875 NYN ribonuclease and A 74.2 4.2 9.2E-05 39.5 4.1 35 74-111 352-386 (436)
272 PF13671 AAA_33: AAA domain; P 73.6 1.8 4E-05 36.1 1.4 15 1-15 9-23 (143)
273 PRK14974 cell division protein 73.5 5.7 0.00012 38.7 4.9 17 1-17 150-166 (336)
274 PRK03839 putative kinase; Prov 72.8 1.9 4.2E-05 37.7 1.5 17 1-17 10-26 (180)
275 PRK13975 thymidylate kinase; P 72.7 1.8 4E-05 38.4 1.3 17 1-17 12-28 (196)
276 COG3267 ExeA Type II secretory 72.7 13 0.00028 34.4 6.6 29 64-92 120-150 (269)
277 PRK06762 hypothetical protein; 71.9 2.1 4.6E-05 36.9 1.5 15 1-15 12-26 (166)
278 PF08303 tRNA_lig_kinase: tRNA 71.9 2 4.3E-05 36.8 1.2 15 1-15 9-23 (168)
279 PRK05703 flhF flagellar biosyn 71.3 4.5 9.7E-05 40.9 3.8 16 1-16 231-246 (424)
280 PF00693 Herpes_TK: Thymidine 71.2 2.1 4.5E-05 40.2 1.3 15 1-15 4-18 (281)
281 cd02021 GntK Gluconate kinase 71.1 2.1 4.6E-05 36.2 1.3 15 1-15 9-23 (150)
282 PF13521 AAA_28: AAA domain; P 71.0 2 4.2E-05 37.0 1.0 14 1-14 9-22 (163)
283 KOG0989 Replication factor C, 71.0 7 0.00015 37.1 4.6 68 76-147 132-223 (346)
284 PF03969 AFG1_ATPase: AFG1-lik 71.0 3.3 7.1E-05 40.9 2.7 88 1-109 72-164 (362)
285 PTZ00301 uridine kinase; Provi 71.0 2.5 5.4E-05 38.2 1.7 18 1-18 13-30 (210)
286 PF03796 DnaB_C: DnaB-like hel 70.9 1.6 3.4E-05 41.0 0.4 28 1-28 29-56 (259)
287 PRK09361 radB DNA repair and r 70.8 3.2 7E-05 37.8 2.5 17 1-17 33-49 (225)
288 KOG0729 26S proteasome regulat 70.7 5.6 0.00012 36.8 3.9 19 1-19 221-239 (435)
289 cd02025 PanK Pantothenate kina 70.5 2.5 5.4E-05 38.6 1.6 17 1-17 9-25 (220)
290 PRK06696 uridine kinase; Valid 70.5 2.7 5.8E-05 38.4 1.9 17 1-17 32-48 (223)
291 KOG0473 Leucine-rich repeat pr 70.4 0.096 2.1E-06 47.2 -7.2 66 290-356 58-123 (326)
292 KOG0726 26S proteasome regulat 70.4 2.9 6.3E-05 39.2 2.0 31 1-31 229-259 (440)
293 TIGR02639 ClpA ATP-dependent C 70.2 2.1 4.5E-05 46.7 1.3 17 1-17 213-229 (731)
294 PRK04296 thymidine kinase; Pro 70.0 1.6 3.6E-05 38.7 0.3 48 59-109 65-112 (190)
295 PF01656 CbiA: CobQ/CobB/MinD/ 69.9 2.9 6.3E-05 36.9 1.9 17 1-17 9-25 (195)
296 PF03205 MobB: Molybdopterin g 69.8 3 6.5E-05 35.0 1.9 18 1-18 10-27 (140)
297 PF02223 Thymidylate_kin: Thym 69.7 2.9 6.3E-05 36.8 1.9 19 1-19 6-24 (186)
298 PF05621 TniB: Bacterial TniB 69.5 28 0.0006 33.2 8.4 15 1-15 71-85 (302)
299 cd01672 TMPK Thymidine monopho 69.3 3 6.4E-05 36.9 1.9 17 1-17 10-26 (200)
300 PRK06217 hypothetical protein; 69.3 2.5 5.4E-05 37.2 1.4 15 1-15 11-25 (183)
301 PRK08760 replicative DNA helic 69.2 7.1 0.00015 40.2 4.8 17 1-17 239-255 (476)
302 TIGR00235 udk uridine kinase. 68.9 2.7 5.7E-05 37.9 1.5 16 1-16 16-31 (207)
303 PRK00625 shikimate kinase; Pro 68.8 2.7 5.9E-05 36.7 1.5 16 1-16 10-25 (173)
304 PF00006 ATP-synt_ab: ATP synt 68.8 1.9 4.1E-05 39.1 0.5 16 1-16 25-40 (215)
305 KOG3347 Predicted nucleotide k 68.7 4.5 9.8E-05 34.1 2.6 14 1-14 17-30 (176)
306 TIGR01243 CDC48 AAA family ATP 68.7 2.7 5.9E-05 45.9 1.8 16 1-16 222-237 (733)
307 PRK00131 aroK shikimate kinase 68.5 2.8 6E-05 36.2 1.5 16 1-16 14-29 (175)
308 COG0802 Predicted ATPase or ki 68.5 2.7 5.9E-05 35.4 1.3 16 1-16 35-50 (149)
309 KOG1514 Origin recognition com 68.5 35 0.00075 36.3 9.4 17 1-17 432-448 (767)
310 smart00365 LRR_SD22 Leucine-ri 68.5 3.8 8.3E-05 23.3 1.5 16 297-312 2-17 (26)
311 PHA02518 ParA-like protein; Pr 68.4 3 6.5E-05 37.4 1.8 17 1-17 11-27 (211)
312 TIGR03346 chaperone_ClpB ATP-d 68.3 6.2 0.00013 43.9 4.5 17 1-17 204-220 (852)
313 cd02024 NRK1 Nicotinamide ribo 68.1 2.8 6E-05 37.2 1.4 15 1-15 9-23 (187)
314 COG1222 RPT1 ATP-dependent 26S 67.9 14 0.0003 36.0 6.0 19 1-19 195-213 (406)
315 KOG4341 F-box protein containi 67.8 3.5 7.6E-05 40.7 2.1 158 295-463 292-461 (483)
316 CHL00095 clpC Clp protease ATP 67.6 2.9 6.3E-05 46.2 1.7 17 1-17 210-226 (821)
317 TIGR01243 CDC48 AAA family ATP 67.6 3.6 7.9E-05 44.9 2.5 16 1-16 497-512 (733)
318 PRK08006 replicative DNA helic 67.5 5.7 0.00012 40.8 3.7 37 1-37 234-273 (471)
319 TIGR01313 therm_gnt_kin carboh 67.5 2.8 6.2E-05 35.9 1.3 15 1-15 8-22 (163)
320 cd02042 ParA ParA and ParB of 67.2 3.7 8E-05 32.1 1.8 17 1-17 10-26 (104)
321 cd00227 CPT Chloramphenicol (C 67.2 2.9 6.4E-05 36.5 1.4 16 1-16 12-27 (175)
322 TIGR02012 tigrfam_recA protein 66.8 4.6 0.0001 39.0 2.7 26 57-82 116-142 (321)
323 cd02036 MinD Bacterial cell di 66.7 3.5 7.5E-05 35.8 1.7 18 1-18 10-27 (179)
324 PF00406 ADK: Adenylate kinase 66.6 13 0.00028 31.3 5.3 15 1-15 6-20 (151)
325 TIGR00602 rad24 checkpoint pro 66.5 11 0.00023 40.2 5.5 18 1-18 120-137 (637)
326 smart00534 MUTSac ATPase domai 66.4 3.1 6.6E-05 36.8 1.3 14 1-14 9-22 (185)
327 cd02028 UMPK_like Uridine mono 66.3 3.5 7.6E-05 36.2 1.7 17 1-17 9-25 (179)
328 PRK06547 hypothetical protein; 66.2 3.2 6.9E-05 36.2 1.4 15 1-15 25-39 (172)
329 PF02374 ArsA_ATPase: Anion-tr 66.1 3.7 7.9E-05 39.6 1.9 17 1-17 11-27 (305)
330 cd01121 Sms Sms (bacterial rad 66.0 3.4 7.4E-05 40.9 1.7 17 1-17 92-108 (372)
331 CHL00195 ycf46 Ycf46; Provisio 66.0 3.3 7.2E-05 42.6 1.7 16 1-16 269-284 (489)
332 CHL00059 atpA ATP synthase CF1 65.8 2.1 4.4E-05 43.6 0.1 18 63-82 225-242 (485)
333 TIGR00041 DTMP_kinase thymidyl 65.7 3.9 8.4E-05 36.3 1.9 17 1-17 13-29 (195)
334 cd02023 UMPK Uridine monophosp 65.3 3.4 7.4E-05 36.8 1.4 15 1-15 9-23 (198)
335 TIGR00176 mobB molybdopterin-g 65.3 3.9 8.6E-05 35.0 1.7 18 1-18 9-26 (155)
336 KOG0727 26S proteasome regulat 65.2 5.3 0.00012 36.7 2.6 21 1-21 199-219 (408)
337 PRK05973 replicative DNA helic 65.1 4.6 9.9E-05 37.2 2.2 17 1-17 74-90 (237)
338 TIGR03345 VI_ClpV1 type VI sec 65.0 3 6.5E-05 46.2 1.2 17 1-17 218-234 (852)
339 COG1192 Soj ATPases involved i 64.9 3.6 7.9E-05 38.4 1.6 18 1-18 13-30 (259)
340 CHL00060 atpB ATP synthase CF1 64.8 1.5 3.3E-05 44.6 -1.0 17 1-17 171-187 (494)
341 KOG3864 Uncharacterized conser 64.6 2.4 5.2E-05 37.6 0.3 79 298-376 102-184 (221)
342 PRK13947 shikimate kinase; Pro 64.6 2.7 5.8E-05 36.4 0.6 17 1-17 11-27 (171)
343 cd02037 MRP-like MRP (Multiple 64.5 4.6 9.9E-05 35.0 2.0 17 1-17 10-26 (169)
344 PRK14722 flhF flagellar biosyn 64.5 4 8.6E-05 40.4 1.8 17 1-17 147-163 (374)
345 cd02020 CMPK Cytidine monophos 64.5 3.8 8.2E-05 34.2 1.5 15 1-15 9-23 (147)
346 TIGR01360 aden_kin_iso1 adenyl 64.5 3.8 8.2E-05 36.0 1.6 15 1-15 13-27 (188)
347 TIGR02322 phosphon_PhnN phosph 64.5 3.5 7.7E-05 36.0 1.3 15 1-15 11-25 (179)
348 PRK11545 gntK gluconate kinase 64.5 3.6 7.9E-05 35.5 1.4 16 1-16 5-20 (163)
349 PRK00889 adenylylsulfate kinas 64.3 4.3 9.3E-05 35.3 1.8 17 1-17 14-30 (175)
350 cd02030 NDUO42 NADH:Ubiquinone 64.3 3.7 8.1E-05 37.3 1.5 16 1-16 9-24 (219)
351 PRK07667 uridine kinase; Provi 64.2 4.2 9.1E-05 36.2 1.8 17 1-17 27-43 (193)
352 PRK14723 flhF flagellar biosyn 64.2 5.9 0.00013 42.9 3.1 37 71-109 293-331 (767)
353 cd01131 PilT Pilus retraction 64.2 3.2 6.9E-05 37.2 1.0 44 61-109 62-105 (198)
354 TIGR00416 sms DNA repair prote 64.0 4.8 0.0001 41.1 2.4 17 1-17 104-120 (454)
355 PRK10865 protein disaggregatio 63.7 3 6.4E-05 46.3 0.9 17 1-17 209-225 (857)
356 PRK08972 fliI flagellum-specif 63.6 1.7 3.8E-05 43.6 -0.9 14 1-14 172-185 (444)
357 TIGR02237 recomb_radB DNA repa 63.4 5.4 0.00012 35.8 2.4 17 1-17 22-38 (209)
358 TIGR03305 alt_F1F0_F1_bet alte 63.0 2.6 5.5E-05 42.6 0.2 16 1-16 148-163 (449)
359 PF07724 AAA_2: AAA domain (Cd 63.0 4.4 9.4E-05 35.3 1.6 16 1-16 13-28 (171)
360 PRK06964 DNA polymerase III su 63.0 28 0.00061 34.0 7.3 38 72-109 131-168 (342)
361 PRK09165 replicative DNA helic 62.6 13 0.00029 38.4 5.3 18 1-18 227-244 (497)
362 PTZ00088 adenylate kinase 1; P 62.5 11 0.00024 34.5 4.3 15 1-15 16-30 (229)
363 KOG2383 Predicted ATPase [Gene 62.3 16 0.00034 36.2 5.2 99 1-109 124-230 (467)
364 PRK12724 flagellar biosynthesi 62.2 15 0.00033 36.9 5.4 15 1-15 233-247 (432)
365 cd00983 recA RecA is a bacter 62.0 6.5 0.00014 38.1 2.7 27 56-82 115-142 (325)
366 cd02027 APSK Adenosine 5'-phos 61.9 4.6 0.0001 34.2 1.6 16 1-16 9-24 (149)
367 TIGR02640 gas_vesic_GvpN gas v 61.8 3.2 7E-05 39.0 0.6 15 1-15 31-45 (262)
368 KOG1947 Leucine rich repeat pr 61.7 3 6.6E-05 42.6 0.5 137 318-464 186-331 (482)
369 PRK13695 putative NTPase; Prov 61.7 5.1 0.00011 34.9 1.8 17 1-17 10-26 (174)
370 PRK13233 nifH nitrogenase redu 61.6 2.5 5.5E-05 39.9 -0.1 17 1-17 12-28 (275)
371 cd02040 NifH NifH gene encodes 61.6 4.6 0.0001 37.9 1.7 17 1-17 11-27 (270)
372 cd00464 SK Shikimate kinase (S 61.6 4.7 0.0001 34.0 1.5 16 1-16 9-24 (154)
373 PF06564 YhjQ: YhjQ protein; 61.5 5.1 0.00011 37.0 1.9 17 1-17 12-28 (243)
374 TIGR01041 ATP_syn_B_arch ATP s 61.5 2.5 5.4E-05 43.0 -0.2 16 1-16 151-166 (458)
375 PF13516 LRR_6: Leucine Rich r 61.3 4.9 0.00011 22.0 1.1 10 321-330 3-12 (24)
376 PRK13976 thymidylate kinase; P 61.2 5.4 0.00012 36.1 1.9 18 1-18 10-27 (209)
377 PF08477 Miro: Miro-like prote 61.2 4.4 9.5E-05 32.4 1.3 14 1-14 9-22 (119)
378 PHA02542 41 41 helicase; Provi 61.2 12 0.00026 38.5 4.6 16 1-16 200-215 (473)
379 PRK07933 thymidylate kinase; V 60.5 5.3 0.00012 36.2 1.8 18 1-18 10-27 (213)
380 COG0125 Tmk Thymidylate kinase 60.3 5.6 0.00012 35.9 1.8 19 1-19 13-31 (208)
381 TIGR01281 DPOR_bchL light-inde 60.2 5 0.00011 37.7 1.6 17 1-17 10-26 (268)
382 COG0305 DnaB Replicative DNA h 60.1 9 0.00019 38.6 3.4 85 1-90 206-294 (435)
383 PRK04040 adenylate kinase; Pro 60.0 5.1 0.00011 35.5 1.5 16 1-16 12-27 (188)
384 COG0572 Udk Uridine kinase [Nu 59.8 4.7 0.0001 36.4 1.2 64 1-74 18-85 (218)
385 TIGR03324 alt_F1F0_F1_al alter 59.8 2.7 5.8E-05 43.0 -0.3 12 71-82 252-263 (497)
386 PRK00698 tmk thymidylate kinas 59.7 5.8 0.00013 35.4 1.9 17 1-17 13-29 (205)
387 PRK10037 cell division protein 59.6 5.3 0.00012 37.2 1.7 18 1-18 12-29 (250)
388 TIGR01359 UMP_CMP_kin_fam UMP- 59.5 5 0.00011 35.1 1.4 15 1-15 9-23 (183)
389 PRK09270 nucleoside triphospha 59.4 5.3 0.00012 36.6 1.6 18 1-18 43-60 (229)
390 PRK10463 hydrogenase nickel in 59.4 6.5 0.00014 37.3 2.2 18 1-18 114-131 (290)
391 COG0464 SpoVK ATPases of the A 59.3 5 0.00011 41.6 1.6 59 1-82 286-344 (494)
392 PRK07399 DNA polymerase III su 59.2 35 0.00076 33.0 7.2 17 1-17 36-52 (314)
393 cd00984 DnaB_C DnaB helicase C 59.1 23 0.00049 32.5 5.8 18 1-18 23-40 (242)
394 cd02032 Bchl_like This family 59.1 5.5 0.00012 37.4 1.7 17 1-17 10-26 (267)
395 PRK13185 chlL protochlorophyll 59.0 5.6 0.00012 37.4 1.7 17 1-17 12-28 (270)
396 cd02034 CooC The accessory pro 58.9 6.3 0.00014 31.8 1.8 17 1-17 9-25 (116)
397 COG4133 CcmA ABC-type transpor 58.9 30 0.00064 30.6 5.9 25 59-83 134-158 (209)
398 cd01673 dNK Deoxyribonucleosid 58.7 5.2 0.00011 35.4 1.4 14 1-14 9-22 (193)
399 smart00763 AAA_PrkA PrkA AAA d 58.6 5.8 0.00013 38.9 1.7 17 1-17 88-104 (361)
400 PRK05748 replicative DNA helic 58.6 19 0.00042 36.7 5.7 17 1-17 213-229 (448)
401 PRK12727 flagellar biosynthesi 58.5 10 0.00022 39.3 3.5 17 1-17 360-376 (559)
402 TIGR03574 selen_PSTK L-seryl-t 58.5 6 0.00013 36.8 1.8 17 1-17 9-25 (249)
403 PRK08927 fliI flagellum-specif 58.2 6.8 0.00015 39.6 2.2 15 1-15 168-182 (442)
404 PRK13230 nitrogenase reductase 58.1 5.8 0.00013 37.6 1.7 17 1-17 11-27 (279)
405 KOG4308 LRR-containing protein 58.1 0.39 8.5E-06 49.1 -6.7 48 415-467 255-303 (478)
406 TIGR01969 minD_arch cell divis 58.0 6 0.00013 36.6 1.7 17 1-17 11-27 (251)
407 PRK05057 aroK shikimate kinase 58.0 5.5 0.00012 34.7 1.4 16 1-16 14-29 (172)
408 PF10662 PduV-EutP: Ethanolami 57.9 4.7 0.0001 33.9 0.8 13 1-13 11-23 (143)
409 TIGR01040 V-ATPase_V1_B V-type 57.6 4.3 9.4E-05 41.0 0.7 16 1-16 151-166 (466)
410 COG0003 ArsA Predicted ATPase 57.6 6.1 0.00013 38.2 1.7 19 1-19 12-30 (322)
411 cd01393 recA_like RecA is a b 57.4 9.5 0.00021 34.7 2.9 15 1-15 29-43 (226)
412 PRK15429 formate hydrogenlyase 57.3 17 0.00038 39.4 5.3 15 1-15 409-423 (686)
413 PRK13949 shikimate kinase; Pro 57.3 5.9 0.00013 34.4 1.4 16 1-16 11-26 (169)
414 KOG1051 Chaperone HSP104 and r 57.2 12 0.00027 41.0 4.1 15 1-15 601-615 (898)
415 smart00367 LRR_CC Leucine-rich 57.2 7.7 0.00017 21.7 1.5 14 320-333 2-15 (26)
416 PRK03846 adenylylsulfate kinas 57.1 6 0.00013 35.3 1.5 16 1-16 34-49 (198)
417 PRK13232 nifH nitrogenase redu 57.0 6.5 0.00014 37.1 1.8 17 1-17 11-27 (273)
418 PRK06090 DNA polymerase III su 57.0 28 0.00062 33.7 6.2 16 1-16 35-50 (319)
419 PRK11823 DNA repair protein Ra 56.6 7.3 0.00016 39.7 2.2 16 1-16 90-105 (446)
420 TIGR02858 spore_III_AA stage I 56.6 8.6 0.00019 36.3 2.5 33 72-109 193-225 (270)
421 PRK12339 2-phosphoglycerate ki 56.4 5.9 0.00013 35.4 1.3 15 1-15 13-27 (197)
422 PRK13973 thymidylate kinase; P 56.2 6.9 0.00015 35.4 1.8 17 1-17 13-29 (213)
423 COG1102 Cmk Cytidylate kinase 56.0 26 0.00056 30.1 4.9 17 1-17 10-26 (179)
424 PRK13948 shikimate kinase; Pro 55.9 4.2 9.1E-05 35.8 0.3 17 1-17 20-36 (182)
425 TIGR01287 nifH nitrogenase iro 55.9 6.6 0.00014 37.1 1.7 17 1-17 10-26 (275)
426 TIGR01425 SRP54_euk signal rec 55.8 10 0.00023 38.2 3.1 17 1-17 110-126 (429)
427 TIGR00962 atpA proton transloc 55.8 6.4 0.00014 40.6 1.6 12 71-82 251-262 (501)
428 COG1936 Predicted nucleotide k 55.7 6 0.00013 34.2 1.2 12 1-12 10-21 (180)
429 TIGR03263 guanyl_kin guanylate 55.6 5.2 0.00011 34.9 0.8 15 1-15 11-25 (180)
430 PRK03731 aroL shikimate kinase 55.6 6.7 0.00015 33.9 1.5 16 1-16 12-27 (171)
431 PRK13849 putative crown gall t 55.5 6.8 0.00015 36.0 1.6 18 1-18 12-29 (231)
432 COG0194 Gmk Guanylate kinase [ 55.5 6.3 0.00014 34.6 1.3 15 1-15 14-28 (191)
433 PRK13235 nifH nitrogenase redu 55.4 6.8 0.00015 37.0 1.6 17 1-17 11-27 (274)
434 PRK14721 flhF flagellar biosyn 55.4 40 0.00086 34.0 7.1 34 73-109 301-334 (420)
435 PRK08149 ATP synthase SpaL; Va 55.3 2.6 5.7E-05 42.3 -1.2 12 71-82 239-250 (428)
436 PTZ00202 tuzin; Provisional 55.1 14 0.00031 37.3 3.8 16 1-16 296-311 (550)
437 TIGR03600 phage_DnaB phage rep 55.0 13 0.00029 37.5 3.8 16 1-16 204-219 (421)
438 PF13177 DNA_pol3_delta2: DNA 55.0 20 0.00043 30.8 4.3 52 57-109 82-138 (162)
439 PRK09354 recA recombinase A; P 54.8 10 0.00022 37.1 2.8 26 57-82 121-147 (349)
440 PRK08840 replicative DNA helic 54.7 13 0.00028 38.1 3.6 17 1-17 227-243 (464)
441 cd02117 NifH_like This family 54.6 7.3 0.00016 35.2 1.6 17 1-17 10-26 (212)
442 PRK10078 ribose 1,5-bisphospho 54.6 5.9 0.00013 34.9 1.0 15 1-15 12-26 (186)
443 PRK06761 hypothetical protein; 54.6 6.6 0.00014 37.2 1.4 17 1-17 13-29 (282)
444 COG2074 2-phosphoglycerate kin 54.1 7.1 0.00015 36.0 1.4 15 1-15 99-113 (299)
445 COG3854 SpoIIIAA ncharacterize 54.1 11 0.00025 34.3 2.7 41 61-109 209-249 (308)
446 PRK08472 fliI flagellum-specif 53.9 10 0.00022 38.3 2.6 15 1-15 167-181 (434)
447 PRK11331 5-methylcytosine-spec 53.7 7.2 0.00016 39.5 1.5 17 1-17 204-220 (459)
448 PRK04182 cytidylate kinase; Pr 53.7 7 0.00015 33.9 1.4 16 1-16 10-25 (180)
449 PTZ00185 ATPase alpha subunit; 53.5 5.6 0.00012 40.8 0.7 18 63-82 281-298 (574)
450 PRK09281 F0F1 ATP synthase sub 53.4 6.4 0.00014 40.5 1.2 12 71-82 252-263 (502)
451 PLN02924 thymidylate kinase 53.4 8.1 0.00018 35.2 1.7 18 1-18 26-43 (220)
452 TIGR01968 minD_bact septum sit 53.3 7.9 0.00017 36.0 1.7 17 1-17 12-28 (261)
453 PRK13946 shikimate kinase; Pro 53.2 6.9 0.00015 34.4 1.2 17 1-17 20-36 (184)
454 PRK10751 molybdopterin-guanine 53.2 7.9 0.00017 33.7 1.6 17 1-17 16-32 (173)
455 cd00071 GMPK Guanosine monopho 53.2 6.6 0.00014 32.7 1.0 16 1-16 9-24 (137)
456 PRK06002 fliI flagellum-specif 53.0 3.2 6.9E-05 42.0 -1.1 12 71-82 252-263 (450)
457 PRK14530 adenylate kinase; Pro 53.0 7.6 0.00016 35.2 1.5 15 1-15 13-27 (215)
458 COG0714 MoxR-like ATPases [Gen 52.9 5.7 0.00012 38.7 0.7 17 1-17 53-69 (329)
459 PRK07196 fliI flagellum-specif 52.6 5.4 0.00012 40.3 0.4 12 71-82 243-254 (434)
460 PRK00300 gmk guanylate kinase; 52.3 7.4 0.00016 34.8 1.3 15 1-15 15-29 (205)
461 PRK06067 flagellar accessory p 52.1 9.4 0.0002 35.0 2.0 14 1-14 35-48 (234)
462 PHA02530 pseT polynucleotide k 52.1 7.4 0.00016 37.2 1.3 15 1-15 12-26 (300)
463 PRK14493 putative bifunctional 52.1 8.5 0.00018 36.4 1.7 19 1-19 11-29 (274)
464 TIGR03371 cellulose_yhjQ cellu 52.0 8.3 0.00018 35.5 1.6 17 1-17 12-28 (246)
465 PHA03134 thymidine kinase; Pro 52.0 7.2 0.00016 37.7 1.2 14 1-14 23-36 (340)
466 PF06745 KaiC: KaiC; InterPro 51.8 5.2 0.00011 36.5 0.2 15 1-15 29-43 (226)
467 PRK14532 adenylate kinase; Pro 51.8 8 0.00017 34.0 1.4 15 1-15 10-24 (188)
468 cd03110 Fer4_NifH_child This p 51.7 7.1 0.00015 34.1 1.0 15 1-15 10-24 (179)
469 TIGR00554 panK_bact pantothena 51.7 8.5 0.00019 36.7 1.6 17 1-17 72-88 (290)
470 PRK10733 hflB ATP-dependent me 51.4 10 0.00023 40.6 2.4 16 1-16 195-210 (644)
471 PRK11034 clpA ATP-dependent Cl 51.4 8.4 0.00018 42.0 1.7 17 1-17 217-233 (758)
472 cd01428 ADK Adenylate kinase ( 51.4 8.2 0.00018 34.0 1.4 15 1-15 9-23 (194)
473 PRK12338 hypothetical protein; 51.3 8 0.00017 37.3 1.4 15 1-15 14-28 (319)
474 PRK04220 2-phosphoglycerate ki 51.3 8.4 0.00018 36.8 1.5 15 1-15 102-116 (301)
475 PRK13231 nitrogenase reductase 51.3 6.8 0.00015 36.7 0.9 17 1-17 12-28 (264)
476 CHL00072 chlL photochlorophyll 50.7 9.3 0.0002 36.5 1.7 17 1-17 10-26 (290)
477 cd00880 Era_like Era (E. coli 50.7 6.7 0.00015 32.5 0.7 14 1-14 6-19 (163)
478 PRK15453 phosphoribulokinase; 50.7 9.3 0.0002 36.1 1.7 17 1-17 15-31 (290)
479 PRK05922 type III secretion sy 50.7 3.7 8E-05 41.4 -1.0 14 1-14 167-180 (434)
480 CHL00175 minD septum-site dete 50.5 9.3 0.0002 36.2 1.7 17 1-17 26-42 (281)
481 COG1157 FliI Flagellar biosynt 50.5 13 0.00027 37.0 2.6 21 62-82 240-262 (441)
482 PHA03135 thymidine kinase; Pro 50.5 7.9 0.00017 37.5 1.2 14 1-14 20-33 (343)
483 cd03116 MobB Molybdenum is an 50.4 10 0.00022 32.6 1.7 17 1-17 11-27 (159)
484 PF07015 VirC1: VirC1 protein; 50.4 9.8 0.00021 34.7 1.7 18 1-18 12-29 (231)
485 TIGR02173 cyt_kin_arch cytidyl 50.4 8.6 0.00019 33.0 1.4 15 1-15 10-24 (171)
486 TIGR01447 recD exodeoxyribonuc 50.2 16 0.00034 38.7 3.5 31 76-109 262-292 (586)
487 cd03111 CpaE_like This protein 50.0 11 0.00023 29.8 1.8 18 1-18 10-27 (106)
488 KOG4308 LRR-containing protein 49.7 0.64 1.4E-05 47.6 -6.7 166 297-468 87-276 (478)
489 PHA03133 thymidine kinase; Pro 49.6 8.3 0.00018 37.5 1.2 15 1-15 50-64 (368)
490 PRK05439 pantothenate kinase; 49.6 9.9 0.00021 36.6 1.7 17 1-17 96-112 (311)
491 PRK08058 DNA polymerase III su 49.5 51 0.0011 32.1 6.8 38 72-109 109-146 (329)
492 PF00154 RecA: recA bacterial 49.3 9.8 0.00021 36.8 1.7 77 1-82 63-140 (322)
493 TIGR01650 PD_CobS cobaltochela 49.2 9.1 0.0002 37.0 1.4 17 1-17 74-90 (327)
494 PRK09099 type III secretion sy 49.2 4.1 8.9E-05 41.2 -1.0 14 1-14 173-186 (441)
495 PRK10818 cell division inhibit 48.9 10 0.00022 35.7 1.7 17 1-17 13-29 (270)
496 TIGR01618 phage_P_loop phage n 48.6 6.7 0.00015 35.7 0.4 12 1-12 22-33 (220)
497 COG3640 CooC CO dehydrogenase 48.5 11 0.00024 34.4 1.7 17 1-17 10-26 (255)
498 PRK02496 adk adenylate kinase; 48.4 10 0.00022 33.3 1.5 15 1-15 11-25 (184)
499 cd03114 ArgK-like The function 48.4 11 0.00024 31.9 1.7 17 1-17 9-25 (148)
500 PRK10875 recD exonuclease V su 48.2 17 0.00038 38.6 3.4 31 76-109 268-298 (615)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-60 Score=502.53 Aligned_cols=448 Identities=30% Similarity=0.459 Sum_probs=328.4
Q ss_pred CCccchHHHHHHHHH---HHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEE
Q 047511 1 MIGETNLSVSIEMLV---NKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLL 77 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~---~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~Li 77 (471)
|+||||||+.++|+. .++|+.-.|+...|.--..++. +.|...+...+.. ....+.++.+..|.+.|++|||+|
T Consensus 189 GvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq--~~Il~~l~~~~~~-~~~~~~~~~~~~i~~~L~~krfll 265 (889)
T KOG4658|consen 189 GVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQ--QTILERLGLLDEE-WEDKEEDELASKLLNLLEGKRFLL 265 (889)
T ss_pred cccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHH--HHHHHHhccCCcc-cchhhHHHHHHHHHHHhccCceEE
Confidence 799999999999984 4567665555555532222222 2332222222222 222334789999999999999999
Q ss_pred EEecCCCCCcchhhhccccccCCCCCcEEEee-----------------------CchhHHHHHhhhcCCCCCCCCchHH
Q 047511 78 VLDDVWNENYSDWDSLSLPFEAGAPGCQIILT-----------------------KDDCLQVFTQHCLGMRDFSMQQSLK 134 (471)
Q Consensus 78 VLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT-----------------------~~ea~~Lf~~~af~~~~~~~~~~~~ 134 (471)
||||||+. .+|+.++.++|....||+|++| .+|||+||++.||.... ...+.++
T Consensus 266 vLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~ 342 (889)
T KOG4658|consen 266 VLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIE 342 (889)
T ss_pred EEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHH
Confidence 99999998 8899999999999899999999 89999999999987643 2345599
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcCCCCC-------------------CCcCCchhHHhhhccCCChhhHHHHhHhccC
Q 047511 135 DISEKIVIRCNGLPLPAKTLVGLLRGENDP-------------------LVSCDIIPALRLSYHYLSPNLKRCFAYCSLF 195 (471)
Q Consensus 135 ~~~~~iv~~c~GlPLal~~~g~~L~~~~~~-------------------~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~f 195 (471)
++|++|+++|+|+|||++++|+.|+.+... .....+..+|++||+.||++.|.||+|||.|
T Consensus 343 ~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalF 422 (889)
T KOG4658|consen 343 ELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALF 422 (889)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccC
Confidence 999999999999999999999999999875 1135778999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccC--CCCCccchhhhHHHHHHHhcc-----c
Q 047511 196 PKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSS--SDPCRFLMHDLINDLAQWAGD-----L 268 (471)
Q Consensus 196 ~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~mhdlv~~~a~~~~~-----~ 268 (471)
|+|+.|+++.++.+|+||||+.+......+++.|..++.+|++++|+.... ++...|+|||+||++|.|++. .
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~ 502 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE 502 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc
Confidence 999999999999999999999997778899999999999999999999865 456789999999999999965 1
Q ss_pred cc-c-c------cccc----------------------cccCCCcceeeeCCCC----------cCCCCcceEEEecCC-
Q 047511 269 DG-I-K------MFEP----------------------FFEFENLQTFLPLPNS----------FGDLKHLRHLDLSET- 307 (471)
Q Consensus 269 ~~-~-~------~~~~----------------------~~~~~~l~~l~~~p~~----------~~~l~~L~~L~l~~~- 307 (471)
+. + . ..+. -.+.++|++|...... |..|+.|++|||++|
T Consensus 503 e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 503 ENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 11 0 0 0111 1234456666544332 677888888888876
Q ss_pred CCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeec-Ccccccc
Q 047511 308 DIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVG-KDIGSAL 386 (471)
Q Consensus 308 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~-~~~~~~~ 386 (471)
.+.++|.+|++|.+|++|++++ +.+..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++... ......+
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l 661 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLL 661 (889)
T ss_pred ccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhH
Confidence 5678888888888888888888 6788888888888888888888886666665555568888888766543 2223445
Q ss_pred cccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeec
Q 047511 387 QELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 465 (471)
Q Consensus 387 ~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 465 (471)
.++. +.+|+ .+.+.... . .....+..+..|.++...-.. ........+..+..+.+|++|.+.++.
T Consensus 662 ~el~~Le~L~-~ls~~~~s----~--~~~e~l~~~~~L~~~~~~l~~------~~~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 662 KELENLEHLE-NLSITISS----V--LLLEDLLGMTRLRSLLQSLSI------EGCSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred Hhhhcccchh-hheeecch----h--HhHhhhhhhHHHHHHhHhhhh------cccccceeecccccccCcceEEEEcCC
Confidence 5555 66665 55553211 1 111223333444332221110 001223345566667888888888887
Q ss_pred CCC
Q 047511 466 GTK 468 (471)
Q Consensus 466 ~~~ 468 (471)
+..
T Consensus 729 ~~e 731 (889)
T KOG4658|consen 729 ISE 731 (889)
T ss_pred Cch
Confidence 764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-48 Score=431.61 Aligned_cols=421 Identities=20% Similarity=0.227 Sum_probs=282.8
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHH--HHH--HHhh---------hHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFS--LQE--QIQS---------DLKKWKKILVFIATADQPVNGTDELGLLQEKLK 67 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~--lq~--~~l~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (471)
||||||||+++|+++..+|+..+++.. +.. .... .+..++.+...+.... ....... ..++
T Consensus 217 GiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~--~~~~~~~----~~~~ 290 (1153)
T PLN03210 217 GIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK--DIKIYHL----GAME 290 (1153)
T ss_pred CCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCC--CcccCCH----HHHH
Confidence 899999999999999988866544321 000 0000 0000111111111110 0011111 3578
Q ss_pred HHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee----------------------CchhHHHHHhhhcCCC
Q 047511 68 NQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT----------------------KDDCLQVFTQHCLGMR 125 (471)
Q Consensus 68 ~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT----------------------~~ea~~Lf~~~af~~~ 125 (471)
++|++||+||||||||+. .+|+.+.....|+++||||||| ++|||+||+++||+..
T Consensus 291 ~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~ 368 (1153)
T PLN03210 291 ERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN 368 (1153)
T ss_pred HHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence 889999999999999765 8999999888899999999999 5789999999999875
Q ss_pred CCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCCC-----------CcCCchhHHhhhccCCCh-hhHHHHhHhc
Q 047511 126 DFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDPL-----------VSCDIIPALRLSYHYLSP-NLKRCFAYCS 193 (471)
Q Consensus 126 ~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~-----------~~~~i~~~l~~sy~~L~~-~~k~~fl~~~ 193 (471)
.+++++++++++|+++|+|+|||++++|+.|++++..+ ...+|.++|++||++|++ .+|.||+++|
T Consensus 369 --~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia 446 (1153)
T PLN03210 369 --SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIA 446 (1153)
T ss_pred --CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheeh
Confidence 45678999999999999999999999999999987642 334688999999999976 5999999999
Q ss_pred cCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccCCCCCccchhhhHHHHHHHhcccccc--
Q 047511 194 LFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSSSDPCRFLMHDLINDLAQWAGDLDGI-- 271 (471)
Q Consensus 194 ~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mhdlv~~~a~~~~~~~~~-- 271 (471)
+||.+..++ .+..|.+.+.... +..++.|+++||++... .+++|||++|+||+++...+..
T Consensus 447 ~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~ 509 (1153)
T PLN03210 447 CLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEP 509 (1153)
T ss_pred hhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCC
Confidence 999987643 3556666554322 12388999999998753 3699999999999988422100
Q ss_pred ---------------------------------------ccccccccCCCcceeee--------------CCCCcCCCC-
Q 047511 272 ---------------------------------------KMFEPFFEFENLQTFLP--------------LPNSFGDLK- 297 (471)
Q Consensus 272 ---------------------------------------~~~~~~~~~~~l~~l~~--------------~p~~~~~l~- 297 (471)
.....|..|++|+.|.. +|+.+..++
T Consensus 510 ~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~ 589 (1153)
T PLN03210 510 GEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589 (1153)
T ss_pred CcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCc
Confidence 00113556777776643 344454443
Q ss_pred cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCee
Q 047511 298 HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFV 377 (471)
Q Consensus 298 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~ 377 (471)
+|+.|++.++.++.+|..+ .+.+|+.|++++ +.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++..
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 4777777777777777766 457777777777 35677777777777777777777766677763 66777777776654
Q ss_pred ecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCc
Q 047511 378 VGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNL 456 (471)
Q Consensus 378 ~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L 456 (471)
+..- ...+..++ +.+|+ .|.+.++.... .+|..+ ++++|+.|++++|.. ...+|+. +++|
T Consensus 667 c~~L-~~lp~si~~L~~L~-~L~L~~c~~L~----~Lp~~i-~l~sL~~L~Lsgc~~---------L~~~p~~---~~nL 727 (1153)
T PLN03210 667 CSSL-VELPSSIQYLNKLE-DLDMSRCENLE----ILPTGI-NLKSLYRLNLSGCSR---------LKSFPDI---STNI 727 (1153)
T ss_pred CCCc-cccchhhhccCCCC-EEeCCCCCCcC----ccCCcC-CCCCCCEEeCCCCCC---------ccccccc---cCCc
Confidence 3321 22344455 66666 66665533322 223323 566777777765541 1112211 2356
Q ss_pred ceEEEEeecCCCCC
Q 047511 457 ERFCISGYGGTKCR 470 (471)
Q Consensus 457 ~~L~L~~~~~~~~P 470 (471)
++|+|++|.+..+|
T Consensus 728 ~~L~L~~n~i~~lP 741 (1153)
T PLN03210 728 SWLDLDETAIEEFP 741 (1153)
T ss_pred CeeecCCCcccccc
Confidence 66666666665555
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=4.9e-33 Score=266.99 Aligned_cols=213 Identities=30% Similarity=0.553 Sum_probs=154.3
Q ss_pred CCccchHHHHHHHH--HHHhhhhHHHHHHHHHH-HhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEE
Q 047511 1 MIGETNLSVSIEML--VNKLASEAILLFSLQEQ-IQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLL 77 (471)
Q Consensus 1 ~iGKTtLA~~v~~~--~~~~~~~~~~~~~lq~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~Li 77 (471)
|+||||||+++|++ ++..|+. .+|+.+.+. ...++. ..+...+...........+.++....+++.|+++|+||
T Consensus 29 G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~Ll 105 (287)
T PF00931_consen 29 GIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLL--EQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLL 105 (287)
T ss_dssp TSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHH--HHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEE
T ss_pred cCCcceeeeeccccccccccccc-cccccccccccccccc--ccccccccccccccccccccccccccchhhhcccccee
Confidence 89999999999999 6667743 333333221 112222 22322333332223356788889999999999999999
Q ss_pred EEecCCCCCcchhhhccccccCCCCCcEEEee-----------------------CchhHHHHHhhhcCCCCCCCCchHH
Q 047511 78 VLDDVWNENYSDWDSLSLPFEAGAPGCQIILT-----------------------KDDCLQVFTQHCLGMRDFSMQQSLK 134 (471)
Q Consensus 78 VLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT-----------------------~~ea~~Lf~~~af~~~~~~~~~~~~ 134 (471)
||||||+. .+|+.+...++.+..||+|||| .+||++||++.++... ....+..+
T Consensus 106 VlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~ 182 (287)
T PF00931_consen 106 VLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLE 182 (287)
T ss_dssp EEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSC
T ss_pred eeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 99999876 7999999888888889999999 7899999999998655 22345567
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcCCCCC------------------CCcCCchhHHhhhccCCChhhHHHHhHhccCC
Q 047511 135 DISEKIVIRCNGLPLPAKTLVGLLRGENDP------------------LVSCDIIPALRLSYHYLSPNLKRCFAYCSLFP 196 (471)
Q Consensus 135 ~~~~~iv~~c~GlPLal~~~g~~L~~~~~~------------------~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~f~ 196 (471)
+.+++|+++|+|+|||++++|++|+.+... .....+..++..||+.||++.|+||++||+||
T Consensus 183 ~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~ 262 (287)
T PF00931_consen 183 DLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFP 262 (287)
T ss_dssp THHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCC
Confidence 889999999999999999999999554322 12456888999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHCCCCCCC
Q 047511 197 KNYEFHEEEVTLLWMAEGFPYHI 219 (471)
Q Consensus 197 ~~~~i~~~~l~~~w~~~g~~~~~ 219 (471)
+++.|+++.++++|.++|++...
T Consensus 263 ~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 263 EGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TTS-EEHHHHHHHHTT-HHTC--
T ss_pred CCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999998763
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=4.2e-18 Score=142.03 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=140.0
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
.+.++.+.+.|-|++|+++.+|+.|..|.+|+.|++++ +.+.++|.++++|++|++|+++-| .+..+|.+||.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 35567888899999999999999999999999999997 689999999999999999999999 8888999999999999
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccC
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDML 450 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 450 (471)
.|++..+..+....+..+- ++.|+ .|.+.+ +-.+.+|..++++++|+.|.++.|+ ...+|..+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlr-alyl~d-----ndfe~lp~dvg~lt~lqil~lrdnd----------ll~lpkei 169 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLR-ALYLGD-----NDFEILPPDVGKLTNLQILSLRDND----------LLSLPKEI 169 (264)
T ss_pred hhhccccccccccCCcchhHHHHHH-HHHhcC-----CCcccCChhhhhhcceeEEeeccCc----------hhhCcHHH
Confidence 9999877766556666666 88888 777765 3446678889999999999997554 45678888
Q ss_pred CCCCCcceEEEEeecCCCCC
Q 047511 451 KPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 451 ~~~~~L~~L~L~~~~~~~~P 470 (471)
..+..|++|++.||+++.+|
T Consensus 170 g~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHHhcccceeeecC
Confidence 88999999999999998877
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=1.5e-14 Score=161.71 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=100.9
Q ss_pred cccCCCcceee--------eCCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccCC
Q 047511 277 FFEFENLQTFL--------PLPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLH 347 (471)
Q Consensus 277 ~~~~~~l~~l~--------~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 347 (471)
+.++++|+.|. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 44455555553 23455556666666666666555 4555666666666666666555555666666666666
Q ss_pred eeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccce
Q 047511 348 HLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTL 426 (471)
Q Consensus 348 ~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L 426 (471)
+|++++|...+.+|..++++++|++|++..+... +..+..+. +.+|+ .|.+++ +.+.+..|..+.++++|+.|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~-~L~Ls~----n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLI-SLDLSD----NSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeee-ccCchhHhhccCcC-EEECcC----CeeccCCChhHcCCCCCcEE
Confidence 6666666444455555666666666655433321 22233444 55555 555543 23344455666667777777
Q ss_pred EEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 427 LLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 427 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
++++|. .....+..+..+++|++|+|++|.+.
T Consensus 314 ~l~~n~---------~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 314 HLFSNN---------FTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECCCCc---------cCCcCChhHhcCCCCCEEECcCCCCc
Confidence 776554 33345566677788888888888765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=9.4e-16 Score=151.06 Aligned_cols=182 Identities=24% Similarity=0.277 Sum_probs=137.0
Q ss_pred cccccccccCCCcceee---------eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhh-
Q 047511 271 IKMFEPFFEFENLQTFL---------PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDM- 340 (471)
Q Consensus 271 ~~~~~~~~~~~~l~~l~---------~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~- 340 (471)
......++.++.||++. -+|+.+..|..|+.|||++|++++.|..+.+-.++-+|+||+ +++..+|..+
T Consensus 68 ~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lf 146 (1255)
T KOG0444|consen 68 ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLF 146 (1255)
T ss_pred HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHH
Confidence 34445667777777765 258889999999999999999999999999999999999998 5788888764
Q ss_pred hccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCC
Q 047511 341 GNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNG 419 (471)
Q Consensus 341 ~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~ 419 (471)
-+|+.|-+||+++| .+..+|+.+..|..|++|.++++... -..+..++ |+.|. .|.+++ .+.-..-+|.++.+
T Consensus 147 inLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~-vLhms~---TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLS-VLHMSN---TQRTLDNIPTSLDD 220 (1255)
T ss_pred HhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhh-hhhccc---ccchhhcCCCchhh
Confidence 58899999999999 88999999999999999988766544 23355555 55554 444443 33334456777888
Q ss_pred cccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCC
Q 047511 420 KKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 420 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
+.+|..+++|.|+ ...+|+.+-.+++|+.|.||+|.++.+
T Consensus 221 l~NL~dvDlS~N~----------Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 221 LHNLRDVDLSENN----------LPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hhhhhhccccccC----------CCcchHHHhhhhhhheeccCcCceeee
Confidence 8888888888665 234566666677777777777776654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=2.3e-14 Score=160.12 Aligned_cols=177 Identities=21% Similarity=0.231 Sum_probs=139.8
Q ss_pred ccccCCCcceee--------eCCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFL--------PLPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~--------~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+.++++|+.|. .+|..++++++|+.|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 466777888775 24778889999999999999988 788899999999999999987778899999999999
Q ss_pred CeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccc
Q 047511 347 HHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKT 425 (471)
Q Consensus 347 ~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~ 425 (471)
++|++++|...+.+|..++++++|++|++..+... +..+..+. +.+|+ .|.+.+ +...+..|..++++++|+.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~-~L~l~~----n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLE-ILHLFS----NNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCc-EEECCC----CccCCcCChhHhcCCCCCE
Confidence 99999999666778888999999999987655432 23344455 67777 676655 3455566777889999999
Q ss_pred eEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 426 LLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 426 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
|+++.|. ....++..+..+++|+.|+|++|.+.
T Consensus 337 L~L~~n~---------l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 337 LQLWSNK---------FSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred EECcCCC---------CcCcCChHHhCCCCCcEEECCCCeeE
Confidence 9998665 33456677778889999999988765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=1.9e-14 Score=142.01 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=146.3
Q ss_pred cceeeeCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc
Q 047511 283 LQTFLPLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK 362 (471)
Q Consensus 283 l~~l~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~ 362 (471)
-|++..+|.++..|.+|+.+|++.|.+..+|+.+-++++|+.|+||+ +.++++.-.++...+|+.|+++.| ++..+|.
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~ 285 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRN-QLTVLPD 285 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccc-hhccchH
Confidence 35667889999999999999999999999999999999999999999 689999999999999999999999 9999999
Q ss_pred cccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcc
Q 047511 363 GMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPE 441 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 441 (471)
.+.+|+.|+.|...++...-...++.+| +.+|. .+... +|..+..|..++.|..|+.|.|+.|.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le-vf~aa-----nN~LElVPEglcRC~kL~kL~L~~Nr--------- 350 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE-VFHAA-----NNKLELVPEGLCRCVKLQKLKLDHNR--------- 350 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhH-HHHhh-----ccccccCchhhhhhHHHHHhcccccc---------
Confidence 9999999999987666554445566777 77666 44433 35667888999999999999997664
Q ss_pred hHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 442 IETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 442 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
...+|++++-++.|+.|||..|+-..+|
T Consensus 351 -LiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 351 -LITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred -eeechhhhhhcCCcceeeccCCcCccCC
Confidence 5678999999999999999999876665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=3.2e-14 Score=133.79 Aligned_cols=162 Identities=27% Similarity=0.271 Sum_probs=124.9
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
.+|++++.+..|..|+..+|++..+|+.+.++..|..|++.+ +.+..+|+..-+|++|++||...| .++.+|+.+|.|
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcch
Confidence 457788888888888888888888888888888888888888 567777777777888888888888 888888888888
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcC-CcccccceEEEecCCCCCCCCcchHHH
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLN-GKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
.+|..|++..+... .+++++ ...|. ++.+. .+..+.+|+... ++.+|..|+|+.|. ..+
T Consensus 206 ~~L~~LyL~~Nki~---~lPef~gcs~L~-Elh~g-----~N~i~~lpae~~~~L~~l~vLDLRdNk----------lke 266 (565)
T KOG0472|consen 206 ESLELLYLRRNKIR---FLPEFPGCSLLK-ELHVG-----ENQIEMLPAEHLKHLNSLLVLDLRDNK----------LKE 266 (565)
T ss_pred hhhHHHHhhhcccc---cCCCCCccHHHH-HHHhc-----ccHHHhhHHHHhcccccceeeeccccc----------ccc
Confidence 88888877655432 445666 55555 45444 245667777665 78889999997554 456
Q ss_pred hhccCCCCCCcceEEEEeecCCCCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+|++++-+.+|++||+++|-++.+|
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCC
Confidence 8888888889999999999998887
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=3.6e-13 Score=112.74 Aligned_cols=137 Identities=23% Similarity=0.285 Sum_probs=95.1
Q ss_pred eeCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCC-CccCccccc
Q 047511 287 LPLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDA-SEEIPKGMG 365 (471)
Q Consensus 287 ~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~-~~~lP~~~~ 365 (471)
..+|+.+..+.+|.+|++++|+++++|.+|+.++.|+.|+++- +.+..+|.+|+.++-|++||+.+|.. -..+|..|.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 4568888888888888888888888888888888888888876 57778888888888888888887732 224676677
Q ss_pred CCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 366 KLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.++.|+-|.+..+... ..+.+++ +++|+ -|.+.+ ++ .-.+|..++.+..|++|++.+|.
T Consensus 125 ~m~tlralyl~dndfe--~lp~dvg~lt~lq-il~lrd----nd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFE--ILPPDVGKLTNLQ-ILSLRD----ND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHhcCCCcc--cCChhhhhhccee-EEeecc----Cc-hhhCcHHHHHHHHHHHHhcccce
Confidence 7777777766544432 2345555 65555 444433 22 22356667778888888886554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.16 E-value=9.9e-11 Score=132.07 Aligned_cols=88 Identities=31% Similarity=0.442 Sum_probs=70.3
Q ss_pred CCCCcCCCCcceEEEecCCC-CCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 289 LPNSFGDLKHLRHLDLSETD-IQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
+|..+..+++|++|+|+++. ++.+| .++.+++|+.|++++|..+..+|..++++++|+.|++++|..+..+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 35667778888888888764 56666 47788889999998888888899999999999999999888888888766 67
Q ss_pred CCCcccCCeee
Q 047511 368 ACLLTLCSFVV 378 (471)
Q Consensus 368 ~~L~~L~~~~~ 378 (471)
++|++|++..+
T Consensus 704 ~sL~~L~Lsgc 714 (1153)
T PLN03210 704 KSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCC
Confidence 78877766543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-10 Score=114.74 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=110.2
Q ss_pred CCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCc-ccccCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIP-KGMGKL 367 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP-~~~~~l 367 (471)
++|..=.++++|+|++|+|+.+ -..|.++.+|.+|.|+. +.++.+|. .|.+|++|+.|++..| .++.+- -.|..|
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL 244 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCc
Confidence 3455556788888988888876 35678888888888888 56777765 4556888999998888 666552 237788
Q ss_pred CCCcccCCeeecCcc--cccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 368 ACLLTLCSFVVGKDI--GSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~--~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
++|+.|.+..+.... ...+-. +.++. .|.+.. +.+...-..++-+++.|+.|+||+|. +..-
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~--l~kme-~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~Na---------I~ri 308 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYG--LEKME-HLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNA---------IQRI 308 (873)
T ss_pred hhhhhhhhhhcCcccccCcceee--ecccc-eeeccc----chhhhhhcccccccchhhhhccchhh---------hhee
Confidence 888888765443321 001111 33333 333332 23334444668888999999999776 4555
Q ss_pred hhccCCCCCCcceEEEEeecCCCCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
-++++.-+++|+.|+|+.|+++.+|
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred ecchhhhcccceeEeccccccccCC
Confidence 5677777889999999999998876
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.00 E-value=6.6e-12 Score=118.39 Aligned_cols=160 Identities=22% Similarity=0.306 Sum_probs=80.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
|+.++.+..++.|+.++|++.++|+.++.+.+|..|+.++ +.+.++|++++.+..|..++..+| .+.++|++++++.+
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSK 161 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHH
Confidence 4444444444444444444444554444444444444444 344444444555444444444444 44445554444444
Q ss_pred CcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhc
Q 047511 370 LLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLD 448 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 448 (471)
|..|++..+... ..+++.- +..|+ .+... .+..+.+|..++++.+|..|+|..|+ ....+
T Consensus 162 l~~l~~~~n~l~--~l~~~~i~m~~L~-~ld~~-----~N~L~tlP~~lg~l~~L~~LyL~~Nk-----------i~~lP 222 (565)
T KOG0472|consen 162 LSKLDLEGNKLK--ALPENHIAMKRLK-HLDCN-----SNLLETLPPELGGLESLELLYLRRNK-----------IRFLP 222 (565)
T ss_pred HHHhhccccchh--hCCHHHHHHHHHH-hcccc-----hhhhhcCChhhcchhhhHHHHhhhcc-----------cccCC
Confidence 444433221110 1111111 33333 33222 34556677777777777777776554 22334
Q ss_pred cCCCCCCcceEEEEeecCCCCC
Q 047511 449 MLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 449 ~l~~~~~L~~L~L~~~~~~~~P 470 (471)
++..|+.|++|+++.|.+..+|
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhH
Confidence 6666777777777777766554
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=8e-11 Score=116.01 Aligned_cols=164 Identities=21% Similarity=0.191 Sum_probs=97.1
Q ss_pred CCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
+.|..|.+++.|+|..|++..+- ..+.+|+.|+.|++++|..-..-++++...++|+.|++++| .+.++|++ +..|.
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLS 341 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHH
Confidence 34555666666666666666553 35667777777777775444444566666777788888777 77777765 77777
Q ss_pred CCcccCCeeecCcccccccc--cc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 369 CLLTLCSFVVGKDIGSALQE--LK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 369 ~L~~L~~~~~~~~~~~~~~~--l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
.|++|.+..++.. .+.+ +. +.+|+ +|.+....-.-.+.+ ....|.++++|+.|.|.+|. ...+..
T Consensus 342 ~Le~LnLs~Nsi~---~l~e~af~~lssL~-~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNq------lk~I~k- 409 (873)
T KOG4194|consen 342 QLEELNLSHNSID---HLAEGAFVGLSSLH-KLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQ------LKSIPK- 409 (873)
T ss_pred HhhhhcccccchH---HHHhhHHHHhhhhh-hhcCcCCeEEEEEec-chhhhccchhhhheeecCce------eeecch-
Confidence 7777776655433 1221 22 44554 444433111000111 23447778888888887665 222222
Q ss_pred hhccCCCCCCcceEEEEeecCCCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
.++..+++|+.|+|.+|.+.++
T Consensus 410 --rAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 410 --RAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred --hhhccCcccceecCCCCcceee
Confidence 3445566888888888877654
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=5.1e-11 Score=117.13 Aligned_cols=133 Identities=26% Similarity=0.361 Sum_probs=87.5
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
.+|..+.++..|++|+|+.|++..+|..++.|+ |+.|.+++ ++++.+|..++.+..|.+||.+.| .+..+|..++.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhH
Confidence 347777777777777777777777777777765 77777776 577777777777777777777777 777777777777
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.+|+.|....+.. ...+.++. ++ |. .|.+++ |-...+|..|.+|++|++|-|.+|+
T Consensus 189 ~slr~l~vrRn~l--~~lp~El~~Lp-Li-~lDfSc-----Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 189 TSLRDLNVRRNHL--EDLPEELCSLP-LI-RLDFSC-----NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHhhhhh--hhCCHHHhCCc-ee-eeeccc-----CceeecchhhhhhhhheeeeeccCC
Confidence 7777775433221 12333444 22 22 344443 2334466677777777777776665
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=5.9e-08 Score=108.14 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcC--CCcEEEEEecCCCCCcchhhhcccc-ccCCCCCcEEEee---------------------------
Q 047511 60 GLLQEKLKNQMS--RKKFLLVLDDVWNENYSDWDSLSLP-FEAGAPGCQIILT--------------------------- 109 (471)
Q Consensus 60 ~~~~~~l~~~L~--~kr~LiVLDDVw~~~~~~~~~l~~~-~~~~~~gsriiiT--------------------------- 109 (471)
......+-..+. +.+++|||||+-.-+......+... +....++.++|||
T Consensus 106 ~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~ 185 (903)
T PRK04841 106 SSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLA 185 (903)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCC
Confidence 333333444443 6899999999943322222222222 2223445666666
Q ss_pred --CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCCC----------CcCCchhHHhhh
Q 047511 110 --KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDPL----------VSCDIIPALRLS 177 (471)
Q Consensus 110 --~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~----------~~~~i~~~l~~s 177 (471)
.+|+.++|....... --.+...++.+.|+|.|+++..++..+....... ....+...+...
T Consensus 186 f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (903)
T PRK04841 186 FDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEE 258 (903)
T ss_pred CCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHH
Confidence 355666665443111 1124577899999999999999998876544310 123455555444
Q ss_pred -ccCCChhhHHHHhHhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCccc-ccCCCCCccchh
Q 047511 178 -YHYLSPNLKRCFAYCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQ-QSSSDPCRFLMH 255 (471)
Q Consensus 178 -y~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~-~~~~~~~~~~mh 255 (471)
++.||++.++.++..|+++ .++..-+-... | . +.+...+++|.+.+++. ..+++...|++|
T Consensus 259 v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~---~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H 321 (903)
T PRK04841 259 VLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G---E--------ENGQMRLEELERQGLFIQRMDDSGEWFRYH 321 (903)
T ss_pred HHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C---C--------CcHHHHHHHHHHCCCeeEeecCCCCEEehh
Confidence 7999999999999999986 33333222111 1 1 23466799999999965 344444568899
Q ss_pred hhHHHHHHHh
Q 047511 256 DLINDLAQWA 265 (471)
Q Consensus 256 dlv~~~a~~~ 265 (471)
++++++.+..
T Consensus 322 ~L~r~~l~~~ 331 (903)
T PRK04841 322 PLFASFLRHR 331 (903)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=4.8e-10 Score=116.16 Aligned_cols=157 Identities=24% Similarity=0.231 Sum_probs=95.1
Q ss_pred CCCCcCCCCcceEEEecCCCCCcCCccccC--------------------------CCCCcEEEccCCCcccccchhhhc
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQILPESVNT--------------------------LYNLRTLMLQKCNQLAKMCSDMGN 342 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~--------------------------l~~L~~L~l~~~~~~~~lP~~~~~ 342 (471)
+|+...++++|+.|+|..|+|..+|+.+-. +..|+.|.+.+|......-+.+.+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 377777788888888888877777763211 112333444443333333334667
Q ss_pred cccCCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc--cccccCceEEcccCCCCChhhhHHhhcCC
Q 047511 343 LLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK--LLHLHGALEISKLENVRDVSEAREAQLNG 419 (471)
Q Consensus 343 l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~ 419 (471)
.++|++|++++| .+.++|.. +.++..|++|.++.+ .+..++ ..++. .|...... .|....+| .+..
T Consensus 382 ~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN------kL~~Lp~tva~~~-~L~tL~ah--sN~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 382 FKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN------KLTTLPDTVANLG-RLHTLRAH--SNQLLSFP-ELAQ 450 (1081)
T ss_pred ccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc------hhhhhhHHHHhhh-hhHHHhhc--CCceeech-hhhh
Confidence 788888888888 88888876 778888888876433 333333 22222 22221111 23444566 6888
Q ss_pred cccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeec
Q 047511 420 KKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 465 (471)
Q Consensus 420 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 465 (471)
++.|+.+|+++|+ .........-|-++|++|||+||.
T Consensus 451 l~qL~~lDlS~N~---------L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNN---------LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccch---------hhhhhhhhhCCCcccceeeccCCc
Confidence 8889999998776 333333333334789999999886
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=8.2e-10 Score=104.29 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=50.1
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDV 354 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~ 354 (471)
|..|+.+++||.|||++|.|+.| |.+|.+|.+|..|-+-+++.++.+|.. |++|.+|+.|.+.-|
T Consensus 84 ~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 84 PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 56788999999999999999977 788999999988888887888888874 444555555444444
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.79 E-value=3.4e-10 Score=117.20 Aligned_cols=161 Identities=25% Similarity=0.224 Sum_probs=114.4
Q ss_pred CCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCC
Q 047511 296 LKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCS 375 (471)
Q Consensus 296 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~ 375 (471)
-.+|+++++++|+++.+|+.++.+.+|+.+++.+ +.+..+|..+..+++|+.|.+..| .+..+|+..+.+++|++|++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 4579999999999999999999999999999998 567999999999999999999999 88899998889999999987
Q ss_pred eeecCccccccccccccc--cc----------------C----ceEEcccCCCCChhhhHHhhcCCcccccceEEEecCC
Q 047511 376 FVVGKDIGSALQELKLLH--LH----------------G----ALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSN 433 (471)
Q Consensus 376 ~~~~~~~~~~~~~l~l~~--L~----------------~----~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 433 (471)
..+...+... ..+...+ |+ + .|....+.+ +.+.+.....|.++++|+.|+|++|.
T Consensus 318 ~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNr- 394 (1081)
T KOG0618|consen 318 QSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNR- 394 (1081)
T ss_pred hhccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecccc-
Confidence 6554332000 0000000 00 0 011111111 22334444558889999999999886
Q ss_pred CCCCCCcchHHHhhcc-CCCCCCcceEEEEeecCCCCC
Q 047511 434 NGDSREPEIETHVLDM-LKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 434 ~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~P 470 (471)
...+|++ +.+++.|+.|+||||.++++|
T Consensus 395 ---------L~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 395 ---------LNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ---------cccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 1123333 556778899999999888877
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=1.8e-08 Score=107.35 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=64.4
Q ss_pred cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCee
Q 047511 298 HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFV 377 (471)
Q Consensus 298 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~ 377 (471)
+|+.|++++|.+..+|..+. .+|+.|++++ +.+..+|..+. .+|++|++++| .+..+|..+. ++|+.|++..
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC
Confidence 45555555555555554443 3455555554 34445554433 35555555555 4445554332 2444444433
Q ss_pred ecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcc
Q 047511 378 VGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLE 457 (471)
Q Consensus 378 ~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 457 (471)
+.... .+..+ ..+|+ .|.+.+. .+. .+|..+. ++|+.|+++.|.. . .+|..+ +++|+
T Consensus 314 N~Lt~--LP~~l-~~sL~-~L~Ls~N----~Lt-~LP~~l~--~sL~~L~Ls~N~L------~----~LP~~l--p~~L~ 370 (754)
T PRK15370 314 NSLTA--LPETL-PPGLK-TLEAGEN----ALT-SLPASLP--PELQVLDVSKNQI------T----VLPETL--PPTIT 370 (754)
T ss_pred Ccccc--CCccc-cccce-eccccCC----ccc-cCChhhc--CcccEEECCCCCC------C----cCChhh--cCCcC
Confidence 22210 00000 12333 3333331 111 1233332 4677777776541 1 122222 24677
Q ss_pred eEEEEeecCCCCC
Q 047511 458 RFCISGYGGTKCR 470 (471)
Q Consensus 458 ~L~L~~~~~~~~P 470 (471)
+|+|++|.+..+|
T Consensus 371 ~LdLs~N~Lt~LP 383 (754)
T PRK15370 371 TLDVSRNALTNLP 383 (754)
T ss_pred EEECCCCcCCCCC
Confidence 7777777766665
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.5e-09 Score=105.45 Aligned_cols=161 Identities=21% Similarity=0.184 Sum_probs=122.3
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
.+|..+.-+-.|..+.|+.|.+..+|+.+++|..|.+||++. +.+..+|..++.|+ |+.|-+++| +++.+|++++.+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 347777777788888888999999999999999999999988 57888998888875 888888888 888899999888
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHh
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHV 446 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 446 (471)
..|..|+.+.+.. .+.+.+++ +..|+ .|.+.. +-...+|..+..+ .|..|++++|+ ...+
T Consensus 166 ~tl~~ld~s~nei--~slpsql~~l~slr-~l~vrR-----n~l~~lp~El~~L-pLi~lDfScNk----------is~i 226 (722)
T KOG0532|consen 166 PTLAHLDVSKNEI--QSLPSQLGYLTSLR-DLNVRR-----NHLEDLPEELCSL-PLIRLDFSCNK----------ISYL 226 (722)
T ss_pred hhHHHhhhhhhhh--hhchHHhhhHHHHH-HHHHhh-----hhhhhCCHHHhCC-ceeeeecccCc----------eeec
Confidence 8888887654432 34566677 77777 565544 2233455667744 48888888776 2346
Q ss_pred hccCCCCCCcceEEEEeecCCCCC
Q 047511 447 LDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 447 ~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
|-.+..++.|++|-|.+|++.+.|
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCCh
Confidence 777788889999999999888766
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.5e-08 Score=88.36 Aligned_cols=104 Identities=27% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCCCcceEEEecCCCCCcCCcccc-CCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccccc-CCCCCc
Q 047511 294 GDLKHLRHLDLSETDIQILPESVN-TLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMG-KLACLL 371 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~-~l~~L~ 371 (471)
.+...++.|+|++|.|+.+. .++ .+.+|+.|++++ +.++.++ .+..+++|+.|++++| .+..+++++. .+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 34445677777777777653 344 466777777777 4566664 4667777777777777 6666655543 567777
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcc
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~ 402 (471)
+|.+..+.......+..+. +++|+ .|.+.+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~-~L~L~~ 122 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLR-VLSLEG 122 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT---EEE-TT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcc-eeeccC
Confidence 7765444433222333333 44444 444443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=9.2e-08 Score=101.94 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=86.8
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCe
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
++|+.|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++| .+..+|..+. ++|++|++.
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY 291 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECC
Confidence 467788888888777776554 36778888874 4667777664 47888888877 6667777654 467777665
Q ss_pred eecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCc
Q 047511 377 VVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNL 456 (471)
Q Consensus 377 ~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L 456 (471)
.+.... .+..++ ..|. .|.+.+ +.+. .+|..+ .++|+.|+++.|.. ..+|..+ +++|
T Consensus 292 ~N~Lt~--LP~~lp-~sL~-~L~Ls~----N~Lt-~LP~~l--~~sL~~L~Ls~N~L----------t~LP~~l--~~sL 348 (754)
T PRK15370 292 DNSIRT--LPAHLP-SGIT-HLNVQS----NSLT-ALPETL--PPGLKTLEAGENAL----------TSLPASL--PPEL 348 (754)
T ss_pred CCcccc--Ccccch-hhHH-HHHhcC----Cccc-cCCccc--cccceeccccCCcc----------ccCChhh--cCcc
Confidence 443221 111111 2233 333433 1121 122222 25788888886651 1234333 3689
Q ss_pred ceEEEEeecCCCCC
Q 047511 457 ERFCISGYGGTKCR 470 (471)
Q Consensus 457 ~~L~L~~~~~~~~P 470 (471)
+.|+|++|.+..+|
T Consensus 349 ~~L~Ls~N~L~~LP 362 (754)
T PRK15370 349 QVLDVSKNQITVLP 362 (754)
T ss_pred cEEECCCCCCCcCC
Confidence 99999999998776
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=2.8e-08 Score=96.68 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=96.1
Q ss_pred CcceEEEecCCCCC-----cCCccccCC-CCCcEEEccCCCcc----cccchhhhccccCCeeecCCCCCCc----cCcc
Q 047511 297 KHLRHLDLSETDIQ-----ILPESVNTL-YNLRTLMLQKCNQL----AKMCSDMGNLLKLHHLDNSDVDASE----EIPK 362 (471)
Q Consensus 297 ~~L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~----~~lP~~~~~l~~L~~L~l~~~~~~~----~lP~ 362 (471)
++|+.|++++|++. .+...+..+ ++|+.|++++|... ..++..+..+++|++|++++|...+ .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 34888888888776 233455666 78888888887543 2445566677788888888883321 2444
Q ss_pred cccCCCCCcccCCeeecCccc---ccccccc-cccccCceEEcccCCCCChhhhHHhhc-----CCcccccceEEEecCC
Q 047511 363 GMGKLACLLTLCSFVVGKDIG---SALQELK-LLHLHGALEISKLENVRDVSEAREAQL-----NGKKNLKTLLLQWTSN 433 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~~~~~~---~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~ 433 (471)
.+..+++|++|++..+..... .....+. +++|+ .|.+++.. +.+.....+ ...+.|++|++++|..
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~-~L~ls~n~----l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE-VLNLGDNN----LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC-EEecCCCc----CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 455667888887765543211 1112233 55566 66666522 222111111 1246888888887751
Q ss_pred CCCCCCcchHHHhhccCCCCCCcceEEEEeecCCC
Q 047511 434 NGDSREPEIETHVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
.......+.+.+..+++|++|++++|.+..
T Consensus 263 -----~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 263 -----TDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred -----CcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 111223444555556789999998887763
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=3.2e-08 Score=96.25 Aligned_cols=172 Identities=18% Similarity=0.100 Sum_probs=112.6
Q ss_pred CCCcCCCCcceEEEecCCCCC-cCCccccCCCC---CcEEEccCCCcc----cccchhhhcc-ccCCeeecCCCCCCc--
Q 047511 290 PNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYN---LRTLMLQKCNQL----AKMCSDMGNL-LKLHHLDNSDVDASE-- 358 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~---L~~L~l~~~~~~----~~lP~~~~~l-~~L~~L~l~~~~~~~-- 358 (471)
+..+..+++|+.|++++|.+. ..+..+..+.+ |+.|++++|... ..++..+..+ ++|+.|++++|....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 445677899999999999987 45566665555 999999997543 2344566777 899999999994332
Q ss_pred --cCcccccCCCCCcccCCeeecCccc---ccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 359 --EIPKGMGKLACLLTLCSFVVGKDIG---SALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 359 --~lP~~~~~l~~L~~L~~~~~~~~~~---~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.++..+..+++|++|++..+..... .....+. ..+|+ .|.+.+..-.......+...+..+++|+.|++++|.
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE-VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC-EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 3444567788899998765544321 1112233 45777 777776432222223455667888999999999776
Q ss_pred CCCCCCCcchHHHhhccCC-CCCCcceEEEEeecCC
Q 047511 433 NNGDSREPEIETHVLDMLK-PHQNLERFCISGYGGT 467 (471)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~ 467 (471)
. .......+...+. +.+.|++|++++|.++
T Consensus 233 l-----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 233 L-----TDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred C-----chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 1 1111122222221 3578999999999875
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=4.4e-08 Score=98.39 Aligned_cols=160 Identities=30% Similarity=0.362 Sum_probs=115.3
Q ss_pred CCCCcCCCC-cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 289 LPNSFGDLK-HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 289 ~p~~~~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
+|+....+. +|+.|++++|.+..+|..+..+++|+.|++++ +.+..+|...+.+++|+.|++++| .+..+|..++.+
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~ 208 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELL 208 (394)
T ss_pred CccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhh
Confidence 456666664 89999999999999988899999999999998 588889888878999999999999 888899887777
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHh
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHV 446 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 446 (471)
.+|++|.+..+. ....+..+. +.++. .+.+.+ +.....+..++.+.+|+.|+++.|. ...
T Consensus 209 ~~L~~l~~~~N~--~~~~~~~~~~~~~l~-~l~l~~-----n~~~~~~~~~~~l~~l~~L~~s~n~----------i~~- 269 (394)
T COG4886 209 SALEELDLSNNS--IIELLSSLSNLKNLS-GLELSN-----NKLEDLPESIGNLSNLETLDLSNNQ----------ISS- 269 (394)
T ss_pred hhhhhhhhcCCc--ceecchhhhhccccc-ccccCC-----ceeeeccchhccccccceecccccc----------ccc-
Confidence 788888765442 112233333 33333 233221 1222225668888899999998665 122
Q ss_pred hccCCCCCCcceEEEEeecCCCC
Q 047511 447 LDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 447 ~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
.+.+.+..+|++|+++++.+...
T Consensus 270 i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 270 ISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccCccCEEeccCcccccc
Confidence 22377788999999999877643
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.43 E-value=3.2e-07 Score=97.54 Aligned_cols=151 Identities=18% Similarity=0.057 Sum_probs=86.3
Q ss_pred CCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCC
Q 047511 296 LKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCS 375 (471)
Q Consensus 296 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~ 375 (471)
+++|++|++++|+|+.+|.. ..+|+.|++++| .+..+|.. ..+|+.|++++| .+..+|.. +++|+.|++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeEC
Confidence 46788888888888888753 357788888884 56777753 356778888888 77788863 467888876
Q ss_pred eeecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcc------hHHHhhcc
Q 047511 376 FVVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPE------IETHVLDM 449 (471)
Q Consensus 376 ~~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~------~~~~~~~~ 449 (471)
..+... .++.+ ...|+ .|.+.+ +.+. .+|. -..+|+.|+|+.|.....+.... .....+..
T Consensus 310 S~N~L~---~Lp~l-p~~L~-~L~Ls~----N~L~-~LP~---lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 310 SDNQLA---SLPAL-PSELC-KLWAYN----NQLT-SLPT---LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS 376 (788)
T ss_pred CCCccc---cCCCC-ccccc-cccccc----Cccc-cccc---cccccceEecCCCccCCCCCCCcccceehhhcccccc
Confidence 554322 11111 22344 444443 1221 1222 11478999998776222110000 00000111
Q ss_pred CC-CCCCcceEEEEeecCCCCC
Q 047511 450 LK-PHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 450 l~-~~~~L~~L~L~~~~~~~~P 470 (471)
+. .+++|+.|+|++|.++.+|
T Consensus 377 LP~l~~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 377 LPALPSGLKELIVSGNRLTSLP 398 (788)
T ss_pred CcccccccceEEecCCcccCCC
Confidence 11 1346777777777777776
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=3.3e-07 Score=97.38 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=19.3
Q ss_pred HhhccCCCCCCcceEEEEeecCCC
Q 047511 445 HVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
.+|+.+..+++|+.|+|++|+++.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCc
Confidence 567777788899999999998763
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=5.4e-07 Score=95.33 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=55.5
Q ss_pred ceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCee
Q 047511 299 LRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFV 377 (471)
Q Consensus 299 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~ 377 (471)
++.|+|++|.+. .+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..++++++|++|++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 5666777777777777777655567777777777777777777755556676677777777776654
Q ss_pred ec
Q 047511 378 VG 379 (471)
Q Consensus 378 ~~ 379 (471)
+.
T Consensus 500 N~ 501 (623)
T PLN03150 500 NS 501 (623)
T ss_pred Cc
Confidence 43
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=3e-07 Score=99.65 Aligned_cols=129 Identities=27% Similarity=0.312 Sum_probs=96.9
Q ss_pred CcceEEEecCCC--CCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCccc
Q 047511 297 KHLRHLDLSETD--IQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTL 373 (471)
Q Consensus 297 ~~L~~L~l~~~~--l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L 373 (471)
+.|+.|-+.+|. +..++. .|..++.|++||+++|..++++|+.|++|-+|++|+++++ .+..+|.++++|+.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 468888888885 666654 4778999999999999999999999999999999999999 888999999999999999
Q ss_pred CCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEe
Q 047511 374 CSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQW 430 (471)
Q Consensus 374 ~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~ 430 (471)
++....... ....-+. |++|+ .|.+..-. .......-..+..+.+|+.+....
T Consensus 624 nl~~~~~l~-~~~~i~~~L~~Lr-~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 624 NLEVTGRLE-SIPGILLELQSLR-VLRLPRSA--LSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccccccc-cccchhhhccccc-EEEeeccc--cccchhhHHhhhcccchhhheeec
Confidence 987665431 1123333 77777 66665422 122333444567778888887753
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=5.7e-08 Score=88.88 Aligned_cols=132 Identities=24% Similarity=0.194 Sum_probs=64.6
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCe
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
..|+.+||++|.|+.+.+++.-++.++.|++++| .+..+-. +..|++|++||+++| .+.++-.+=.+|-+.++|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~-- 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK-- 358 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee--
Confidence 4455555555555555555555555555555552 3333322 455555555555555 3333222222233333332
Q ss_pred eecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCc
Q 047511 377 VVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNL 456 (471)
Q Consensus 377 ~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L 456 (471)
+.. |..+.+ +.+.++.+|..|+++.|.. ...+-..++.++|+|
T Consensus 359 -----------------------La~-----N~iE~L-SGL~KLYSLvnLDl~~N~I--------e~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 359 -----------------------LAQ-----NKIETL-SGLRKLYSLVNLDLSSNQI--------EELDEVNHIGNLPCL 401 (490)
T ss_pred -----------------------hhh-----hhHhhh-hhhHhhhhheeccccccch--------hhHHHhcccccccHH
Confidence 221 111111 1245556666777765541 112234566677777
Q ss_pred ceEEEEeecCCCCC
Q 047511 457 ERFCISGYGGTKCR 470 (471)
Q Consensus 457 ~~L~L~~~~~~~~P 470 (471)
+.|.|.+|++..+|
T Consensus 402 E~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 402 ETLRLTGNPLAGSV 415 (490)
T ss_pred HHHhhcCCCccccc
Confidence 77777777776654
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.5e-07 Score=65.33 Aligned_cols=57 Identities=35% Similarity=0.456 Sum_probs=48.6
Q ss_pred CcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCC
Q 047511 297 KHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDV 354 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~ 354 (471)
++|++|++++|+++.+| ..+.++++|++|++++| .+..+| ..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 57899999999999987 47889999999999985 566665 46799999999999998
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=5.3e-07 Score=95.36 Aligned_cols=87 Identities=23% Similarity=0.366 Sum_probs=76.6
Q ss_pred eCCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccC
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGK 366 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~ 366 (471)
.+|..+..|++|+.|+|++|.+. .+|..++.+++|+.|++++|+..+.+|..+++|++|++|++++|...+.+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 45788999999999999999998 88999999999999999998888899999999999999999999878899998775
Q ss_pred C-CCCcccC
Q 047511 367 L-ACLLTLC 374 (471)
Q Consensus 367 l-~~L~~L~ 374 (471)
+ .++..++
T Consensus 513 ~~~~~~~l~ 521 (623)
T PLN03150 513 RLLHRASFN 521 (623)
T ss_pred ccccCceEE
Confidence 3 3444444
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=2.4e-07 Score=93.05 Aligned_cols=159 Identities=25% Similarity=0.257 Sum_probs=119.3
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCC-CCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLY-NLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
..+..++.++.|++.+|.++.+|+....+. +|+.|++++ +.+..+|..++.+++|+.|+++.| .+..+|...+.+++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 345566889999999999999999999885 999999999 689999989999999999999999 89999998889999
Q ss_pred CcccCCeeecCcccccccc-cc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh
Q 047511 370 LLTLCSFVVGKDIGSALQE-LK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL 447 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~-l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 447 (471)
|+.|++..+... .++. +. ...|. .+.+.... ....+..+.++.++..|.+..|. ...++
T Consensus 188 L~~L~ls~N~i~---~l~~~~~~~~~L~-~l~~~~N~-----~~~~~~~~~~~~~l~~l~l~~n~----------~~~~~ 248 (394)
T COG4886 188 LNNLDLSGNKIS---DLPPEIELLSALE-ELDLSNNS-----IIELLSSLSNLKNLSGLELSNNK----------LEDLP 248 (394)
T ss_pred hhheeccCCccc---cCchhhhhhhhhh-hhhhcCCc-----ceecchhhhhcccccccccCCce----------eeecc
Confidence 999986544322 2222 12 33344 44444321 22234457777788888875443 22236
Q ss_pred ccCCCCCCcceEEEEeecCCCCC
Q 047511 448 DMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 448 ~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
..+..+++|++|++++|.++.++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred chhccccccceeccccccccccc
Confidence 67788889999999999998775
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-07 Score=90.19 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=71.4
Q ss_pred eeeeCCCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc
Q 047511 285 TFLPLPNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG 363 (471)
Q Consensus 285 ~l~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~ 363 (471)
.|..+|..+. ..-..+.|..|+|+.||+ +|+.+++|+.|||++|+.-..-|..|..+.+|..|-+-+|..+..+|.+
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4444555443 245678899999999975 7899999999999996555556899999999988877775499999997
Q ss_pred -ccCCCCCcccCCe
Q 047511 364 -MGKLACLLTLCSF 376 (471)
Q Consensus 364 -~~~l~~L~~L~~~ 376 (471)
|+.|.+|+-|.+.
T Consensus 135 ~F~gL~slqrLllN 148 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLN 148 (498)
T ss_pred HhhhHHHHHHHhcC
Confidence 8899998888653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=9.9e-07 Score=76.94 Aligned_cols=87 Identities=26% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCcC-CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhh-hccccCCeeecCCCCCCccCcc--cccC
Q 047511 291 NSFG-DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDM-GNLLKLHHLDNSDVDASEEIPK--GMGK 366 (471)
Q Consensus 291 ~~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~-~~l~~L~~L~l~~~~~~~~lP~--~~~~ 366 (471)
+.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++ +.++.++..+ ..+++|+.|++++| .+..+-. .+..
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSS 111 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG
T ss_pred cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHc
Confidence 3454 5788999999999999885 588899999999998 5788887666 46899999999999 6665543 3667
Q ss_pred CCCCcccCCeeecC
Q 047511 367 LACLLTLCSFVVGK 380 (471)
Q Consensus 367 l~~L~~L~~~~~~~ 380 (471)
+++|++|++..++.
T Consensus 112 l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 112 LPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TT-GG
T ss_pred CCCcceeeccCCcc
Confidence 78888887665543
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.22 E-value=6.1e-06 Score=78.23 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCcEEEEEecCCCCCcchhhhcccccc---CCCCCcEEEee-------------------------------CchhHHH
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFE---AGAPGCQIILT-------------------------------KDDCLQV 116 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~---~~~~gsriiiT-------------------------------~~ea~~L 116 (471)
.+++++||+||+|.-+...++.+..-.. .......|++| .+|..++
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 6788999999998765555665542211 11222344555 2333344
Q ss_pred HHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHH
Q 047511 117 FTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLL 158 (471)
Q Consensus 117 f~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 158 (471)
+...+..........--.+..+.|++.|+|.|..+..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 433321111000111124678889999999999998888776
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=9.3e-06 Score=53.37 Aligned_cols=40 Identities=38% Similarity=0.538 Sum_probs=25.0
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccc
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMC 337 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP 337 (471)
++|++|++++|+|+.+|+.+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3567777777777777666777777777777764 444443
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=1.9e-05 Score=77.46 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=51.0
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccC
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGK 366 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~ 366 (471)
..+.+++.|++++|.++.+|. + ..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|+++..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence 345678888888888888872 2 34688888888888888887653 58888888888777788865433
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=8.7e-06 Score=86.24 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=86.2
Q ss_pred CcceEEEecCCCCC--cCCcccc-CCCCCcEEEccCCCcc--cccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 297 KHLRHLDLSETDIQ--ILPESVN-TLYNLRTLMLQKCNQL--AKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 297 ~~L~~L~l~~~~l~--~lp~~i~-~l~~L~~L~l~~~~~~--~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
.+|++|+++|...- .-|..++ -||+|+.|.+++ ..+ .++-.-..++++|..||++++ .+..+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 46778888775322 3344444 478888888876 222 222233457888999999988 77666 6788999999
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcccCCCCC--hhhhHHhhcCCcccccceEEEecC
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRD--VSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~--~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
+|.+.+........+.+|- +++|+ .|.++.-..... .....-+.-..+++|+.|+.|.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9988777666555666666 77777 777776433221 122233344557888888887554
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.2e-05 Score=50.79 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCc
Q 047511 320 YNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIP 361 (471)
Q Consensus 320 ~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP 361 (471)
++|++|++++ +.++.+|..+++|++|+.|++++| .+..+|
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4799999999 578899998999999999999999 666665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=1.3e-05 Score=57.17 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCee
Q 047511 320 YNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFV 377 (471)
Q Consensus 320 ~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~ 377 (471)
++|++|++++| .+..+|. .|..+++|++|++++| .+..+|++ +..+++|++|++..
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcC
Confidence 47899999996 7778875 6789999999999999 77888875 89999999997643
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.73 E-value=2.7e-05 Score=75.22 Aligned_cols=246 Identities=17% Similarity=0.213 Sum_probs=151.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
||||||+|-++.. ++..|.+...++.++.---.+... -+.. ....... .+-+.....+..+..++|.++|+|
T Consensus 24 gvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~--~~~a--g~~gl~~---~~g~~~~~~~~~~~~~rr~llvld 95 (414)
T COG3903 24 GVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF--PTLA--GALGLHV---QPGDSAVDTLVRRIGDRRALLVLD 95 (414)
T ss_pred ccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH--HHHH--hhccccc---ccchHHHHHHHHHHhhhhHHHHhc
Confidence 7999999999999 888888777666665311111111 0000 0011111 111223335677788899999999
Q ss_pred cCCCCCc-chhhhccccccCCCCCcEEEee--------------------CchhHHHHHhhhcCCC-CCCCCchHHHHHH
Q 047511 81 DVWNENY-SDWDSLSLPFEAGAPGCQIILT--------------------KDDCLQVFTQHCLGMR-DFSMQQSLKDISE 138 (471)
Q Consensus 81 DVw~~~~-~~~~~l~~~~~~~~~gsriiiT--------------------~~ea~~Lf~~~af~~~-~~~~~~~~~~~~~ 138 (471)
|- ++. .+-..+...+..+.+.-+|+.| .+++.++|...|.... ...-...-.....
T Consensus 96 nc--ehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~ 173 (414)
T COG3903 96 NC--EHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVA 173 (414)
T ss_pred Cc--HHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHH
Confidence 98 421 2333444445555555667777 6788899887764322 1112223346788
Q ss_pred HHHHHcCCCchHHHHHHHHHcCCCCC---------------------CCcCCchhHHhhhccCCChhhHHHHhHhccCCC
Q 047511 139 KIVIRCNGLPLPAKTLVGLLRGENDP---------------------LVSCDIIPALRLSYHYLSPNLKRCFAYCSLFPK 197 (471)
Q Consensus 139 ~iv~~c~GlPLal~~~g~~L~~~~~~---------------------~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~f~~ 197 (471)
+|.+...|.|++|...++..+.-... .........+..||.-|..-++..|--++.|..
T Consensus 174 ~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g 253 (414)
T COG3903 174 EICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVG 253 (414)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhh
Confidence 99999999999999988877664432 233456688999999999999999999998877
Q ss_pred CccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccC-CCCCccchhhhHHHHHHHh
Q 047511 198 NYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSS-SDPCRFLMHDLINDLAQWA 265 (471)
Q Consensus 198 ~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~mhdlv~~~a~~~ 265 (471)
.+.-. ...|.+.|-..... ......-+..+++.+++...+ .....|+.-+-++.|+...
T Consensus 254 ~f~~~----l~~~~a~g~~~~~~-----~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 254 GFDLG----LALAVAAGADVDVP-----RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred hhccc----HHHHHhcCCccccc-----hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 65533 33454444332111 122333466788888887543 2344567777777776554
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.9e-06 Score=79.67 Aligned_cols=13 Identities=0% Similarity=0.217 Sum_probs=8.1
Q ss_pred cCCCcEEEEEecC
Q 047511 70 MSRKKFLLVLDDV 82 (471)
Q Consensus 70 L~~kr~LiVLDDV 82 (471)
...-||.-+++..
T Consensus 15 ~~Tvr~iG~V~g~ 27 (505)
T KOG3207|consen 15 IATVRYIGEVEGN 27 (505)
T ss_pred EEEEEEEEEEcCC
Confidence 3445677777766
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.57 E-value=0.00044 Score=66.83 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccC---------CCC--CcEE--Eee-----CchhHHHHHhhhcCC
Q 047511 63 QEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEA---------GAP--GCQI--ILT-----KDDCLQVFTQHCLGM 124 (471)
Q Consensus 63 ~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~---------~~~--gsri--iiT-----~~ea~~Lf~~~af~~ 124 (471)
.+.++..+.+.+..+|+|+.+.. .+|.....++.. ..+ -||. ++. .+|..+++...+...
T Consensus 98 ~e~l~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 98 EELLYPAMEDFRLDIVIGKGPSA--RSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred HHHhhHHHhhhheeeeeccCccc--cceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 34577778888888999988544 333321111000 000 0222 222 677888888776433
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCC-----CCC---CCcCCchhHHhhhccCCChhhHHHHh-HhccC
Q 047511 125 RDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGE-----NDP---LVSCDIIPALRLSYHYLSPNLKRCFA-YCSLF 195 (471)
Q Consensus 125 ~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~-----~~~---~~~~~i~~~l~~sy~~L~~~~k~~fl-~~~~f 195 (471)
+. .--.+....|++.|+|.|-.+..+...+... ... +........+...|..++++.+..+. .++.+
T Consensus 176 ~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~ 251 (305)
T TIGR00635 176 NV----EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQF 251 (305)
T ss_pred CC----CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh
Confidence 21 1123567889999999997665555443211 111 11112233356678899998888776 44555
Q ss_pred CCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHH-HHHhcCcccccC
Q 047511 196 PKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLH-ELYSRSSFQQSS 246 (471)
Q Consensus 196 ~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~~~~ 246 (471)
. +..+....+-... |. ....+...++ .|++++++....
T Consensus 252 ~-~~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 252 Q-GGPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred C-CCcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcccCC
Confidence 4 3345544443322 11 1234666678 699999997543
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.9e-05 Score=75.05 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=5.0
Q ss_pred ccccceEEEec
Q 047511 421 KNLKTLLLQWT 431 (471)
Q Consensus 421 ~~L~~L~L~~~ 431 (471)
++|+.|+++-|
T Consensus 301 ~kL~~L~i~~N 311 (505)
T KOG3207|consen 301 PKLEYLNISEN 311 (505)
T ss_pred ccceeeecccC
Confidence 34444444433
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.53 E-value=1.8e-05 Score=72.88 Aligned_cols=85 Identities=25% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
.+++.-++.+++|++++|++..+-. +..|++|+.||+++| .+.++-..=-+|-+++.|.+.+| .+..+ .++++|-+
T Consensus 300 DESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYS 375 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYS 375 (490)
T ss_pred hhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhh
Confidence 4455667788888888888887644 777888888888884 55555444445556666666666 44444 24566666
Q ss_pred CcccCCeee
Q 047511 370 LLTLCSFVV 378 (471)
Q Consensus 370 L~~L~~~~~ 378 (471)
|..|++..+
T Consensus 376 LvnLDl~~N 384 (490)
T KOG1259|consen 376 LVNLDLSSN 384 (490)
T ss_pred heecccccc
Confidence 666665433
No 48
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.53 E-value=0.0016 Score=68.44 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=118.3
Q ss_pred CcHHHHHHHHHHHcC--CCcEEEEEecCCCCCcchhhh-ccccccCCCCCcEEEee------------------------
Q 047511 57 DELGLLQEKLKNQMS--RKKFLLVLDDVWNENYSDWDS-LSLPFEAGAPGCQIILT------------------------ 109 (471)
Q Consensus 57 ~~~~~~~~~l~~~L~--~kr~LiVLDDVw~~~~~~~~~-l~~~~~~~~~gsriiiT------------------------ 109 (471)
.+...+...+...+. .+.+.+||||----....... +.--+....++-.+|||
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~ 190 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSE 190 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChH
Confidence 445555556666554 468999999963221112211 11112334457777887
Q ss_pred -----CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCCC--------CcCCchhHH-h
Q 047511 110 -----KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDPL--------VSCDIIPAL-R 175 (471)
Q Consensus 110 -----~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~--------~~~~i~~~l-~ 175 (471)
.+|+-++|.....- +--..-++.+.+..+|-+-|+..++-.+++....+ ..+-+.+.| .
T Consensus 191 ~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~e 263 (894)
T COG2909 191 ELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVE 263 (894)
T ss_pred hhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHH
Confidence 78888888876411 11134578899999999999999999888333321 112233333 3
Q ss_pred hhccCCChhhHHHHhHhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCccc-ccCCCCCccch
Q 047511 176 LSYHYLSPNLKRCFAYCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQ-QSSSDPCRFLM 254 (471)
Q Consensus 176 ~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~-~~~~~~~~~~m 254 (471)
--++.||++.|..++-+|+++.- .+.+...-.+ ++.+..++++|-+++++- +-++...-|+.
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~~Wfry 326 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEGQWFRY 326 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCCceeeh
Confidence 35689999999999999988532 2233332211 134566799999999876 45566678999
Q ss_pred hhhHHHHHHHh
Q 047511 255 HDLINDLAQWA 265 (471)
Q Consensus 255 hdlv~~~a~~~ 265 (471)
|.+..++.+..
T Consensus 327 H~LFaeFL~~r 337 (894)
T COG2909 327 HHLFAEFLRQR 337 (894)
T ss_pred hHHHHHHHHhh
Confidence 99999998765
No 49
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.52 E-value=0.0019 Score=64.93 Aligned_cols=231 Identities=14% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH-------HHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcC--
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL-------QEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMS-- 71 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l-------q~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-- 71 (471)
|+||||+++.+++.+...... ..+..+ ...++.++. ..+... .......+.++....+.+.+.
T Consensus 65 GtGKT~l~~~v~~~l~~~~~~-~~~v~in~~~~~~~~~~~~~i~------~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 65 GTGKTTTVKKVFEELEEIAVK-VVYVYINCQIDRTRYAIFSEIA------RQLFGH-PPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-cEEEEEECCcCCCHHHHHHHHH------HHhcCC-CCCCCCCCHHHHHHHHHHHHHhc
Confidence 799999999999988664311 111111 011222222 122111 111122345666677777775
Q ss_pred CCcEEEEEecCCCCC----cchhhhccccccCCCCCcE---EEee----------------------------CchhHHH
Q 047511 72 RKKFLLVLDDVWNEN----YSDWDSLSLPFEAGAPGCQ---IILT----------------------------KDDCLQV 116 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~----~~~~~~l~~~~~~~~~gsr---iiiT----------------------------~~ea~~L 116 (471)
++.++||||+++.-. ...+..+...+.. .++++ |.|+ .++..++
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~i 215 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDI 215 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHH
Confidence 456899999995421 1233443332221 23333 3333 3455556
Q ss_pred HHhhh---cCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcC---CC-CCCCcCCch--------hHHhhhccCC
Q 047511 117 FTQHC---LGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRG---EN-DPLVSCDII--------PALRLSYHYL 181 (471)
Q Consensus 117 f~~~a---f~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~---~~-~~~~~~~i~--------~~l~~sy~~L 181 (471)
+...+ |... ..+...++.+++......|..+.|+.++-.+... +. ..-..+.+. ....-.+..|
T Consensus 216 l~~r~~~~~~~~-~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L 294 (394)
T PRK00411 216 LKDRVEEGFYPG-VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTL 294 (394)
T ss_pred HHHHHHhhcccC-CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55554 2111 1122223333333333356677887776543211 11 111112222 2234467899
Q ss_pred ChhhHHHHhHhccCCC--CccccHHHHHHHH--HHCCCCCCCCchhHHHHHHHHHHHHHHhcCccccc
Q 047511 182 SPNLKRCFAYCSLFPK--NYEFHEEEVTLLW--MAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQS 245 (471)
Q Consensus 182 ~~~~k~~fl~~~~f~~--~~~i~~~~l~~~w--~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 245 (471)
|.++|..+..++.... ...+....+.... +++..-..+- -......++++|.+.++|+..
T Consensus 295 ~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~----~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 295 PLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR----THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC----cHHHHHHHHHHHHhcCCeEEE
Confidence 9999887766553321 1334455554321 2221111110 113345689999999999863
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.51 E-value=0.00052 Score=67.03 Aligned_cols=120 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCC-----CC---CCcCCchhHHhhhccCC
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGEN-----DP---LVSCDIIPALRLSYHYL 181 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~-----~~---~~~~~i~~~l~~sy~~L 181 (471)
.++..+++...+...+. .--.+....|++.|+|.|-.+..+...+.... .. ..-......+...+..|
T Consensus 182 ~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l 257 (328)
T PRK00080 182 VEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDELGL 257 (328)
T ss_pred HHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcCCC
Confidence 67788888877654331 11235688999999999965554444332111 11 11122334456677889
Q ss_pred ChhhHHHHh-HhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHH-HHHhcCcccccC
Q 047511 182 SPNLKRCFA-YCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLH-ELYSRSSFQQSS 246 (471)
Q Consensus 182 ~~~~k~~fl-~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~~~~ 246 (471)
++..+..+. ....|..+ .+..+.+-... | ...+.++..++ .|++.++++...
T Consensus 258 ~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 258 DEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhHHHHHcCCcccCC
Confidence 988888886 55566544 55565554432 1 11234555666 899999997543
No 51
>PF13173 AAA_14: AAA domain
Probab=97.51 E-value=7.4e-05 Score=62.14 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEeeCchhHHH
Q 047511 65 KLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILTKDDCLQV 116 (471)
Q Consensus 65 ~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT~~ea~~L 116 (471)
.+.+....++.+|+||+| ....+|......+-..++..+||+|.-.+..+
T Consensus 53 ~~~~~~~~~~~~i~iDEi--q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 53 YFLELIKPGKKYIFIDEI--QYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHHhhccCCcEEEEehh--hhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 344444457889999999 65678888777777666778999994433333
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.44 E-value=2.3e-05 Score=79.20 Aligned_cols=152 Identities=25% Similarity=0.235 Sum_probs=72.4
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLL 371 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~ 371 (471)
+..|.+|++|++++|.|+.+ ..+..+..|+.|++++ +.+..++ .+..+++|+.+++++| .+..++.. ...+.+++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchH
Confidence 44456666666666666555 2344555566666665 3444443 2444566666666666 44444432 34555555
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcc--cccceEEEecCCCCCCCCcchHHHhhc
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKK--NLKTLLLQWTSNNGDSREPEIETHVLD 448 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~~~~~~~~~~~ 448 (471)
.+.+..+... .+..+. +..+. .+.+.. +.+... ..+..+. +|+.++++.|.. ...++
T Consensus 190 ~l~l~~n~i~---~i~~~~~~~~l~-~~~l~~----n~i~~~--~~l~~~~~~~L~~l~l~~n~i----------~~~~~ 249 (414)
T KOG0531|consen 190 ELDLGGNSIR---EIEGLDLLKKLV-LLSLLD----NKISKL--EGLNELVMLHLRELYLSGNRI----------SRSPE 249 (414)
T ss_pred HHhccCCchh---cccchHHHHHHH-Hhhccc----ccceec--cCcccchhHHHHHHhcccCcc----------ccccc
Confidence 5543322221 111111 11111 111110 001000 0011112 378888887761 11125
Q ss_pred cCCCCCCcceEEEEeecCCC
Q 047511 449 MLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 449 ~l~~~~~L~~L~L~~~~~~~ 468 (471)
.+..+.++..|++..+.+..
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccccccccccchhhccccc
Confidence 66777789999998887654
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=5.9e-05 Score=61.67 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCCcceEEEecCCCCCcCCccccC-CCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCccc
Q 047511 295 DLKHLRHLDLSETDIQILPESVNT-LYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTL 373 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L 373 (471)
...+|+..+|++|.++..|+.+.. .+-+++|++++ +.+..+|.++..++.|+.|+++.| .+...|.-+..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 345677788888888888876654 34778888887 678888888888888888888888 666677777777777777
Q ss_pred CC
Q 047511 374 CS 375 (471)
Q Consensus 374 ~~ 375 (471)
+.
T Consensus 129 ds 130 (177)
T KOG4579|consen 129 DS 130 (177)
T ss_pred cC
Confidence 64
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.20 E-value=0.00036 Score=65.81 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=39.9
Q ss_pred CCCCcceEEEecCCCCC-----cCCccccCCCCCcEEEccCC---Ccccccchhhh-------ccccCCeeecCCCCCCc
Q 047511 294 GDLKHLRHLDLSETDIQ-----ILPESVNTLYNLRTLMLQKC---NQLAKMCSDMG-------NLLKLHHLDNSDVDASE 358 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~---~~~~~lP~~~~-------~l~~L~~L~l~~~~~~~ 358 (471)
..+..++.++|++|.+. .+.+.+.+.++|+.-+++.- ....++|+.+. ..++|+++||+.|-.-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34556666666666544 23333444455555555430 11223333322 23456666666663222
Q ss_pred cCccc----ccCCCCCcccCCeeecC
Q 047511 359 EIPKG----MGKLACLLTLCSFVVGK 380 (471)
Q Consensus 359 ~lP~~----~~~l~~L~~L~~~~~~~ 380 (471)
.-++. +.++.+|++|.+.+++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC
Confidence 22222 33455566655544443
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.16 E-value=6e-05 Score=76.15 Aligned_cols=154 Identities=25% Similarity=0.285 Sum_probs=96.2
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACL 370 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 370 (471)
..+..+.+|.+|++.+|.|+.+...+..+++|++|++++ +.+..+. .+..++.|+.|++.+| .+..++ ++..+++|
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSL 164 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccC-cchhcc-CCccchhh
Confidence 347788899999999999998876688899999999998 5777774 4788888999999999 666664 46668888
Q ss_pred cccCCeeecCcccccccc--cc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh
Q 047511 371 LTLCSFVVGKDIGSALQE--LK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL 447 (471)
Q Consensus 371 ~~L~~~~~~~~~~~~~~~--l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 447 (471)
+.+++..+... .+.. +. +..+. .+.+.+.. +.. ...+..+..+..+++..|. ....
T Consensus 165 ~~l~l~~n~i~---~ie~~~~~~~~~l~-~l~l~~n~----i~~--i~~~~~~~~l~~~~l~~n~-----------i~~~ 223 (414)
T KOG0531|consen 165 KLLDLSYNRIV---DIENDELSELISLE-ELDLGGNS----IRE--IEGLDLLKKLVLLSLLDNK-----------ISKL 223 (414)
T ss_pred hcccCCcchhh---hhhhhhhhhccchH-HHhccCCc----hhc--ccchHHHHHHHHhhccccc-----------ceec
Confidence 88876554433 2222 23 44444 33333311 110 1112223334444554332 1122
Q ss_pred ccCCCCCC--cceEEEEeecCCCC
Q 047511 448 DMLKPHQN--LERFCISGYGGTKC 469 (471)
Q Consensus 448 ~~l~~~~~--L~~L~L~~~~~~~~ 469 (471)
+.+..++. |+.+++++|++...
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred cCcccchhHHHHHHhcccCccccc
Confidence 23333333 89999999988765
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.12 E-value=0.00014 Score=68.48 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=21.6
Q ss_pred cCCCCcceEEEecCCCCC-cCC----ccccCCCCCcEEEccCC
Q 047511 293 FGDLKHLRHLDLSETDIQ-ILP----ESVNTLYNLRTLMLQKC 330 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~-~lp----~~i~~l~~L~~L~l~~~ 330 (471)
+...++|++|+||.|.+. .-+ .-+..++.|+.|.|.+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 344556777777777554 112 23445666666666665
No 57
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.03 E-value=0.0012 Score=60.74 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=24.4
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHH
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKT 153 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 153 (471)
.+++++++...+-... .. +.-.+...+|...+||.|..|.-
T Consensus 193 ~~e~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 193 KEEAREFLKELFKELI--KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhh--cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 5677787777542221 11 12245568999999999988753
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.0015 Score=60.31 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+..+
T Consensus 49 G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 49 SSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999987554
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.94 E-value=4.2e-05 Score=78.35 Aligned_cols=83 Identities=25% Similarity=0.199 Sum_probs=46.9
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcccccCCCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKGMGKLACL 370 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 370 (471)
++.-++.|++|+|++|+++... .+..|+.|+.||+++ |.+..+|.- ...+ .|..|.+++| .+..+- ++.+|++|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeeccc-HHHhhh-hHHhhhhh
Confidence 3444556666666666666553 556666666666666 455555531 1222 2666666666 444442 46666666
Q ss_pred cccCCeeec
Q 047511 371 LTLCSFVVG 379 (471)
Q Consensus 371 ~~L~~~~~~ 379 (471)
+.|++..+-
T Consensus 257 ~~LDlsyNl 265 (1096)
T KOG1859|consen 257 YGLDLSYNL 265 (1096)
T ss_pred hccchhHhh
Confidence 666655443
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.93 E-value=0.0028 Score=63.90 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=45.8
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee---------------------------CchhHHHHHhhhcC
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT---------------------------KDDCLQVFTQHCLG 123 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT---------------------------~~ea~~Lf~~~af~ 123 (471)
.+++.+|++|+|+.-...+.+.+...+. .|..++|. .++.++++...+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 4578899999997665555665554433 24444441 45666776664422
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCchHHHHHH
Q 047511 124 MRDFSMQQSLKDISEKIVIRCNGLPLPAKTLV 155 (471)
Q Consensus 124 ~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g 155 (471)
..... ..--.+....+++.|+|.|-.+..+-
T Consensus 167 ~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11000 01123556777888888876654443
No 61
>PF05729 NACHT: NACHT domain
Probab=96.92 E-value=0.00085 Score=58.12 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=16.7
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+||||+++.++..+....
T Consensus 10 G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CCChHHHHHHHHHHHHhcC
Confidence 7999999999999877754
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=3.8e-05 Score=70.75 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=89.9
Q ss_pred cCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccch--hhhccccCCeeecCCCCCCccCcc-cccC-C
Q 047511 293 FGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCS--DMGNLLKLHHLDNSDVDASEEIPK-GMGK-L 367 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~l~~~~~~~~lP~-~~~~-l 367 (471)
+..+.+|+.|++.++++. .+-..|.+-.+|+.|+++.|+-+++..- -+.+++.|..|+++.|......-. .+.+ -
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 345667777777777776 4555667777788888888776655432 246777788888877743222100 0111 1
Q ss_pred CCCcccCCeeecCcc-cccccccc--cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHH
Q 047511 368 ACLLTLCSFVVGKDI-GSALQELK--LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIET 444 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~-~~~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 444 (471)
..|..|++.....+- .+.+..+. -++|. .|.+++... +.......|-+++.|+.|+++-|.. +..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~-~LDLSD~v~---l~~~~~~~~~kf~~L~~lSlsRCY~--------i~p 353 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV-HLDLSDSVM---LKNDCFQEFFKFNYLQHLSLSRCYD--------IIP 353 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCcee-eeccccccc---cCchHHHHHHhcchheeeehhhhcC--------CCh
Confidence 344444443222211 11233333 44444 555555332 2233445577778888888877651 122
Q ss_pred HhhccCCCCCCcceEEEEeec
Q 047511 445 HVLDMLKPHQNLERFCISGYG 465 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~~~ 465 (471)
+.+-.+...|.|.+|++.|+-
T Consensus 354 ~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 354 ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHeeeeccCcceEEEEecccc
Confidence 233345667889999888763
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.77 E-value=0.0016 Score=54.16 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCccchHHHHHHHHHHHhhh----hHHHHHHHHHHH-hhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcE
Q 047511 1 MIGETNLSVSIEMLVNKLAS----EAILLFSLQEQI-QSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKF 75 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~----~~~~~~~lq~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 75 (471)
|+||||+++.+.+.....+. ....+....... ..++. ..+. ...+.......+..++.+.+.+.+...+.
T Consensus 14 G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~---~~l~~~~~~~~~~~~l~~~~~~~l~~~~~ 88 (131)
T PF13401_consen 14 GSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFA--QEIL---EALGLPLKSRQTSDELRSLLIDALDRRRV 88 (131)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHH--HHHH---HHHT-SSSSTS-HHHHHHHHHHHHHHCTE
T ss_pred CCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHH--HHHH---HHhCccccccCCHHHHHHHHHHHHHhcCC
Confidence 79999999999998765421 111111221111 11111 1111 11122222245677777888888866554
Q ss_pred -EEEEecCCCC-CcchhhhccccccCCCCCcEEEee
Q 047511 76 -LLVLDDVWNE-NYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 76 -LiVLDDVw~~-~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+||+||+-.- +...++.+..-.. ..+.++|+.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~ 122 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLV 122 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEE
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 9999999221 2223333332222 566677766
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.70 E-value=0.076 Score=52.66 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=38.8
Q ss_pred hhhccCCChhhHHHHhHhccCC--CCccccHHHHHHHHH--HCCC-CCCCCchhHHHHHHHHHHHHHHhcCccccc
Q 047511 175 RLSYHYLSPNLKRCFAYCSLFP--KNYEFHEEEVTLLWM--AEGF-PYHIDTKEQIQDLGHKFLHELYSRSSFQQS 245 (471)
Q Consensus 175 ~~sy~~L~~~~k~~fl~~~~f~--~~~~i~~~~l~~~w~--~~g~-~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 245 (471)
.-+...||.++|..+..++..- .+..+....+...+. ++.+ +.+ ..+.....+++.|...++++..
T Consensus 280 ~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-----~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 280 LELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDP-----LTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHhcCCeEEE
Confidence 4456889998887666554221 333455666665332 2211 112 1235566788999999999864
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.69 E-value=4.9e-05 Score=77.88 Aligned_cols=125 Identities=25% Similarity=0.233 Sum_probs=81.0
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCC
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCS 375 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~ 375 (471)
..|.+.+.++|+++.+.+++.-++.|+.|||++| .+...- .+..++.|++||+++| .+..+|.- ...++ |+.|.+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeee
Confidence 4677888999999999899999999999999995 566664 7889999999999999 88888863 33333 777765
Q ss_pred eeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 376 FVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 376 ~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.++... .+..+. +.+|+ .|.++..- +.+..+..| +..+..|+.|+|.+|+
T Consensus 240 rnN~l~---tL~gie~LksL~-~LDlsyNl-l~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALT---TLRGIENLKSLY-GLDLSYNL-LSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHH---hhhhHHhhhhhh-ccchhHhh-hhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 433211 222222 33333 23333200 011122222 4556677778887776
No 66
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.017 Score=56.06 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=45.1
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHH-HHHcCCCcEEEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKL-KNQMSRKKFLLVL 79 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~kr~LiVL 79 (471)
|+||||||+.++......|.. ++.+. ....++.+..+.- .....++|.++.+
T Consensus 58 G~GKTTlA~liA~~~~~~f~~-----------~sAv~----------------~gvkdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 58 GTGKTTLARLIAGTTNAAFEA-----------LSAVT----------------SGVKDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred CCCHHHHHHHHHHhhCCceEE-----------ecccc----------------ccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 799999999999877665532 11111 0112222222233 2334589999999
Q ss_pred ecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 80 DDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 80 DDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
|.|-.=+..|-+.+... --.|.-|+|-
T Consensus 111 DEIHRfnK~QQD~lLp~---vE~G~iilIG 137 (436)
T COG2256 111 DEIHRFNKAQQDALLPH---VENGTIILIG 137 (436)
T ss_pred ehhhhcChhhhhhhhhh---hcCCeEEEEe
Confidence 99955444455544433 3456666654
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.44 E-value=0.004 Score=52.28 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||+++++.+.
T Consensus 29 G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 29 GTGKTTLARAIANELF 44 (151)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 7999999999999874
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.39 E-value=0.00035 Score=57.23 Aligned_cols=73 Identities=29% Similarity=0.425 Sum_probs=63.6
Q ss_pred CCCCcC-CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc
Q 047511 289 LPNSFG-DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG 363 (471)
Q Consensus 289 ~p~~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~ 363 (471)
+|+.|. ..+.++.|+|++|.|..+|..+..++.|+.|+++. +.+...|..|..|.+|-.|+..+| ....+|-.
T Consensus 68 fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 455554 44588999999999999999999999999999998 578889999999999999999998 77788865
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.37 E-value=0.0045 Score=61.11 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=44.6
Q ss_pred ccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeee
Q 047511 316 VNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVV 378 (471)
Q Consensus 316 i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~ 378 (471)
+..+.++..|++++| .+..+|. -..+|+.|.+++|..+..+|..+. ++|++|.+..+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445789999999997 8888982 234799999999988888887553 57888876543
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.00041 Score=64.14 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=61.2
Q ss_pred cCCCCcceEEEecCC-CCCcC--CccccCCCCCcEEEccCCCcccccchhh-hc-cccCCeeecCCCCC-Ccc--Ccccc
Q 047511 293 FGDLKHLRHLDLSET-DIQIL--PESVNTLYNLRTLMLQKCNQLAKMCSDM-GN-LLKLHHLDNSDVDA-SEE--IPKGM 364 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L~~L~l~~~~~~~~lP~~~-~~-l~~L~~L~l~~~~~-~~~--lP~~~ 364 (471)
+.+=.+|+.|+++.+ ++++. ---+.++..|..|++++|-...+.-..+ .+ -++|+.|+++|+.. +.. +.--.
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 344456666666665 34421 1224556666666666665443321111 11 13566666666521 110 11112
Q ss_pred cCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEec
Q 047511 365 GKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWT 431 (471)
Q Consensus 365 ~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 431 (471)
.++++|.+|+++++-.-....+.++- +..|+ .++++.+-.+. ....-.+.+++.|.+|++.++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~-~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ-HLSLSRCYDII---PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchhe-eeehhhhcCCC---hHHeeeeccCcceEEEEeccc
Confidence 35666666666543322222233333 44454 45554433221 111123556666666666543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0021 Score=35.12 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=8.7
Q ss_pred ceEEEecCCCCCcCCccc
Q 047511 299 LRHLDLSETDIQILPESV 316 (471)
Q Consensus 299 L~~L~l~~~~l~~lp~~i 316 (471)
|++|++++|+++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.05 E-value=0.011 Score=54.31 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=17.6
Q ss_pred ccccCCeeecCCCCCCccCccc----ccCCCCCcccCCeeec
Q 047511 342 NLLKLHHLDNSDVDASEEIPKG----MGKLACLLTLCSFVVG 379 (471)
Q Consensus 342 ~l~~L~~L~l~~~~~~~~lP~~----~~~l~~L~~L~~~~~~ 379 (471)
++++|+..+++.|.+....|+. |++-+.|.+|.+.+++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4455555555555333333332 3344555555444433
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.012 Score=60.55 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=25.9
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-+||+|+++......++.+...+....+...+|++
T Consensus 114 ~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 114 RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 356668899999766556677777776554445555544
No 74
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.93 E-value=0.0044 Score=66.04 Aligned_cols=59 Identities=34% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccc--hhhhccccCCeeecCCC
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMC--SDMGNLLKLHHLDNSDV 354 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP--~~~~~l~~L~~L~l~~~ 354 (471)
.++++|++||+++++++.+ ..++.|++|+.|.+++ -.+..-+ ..+.+|++|++||++..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCCeeecccc
Confidence 4556666666666666665 5566666666666654 2222111 23455666666666655
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0039 Score=56.85 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=48.6
Q ss_pred CcCCCCcceEEEecCC--CCC-cCCccccCCCCCcEEEccCCCccc---ccchhhhccccCCeeecCCCCCCccCcc---
Q 047511 292 SFGDLKHLRHLDLSET--DIQ-ILPESVNTLYNLRTLMLQKCNQLA---KMCSDMGNLLKLHHLDNSDVDASEEIPK--- 362 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~---~lP~~~~~l~~L~~L~l~~~~~~~~lP~--- 362 (471)
.+..|++|+.|.++.| ++. .++...-++++|++|++++| .++ .++ ....+.+|..|++..|.... +-.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre 136 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYRE 136 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccc-hhhhhcchhhhhcccCCccc-cccHHH
Confidence 4456667777777777 444 44444445577777777774 333 222 24566667777777773333 211
Q ss_pred -cccCCCCCcccCCeeec
Q 047511 363 -GMGKLACLLTLCSFVVG 379 (471)
Q Consensus 363 -~~~~l~~L~~L~~~~~~ 379 (471)
-+.-+++|++|+.+.+.
T Consensus 137 ~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHHhhhhccccccccC
Confidence 14456777777665544
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.87 E-value=0.023 Score=58.39 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|+|+++.-....++.+...+....+.+++|+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 456778999999776556788887776655556666554
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.85 E-value=0.0045 Score=60.52 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHHHh-hhhHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKL-ASEAILLFSLQE 30 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~-~~~~~~~~~lq~ 30 (471)
|+||||||++||+.+... |+..+++..+++
T Consensus 179 GvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 179 KAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred CCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 689999999999998764 554444444443
No 78
>PRK04195 replication factor C large subunit; Provisional
Probab=95.66 E-value=0.33 Score=50.05 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|.++++.+
T Consensus 49 G~GKTtla~ala~el 63 (482)
T PRK04195 49 GVGKTSLAHALANDY 63 (482)
T ss_pred CCCHHHHHHHHHHHc
Confidence 799999999999876
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.52 E-value=0.009 Score=52.43 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=68.2
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhc-cccCCeeecCCCCCCccCcc--cccCCCCCccc
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGN-LLKLHHLDNSDVDASEEIPK--GMGKLACLLTL 373 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~-l~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L 373 (471)
.....+||++|.+..++ .+..+.+|.+|.+++ +.+..+-+.+.. +++|+.|.+.+| .+.++-+ .+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 45667899999888664 467788999999987 567777666665 567999999998 6666543 26677888888
Q ss_pred CCeeecCcc--cccccccc-cccccCceEEcc
Q 047511 374 CSFVVGKDI--GSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 374 ~~~~~~~~~--~~~~~~l~-l~~L~~~L~~~~ 402 (471)
.+..+..+. ....--+- +++|+ .|.+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~-~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLR-TLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcce-Eeehhh
Confidence 765554432 12222233 55555 555544
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.46 E-value=0.028 Score=60.30 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+||||||+++++.....|
T Consensus 62 GtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 62 GVGKTTLARIIANHTRAHF 80 (725)
T ss_pred CCCHHHHHHHHHHHhcCcc
Confidence 7999999999998765443
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0072 Score=32.99 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=10.5
Q ss_pred CcEEEccCCCcccccchhhhc
Q 047511 322 LRTLMLQKCNQLAKMCSDMGN 342 (471)
Q Consensus 322 L~~L~l~~~~~~~~lP~~~~~ 342 (471)
|++||+++| .++.+|++|++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSS-EESEEGTTTTT
T ss_pred ccEEECCCC-cCEeCChhhcC
Confidence 555666654 44455555443
No 82
>PRK08116 hypothetical protein; Validated
Probab=95.30 E-value=0.015 Score=54.84 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=16.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+||.++++.+..+
T Consensus 124 GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 124 GTGKTYLAACIANELIEK 141 (268)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999998765
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.17 E-value=0.048 Score=49.99 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+++++....
T Consensus 48 G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 48 GSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 89999999999987543
No 84
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.014 Score=54.25 Aligned_cols=62 Identities=29% Similarity=0.308 Sum_probs=37.5
Q ss_pred cCCCCcceEEEecCCCCCcCCccc-cCCCCCcEEEccCCCcc-cccchhhhccccCCeeecCCC
Q 047511 293 FGDLKHLRHLDLSETDIQILPESV-NTLYNLRTLMLQKCNQL-AKMCSDMGNLLKLHHLDNSDV 354 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~-~~lP~~~~~l~~L~~L~l~~~ 354 (471)
+.+|+.|++|+++.|.+..--.+. ..+.+|++|-+.|...- ...-+....++.++.|.++.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 457788888888888765322222 34567888887763211 233344556666677777666
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=95.05 E-value=0.088 Score=51.16 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++.-++||||+-.-.......+...+......+++|++
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEE
Confidence 45668999999333223334444434334456777776
No 86
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.0017 Score=59.54 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch--hhhccccCCeeecCCC
Q 047511 295 DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS--DMGNLLKLHHLDNSDV 354 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~l~~~ 354 (471)
+|+.|.+|.|+-|+|+.+ ..+..+++|+.|.|+. +.+..+-+ -+.++++|+.|.+..|
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccC
Confidence 444444444444444444 2233444444444444 23333221 1234444444444444
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.96 E-value=0.01 Score=30.14 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=11.2
Q ss_pred CCcceEEEEeecCCCCC
Q 047511 454 QNLERFCISGYGGTKCR 470 (471)
Q Consensus 454 ~~L~~L~L~~~~~~~~P 470 (471)
++|+.|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999998887
No 88
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.95 E-value=0.0065 Score=56.47 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=19.8
Q ss_pred CCccchHHHHHHHHHHHh-hhhHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKL-ASEAILLFSLQ 29 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~-~~~~~~~~~lq 29 (471)
|+|||||++.+|+.+... |+..+++..++
T Consensus 26 G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~ 55 (249)
T cd01128 26 KAGKTTLLQSIANAITKNHPEVYLIVLLID 55 (249)
T ss_pred CCCHHHHHHHHHhccccccCCeEEEEEEcc
Confidence 789999999999987653 43333333333
No 89
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.079 Score=55.41 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.++.-++|+|+|-......+..|...+..-....++|++
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 456678999999554445666666666544445555544
No 90
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.90 E-value=0.034 Score=48.95 Aligned_cols=89 Identities=25% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCcCCCCcceEEEecCCCCCcCCcccc-CCCCCcEEEccCCCcccccch--hhhccccCCeeecCCCCCCccCcc----c
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVN-TLYNLRTLMLQKCNQLAKMCS--DMGNLLKLHHLDNSDVDASEEIPK----G 363 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~l~~~~~~~~lP~----~ 363 (471)
+.|..++.|..|.+++|+|+.+-+.+. .+++|..|.+.+ +++.++-+ ....+++|++|.+-+| ....-+. -
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yv 135 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYV 135 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCC-chhcccCceeEE
Confidence 456778999999999999998866665 456799999998 46655532 3567889999999998 4443332 2
Q ss_pred ccCCCCCcccCCeeecCc
Q 047511 364 MGKLACLLTLCSFVVGKD 381 (471)
Q Consensus 364 ~~~l~~L~~L~~~~~~~~ 381 (471)
+.++++|++|++..+...
T Consensus 136 l~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred EEecCcceEeehhhhhHH
Confidence 678999999998766543
No 91
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.066 Score=53.01 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEeeCchhHHHH
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILTKDDCLQVF 117 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT~~ea~~Lf 117 (471)
+++-++|+|++-.-....++.+...+.......++|++..+..++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 4556899999944333356666666655455667777633333443
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.72 E-value=0.083 Score=53.23 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=16.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+||+++++.+.+.
T Consensus 146 G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 146 GLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 799999999999998765
No 93
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.62 E-value=0.022 Score=28.87 Aligned_cols=16 Identities=50% Similarity=0.796 Sum_probs=7.3
Q ss_pred cceEEEecCCCCCcCC
Q 047511 298 HLRHLDLSETDIQILP 313 (471)
Q Consensus 298 ~L~~L~l~~~~l~~lp 313 (471)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 94
>PRK05642 DNA replication initiation factor; Validated
Probab=94.60 E-value=0.1 Score=48.28 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||+||.++++.+..
T Consensus 55 G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 55 GVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999987654
No 95
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.59 E-value=1.6 Score=48.20 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcCCCCC-------CCcC------------CchhHHhhhccCCChhhHHHHhHhcc
Q 047511 134 KDISEKIVIRCNGLPLPAKTLVGLLRGENDP-------LVSC------------DIIPALRLSYHYLSPNLKRCFAYCSL 194 (471)
Q Consensus 134 ~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~-------~~~~------------~i~~~l~~sy~~L~~~~k~~fl~~~~ 194 (471)
.+.+..|+++-+|.|+-+.-+-..+....-- .|.. ++.+.+..-.+.||...|...-..||
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~ 319 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAAC 319 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4678999999999999999888888875211 1111 12234777889999999999999999
Q ss_pred CCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCccccc-----C--CCCC-ccchhhhHHHHHHHh
Q 047511 195 FPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQS-----S--SDPC-RFLMHDLINDLAQWA 265 (471)
Q Consensus 195 f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~--~~~~-~~~mhdlv~~~a~~~ 265 (471)
+...++ .+.+-..|.. ....++...++.|.....+..+ . .... +--.||.+++.+-..
T Consensus 320 iG~~F~--l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 320 IGNRFD--LDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred hCccCC--HHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhcc
Confidence 976544 5666555421 1234444445555444333311 1 1111 225788888887554
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.59 E-value=0.075 Score=54.08 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+|+.++++.+...
T Consensus 151 G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 151 GMGKTHLLKAAKNYIESN 168 (450)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 799999999999987653
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.51 E-value=0.069 Score=52.95 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|+++++.....
T Consensus 166 GtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 166 GTGKTLLAKAVAHETNAT 183 (364)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 789999999999876544
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.45 E-value=0.18 Score=49.26 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++.+.
T Consensus 46 GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 46 GSGKTAAVRALARELY 61 (337)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7999999999998764
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.11 Score=51.02 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcE-EEee-----------------------CchhHHHHHhhhcCCCC
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQ-IILT-----------------------KDDCLQVFTQHCLGMRD 126 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsr-iiiT-----------------------~~ea~~Lf~~~af~~~~ 126 (471)
.+++-++|+|++-..+....+.+...+..-..... |++| .++..+.+...+. ..
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~- 216 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQ- 216 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-cc-
Confidence 35667899999954444455555555543222333 3444 4455555554221 11
Q ss_pred CCCCchHHHHHHHHHHHcCCCchHHHHH
Q 047511 127 FSMQQSLKDISEKIVIRCNGLPLPAKTL 154 (471)
Q Consensus 127 ~~~~~~~~~~~~~iv~~c~GlPLal~~~ 154 (471)
. --.+....+++.++|.|.....+
T Consensus 217 ---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 217 ---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 11344677889999999765443
No 100
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.40 E-value=0.017 Score=54.14 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILL 25 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~ 25 (471)
|+||||||+.+++++..+|...+++
T Consensus 79 G~GKTtLa~~i~~~i~~~~~~~~V~ 103 (274)
T cd01133 79 GVGKTVLIMELINNIAKAHGGYSVF 103 (274)
T ss_pred CCChhHHHHHHHHHHHhcCCCEEEE
Confidence 7899999999999998877554443
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.21 E-value=0.087 Score=48.12 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=17.3
Q ss_pred CCccchHHHHHHHHHHHhhh
Q 047511 1 MIGETNLSVSIEMLVNKLAS 20 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~ 20 (471)
|.|||.|..++++.+.+..+
T Consensus 44 G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 44 GLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp TSSHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhccc
Confidence 79999999999999877543
No 102
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.21 E-value=0.028 Score=51.38 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCC--CcccccchhhhccccCCeeecCCCCCCccCccc---ccCCC
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKC--NQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG---MGKLA 368 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~---~~~l~ 368 (471)
..+..|.+|++.+..++.+ ..+..|++|+.|.++.| .-...++--.-++++|++|++++| .++. +.+ +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhc
Confidence 3455666777777766654 34557889999999997 455667666677799999999999 5543 333 55677
Q ss_pred CCcccCCeeecCc
Q 047511 369 CLLTLCSFVVGKD 381 (471)
Q Consensus 369 ~L~~L~~~~~~~~ 381 (471)
+|..|++++++..
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 7778887766544
No 103
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.082 Score=53.54 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.++.-++|+|+|-.-....++.+...+..-......|.+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILa 157 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILA 157 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEee
Confidence 456678999999554446677776666443334444434
No 104
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.16 E-value=0.069 Score=48.23 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+||||||.-+++.+...|
T Consensus 60 G~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 60 GLGKTTLARIIANELGVNF 78 (233)
T ss_dssp TSSHHHHHHHHHHHCT--E
T ss_pred ccchhHHHHHHHhccCCCe
Confidence 7999999999998876655
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.07 E-value=0.35 Score=51.33 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEe
Q 047511 62 LQEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIIL 108 (471)
Q Consensus 62 ~~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriii 108 (471)
.+..+.+.+++++++++-|+.|..+...|+.+...+....+...|+|
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLI 327 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEE
Confidence 46678889999999999999988877888888777666666555555
No 106
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.03 E-value=0.47 Score=51.33 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.3
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||+.++.|.+.+.+..
T Consensus 791 GTGKTATVK~VLrELqeea 809 (1164)
T PTZ00112 791 GTGKTATVYSVIQLLQHKT 809 (1164)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7899999999999886644
No 107
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.12 Score=53.71 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|+||+-.-....++.+...+......+++|.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 456679999999444445566666666554445555544
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.27 Score=50.27 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++=++|+|+|-.-.....+.+...+..-.+..++|++
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 355667999999433334455666665554456677666
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.91 E-value=0.16 Score=54.04 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++.-++|||+|-.-....+..+...+..-....++|+|
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45557889999444344567776665544456676666
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.63 E-value=0.031 Score=55.02 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=20.4
Q ss_pred CCccchHHHHHHHHHHHh-hhhHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKL-ASEAILLFSL 28 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~-~~~~~~~~~l 28 (471)
|.|||||++.+++.+... |+..+++.-+
T Consensus 178 g~GKTtL~~~i~~~I~~nhfdv~v~VlLI 206 (415)
T TIGR00767 178 KAGKTVLLQKIAQAITRNHPEVELIVLLI 206 (415)
T ss_pred CCChhHHHHHHHHhhcccCCceEEEEEEc
Confidence 689999999999997765 5444444333
No 111
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.2 Score=49.51 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-++|+||+-..+......+...+..-..++.+|++
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 56678999999555555556666555443344545544
No 112
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.19 Score=50.50 Aligned_cols=47 Identities=11% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEeeCchhHHHH
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILTKDDCLQVF 117 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT~~ea~~Lf 117 (471)
.+++-++|+|++-.-...+++.+...+....+.+.+|++.++..+++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 34556789999944333467777776665555677666533333333
No 113
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.15 Score=55.29 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|||++-.......+.|...+-.-....++|++
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 467789999999554445666666555443445566555
No 114
>PRK06921 hypothetical protein; Provisional
Probab=93.45 E-value=0.082 Score=49.80 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+..+
T Consensus 127 G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 127 GSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCcHHHHHHHHHHHHhhh
Confidence 799999999999987664
No 115
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.29 Score=51.46 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|+|+|-.-.......+...+..-..+.++|++
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 456678999999443334555666555444445666665
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.37 E-value=0.34 Score=51.35 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+.
T Consensus 48 GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 48 GVGKTTIARILAKSLN 63 (709)
T ss_pred CCcHHHHHHHHHHHhc
Confidence 8999999999998754
No 117
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.36 E-value=0.043 Score=45.29 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 8 G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 8 GTGKTTLARALAQYLG 23 (132)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCeeHHHHHHHhhcc
Confidence 7899999999998864
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.32 Score=51.06 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-+||+|++-.-....++.|...+..-.....+|++
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILa 155 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLA 155 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEe
Confidence 456678999999443335556666655433334445444
No 119
>PRK09087 hypothetical protein; Validated
Probab=93.32 E-value=0.33 Score=44.53 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=11.9
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||+.+.++.
T Consensus 54 GsGKThLl~~~~~~ 67 (226)
T PRK09087 54 GSGKTHLASIWREK 67 (226)
T ss_pred CCCHHHHHHHHHHh
Confidence 78999999987754
No 120
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.28 Score=47.47 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++=++|+||+-..+...+..+...+..-.+++.+|++
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~ 129 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILL 129 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 34445556665334446788888877766678888776
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.22 E-value=0.23 Score=46.73 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 52 GtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 52 GTGKTTVARILGKLFK 67 (261)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998764
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=93.15 E-value=0.31 Score=46.48 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++++...
T Consensus 69 GtGKT~lAr~la~~~~ 84 (287)
T CHL00181 69 GTGKTTVALKMADILY 84 (287)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999988753
No 123
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.15 E-value=0.18 Score=53.27 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|+|+|-.-.....+.+...+-.-....++|.+
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 467778999999544445566665555443334455444
No 124
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.11 E-value=0.0051 Score=55.10 Aligned_cols=81 Identities=21% Similarity=0.160 Sum_probs=55.5
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
+......+.||++.|++..+-..++.++.|..||++. +.+..+|..++.+..++++++..| .....|.++++++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 3444566677777777666666666677777777776 466777777777777777777666 66667777777777776
Q ss_pred cCC
Q 047511 373 LCS 375 (471)
Q Consensus 373 L~~ 375 (471)
++.
T Consensus 116 ~e~ 118 (326)
T KOG0473|consen 116 NEQ 118 (326)
T ss_pred hhh
Confidence 643
No 125
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.014 Score=53.69 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=60.0
Q ss_pred CCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc--ccCCCCCccc
Q 047511 296 LKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG--MGKLACLLTL 373 (471)
Q Consensus 296 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~--~~~l~~L~~L 373 (471)
+.+.+.|+..||+++.+ .-+..++.|++|.|+- +.++.+- .+..+++|+.|.|+.| .+..+-+- +.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 45667788888888866 3456788899999988 5777773 4788899999999988 55555432 6678888888
Q ss_pred CCeeecCc
Q 047511 374 CSFVVGKD 381 (471)
Q Consensus 374 ~~~~~~~~ 381 (471)
.+-.+..+
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 76655443
No 126
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.04 E-value=0.22 Score=50.92 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.8
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||+||.++++.+.+..
T Consensus 158 G~GKThL~~ai~~~~~~~~ 176 (450)
T PRK00149 158 GLGKTHLLHAIGNYILEKN 176 (450)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 7999999999999987654
No 127
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.97 E-value=0.53 Score=44.84 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+++++.+..
T Consensus 68 GTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 68 GTGKTTVALRMAQILHR 84 (284)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999887654
No 128
>PRK10536 hypothetical protein; Provisional
Probab=92.63 E-value=0.27 Score=45.61 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=29.2
Q ss_pred HcCCCcE---EEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 69 QMSRKKF---LLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 69 ~L~~kr~---LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++++.+ +||+|.+-+.+..+...+... .+.||++|+|
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~ 209 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVN 209 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEe
Confidence 5666654 999999977766777666655 4689999999
No 129
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.61 E-value=0.14 Score=53.54 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.8
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||.|+.++++.+...
T Consensus 324 GsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 324 GLGKTHLLHAIGHYARRL 341 (617)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 789999999999987653
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.28 Score=51.86 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-+||+|++-.-.....+.|...+..-...+.+|++
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 45668999999333334556666555444455666665
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.33 Score=50.72 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+.
T Consensus 48 GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 48 GIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8999999999999874
No 132
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.41 E-value=0.09 Score=49.16 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||.||.++.+.+..
T Consensus 115 G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 115 GVGKTHLAIAIGNELLK 131 (254)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999999873
No 133
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=1.2 Score=44.02 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCccchHHHHHHHHHHHhhhhHH-HHHHH-----HHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHc--CC
Q 047511 1 MIGETNLSVSIEMLVNKLASEAI-LLFSL-----QEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQM--SR 72 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~-~~~~l-----q~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~ 72 (471)
|.|||+.++.|.+++.+...... .+..- ..+++..+.. .+. ..+.....-.+.-..+.+.+ .+
T Consensus 52 GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~------~~~---~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 52 GTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN------KLG---KVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred CCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH------HcC---CCCCCCCchHHHHHHHHHHHHhcC
Confidence 78999999999999988755431 11111 1233333332 111 22222344455555666666 46
Q ss_pred CcEEEEEecC
Q 047511 73 KKFLLVLDDV 82 (471)
Q Consensus 73 kr~LiVLDDV 82 (471)
+.+.||||++
T Consensus 123 ~~~IvvLDEi 132 (366)
T COG1474 123 KTVIVILDEV 132 (366)
T ss_pred CeEEEEEcch
Confidence 8999999999
No 134
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.25 Score=48.94 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=17.8
Q ss_pred CCccchHHHHHHHHHHHhhhh
Q 047511 1 MIGETNLSVSIEMLVNKLASE 21 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~ 21 (471)
|.|||.|+.++.+......+.
T Consensus 123 GlGKTHLl~Aign~~~~~~~~ 143 (408)
T COG0593 123 GLGKTHLLQAIGNEALANGPN 143 (408)
T ss_pred CCCHHHHHHHHHHHHHhhCCC
Confidence 789999999999998776553
No 135
>PRK04132 replication factor C small subunit; Provisional
Probab=92.22 E-value=0.64 Score=50.71 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=23.2
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+.-++|+|++-.-...+...+...+......+++|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEE
Confidence 4578999999544444566666555544455666665
No 136
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.09 E-value=0.37 Score=48.08 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-++|+||+-.........+...+....++..+|++
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 45557888999444334445555555444456666666
No 137
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.02 E-value=0.07 Score=44.10 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|+.++..+...
T Consensus 12 G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 12 GSGKTTLARALARELGPP 29 (148)
T ss_pred CCcHHHHHHHHHhccCCC
Confidence 799999999999876554
No 138
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=0.24 Score=50.73 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+.
T Consensus 46 GtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 46 GTGKTTVARILAKSLN 61 (472)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7999999999998764
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.85 E-value=0.28 Score=49.92 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||+||.++++.+.+..
T Consensus 140 G~GKTHLl~ai~~~l~~~~ 158 (440)
T PRK14088 140 GLGKTHLLQSIGNYVVQNE 158 (440)
T ss_pred CCcHHHHHHHHHHHHHHhC
Confidence 7999999999999987654
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.85 E-value=0.57 Score=45.36 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+++++..
T Consensus 53 G~GKT~la~~l~~~~ 67 (316)
T PHA02544 53 GTGKTTVAKALCNEV 67 (316)
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999999998865
No 141
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.84 E-value=0.094 Score=51.31 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.8
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||++.+++.+..+
T Consensus 143 GtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 143 RAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 689999999999988664
No 142
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.56 E-value=0.19 Score=44.11 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||||.++++..+...
T Consensus 34 G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 34 GSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 899999999999998776
No 143
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.53 E-value=0.7 Score=40.94 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+.+-+||+||+-.-....++.+...+....+.+.+|++
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 355668899999433334566666666554445556555
No 144
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.35 E-value=0.93 Score=43.62 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
|+|||.||.++++.+...- ..+.+.+. ..++.++... .. ..+.. +.+ +.++ +-=|||||
T Consensus 166 G~GKThLa~Aia~~l~~~g-~~v~~~~~-~~l~~~lk~~------~~--------~~~~~---~~l-~~l~-~~dlLiID 224 (306)
T PRK08939 166 GVGKSYLLAAIANELAKKG-VSSTLLHF-PEFIRELKNS------IS--------DGSVK---EKI-DAVK-EAPVLMLD 224 (306)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCEEEEEH-HHHHHHHHHH------Hh--------cCcHH---HHH-HHhc-CCCEEEEe
Confidence 8999999999999976432 11212222 1222332210 00 01111 122 2333 44578999
Q ss_pred cCCCCCcchhhh--ccccc-cCC-CCCcEEEee
Q 047511 81 DVWNENYSDWDS--LSLPF-EAG-APGCQIILT 109 (471)
Q Consensus 81 DVw~~~~~~~~~--l~~~~-~~~-~~gsriiiT 109 (471)
|+--+....|.. +...+ ... ..+-.+|+|
T Consensus 225 DiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~T 257 (306)
T PRK08939 225 DIGAEQMSSWVRDEVLGVILQYRMQEELPTFFT 257 (306)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 996555667753 44443 222 244556677
No 145
>PRK09183 transposase/IS protein; Provisional
Probab=91.13 E-value=0.31 Score=45.71 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||.++.+...
T Consensus 112 GtGKThLa~al~~~a~ 127 (259)
T PRK09183 112 GVGKTHLAIALGYEAV 127 (259)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999987654
No 146
>PRK12377 putative replication protein; Provisional
Probab=91.04 E-value=0.36 Score=44.86 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+..+
T Consensus 111 GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 111 GTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999988654
No 147
>PRK08181 transposase; Validated
Probab=90.96 E-value=0.24 Score=46.59 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||.||.++.+.+.++
T Consensus 116 GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 116 GGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCcHHHHHHHHHHHHHHc
Confidence 799999999999987554
No 148
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.91 E-value=0.17 Score=28.65 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=12.9
Q ss_pred CCcceEEEecCCCCCcCCcc
Q 047511 296 LKHLRHLDLSETDIQILPES 315 (471)
Q Consensus 296 l~~L~~L~l~~~~l~~lp~~ 315 (471)
|++|++|+|++|.++.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777766654
No 149
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.91 E-value=0.17 Score=28.65 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=12.9
Q ss_pred CCcceEEEecCCCCCcCCcc
Q 047511 296 LKHLRHLDLSETDIQILPES 315 (471)
Q Consensus 296 l~~L~~L~l~~~~l~~lp~~ 315 (471)
|++|++|+|++|.++.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777766654
No 150
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=0.7 Score=48.87 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+-.
T Consensus 48 GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 48 GVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 89999999999988643
No 151
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.73 E-value=1.5 Score=42.33 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++++.+.
T Consensus 48 G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 48 GTGKTTAALALARELY 63 (319)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 7899999999988763
No 152
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=90.54 E-value=0.052 Score=49.84 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=16.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||||.+.+.....+.|
T Consensus 23 GSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 23 GSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CCCHHHHHHHHHHhhcccC
Confidence 6899999999998877766
No 153
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.50 E-value=0.65 Score=42.56 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||+++++...
T Consensus 52 G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 52 GSGRSHLLQALVADAS 67 (227)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999998753
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.48 E-value=0.22 Score=43.78 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||.||.++.+....
T Consensus 57 G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 57 GTGKTHLAVAIANEAIR 73 (178)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 79999999999988655
No 155
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.16 E-value=0.95 Score=47.78 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++.-++|||+|-.-.......+...+..-....++|++
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 45568899999554445566666555443344555544
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.12 E-value=1.2 Score=43.32 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|.+++..+-.
T Consensus 32 G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 32 GIGKRALAERLAAALLC 48 (328)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 89999999999988643
No 157
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.03 E-value=1.1 Score=47.34 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+-.
T Consensus 56 GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 56 GVGKTTTARILARALNY 72 (598)
T ss_pred CCCHHHHHHHHHHhhCc
Confidence 79999999999998654
No 158
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.93 E-value=0.23 Score=48.63 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCCCcEEEccCCCcccccchh--hhccccCCeeecCCCCCCccCccc-cc-CCCCCcccCCeeecCcccccccccc--c
Q 047511 318 TLYNLRTLMLQKCNQLAKMCSD--MGNLLKLHHLDNSDVDASEEIPKG-MG-KLACLLTLCSFVVGKDIGSALQELK--L 391 (471)
Q Consensus 318 ~l~~L~~L~l~~~~~~~~lP~~--~~~l~~L~~L~l~~~~~~~~lP~~-~~-~l~~L~~L~~~~~~~~~~~~~~~l~--l 391 (471)
++..||+|+.++|+.+...+-. ..+..+|++|.+.+|..+...--. ++ +...|+.+++..+.......+..+. -
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 4566677777776665443321 234466777777776543322111 22 4556666654433321111223332 3
Q ss_pred ccccCceEEcccCCCCCh-hhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeec
Q 047511 392 LHLHGALEISKLENVRDV-SEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYG 465 (471)
Q Consensus 392 ~~L~~~L~~~~l~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 465 (471)
+.|+ .++++.+...... ...+...-.++..|..|.|+.++ .+....++.+..+++|+.++|.++.
T Consensus 372 ~~lr-~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p--------~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLR-VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP--------LITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhc-cCChhhhhhhhhhhhhhhhhccccccccceeeecCCC--------CchHHHHHHHhhCcccceeeeechh
Confidence 4444 4545433221111 01112222445666777776444 2445556666667777777776654
No 159
>PRK06526 transposase; Provisional
Probab=89.78 E-value=0.33 Score=45.34 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||+||.++.+....
T Consensus 108 GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 108 GTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 79999999999987654
No 160
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.68 E-value=0.9 Score=44.72 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+..
T Consensus 46 G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 46 GTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 79999999999988653
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.56 E-value=0.31 Score=45.18 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+...
T Consensus 109 GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 109 GTGKNHLAAAICNELLLR 126 (244)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 799999999999987653
No 162
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.40 E-value=0.37 Score=48.29 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++..|+||.| ....+|+.....+.+.++. +|+||
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~it 127 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLIT 127 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEE
Confidence 8899999999 6669999988888877777 89988
No 163
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=1.2 Score=46.38 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+..
T Consensus 48 G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 48 GVGKTTLARILAKSLNC 64 (527)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 89999999999988643
No 164
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.01 E-value=0.24 Score=28.03 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=15.3
Q ss_pred CCCcceEEEEeecCCCCC
Q 047511 453 HQNLERFCISGYGGTKCR 470 (471)
Q Consensus 453 ~~~L~~L~L~~~~~~~~P 470 (471)
+++|++|+|++|.+..+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 357899999999998887
No 165
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.01 E-value=0.24 Score=28.03 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=15.3
Q ss_pred CCCcceEEEEeecCCCCC
Q 047511 453 HQNLERFCISGYGGTKCR 470 (471)
Q Consensus 453 ~~~L~~L~L~~~~~~~~P 470 (471)
+++|++|+|++|.+..+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 357899999999998887
No 166
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.93 E-value=1.1 Score=45.55 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=15.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+...
T Consensus 151 G~GKTHLl~Ai~~~l~~~ 168 (445)
T PRK12422 151 GSGKTHLMQAAVHALRES 168 (445)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999988653
No 167
>PRK06620 hypothetical protein; Validated
Probab=88.67 E-value=0.7 Score=41.97 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||.++.+..
T Consensus 54 G~GKThLl~a~~~~~ 68 (214)
T PRK06620 54 SSGKTYLTKIWQNLS 68 (214)
T ss_pred CCCHHHHHHHHHhcc
Confidence 799999999876543
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=88.54 E-value=0.35 Score=43.37 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=25.2
Q ss_pred HcCCC---cEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 69 QMSRK---KFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 69 ~L~~k---r~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++++ ..+||+|++-+....++..+.... |.|||||++
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~ 152 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIIT 152 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEE
T ss_pred hhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEe
Confidence 34554 469999999777777888777664 789999999
No 169
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.33 E-value=1.1 Score=49.62 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCC-----------CCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGA-----------PGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~-----------~gsriiiT 109 (471)
...-+|+||++-..++..++.+...+..+. ..+-||+|
T Consensus 667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 566899999996555566666655554332 45778888
No 170
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=2 Score=43.62 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=22.5
Q ss_pred HHHHHcCCCcEEEEEecCCCCCcchhhhccccc
Q 047511 65 KLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPF 97 (471)
Q Consensus 65 ~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~ 97 (471)
...+.-+..--.||+||+ +..-+|-.++..|
T Consensus 590 ~F~DAYkS~lsiivvDdi--ErLiD~vpIGPRf 620 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDI--ERLLDYVPIGPRF 620 (744)
T ss_pred HHHHhhcCcceEEEEcch--hhhhcccccCchh
Confidence 344555677788999999 7667887776654
No 171
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.04 E-value=0.28 Score=39.80 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+.+++..
T Consensus 9 gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 9 GSGKSTLAKELAERL 23 (121)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 789999999999875
No 172
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=87.31 E-value=5 Score=36.94 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=43.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
|.|||+|++++.+....+- .-++.+.+.-+ .++..+.+.+++ +..||+|.+|
T Consensus 62 GtGKSSlVkall~~y~~~G---LRlIev~k~~L-----------------------~~l~~l~~~l~~--~~~kFIlf~D 113 (249)
T PF05673_consen 62 GTGKSSLVKALLNEYADQG---LRLIEVSKEDL-----------------------GDLPELLDLLRD--RPYKFILFCD 113 (249)
T ss_pred CCCHHHHHHHHHHHHhhcC---ceEEEECHHHh-----------------------ccHHHHHHHHhc--CCCCEEEEec
Confidence 7899999999987765533 11222222222 222333333442 4579999999
Q ss_pred cCCC-CCcchhhhccccccCC----CCCcEEEee
Q 047511 81 DVWN-ENYSDWDSLSLPFEAG----APGCQIILT 109 (471)
Q Consensus 81 DVw~-~~~~~~~~l~~~~~~~----~~gsriiiT 109 (471)
|.-= ++......++..+..+ ...-.|.+|
T Consensus 114 DLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 114 DLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred CCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 9842 3234455555554432 223455566
No 173
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.23 E-value=0.99 Score=40.12 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||+|+++++.++..-
T Consensus 11 gsGKTtfakeLak~L~~~i 29 (261)
T COG4088 11 GSGKTTFAKELAKELRQEI 29 (261)
T ss_pred CCCchHHHHHHHHHHHHhh
Confidence 6899999999999877654
No 174
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=86.80 E-value=0.17 Score=41.45 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHhhh
Q 047511 1 MIGETNLSVSIEMLVNKLAS 20 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~ 20 (471)
|+||||+|++++..+...|.
T Consensus 9 G~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 9 GVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp -HHHHHHHHHHHHHTT--EE
T ss_pred ccHHHHHHHHHHHHcCCcee
Confidence 78999999999998776664
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.76 E-value=1.1 Score=47.62 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+-.
T Consensus 48 G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 48 GTGKTSSARILAKSLNC 64 (620)
T ss_pred CCChHHHHHHHHHHhcC
Confidence 79999999999998654
No 176
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=0.44 Score=49.84 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||+||+++++.+..
T Consensus 441 GsGKT~L~kal~~~~~k 457 (952)
T KOG0735|consen 441 GSGKTNLVKALFDYYSK 457 (952)
T ss_pred CCCHhHHHHHHHHHhcc
Confidence 79999999999998764
No 177
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.41 E-value=0.37 Score=39.38 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+++.+..
T Consensus 8 GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 8 GSGKTTIAKELAERL 22 (129)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999999886
No 178
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.35 E-value=0.19 Score=47.04 Aligned_cols=80 Identities=19% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCCcceEEEecCCCCCc---CCccccCCCCCcEEEccCCCcc---cccchhhhccccCCeeecCCCCCCcc-CcccccCC
Q 047511 295 DLKHLRHLDLSETDIQI---LPESVNTLYNLRTLMLQKCNQL---AKMCSDMGNLLKLHHLDNSDVDASEE-IPKGMGKL 367 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~---~~lP~~~~~l~~L~~L~l~~~~~~~~-lP~~~~~l 367 (471)
..+.++.|||.+|.|+. +..-+.+|+.|++|+++.|+.. +.+| --+.+|+.|-+.++..... .-..+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 35678899999999984 4445568999999999986433 3333 3456888998888743222 22234556
Q ss_pred CCCcccCCee
Q 047511 368 ACLLTLCSFV 377 (471)
Q Consensus 368 ~~L~~L~~~~ 377 (471)
+.++.|.++.
T Consensus 146 P~vtelHmS~ 155 (418)
T KOG2982|consen 146 PKVTELHMSD 155 (418)
T ss_pred hhhhhhhhcc
Confidence 6666664443
No 179
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.34 E-value=3 Score=41.79 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCccchHHHHHHHHHHHhhhhHH--HHHHH----HHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCC-
Q 047511 1 MIGETNLSVSIEMLVNKLASEAI--LLFSL----QEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRK- 73 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~--~~~~l----q~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k- 73 (471)
|.|||.+...|+.++.......+ .+... ...++..+.. .+....... .+..+..+.+..+..+.
T Consensus 185 Gtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~------~~~q~~~s~---~~~~~~~~~~~~h~~q~k 255 (529)
T KOG2227|consen 185 GTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS------SLLQDLVSP---GTGMQHLEKFEKHTKQSK 255 (529)
T ss_pred CcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH------HHHHHhcCC---chhHHHHHHHHHHHhccc
Confidence 68999999999998776554311 11111 1122222221 121111111 12255556666776553
Q ss_pred -cEEEEEecCCCCCc--chhhhccccccCC-CCCcEEEee
Q 047511 74 -KFLLVLDDVWNENY--SDWDSLSLPFEAG-APGCQIILT 109 (471)
Q Consensus 74 -r~LiVLDDVw~~~~--~~~~~l~~~~~~~-~~gsriiiT 109 (471)
-+++|+|.+ +.. ..-..+...|.|- -++||+|+-
T Consensus 256 ~~~llVlDEm--D~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 256 FMLLLVLDEM--DHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred ceEEEEechh--hHHhhcccceeeeehhcccCCcceeeee
Confidence 599999998 421 1112233334342 467777665
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=2.3 Score=45.77 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcE-EEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKF-LLVL 79 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LiVL 79 (471)
|||||-||++++..+-..-. .+..+ -+|+......+...+.+..+.. +-..-.++ -+..+++.| .|+|
T Consensus 531 GVGKTELAkaLA~~Lfg~e~---aliR~---DMSEy~EkHsVSrLIGaPPGYV-GyeeGG~L----TEaVRr~PySViLl 599 (786)
T COG0542 531 GVGKTELAKALAEALFGDEQ---ALIRI---DMSEYMEKHSVSRLIGAPPGYV-GYEEGGQL----TEAVRRKPYSVILL 599 (786)
T ss_pred cccHHHHHHHHHHHhcCCCc---cceee---chHHHHHHHHHHHHhCCCCCCc-eeccccch----hHhhhcCCCeEEEe
Confidence 89999999999987542110 01000 0122222222222233322211 12223333 344455766 8899
Q ss_pred ecCCCCCcchhhhccccccCC----CC-------CcEEEeeCchhHHHHHhh
Q 047511 80 DDVWNENYSDWDSLSLPFEAG----AP-------GCQIILTKDDCLQVFTQH 120 (471)
Q Consensus 80 DDVw~~~~~~~~~l~~~~~~~----~~-------gsriiiT~~ea~~Lf~~~ 120 (471)
|+|-..++.-.+-+..-++.+ +. .+-||.|..-.-+.+...
T Consensus 600 DEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 600 DEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred chhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 999655555555555555543 23 467888844444444433
No 181
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.14 E-value=1.7 Score=42.27 Aligned_cols=18 Identities=28% Similarity=0.078 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++.+...
T Consensus 193 GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 193 GTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCcHHHHHHHHHHHHHHC
Confidence 799999999999987553
No 182
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.10 E-value=0.36 Score=49.47 Aligned_cols=59 Identities=27% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCcceEEEecCC-CCCc--CCccccCCCCCcEEEccCC-Ccccccc----hhhhccccCCeeecCCC
Q 047511 296 LKHLRHLDLSET-DIQI--LPESVNTLYNLRTLMLQKC-NQLAKMC----SDMGNLLKLHHLDNSDV 354 (471)
Q Consensus 296 l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~lP----~~~~~l~~L~~L~l~~~ 354 (471)
++.|+.|.+.++ .+.. +-......++|+.|++++| ......| .....+.+|+.|+++.+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 455555555555 3332 3334455666666666652 2222221 12233455566666555
No 183
>PRK08118 topology modulation protein; Reviewed
Probab=86.09 E-value=0.39 Score=41.78 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+.+++...-
T Consensus 11 GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 11 GSGKSTLARQLGEKLNI 27 (167)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 78999999999987543
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.04 E-value=0.35 Score=49.74 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||++|+++++.+...
T Consensus 226 GTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 226 GCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcHHHHHHHHHHhhccc
Confidence 789999999999987554
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.95 E-value=0.76 Score=50.07 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.0
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccC
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEA 99 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~ 99 (471)
...-+|+||+|...+...+..+...+..
T Consensus 552 ~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 552 HPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 3456999999976666666666665543
No 186
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.73 E-value=3.5 Score=42.81 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-++|+|++-.-.....+.+...+..-.+.+++|++
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 45668899999444444555666555444455666555
No 187
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.72 E-value=0.68 Score=46.28 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||++|+++++....
T Consensus 175 GtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 175 GTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCChHHHHHHHHHHhCC
Confidence 78999999999987643
No 188
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.71 E-value=2.8 Score=43.13 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++-++|+|++..-.....+.+...+....+...+|++
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 456679999999433333455555555443344555554
No 189
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.67 E-value=3 Score=43.28 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.++.-++|+|+|-.-.......+...+..-.+.+++|++
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 356668899999443334555555555444445666655
No 190
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.59 E-value=10 Score=35.65 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=63.1
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCC---CCCCCcCC--------chhHHhhhc
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGE---NDPLVSCD--------IIPALRLSY 178 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~---~~~~~~~~--------i~~~l~~sy 178 (471)
.+|-.++..+.|-.-. ..--++-+.+|+++..|-|- +..++|+.- ........ ....|.+--
T Consensus 183 ~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPR---IAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~ 255 (332)
T COG2255 183 VEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPR---IANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDE 255 (332)
T ss_pred HHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcH---HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCccc
Confidence 4555566666653222 11123568899999999994 333334332 11111111 223344444
Q ss_pred cCCChhhHHHHhHhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccC
Q 047511 179 HYLSPNLKRCFAYCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSS 246 (471)
Q Consensus 179 ~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 246 (471)
.+|++..++.+..+.-.+.+..+-.+.+.... | ....+.|++-+.| |+..++++...
T Consensus 256 ~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l---g-----e~~~TiEdv~EPy---Liq~gfi~RTp 312 (332)
T COG2255 256 LGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL---G-----EDRDTIEDVIEPY---LIQQGFIQRTP 312 (332)
T ss_pred ccccHHHHHHHHHHHHHhCCCCccHHHHHHHh---c-----CchhHHHHHHhHH---HHHhchhhhCC
Confidence 56666666666666555555554444443321 1 2345677766666 67788888654
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=85.56 E-value=2.5 Score=44.99 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||+||+++++..
T Consensus 226 GTGKT~LAralA~e~ 240 (638)
T CHL00176 226 GTGKTLLAKAIAGEA 240 (638)
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998864
No 192
>PRK08727 hypothetical protein; Validated
Probab=85.53 E-value=1.6 Score=40.14 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||+||.++++...++
T Consensus 51 G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 51 GTGKTHLALALCAAAEQA 68 (233)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999886654
No 193
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.50 E-value=2.9 Score=42.71 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+-.
T Consensus 49 G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 49 GTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 79999999999988643
No 194
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.45 E-value=1.4 Score=46.49 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+-
T Consensus 48 G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 48 GVGKTSTARILAKALN 63 (576)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 7999999999998864
No 195
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.42 E-value=1.2 Score=41.29 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=21.4
Q ss_pred CcCCCCcceEEEecCCCCC-cCCc----cccCCCCCcEEEccCC
Q 047511 292 SFGDLKHLRHLDLSETDIQ-ILPE----SVNTLYNLRTLMLQKC 330 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~-~lp~----~i~~l~~L~~L~l~~~ 330 (471)
.+-++++|+..+|+.|.+. ..|+ .|+.-+.|..|.+++|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3445566666666666554 2332 3445556666666654
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.33 E-value=0.68 Score=46.31 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||+||+++++....
T Consensus 189 GTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 189 GTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 78999999999987543
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.16 E-value=3.9 Score=39.67 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++=.+|+|++-.........+...+-.-.++..+|++
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~ 143 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQ 143 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 55557779999554444555555555443445555555
No 198
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=85.08 E-value=1.9 Score=42.09 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++.+.+.
T Consensus 9 GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 9 AAGKSTLARSLSATLR 24 (340)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998875
No 199
>PRK10867 signal recognition particle protein; Provisional
Probab=84.98 E-value=0.9 Score=45.84 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||.|..++..+..+
T Consensus 110 GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 110 GAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 799999999888877655
No 200
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.85 E-value=2.2 Score=44.93 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++=++|+|++-.-.....+.|...+..-.....+|++
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 345558899999544445666666666554445555554
No 201
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.78 E-value=3 Score=43.79 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEeeCchhHHHH
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILTKDDCLQVF 117 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT~~ea~~Lf 117 (471)
.+++-++|+|++-.-....++.+...+..-.+...+|.+..+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 45666788999944434456666666654444556655544444443
No 202
>PF14516 AAA_35: AAA-like domain
Probab=84.74 E-value=17 Score=35.45 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=32.5
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCC
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGEN 162 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~ 162 (471)
.+|...|...+-... . ....++|...++|.|.=+..++..+....
T Consensus 203 ~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 203 PEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred HHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 566777776653211 1 12388999999999999999999997753
No 203
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=84.66 E-value=1.6 Score=37.88 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+.+++++.+.-
T Consensus 12 GaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 12 GAGKSTIGRALAKALNL 28 (172)
T ss_pred CCCHhHHHHHHHHHcCC
Confidence 68999999999988443
No 204
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=84.65 E-value=0.46 Score=42.34 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||.+++++..
T Consensus 14 G~GKSTLa~~La~~l~ 29 (216)
T COG1428 14 GAGKSTLAQALAEHLG 29 (216)
T ss_pred ccCHHHHHHHHHHHhC
Confidence 7899999999999854
No 205
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=83.96 E-value=0.66 Score=39.64 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.2
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||||+++++++....
T Consensus 12 GsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 12 GSGKTTLARALERRLFARG 30 (156)
T ss_dssp TSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 6899999999999887643
No 206
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.95 E-value=4.3 Score=40.22 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+++.+.+..
T Consensus 49 G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 49 GVGKTTCARILARKINQ 65 (367)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 78999999999887654
No 207
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=83.91 E-value=0.97 Score=45.55 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||.|..++..+.
T Consensus 109 GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 109 GSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7999999999888764
No 208
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.91 E-value=4.3 Score=44.62 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++=++|||++-.......+.|...+..-...+.+|++
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 355557889999544445666666666554456666655
No 209
>PRK12678 transcription termination factor Rho; Provisional
Probab=83.90 E-value=0.3 Score=50.31 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
+.|||||+..+++.+...
T Consensus 426 ~aGKTtLL~~IAn~i~~n 443 (672)
T PRK12678 426 KAGKTTILQNIANAITTN 443 (672)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 579999999999987653
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=0.93 Score=43.07 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCc--
Q 047511 1 MIGETNLSVSIEMLVNKL----ASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKK-- 74 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~----~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-- 74 (471)
|-|||+|.|++++++.-. +.++..+.----.+++....+ ....+..+-+.|.+..+++.
T Consensus 187 GTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE---------------SgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 187 GTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE---------------SGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred CCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh---------------hhhHHHHHHHHHHHHHhCCCcE
Confidence 689999999999995443 222222222223344444321 12334455556777776654
Q ss_pred EEEEEecC
Q 047511 75 FLLVLDDV 82 (471)
Q Consensus 75 ~LiVLDDV 82 (471)
+++.+|.|
T Consensus 252 VfvLIDEV 259 (423)
T KOG0744|consen 252 VFVLIDEV 259 (423)
T ss_pred EEEEeHHH
Confidence 56678888
No 211
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.99 E-value=0.61 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=15.4
Q ss_pred CCCcceEEEEeecCCCCC
Q 047511 453 HQNLERFCISGYGGTKCR 470 (471)
Q Consensus 453 ~~~L~~L~L~~~~~~~~P 470 (471)
+++|+.|.+++|+++++|
T Consensus 1 P~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 1 PPSLKELNVSNNQLTSLP 18 (26)
T ss_pred CcccceeecCCCccccCc
Confidence 357899999999999988
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=82.67 E-value=7.7 Score=35.56 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
|.||+.|+|++.+.+..+... ++.+.+.-+.++. .+.+.++. ...||.|..|
T Consensus 95 GtGKSSLVKA~~~e~~~~glr---LVEV~k~dl~~Lp-----------------------~l~~~Lr~--~~~kFIlFcD 146 (287)
T COG2607 95 GTGKSSLVKALLNEYADEGLR---LVEVDKEDLATLP-----------------------DLVELLRA--RPEKFILFCD 146 (287)
T ss_pred CCChHHHHHHHHHHHHhcCCe---EEEEcHHHHhhHH-----------------------HHHHHHhc--CCceEEEEec
Confidence 789999999999988776543 2222221111111 11112222 4689999999
Q ss_pred cCC-CCCcchhhhccccccCC--CCCcEEEee
Q 047511 81 DVW-NENYSDWDSLSLPFEAG--APGCQIILT 109 (471)
Q Consensus 81 DVw-~~~~~~~~~l~~~~~~~--~~gsriiiT 109 (471)
|.- +++......++..+..+ +.-.-||+.
T Consensus 147 DLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~Y 178 (287)
T COG2607 147 DLSFEEGDDAYKALKSALEGGVEGRPANVLFY 178 (287)
T ss_pred CCCCCCCchHHHHHHHHhcCCcccCCCeEEEE
Confidence 984 33335566666666544 233445554
No 213
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.50 E-value=3 Score=36.62 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.+.++
T Consensus 10 GaGK~T~A~~La~~ 23 (178)
T COG0563 10 GAGKSTLAKKLAKK 23 (178)
T ss_pred CCCHHHHHHHHHHH
Confidence 78999999999988
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.24 E-value=0.91 Score=39.71 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=16.1
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||+|+++++.+...+
T Consensus 17 GsGKst~a~~l~~~l~~~~ 35 (176)
T PRK05541 17 GSGKTTIAKALYERLKLKY 35 (176)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 6899999999999886543
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.12 E-value=0.91 Score=40.62 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||.+..++.....+
T Consensus 11 GvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 11 GVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCchHhHHHHHHHHHhhc
Confidence 799999999888886654
No 216
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.01 E-value=0.5 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=22.9
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++-+||+|++.--+..++..+...... .|+|+|..
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred cccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 345999999976666677776665543 57899888
No 217
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=81.72 E-value=1.4 Score=45.65 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||+||+++++..
T Consensus 98 GtGKT~la~alA~~~ 112 (495)
T TIGR01241 98 GTGKTLLAKAVAGEA 112 (495)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998764
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=81.68 E-value=1 Score=35.81 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+|||+||..++..+.+..
T Consensus 8 G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 8 GIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 7999999999887765544
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.36 E-value=3.7 Score=39.75 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||+|+|.++++.+-.
T Consensus 36 G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 36 GLGKRAVALALAEHVLA 52 (319)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 79999999999987643
No 220
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.31 E-value=6.1 Score=42.47 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+-
T Consensus 50 GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 50 GTGKTSVAKIFANALN 65 (725)
T ss_pred CCcHHHHHHHHHHHhc
Confidence 8999999999998764
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.90 E-value=1.8 Score=42.96 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||++..++..+.
T Consensus 251 GvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 251 GVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7999999999987754
No 222
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=80.64 E-value=7.1 Score=40.23 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+-++..+-.
T Consensus 48 GvGKTt~Ari~AkalNC 64 (515)
T COG2812 48 GVGKTTIARILAKALNC 64 (515)
T ss_pred CcCchhHHHHHHHHhcC
Confidence 79999999999987543
No 223
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.61 E-value=1.3 Score=46.68 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+||||||.-++++
T Consensus 336 GlGKTTLAHViAkq 349 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQ 349 (877)
T ss_pred CCChhHHHHHHHHh
Confidence 79999999988875
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.44 E-value=3.7 Score=37.88 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||+||.++++.+..
T Consensus 55 G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 55 GAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999987664
No 225
>PHA00729 NTP-binding motif containing protein
Probab=80.21 E-value=0.95 Score=41.22 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||.++.+.+.
T Consensus 27 GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 27 GSGKTTYALKVARDVF 42 (226)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999998764
No 226
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.03 E-value=6.5 Score=41.81 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++=++|+|++-.-....++.+...+..-...+.+|++
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 44557799998443334566666665544455666655
No 227
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=79.95 E-value=3.1 Score=39.16 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=18.3
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL 28 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l 28 (471)
|+||||+|.+++.....+......+.++
T Consensus 40 G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 40 GVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 6899999999987765443333333333
No 228
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=79.80 E-value=1 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||||+..+.+.+..+
T Consensus 153 G~GKt~Ll~~~~~~~~~~ 170 (461)
T PRK12597 153 GVGKTVLMMELIFNISKQ 170 (461)
T ss_pred CCChhHHHHHHHHHHHhh
Confidence 799999999998887754
No 229
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=79.69 E-value=0.51 Score=41.18 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
+.||||+|..+....
T Consensus 11 ~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 11 RSGKSRFAERLAAQS 25 (170)
T ss_pred CccHHHHHHHHHHHc
Confidence 579999999987653
No 230
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=79.52 E-value=0.83 Score=43.09 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
+.||||+|+.+...+.+
T Consensus 11 ~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 11 CSGKTTRAKELKKYLEE 27 (270)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 57999999999987766
No 231
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=79.50 E-value=1.1 Score=32.44 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+++.+.+
T Consensus 9 gsGKst~~~~l~~~l 23 (69)
T cd02019 9 GSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998775
No 232
>PRK07261 topology modulation protein; Provisional
Probab=79.46 E-value=0.98 Score=39.40 Aligned_cols=25 Identities=8% Similarity=0.237 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHcCCCcEEEEEecCCC
Q 047511 58 ELGLLQEKLKNQMSRKKFLLVLDDVWN 84 (471)
Q Consensus 58 ~~~~~~~~l~~~L~~kr~LiVLDDVw~ 84 (471)
+.++....+.+.+.+.+ .|+|....
T Consensus 44 ~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 44 DDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred CHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 34566667777787776 78898844
No 233
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.45 E-value=4.8 Score=42.07 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|-||||+|+++++.....
T Consensus 478 GC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 478 GCGKTLLAKALANEAGMN 495 (693)
T ss_pred CcchHHHHHHHhhhhcCC
Confidence 679999999999985443
No 234
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=78.96 E-value=3.4 Score=40.05 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcC--CCcEEEEEecCCCCCcchhhhccccccC--CCCCcEEEee
Q 047511 59 LGLLQEKLKNQMS--RKKFLLVLDDVWNENYSDWDSLSLPFEA--GAPGCQIILT 109 (471)
Q Consensus 59 ~~~~~~~l~~~L~--~kr~LiVLDDVw~~~~~~~~~l~~~~~~--~~~gsriiiT 109 (471)
.++....+.+.|. ++|++||+||+-+-++++...+...... ..++..+|+.
T Consensus 156 ~~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~ 210 (325)
T PF07693_consen 156 VEELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILA 210 (325)
T ss_pred HHHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3435566666664 5899999999944333433333333322 2366666666
No 235
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.76 E-value=1.2 Score=37.89 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.6
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||++..+.+.+++.
T Consensus 15 GvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 15 GVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CccHHHHHHHHHHHHHhc
Confidence 799999999999998876
No 236
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.70 E-value=0.66 Score=46.88 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||++|+++++.....
T Consensus 227 GTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 227 GTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCCHHHHHHHHHHhhCCC
Confidence 789999999999976543
No 237
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=78.39 E-value=1.3 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||||.+.+.+.+++.
T Consensus 9 G~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 9 GVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhcc
Confidence 799999999999988764
No 238
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=78.18 E-value=1.7 Score=42.85 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|||||||.-+++.++...-
T Consensus 103 GIGKSTLLLQva~~lA~~~ 121 (456)
T COG1066 103 GIGKSTLLLQVAARLAKRG 121 (456)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 7999999999998877654
No 239
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=77.98 E-value=1.2 Score=36.51 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+++.+...+
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998764
No 240
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.45 E-value=2.3 Score=47.18 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCC----C-------CCcEEEeeC
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAG----A-------PGCQIILTK 110 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~----~-------~gsriiiT~ 110 (471)
...+|+||+|-..+...+..+...+..+ + ..+.||+|.
T Consensus 667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 3458999999666666666666655432 1 334588883
No 241
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.40 E-value=1.3 Score=36.82 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||+.+++..
T Consensus 9 G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 9 GTGKTTLARELAALL 23 (139)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999999999887
No 242
>PRK08233 hypothetical protein; Provisional
Probab=77.38 E-value=1.2 Score=39.05 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+.++..+.
T Consensus 13 GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 13 GGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 7899999999997653
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.24 E-value=3.3 Score=41.92 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||.|..++..+...
T Consensus 105 GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 105 GSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCcHHHHHHHHHHHHHHc
Confidence 799999999999887653
No 244
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=77.21 E-value=1.6 Score=38.04 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||++..++..+...
T Consensus 10 G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 10 GVGKTTTAAKLALYLKKK 27 (173)
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 789999999999877654
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=7.3 Score=40.53 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=36.2
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
|-|||.||+++++...--| +.-....+.+.+.+ ..++.+.+...+.-..-.+++++|
T Consensus 233 GCGKT~lA~AiAgel~vPf-----~~isApeivSGvSG------------------ESEkkiRelF~~A~~~aPcivFiD 289 (802)
T KOG0733|consen 233 GCGKTSLANAIAGELGVPF-----LSISAPEIVSGVSG------------------ESEKKIRELFDQAKSNAPCIVFID 289 (802)
T ss_pred CccHHHHHHHHhhhcCCce-----EeecchhhhcccCc------------------ccHHHHHHHHHHHhccCCeEEEee
Confidence 6799999999998754322 22222333333332 334444445555556788999999
Q ss_pred cC
Q 047511 81 DV 82 (471)
Q Consensus 81 DV 82 (471)
|+
T Consensus 290 eI 291 (802)
T KOG0733|consen 290 EI 291 (802)
T ss_pred cc
Confidence 98
No 246
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=77.07 E-value=3 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+.+.+.-..
T Consensus 172 G~GKTtlArlia~tsk~ 188 (554)
T KOG2028|consen 172 GTGKTTLARLIASTSKK 188 (554)
T ss_pred CCchHHHHHHHHhhcCC
Confidence 78999999999876444
No 247
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=76.95 E-value=1.3 Score=41.62 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=13.7
Q ss_pred HHHHHHHcCCCcEEEEEecC
Q 047511 63 QEKLKNQMSRKKFLLVLDDV 82 (471)
Q Consensus 63 ~~~l~~~L~~kr~LiVLDDV 82 (471)
++.+++ +++.+|||+||+
T Consensus 153 AE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 153 GEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHH--CCCCEEEEEcCh
Confidence 344444 589999999999
No 248
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.79 E-value=3.2 Score=33.76 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=31.8
Q ss_pred CcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
.|.++++|+.+.+.. .++.++ ..+.++.+|+.+.+.+ .+..++. .+.++++|+.+.+.. .+..++.. +..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence 345555666666653 355553 3455555666666654 2444443 234454566666643 23334433 34455
Q ss_pred CCcccC
Q 047511 369 CLLTLC 374 (471)
Q Consensus 369 ~L~~L~ 374 (471)
+|+.+.
T Consensus 82 ~l~~i~ 87 (129)
T PF13306_consen 82 NLKNID 87 (129)
T ss_dssp TECEEE
T ss_pred cccccc
Confidence 555443
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=76.79 E-value=1.7 Score=36.92 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|..+......
T Consensus 9 G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 9 GSGKTTLALQLALNIAT 25 (165)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999887654
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.69 E-value=3.6 Score=39.17 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||++..++......
T Consensus 204 GvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 204 GVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999998876543
No 251
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=76.69 E-value=0.99 Score=38.77 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||+++.+++.+...|
T Consensus 2 GsGKStvg~~lA~~L~~~f 20 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLGRPF 20 (158)
T ss_dssp TSSHHHHHHHHHHHHTSEE
T ss_pred CCcHHHHHHHHHHHhCCCc
Confidence 7899999999999976654
No 252
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.46 E-value=7.7 Score=31.42 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=45.5
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~ 366 (471)
...|..+++|+.+.+..+ +..++. .+.++..|+.+.+.. .+..++. .+..+++|+.+++..+ +..++.. +.+
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~ 102 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN 102 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT
T ss_pred hhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc--ccEEchhhhcC
Confidence 345778888999999885 777754 577777899999975 4444544 4556889999988654 4455554 444
Q ss_pred CCCCccc
Q 047511 367 LACLLTL 373 (471)
Q Consensus 367 l~~L~~L 373 (471)
. +|+.+
T Consensus 103 ~-~l~~i 108 (129)
T PF13306_consen 103 C-NLKEI 108 (129)
T ss_dssp --T--EE
T ss_pred C-CceEE
Confidence 3 55544
No 253
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=76.46 E-value=1.4 Score=44.71 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||||+..+......+
T Consensus 154 GvGKt~Ll~~i~~~~~~~ 171 (463)
T PRK09280 154 GVGKTVLIQELINNIAKE 171 (463)
T ss_pred CCChhHHHHHHHHHHHhc
Confidence 789999999988777654
No 254
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=76.05 E-value=4.3 Score=39.65 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|-|||.+.+++.+..
T Consensus 40 gTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 40 GTGKTYLVRQLLRKL 54 (438)
T ss_pred CCchhHHHHHHHhhc
Confidence 579999999999885
No 255
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.01 E-value=5.5 Score=39.67 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||.+..++..+..
T Consensus 184 GvGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGI 200 (388)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 89999999999887653
No 256
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=75.99 E-value=1.8 Score=32.92 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+++
T Consensus 9 G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 9 GVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999877655
No 257
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.92 E-value=3 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=17.2
Q ss_pred cEEEEEecCCCCCcchhhhcccccc
Q 047511 74 KFLLVLDDVWNENYSDWDSLSLPFE 98 (471)
Q Consensus 74 r~LiVLDDVw~~~~~~~~~l~~~~~ 98 (471)
.-+|+|||+-..+...+..+...+.
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHh
Confidence 3689999995555566666665553
No 258
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=75.88 E-value=8.4 Score=37.60 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||+|+|.+++..+-
T Consensus 34 G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 34 GMGDDALIYALSRWLM 49 (334)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 8999999999998864
No 259
>PRK06321 replicative DNA helicase; Provisional
Probab=75.75 E-value=5.3 Score=40.97 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=22.3
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH---HHHHhhhHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL---QEQIQSDLK 37 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l---q~~~l~~l~ 37 (471)
|+||||+|..++..+......+..+.++ .+++..+++
T Consensus 236 gmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rll 275 (472)
T PRK06321 236 AMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRII 275 (472)
T ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHH
Confidence 6899999999998875433333333333 344444443
No 260
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=75.34 E-value=1.5 Score=39.03 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHHHhhhhH---HHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEA---ILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLL 77 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~---~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~Li 77 (471)
|.||||+|+++...+....-.. ..+... .....+..........-.......+...+.+.+.+.++...+++.+-+
T Consensus 9 gSGKTTla~~L~~~L~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~i~~ 87 (194)
T PF00485_consen 9 GSGKTTLAKRLAQILNKRGIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALKNGGSIEI 87 (194)
T ss_dssp TSSHHHHHHHHHHHHTTCTTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSCEEE
T ss_pred CCCHHHHHHHHHHHhCccCcCccceeEEEee-cccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHhCCCcccc
Confidence 6899999999999886432110 000000 000000000000000001112233456777888888888777887666
Q ss_pred EEecC
Q 047511 78 VLDDV 82 (471)
Q Consensus 78 VLDDV 82 (471)
=.=|-
T Consensus 88 p~yd~ 92 (194)
T PF00485_consen 88 PIYDF 92 (194)
T ss_dssp EEEET
T ss_pred ccccc
Confidence 54444
No 261
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=74.99 E-value=14 Score=38.98 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+.+++.+-
T Consensus 48 GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 48 GTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7899999999998764
No 262
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=74.87 E-value=1.6 Score=47.33 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||++++..+.
T Consensus 498 GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 498 GVGKTEVTVQLSKALG 513 (758)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7999999999988763
No 263
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=74.85 E-value=1.9 Score=37.34 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+|.+++..+...
T Consensus 33 GsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 33 GSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 689999999999987553
No 264
>PRK10646 ADP-binding protein; Provisional
Probab=74.79 E-value=1.5 Score=37.28 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+++.+.+.+
T Consensus 38 GaGKTtf~rgl~~~L 52 (153)
T PRK10646 38 GAGKTTFSRGFLQAL 52 (153)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999999875
No 265
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=74.70 E-value=2.2 Score=41.74 Aligned_cols=17 Identities=6% Similarity=-0.175 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||.+|+++++.+.-
T Consensus 158 GcGKTllAraiA~elg~ 174 (413)
T PLN00020 158 GQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 68999999999988644
No 266
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=74.65 E-value=2.5 Score=38.32 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||.+++.....
T Consensus 29 GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 29 GTGKTNIAIQLAVETAG 45 (218)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999877643
No 267
>PRK05480 uridine/cytidine kinase; Provisional
Probab=74.63 E-value=1.6 Score=39.36 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.++..+
T Consensus 16 GsGKTTl~~~l~~~l 30 (209)
T PRK05480 16 GSGKTTVASTIYEEL 30 (209)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999999876
No 268
>CHL00095 clpC Clp protease ATP binding subunit
Probab=74.47 E-value=2.1 Score=47.35 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHcCCC-cEEEEEecCCCCCcchhhhccccccCC-----------CCCcEEEeeCchhHHH
Q 047511 66 LKNQMSRK-KFLLVLDDVWNENYSDWDSLSLPFEAG-----------APGCQIILTKDDCLQV 116 (471)
Q Consensus 66 l~~~L~~k-r~LiVLDDVw~~~~~~~~~l~~~~~~~-----------~~gsriiiT~~ea~~L 116 (471)
+.+.++.+ ..+|++|+|-..+..-+..+...+..+ -..+.+|+|..-.-+.
T Consensus 603 l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~ 665 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKV 665 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHH
Confidence 33444434 368999999555555566666555432 2356778884433333
No 269
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=74.25 E-value=1.7 Score=36.05 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+.+.+
T Consensus 32 GaGKTtl~~~l~~~l 46 (133)
T TIGR00150 32 GAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999999875
No 270
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=74.22 E-value=1.3 Score=44.86 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+|||||+..+......+
T Consensus 153 G~GKt~L~~~~~~~~~~~ 170 (461)
T TIGR01039 153 GVGKTVLIQELINNIAKE 170 (461)
T ss_pred CCChHHHHHHHHHHHHhc
Confidence 689999999998876554
No 271
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=74.20 E-value=4.2 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCCcchhhhccccccCCCCCcEEEeeCc
Q 047511 74 KFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILTKD 111 (471)
Q Consensus 74 r~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT~~ 111 (471)
+.+||+|..-+-.+.+...+... .|+|||||.|.+
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd 386 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGD 386 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCC
Confidence 46899999966555666655544 689999999944
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=73.61 E-value=1.8 Score=36.06 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=12.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+....
T Consensus 9 gsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 9 GSGKSTLAKRLAKRL 23 (143)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHC
Confidence 689999999998653
No 273
>PRK14974 cell division protein FtsY; Provisional
Probab=73.54 E-value=5.7 Score=38.75 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 150 GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 150 GTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999888887654
No 274
>PRK03839 putative kinase; Provisional
Probab=72.77 E-value=1.9 Score=37.75 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.++++..-
T Consensus 10 GsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 10 GVGKTTVSKLLAEKLGY 26 (180)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 78999999999988643
No 275
>PRK13975 thymidylate kinase; Provisional
Probab=72.68 E-value=1.8 Score=38.43 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 12 GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 12 GSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 78999999999998763
No 276
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.67 E-value=13 Score=34.40 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=16.9
Q ss_pred HHHHHHc-CCCc-EEEEEecCCCCCcchhhh
Q 047511 64 EKLKNQM-SRKK-FLLVLDDVWNENYSDWDS 92 (471)
Q Consensus 64 ~~l~~~L-~~kr-~LiVLDDVw~~~~~~~~~ 92 (471)
+.+.+.. +++| +.+++||.-.-....++.
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~ 150 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEA 150 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHH
Confidence 3333333 5788 999999984333334443
No 277
>PRK06762 hypothetical protein; Provisional
Probab=71.93 E-value=2.1 Score=36.89 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++.+
T Consensus 12 GsGKST~A~~L~~~l 26 (166)
T PRK06762 12 GSGKTTIAKQLQERL 26 (166)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998776
No 278
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=71.91 E-value=2 Score=36.84 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|.++.+-+
T Consensus 9 GCGKTTva~aL~~LF 23 (168)
T PF08303_consen 9 GCGKTTVALALSNLF 23 (168)
T ss_pred CcCHHHHHHHHHHHc
Confidence 789999999998765
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.27 E-value=4.5 Score=40.93 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||++..++....
T Consensus 231 GvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 231 GVGKTTTLAKLAARYA 246 (424)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999998887655
No 280
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=71.18 E-value=2.1 Score=40.17 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
||||||+++++.+..
T Consensus 4 GvGKTT~~~~l~~~~ 18 (281)
T PF00693_consen 4 GVGKTTTLKALAEAL 18 (281)
T ss_dssp TSSHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHcc
Confidence 899999999998874
No 281
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=71.14 E-value=2.1 Score=36.15 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+....
T Consensus 9 GsGKST~a~~l~~~~ 23 (150)
T cd02021 9 GSGKSTVGKALAERL 23 (150)
T ss_pred CCCHHHHHHHHHhhc
Confidence 689999999998763
No 282
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=71.03 E-value=2 Score=37.03 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
+.|||||+++++..
T Consensus 9 stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 9 STGKTTLIEALAAR 22 (163)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 58999999999876
No 283
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=71.02 E-value=7 Score=37.11 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=41.4
Q ss_pred EEEEecCCCCCcchhhhccccccCCCCCcEEE-ee-----------------------CchhHHHHHhhhcCCCCCCCCc
Q 047511 76 LLVLDDVWNENYSDWDSLSLPFEAGAPGCQII-LT-----------------------KDDCLQVFTQHCLGMRDFSMQQ 131 (471)
Q Consensus 76 LiVLDDVw~~~~~~~~~l~~~~~~~~~gsrii-iT-----------------------~~ea~~Lf~~~af~~~~~~~~~ 131 (471)
.||||++-....+.|..+..-......-.|-| || +++...-+...|-.+.- +
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~ 207 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV----D 207 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC----C
Confidence 57899996666688988888776655555543 44 34444444444433321 1
Q ss_pred hHHHHHHHHHHHcCCC
Q 047511 132 SLKDISEKIVIRCNGL 147 (471)
Q Consensus 132 ~~~~~~~~iv~~c~Gl 147 (471)
-..+..+.|++.++|-
T Consensus 208 ~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 208 IDDDALKLIAKISDGD 223 (346)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 1235677788888883
No 284
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=71.00 E-value=3.3 Score=40.88 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=47.6
Q ss_pred CCccchHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEE
Q 047511 1 MIGETNLSVSIEMLVNKL----ASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFL 76 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~----~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 76 (471)
|.|||.|....|+.+... .-.+.|...+++++..-. .....+. .+.+.+.++.-|
T Consensus 72 G~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~-----------------~~~~~l~----~va~~l~~~~~l 130 (362)
T PF03969_consen 72 GRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR-----------------GQDDPLP----QVADELAKESRL 130 (362)
T ss_pred CCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh-----------------CCCccHH----HHHHHHHhcCCE
Confidence 789999999999985441 112234444433222110 0111122 344455566669
Q ss_pred EEEecCCCCCcchhhhccccccC-CCCCcEEEee
Q 047511 77 LVLDDVWNENYSDWDSLSLPFEA-GAPGCQIILT 109 (471)
Q Consensus 77 iVLDDVw~~~~~~~~~l~~~~~~-~~~gsriiiT 109 (471)
|.+|..--.|..+---+..-+.. +..|..+|.|
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaT 164 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEALFKRGVVLVAT 164 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHHHHHCCCEEEec
Confidence 99998644544443333322322 4678889988
No 285
>PTZ00301 uridine kinase; Provisional
Probab=70.97 E-value=2.5 Score=38.24 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||||+.+.+++...
T Consensus 13 gSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 13 GSGKSSLSTNIVSELMAH 30 (210)
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 679999999999887544
No 286
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=70.87 E-value=1.6 Score=40.99 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL 28 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l 28 (471)
|+||||+|..++.++...-..++.+.++
T Consensus 29 g~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 29 GVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp TSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred cCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 6899999999999876643333444333
No 287
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=70.77 E-value=3.2 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|.+++..+..
T Consensus 33 GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 33 GSGKTNICLQLAVEAAK 49 (225)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999887644
No 288
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=5.6 Score=36.84 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=15.8
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||-+|++|+|+....|
T Consensus 221 gtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 221 GTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCchhHHHHHHhcccCceE
Confidence 6799999999999865544
No 289
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=70.53 E-value=2.5 Score=38.59 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+.+...+..
T Consensus 9 GSGKTTla~~L~~~l~~ 25 (220)
T cd02025 9 AVGKSTTARVLQALLSR 25 (220)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 68999999999988764
No 290
>PRK06696 uridine kinase; Validated
Probab=70.45 E-value=2.7 Score=38.40 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+.++..+..
T Consensus 32 gsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 32 ASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999988754
No 291
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.43 E-value=0.096 Score=47.18 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDA 356 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~ 356 (471)
-..|+.++.|..|+++.|.+..+|..++.+..+..+++.. ++.+..|.++++++.+++++..+|..
T Consensus 58 ~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 58 GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCcc
Confidence 3456667788889999999999999998888888888766 68888999999999999999988853
No 292
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.40 E-value=2.9 Score=39.24 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=23.6
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQ 31 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~ 31 (471)
|.|||-||++|+|+.+..|-.-.+-.-+|+.
T Consensus 229 GTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 229 GTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred CCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 6799999999999988887665555555543
No 293
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=70.22 E-value=2.1 Score=46.71 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++++..
T Consensus 213 G~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 213 GVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999998754
No 294
>PRK04296 thymidine kinase; Provisional
Probab=70.01 E-value=1.6 Score=38.73 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 59 LGLLQEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 59 ~~~~~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
..++...+++ ..++.-+||+|.+---+.++...+...+ ...|..||+|
T Consensus 65 ~~~~~~~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~t 112 (190)
T PRK04296 65 DTDIFELIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICY 112 (190)
T ss_pred hHHHHHHHHh-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEE
Confidence 4444455555 3345568999999221123333333332 3467889998
No 295
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=69.85 E-value=2.9 Score=36.90 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 9 G~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 9 GVGKTTIAANLAQALAR 25 (195)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhcccc
Confidence 79999999999998776
No 296
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=69.85 E-value=3 Score=35.01 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
+.|||||++.+.+.+.++
T Consensus 10 ~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 10 NSGKTTLIRKLINELKRR 27 (140)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhHc
Confidence 579999999999887653
No 297
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=69.67 E-value=2.9 Score=36.82 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||+++.+++.+....
T Consensus 6 GsGKtT~~~~L~~~l~~~~ 24 (186)
T PF02223_consen 6 GSGKTTQIRLLAEALKEKG 24 (186)
T ss_dssp TSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 7899999999999877654
No 298
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=69.54 E-value=28 Score=33.24 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
++|||++++......
T Consensus 71 nnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 71 NNGKTMIIERFRRLH 85 (302)
T ss_pred CCcHHHHHHHHHHHC
Confidence 589999998887763
No 299
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=69.32 E-value=3 Score=36.93 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 10 GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 10 GAGKTTLIELLAERLEA 26 (200)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999988753
No 300
>PRK06217 hypothetical protein; Validated
Probab=69.32 E-value=2.5 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+++....
T Consensus 11 GsGKSTla~~L~~~l 25 (183)
T PRK06217 11 GSGTTTLGAALAERL 25 (183)
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999999775
No 301
>PRK08760 replicative DNA helicase; Provisional
Probab=69.20 E-value=7.1 Score=40.17 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++.....
T Consensus 239 g~GKTafal~iA~~~a~ 255 (476)
T PRK08760 239 AMGKTTFALNIAEYAAI 255 (476)
T ss_pred CCChhHHHHHHHHHHHH
Confidence 68999999999987643
No 302
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=68.93 E-value=2.7 Score=37.91 Aligned_cols=16 Identities=19% Similarity=0.136 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||++++..+.
T Consensus 16 GsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 16 GSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 6899999999998754
No 303
>PRK00625 shikimate kinase; Provisional
Probab=68.80 E-value=2.7 Score=36.70 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++++.
T Consensus 10 GsGKTT~~k~La~~l~ 25 (173)
T PRK00625 10 TVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999998854
No 304
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=68.76 E-value=1.9 Score=39.11 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+|+..+.+...
T Consensus 25 g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 25 GVGKTVLLQEIANNQD 40 (215)
T ss_dssp TSSHHHHHHHHHHHCT
T ss_pred ccccchhhHHHHhccc
Confidence 6899999999998864
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=68.71 E-value=4.5 Score=34.07 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+||||||.+++..
T Consensus 17 G~GKstl~~~lae~ 30 (176)
T KOG3347|consen 17 GTGKSTLAERLAEK 30 (176)
T ss_pred CCCchhHHHHHHHH
Confidence 78999999999854
No 306
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.68 E-value=2.7 Score=45.86 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+++++...
T Consensus 222 GtGKT~laraia~~~~ 237 (733)
T TIGR01243 222 GTGKTLLAKAVANEAG 237 (733)
T ss_pred CCChHHHHHHHHHHhC
Confidence 7899999999998764
No 307
>PRK00131 aroK shikimate kinase; Reviewed
Probab=68.49 E-value=2.8 Score=36.24 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|++++..+.
T Consensus 14 GsGKstla~~La~~l~ 29 (175)
T PRK00131 14 GAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998863
No 308
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=68.49 E-value=2.7 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+...+.
T Consensus 35 GAGKTtf~rgi~~~Lg 50 (149)
T COG0802 35 GAGKTTLVRGIAKGLG 50 (149)
T ss_pred cCChHHHHHHHHHHcC
Confidence 6899999999987743
No 309
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=68.45 E-value=35 Score=36.34 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||..+..|-+.+..
T Consensus 432 GtGKT~tV~~Vm~~Lq~ 448 (767)
T KOG1514|consen 432 GTGKTATVLEVMKELQT 448 (767)
T ss_pred CCCceehHHHHHHHHHH
Confidence 78999999999987653
No 310
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.45 E-value=3.8 Score=23.28 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=9.9
Q ss_pred CcceEEEecCCCCCcC
Q 047511 297 KHLRHLDLSETDIQIL 312 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~l 312 (471)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566667777666543
No 311
>PHA02518 ParA-like protein; Provisional
Probab=68.40 E-value=3 Score=37.41 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 11 GvGKTT~a~~la~~la~ 27 (211)
T PHA02518 11 GAGKTTVATNLASWLHA 27 (211)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999887664
No 312
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=68.30 E-value=6.2 Score=43.88 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++.++..
T Consensus 204 GvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 204 GVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 79999999999988654
No 313
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=68.05 E-value=2.8 Score=37.16 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.++..+
T Consensus 9 gsGKTtla~~l~~~~ 23 (187)
T cd02024 9 NSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999999875
No 314
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.95 E-value=14 Score=35.98 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=16.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|-|||-||++|+++....|
T Consensus 195 GTGKTLLAkAVA~~T~AtF 213 (406)
T COG1222 195 GTGKTLLAKAVANQTDATF 213 (406)
T ss_pred CCcHHHHHHHHHhccCceE
Confidence 6799999999999976666
No 315
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.84 E-value=3.5 Score=40.66 Aligned_cols=158 Identities=18% Similarity=0.100 Sum_probs=84.5
Q ss_pred CCCcceEEEecCCC-CCc--CCccccCCCCCcEEEccCCCcccccchh-h-hccccCCeeecCCCCCCccC--cccccCC
Q 047511 295 DLKHLRHLDLSETD-IQI--LPESVNTLYNLRTLMLQKCNQLAKMCSD-M-GNLLKLHHLDNSDVDASEEI--PKGMGKL 367 (471)
Q Consensus 295 ~l~~L~~L~l~~~~-l~~--lp~~i~~l~~L~~L~l~~~~~~~~lP~~-~-~~l~~L~~L~l~~~~~~~~l--P~~~~~l 367 (471)
.+..|++|+.+++. ++. +-.-..+..+|++|-+++|+.++..--. + .+.+.|+.+++.++..+..- -.--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777777763 331 1122345678888888888765443211 1 25677888888887433221 1112367
Q ss_pred CCCcccCCeeecCcccc---cccccc--cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcch
Q 047511 368 ACLLTLCSFVVGKDIGS---ALQELK--LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEI 442 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~---~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 442 (471)
+.|+.|.+..+..-... .+.+-. +..|. .+.+. +.+...+..-..+..+++|+.+++-.+.+ -.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~-~lEL~---n~p~i~d~~Le~l~~c~~Leri~l~~~q~-------vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE-VLELD---NCPLITDATLEHLSICRNLERIELIDCQD-------VT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccc-eeeec---CCCCchHHHHHHHhhCcccceeeeechhh-------hh
Confidence 78888876543321111 111111 33333 34444 34445566666788899999998865541 11
Q ss_pred HHHhhccCCCCCCcceEEEEe
Q 047511 443 ETHVLDMLKPHQNLERFCISG 463 (471)
Q Consensus 443 ~~~~~~~l~~~~~L~~L~L~~ 463 (471)
...+-..-+.+|+++...+.+
T Consensus 441 k~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhHHHHhhCccceehhhcc
Confidence 122222234466776665543
No 316
>CHL00095 clpC Clp protease ATP binding subunit
Probab=67.64 E-value=2.9 Score=46.23 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 210 GvGKTal~~~la~~i~~ 226 (821)
T CHL00095 210 GVGKTAIAEGLAQRIVN 226 (821)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999988653
No 317
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=67.61 E-value=3.6 Score=44.91 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||+||+++++...
T Consensus 497 GtGKT~lakalA~e~~ 512 (733)
T TIGR01243 497 GTGKTLLAKAVATESG 512 (733)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 7899999999998754
No 318
>PRK08006 replicative DNA helicase; Provisional
Probab=67.54 E-value=5.7 Score=40.76 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH---HHHHhhhHH
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL---QEQIQSDLK 37 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l---q~~~l~~l~ 37 (471)
|+||||+|..++..+......+..+.++ .+++...++
T Consensus 234 gmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 234 SMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHH
Confidence 6899999999988765332223333333 344444444
No 319
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=67.47 E-value=2.8 Score=35.94 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+.+..
T Consensus 8 GsGKSTla~~l~~~l 22 (163)
T TIGR01313 8 GSGKSTIASALAHRL 22 (163)
T ss_pred CCCHHHHHHHHHHhc
Confidence 689999999999875
No 320
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=67.18 E-value=3.7 Score=32.13 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 10 G~Gkst~~~~la~~~~~ 26 (104)
T cd02042 10 GVGKTTTAVNLAAALAR 26 (104)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 79999999988876654
No 321
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=67.15 E-value=2.9 Score=36.46 Aligned_cols=16 Identities=6% Similarity=0.364 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++.+...
T Consensus 12 gsGKst~a~~l~~~~~ 27 (175)
T cd00227 12 SAGKSSIARALQSVLA 27 (175)
T ss_pred CCCHHHHHHHHHHhhC
Confidence 6899999999987754
No 322
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=66.78 E-value=4.6 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHHHcC-CCcEEEEEecC
Q 047511 57 DELGLLQEKLKNQMS-RKKFLLVLDDV 82 (471)
Q Consensus 57 ~~~~~~~~~l~~~L~-~kr~LiVLDDV 82 (471)
.+.++....+....+ +.--+||+|.|
T Consensus 116 ~~~eq~l~~~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 116 DTGEQALEIAETLVRSGAVDIIVVDSV 142 (321)
T ss_pred CCHHHHHHHHHHHhhccCCcEEEEcch
Confidence 445666666665553 45678999998
No 323
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=66.66 E-value=3.5 Score=35.82 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+.++
T Consensus 10 G~GKtt~a~~la~~l~~~ 27 (179)
T cd02036 10 GVGKTTTTANLGTALAQL 27 (179)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 799999999999877653
No 324
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=66.60 E-value=13 Score=31.33 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++.+.
T Consensus 6 gsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 6 GSGKGTQAKRLAKRY 20 (151)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhc
Confidence 789999999999874
No 325
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.54 E-value=11 Score=40.21 Aligned_cols=18 Identities=6% Similarity=-0.073 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+++.++..+...
T Consensus 120 GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 120 GCGKSTTIKILSKELGIQ 137 (637)
T ss_pred CCCHHHHHHHHHHHhhhH
Confidence 789999999999876543
No 326
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=66.42 E-value=3.1 Score=36.78 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=12.0
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|-||||+.+.+.-.
T Consensus 9 ~~GKst~l~~i~~~ 22 (185)
T smart00534 9 MGGKSTYLRQVGLI 22 (185)
T ss_pred CCcHHHHHHHHHHH
Confidence 67999999999843
No 327
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=66.25 E-value=3.5 Score=36.21 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+.+...+..
T Consensus 9 gsGKttla~~l~~~l~~ 25 (179)
T cd02028 9 GSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987753
No 328
>PRK06547 hypothetical protein; Provisional
Probab=66.16 E-value=3.2 Score=36.23 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 25 GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 25 GSGKTTLAGALAART 39 (172)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998763
No 329
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=66.10 E-value=3.7 Score=39.55 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|.+.+-...+
T Consensus 11 GVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 11 GVGKTTVAAALALALAR 27 (305)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhh
Confidence 89999999998876554
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=66.03 E-value=3.4 Score=40.94 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||||+.+++.....
T Consensus 92 G~GKStLllq~a~~~a~ 108 (372)
T cd01121 92 GIGKSTLLLQVAARLAK 108 (372)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999877654
No 331
>CHL00195 ycf46 Ycf46; Provisional
Probab=65.96 E-value=3.3 Score=42.58 Aligned_cols=16 Identities=13% Similarity=-0.053 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||.+|+++++...
T Consensus 269 GTGKTllAkaiA~e~~ 284 (489)
T CHL00195 269 GTGKSLTAKAIANDWQ 284 (489)
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7899999999998753
No 332
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=65.79 E-value=2.1 Score=43.61 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCcEEEEEecC
Q 047511 63 QEKLKNQMSRKKFLLVLDDV 82 (471)
Q Consensus 63 ~~~l~~~L~~kr~LiVLDDV 82 (471)
++.++. +++.+|+|+||+
T Consensus 225 AEyfr~--~G~~VLlv~Ddl 242 (485)
T CHL00059 225 AEYFMY--RGRHTLIIYDDL 242 (485)
T ss_pred HHHHHH--cCCCEEEEEcCh
Confidence 344443 689999999999
No 333
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=65.70 E-value=3.9 Score=36.26 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 13 GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 13 GAGKTTQANLLKKLLQE 29 (195)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987754
No 334
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=65.30 E-value=3.4 Score=36.81 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.+...+
T Consensus 9 GsGKSTl~~~l~~~l 23 (198)
T cd02023 9 GSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998765
No 335
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=65.27 E-value=3.9 Score=34.96 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||+.++...++.+
T Consensus 9 gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 9 NSGKTTLIERLVKALKAR 26 (155)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 689999999999887654
No 336
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.20 E-value=5.3 Score=36.67 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=17.1
Q ss_pred CCccchHHHHHHHHHHHhhhh
Q 047511 1 MIGETNLSVSIEMLVNKLASE 21 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~ 21 (471)
|.|||.||++|+|.....|=.
T Consensus 199 g~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 199 GTGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCcHHHHHHHHhhccchheee
Confidence 679999999999986665533
No 337
>PRK05973 replicative DNA helicase; Provisional
Probab=65.11 E-value=4.6 Score=37.24 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|..+......
T Consensus 74 G~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 74 GHGKTLLGLELAVEAMK 90 (237)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 78999999988766543
No 338
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=64.97 E-value=3 Score=46.18 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..+++++..
T Consensus 218 GvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 218 GVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 79999999999998754
No 339
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=64.88 E-value=3.6 Score=38.43 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 13 GvGKTT~a~nLa~~La~~ 30 (259)
T COG1192 13 GVGKTTTAVNLAAALAKR 30 (259)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 899999999999887743
No 340
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=64.83 E-value=1.5 Score=44.65 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||||+..+...+.+
T Consensus 171 GvGKs~L~~~~~~~~~~ 187 (494)
T CHL00060 171 GVGKTVLIMELINNIAK 187 (494)
T ss_pred CCChhHHHHHHHHHHHH
Confidence 79999999988877543
No 341
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.63 E-value=2.4 Score=37.65 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=44.8
Q ss_pred cceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccc-hhhh-ccccCCeeecCCCCCCccCcc-cccCCCCCccc
Q 047511 298 HLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMC-SDMG-NLLKLHHLDNSDVDASEEIPK-GMGKLACLLTL 373 (471)
Q Consensus 298 ~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP-~~~~-~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L 373 (471)
.++.++.+++.|... -+.+.+++.++.|.+.+|..+..-- +-++ -.++|+.|++++|..+.+--- .+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777766632 3456677777777777776543211 0111 235777888887765543211 24556666665
Q ss_pred CCe
Q 047511 374 CSF 376 (471)
Q Consensus 374 ~~~ 376 (471)
.++
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 342
>PRK13947 shikimate kinase; Provisional
Probab=64.63 E-value=2.7 Score=36.38 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+.-
T Consensus 11 GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 11 GTGKTTVGKRVATTLSF 27 (171)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 68999999999988644
No 343
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=64.50 E-value=4.6 Score=34.96 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 10 G~GKTt~a~~LA~~la~ 26 (169)
T cd02037 10 GVGKSTVAVNLALALAK 26 (169)
T ss_pred cCChhHHHHHHHHHHHH
Confidence 79999999999987665
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.50 E-value=4 Score=40.37 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++.....
T Consensus 147 GvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 147 GVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987543
No 345
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=64.48 E-value=3.8 Score=34.20 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 9 GsGKst~a~~la~~~ 23 (147)
T cd02020 9 GSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999999875
No 346
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=64.46 E-value=3.8 Score=35.96 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 13 GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 13 GSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998764
No 347
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=64.46 E-value=3.5 Score=35.99 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+++....
T Consensus 11 GsGKttl~~~l~~~~ 25 (179)
T TIGR02322 11 GAGKDTLLDYARARL 25 (179)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999988764
No 348
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=64.45 E-value=3.6 Score=35.47 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 5 GsGKSTla~~la~~l~ 20 (163)
T PRK11545 5 GSGKSAVASEVAHQLH 20 (163)
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7899999999998763
No 349
>PRK00889 adenylylsulfate kinase; Provisional
Probab=64.29 E-value=4.3 Score=35.35 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|++++..+..
T Consensus 14 GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 14 GAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999987753
No 350
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=64.28 E-value=3.7 Score=37.34 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+.+.+.
T Consensus 9 GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 9 ASGKGKLAKELAEKLG 24 (219)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999987753
No 351
>PRK07667 uridine kinase; Provisional
Probab=64.18 E-value=4.2 Score=36.17 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|..+...+..
T Consensus 27 gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 27 RSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999988764
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.16 E-value=5.9 Score=42.87 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=23.4
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCC--CCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGA--PGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~--~gsriiiT 109 (471)
..-..++|||-. .+..+...+...|.... +=..+|+|
T Consensus 293 ~p~e~~LVLsAt--~~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 293 RPVRRLLLLNAA--SHGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CCCeEEEEECCC--CcHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 345678888877 44466666666664321 34578888
No 353
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=64.16 E-value=3.2 Score=37.16 Aligned_cols=44 Identities=9% Similarity=0.195 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 61 LLQEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 61 ~~~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
...+.++..|+...=.|++|.+ .+.+.+...... ...|..++.|
T Consensus 62 ~~~~~i~~aLr~~pd~ii~gEi--rd~e~~~~~l~~---a~~G~~v~~t 105 (198)
T cd01131 62 SFENALKAALRQDPDVILVGEM--RDLETIRLALTA---AETGHLVMST 105 (198)
T ss_pred CHHHHHHHHhcCCcCEEEEcCC--CCHHHHHHHHHH---HHcCCEEEEE
Confidence 3455677778777779999999 444555443333 2345567777
No 354
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=63.97 E-value=4.8 Score=41.10 Aligned_cols=17 Identities=24% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||||+.+++.....
T Consensus 104 GsGKTTL~lq~a~~~a~ 120 (454)
T TIGR00416 104 GIGKSTLLLQVACQLAK 120 (454)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999876644
No 355
>PRK10865 protein disaggregation chaperone; Provisional
Probab=63.68 E-value=3 Score=46.29 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||..++.++..
T Consensus 209 GvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 209 GVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 79999999999988643
No 356
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=63.58 E-value=1.7 Score=43.65 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=12.1
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.+...
T Consensus 172 G~GKSTLL~~I~~~ 185 (444)
T PRK08972 172 GVGKSVLLGMMTRG 185 (444)
T ss_pred CCChhHHHHHhccC
Confidence 78999999988864
No 357
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=63.40 E-value=5.4 Score=35.81 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||++|.+++.....
T Consensus 22 GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 22 GSGKTNICMILAVNAAR 38 (209)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999998877644
No 358
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=63.03 E-value=2.6 Score=42.65 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+|+..+.+...
T Consensus 148 G~GKt~l~~~~~~~~~ 163 (449)
T TIGR03305 148 GVGKTVLLTEMIHNMV 163 (449)
T ss_pred CCChhHHHHHHHHHHH
Confidence 7899999999988765
No 359
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=63.00 E-value=4.4 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||.||+++++.+.
T Consensus 13 GvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 13 GVGKTELAKALAELLF 28 (171)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7999999999998876
No 360
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=62.96 E-value=28 Score=34.05 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++=.+|+|++-......+..+...+..-.++..+|.+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 168 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLV 168 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEE
Confidence 44557788999665556677777766554556655555
No 361
>PRK09165 replicative DNA helicase; Provisional
Probab=62.55 E-value=13 Score=38.42 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 227 g~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 227 SMGKTALATNIAFNAAKA 244 (497)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 689999999988877544
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=62.46 E-value=11 Score=34.52 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 16 GsGK~T~a~~La~~~ 30 (229)
T PTZ00088 16 GVGKGTFAEILSKKE 30 (229)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998874
No 363
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=62.25 E-value=16 Score=36.18 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=48.0
Q ss_pred CCccchHHHHHHHHH-----HHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcE
Q 047511 1 MIGETNLSVSIEMLV-----NKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKF 75 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~-----~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 75 (471)
|.|||+|.-..|+.. +..+-.+.|...+.+++..--.. .-...-. ...+ ...+-+.-+++.| ..--.
T Consensus 124 GcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~--~~~~~~~-~a~~-~~~Dpl~~vA~eI----a~ea~ 195 (467)
T KOG2383|consen 124 GCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQE--QGAEKPG-YAKS-WEIDPLPVVADEI----AEEAI 195 (467)
T ss_pred CcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHh--ccccCcc-cccc-ccCCccHHHHHHH----hhhce
Confidence 789999999999652 22233345555554433221110 0000000 0000 1112333334444 34589
Q ss_pred EEEEecCCCCCcch---hhhccccccCCCCCcEEEee
Q 047511 76 LLVLDDVWNENYSD---WDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 76 LiVLDDVw~~~~~~---~~~l~~~~~~~~~gsriiiT 109 (471)
|+.+|..--.|..+ +..+...+ +..|-.++.|
T Consensus 196 lLCFDEfQVTDVADAmiL~rLf~~L--f~~GvVlvAT 230 (467)
T KOG2383|consen 196 LLCFDEFQVTDVADAMILKRLFEHL--FKNGVVLVAT 230 (467)
T ss_pred eeeechhhhhhHHHHHHHHHHHHHH--HhCCeEEEEe
Confidence 99999864343332 23333333 4568888888
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.21 E-value=15 Score=36.87 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|..++...
T Consensus 233 GvGKTTtaaKLA~~~ 247 (432)
T PRK12724 233 GSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999998754
No 365
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=61.96 E-value=6.5 Score=38.07 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=18.0
Q ss_pred CCcHHHHHHHHHHHcC-CCcEEEEEecC
Q 047511 56 TDELGLLQEKLKNQMS-RKKFLLVLDDV 82 (471)
Q Consensus 56 ~~~~~~~~~~l~~~L~-~kr~LiVLDDV 82 (471)
+.+.+++...+....+ +.--+||+|.|
T Consensus 115 p~~~eq~l~i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 115 PDTGEQALEIADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEcch
Confidence 3455666666665553 45678999998
No 366
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=61.90 E-value=4.6 Score=34.20 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+.+...+.
T Consensus 9 GsGKSTla~~L~~~l~ 24 (149)
T cd02027 9 GSGKSTIARALEEKLF 24 (149)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999998764
No 367
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=61.80 E-value=3.2 Score=38.99 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||+++++..
T Consensus 31 GtGKT~lA~~la~~l 45 (262)
T TIGR02640 31 GTGKTTLAMHVARKR 45 (262)
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999999999764
No 368
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=61.67 E-value=3 Score=42.59 Aligned_cols=137 Identities=19% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCCCCcEEEccCCCcccc--cchhhhccccCCeeecCCC-CCCccCc----ccccCCCCCcccCCeeecCcccccccccc
Q 047511 318 TLYNLRTLMLQKCNQLAK--MCSDMGNLLKLHHLDNSDV-DASEEIP----KGMGKLACLLTLCSFVVGKDIGSALQELK 390 (471)
Q Consensus 318 ~l~~L~~L~l~~~~~~~~--lP~~~~~l~~L~~L~l~~~-~~~~~lP----~~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 390 (471)
..++|+.|.+.+|..+.. +-......++|+.|+++++ ......| .....+++|+.|++.....-....+..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478899999999888876 4456778899999999873 2222222 12335678888877654421122233332
Q ss_pred --cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEee
Q 047511 391 --LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGY 464 (471)
Q Consensus 391 --l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 464 (471)
..+|+ .|.+.....+ ....+..-...+++|++|++++|... ....+.....++++|+.|.+.+.
T Consensus 266 ~~c~~L~-~L~l~~c~~l--t~~gl~~i~~~~~~L~~L~l~~c~~~-------~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLE-TLSLSNCSNL--TDEGLVSIAERCPSLRELDLSGCHGL-------TDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcc-eEccCCCCcc--chhHHHHHHHhcCcccEEeeecCccc-------hHHHHHHHHHhCcchhhhhhhhc
Confidence 34555 5554333321 12233344566788999999988621 12222223344667777665543
No 369
>PRK13695 putative NTPase; Provisional
Probab=61.66 E-value=5.1 Score=34.87 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.+++.+..
T Consensus 10 G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 10 GVGKTTLVLKIAELLKE 26 (174)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999988654
No 370
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=61.64 E-value=2.5 Score=39.92 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+.+
T Consensus 12 GVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 12 GIGKSTTTQNTAAAMAY 28 (275)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 89999999988887764
No 371
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=61.60 E-value=4.6 Score=37.90 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 11 GvGKTT~~~nLA~~La~ 27 (270)
T cd02040 11 GIGKSTTTQNLSAALAE 27 (270)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 89999999999988764
No 372
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=61.57 E-value=4.7 Score=34.03 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 9 GsGKstla~~la~~l~ 24 (154)
T cd00464 9 GAGKTTVGRLLAKALG 24 (154)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998753
No 373
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=61.52 E-value=5.1 Score=36.97 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++.+++..+..
T Consensus 12 GvG~TTltAnLA~aL~~ 28 (243)
T PF06564_consen 12 GVGKTTLTANLAWALAR 28 (243)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999988554
No 374
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=61.48 E-value=2.5 Score=42.97 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||||+..+.+...
T Consensus 151 G~GKs~L~~~ia~~~~ 166 (458)
T TIGR01041 151 GLPHNELAAQIARQAT 166 (458)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 7899999999888653
No 375
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.26 E-value=4.9 Score=21.99 Aligned_cols=10 Identities=50% Similarity=0.497 Sum_probs=3.8
Q ss_pred CCcEEEccCC
Q 047511 321 NLRTLMLQKC 330 (471)
Q Consensus 321 ~L~~L~l~~~ 330 (471)
+|+.|++++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4445555543
No 376
>PRK13976 thymidylate kinase; Provisional
Probab=61.25 E-value=5.4 Score=36.05 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+|+.+++.++..
T Consensus 10 GsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 10 GSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 789999999999887654
No 377
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=61.23 E-value=4.4 Score=32.38 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=11.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||.+.+...
T Consensus 9 g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 9 GVGKTSLIRRLCGG 22 (119)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcC
Confidence 78999998877653
No 378
>PHA02542 41 41 helicase; Provisional
Probab=61.16 E-value=12 Score=38.46 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|..++....
T Consensus 200 gmGKTtfalniA~~~a 215 (473)
T PHA02542 200 NVGKSLGLCSLAADYL 215 (473)
T ss_pred CccHHHHHHHHHHHHH
Confidence 6899999999998765
No 379
>PRK07933 thymidylate kinase; Validated
Probab=60.54 E-value=5.3 Score=36.20 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+++.+++.+...
T Consensus 10 GsGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 10 GAGKRTLTEALRAALEAR 27 (213)
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 789999999999988653
No 380
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=60.28 E-value=5.6 Score=35.88 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||.++.++..++.+.
T Consensus 13 GaGKTT~~~~L~~~l~~~g 31 (208)
T COG0125 13 GAGKTTQAELLKERLEERG 31 (208)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 7899999999999887753
No 381
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=60.18 E-value=5 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+.+
T Consensus 10 GVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 10 GIGKSTTSSNLSVAFAK 26 (268)
T ss_pred cCcHHHHHHHHHHHHHh
Confidence 79999999988877654
No 382
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=60.09 E-value=9 Score=38.56 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHH---HHHHhhhHHHHHHHHHHHhhccCCCC-CCCcHHHHHHHHHHHcCCCcEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSL---QEQIQSDLKKWKKILVFIATADQPVN-GTDELGLLQEKLKNQMSRKKFL 76 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~l---q~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~kr~L 76 (471)
++||||+|..++..+......+..+.++ .+++...++.... .+....-... -..+.-+....-...++...
T Consensus 206 ~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s---~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~-- 280 (435)
T COG0305 206 GMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSES---GIESSKLRTGRLSDDEWERLIKAASELSEAP-- 280 (435)
T ss_pred CCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHhhcccc---ccchhccccccccHHHHHHHHHHHHHHhhCC--
Confidence 6899999999999988766655444444 3444444443111 1111000011 11122222333445566677
Q ss_pred EEEecCCCCCcchh
Q 047511 77 LVLDDVWNENYSDW 90 (471)
Q Consensus 77 iVLDDVw~~~~~~~ 90 (471)
|.+||.+.-...+.
T Consensus 281 i~IdD~~~~si~ei 294 (435)
T COG0305 281 IFIDDTPGLTITEI 294 (435)
T ss_pred eeecCCCcCCHHHH
Confidence 88899966544343
No 383
>PRK04040 adenylate kinase; Provisional
Probab=59.97 E-value=5.1 Score=35.51 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+++.+...+.
T Consensus 12 G~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 12 GVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7899999999988873
No 384
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=59.83 E-value=4.7 Score=36.45 Aligned_cols=64 Identities=17% Similarity=0.052 Sum_probs=37.4
Q ss_pred CCccchHHHHHHHHHHHhh----hhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCc
Q 047511 1 MIGETNLSVSIEMLVNKLA----SEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKK 74 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~----~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 74 (471)
|.||||+|+.++..+.... +...++. -+.+.-.+- -.......+...|.+-+.+.|...+.+++
T Consensus 18 gSGKTTva~~l~~~~~~~~~~~I~~D~YYk-~~~~~~~~~---------~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 18 GSGKTTVAKELSEQLGVEKVVVISLDDYYK-DQSHLPFEE---------RNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CCCHHHHHHHHHHHhCcCcceEeecccccc-chhhcCHhh---------cCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 5799999999998877431 1111111 121111100 01122344566778888888999999988
No 385
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=59.80 E-value=2.7 Score=42.96 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=11.4
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
+++.+|+|+||+
T Consensus 252 ~G~~VLlv~Ddl 263 (497)
T TIGR03324 252 QGRDVLIVYDDL 263 (497)
T ss_pred CCCCEEEEEcCh
Confidence 689999999999
No 386
>PRK00698 tmk thymidylate kinase; Validated
Probab=59.74 E-value=5.8 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+++.+..
T Consensus 13 gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 13 GAGKSTQIELLKELLEQ 29 (205)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987644
No 387
>PRK10037 cell division protein; Provisional
Probab=59.58 E-value=5.3 Score=37.15 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+..+
T Consensus 12 GvGKTT~a~nLA~~La~~ 29 (250)
T PRK10037 12 GVGTTSITAALAWSLQML 29 (250)
T ss_pred CccHHHHHHHHHHHHHhc
Confidence 799999999999876653
No 388
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=59.53 E-value=5 Score=35.10 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 9 GsGKst~a~~la~~~ 23 (183)
T TIGR01359 9 GSGKGTQCAKIVENF 23 (183)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998864
No 389
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=59.42 E-value=5.3 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||++.+...++..
T Consensus 43 GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 43 GAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 689999999999887654
No 390
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=59.39 E-value=6.5 Score=37.34 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||...+.+.+...
T Consensus 114 GsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 114 GSGKTTLLTETLMRLKDS 131 (290)
T ss_pred CCCHHHHHHHHHHHhccC
Confidence 689999999998886554
No 391
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=5 Score=41.55 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=34.2
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCCCcEEEEEe
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSRKKFLLVLD 80 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLD 80 (471)
|-|||+||++|++..+..|-. ..-..+++...+ .....+.......-+...+.|.+|
T Consensus 286 GtGKT~lAkava~~~~~~fi~-----v~~~~l~sk~vG------------------esek~ir~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 286 GTGKTLLAKAVALESRSRFIS-----VKGSELLSKWVG------------------ESEKNIRELFEKARKLAPSIIFID 342 (494)
T ss_pred CCCHHHHHHHHHhhCCCeEEE-----eeCHHHhccccc------------------hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 679999999999855444311 000122222221 222333344455556788999999
Q ss_pred cC
Q 047511 81 DV 82 (471)
Q Consensus 81 DV 82 (471)
.+
T Consensus 343 Ei 344 (494)
T COG0464 343 EI 344 (494)
T ss_pred ch
Confidence 99
No 392
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=59.20 E-value=35 Score=33.00 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||+|+|.++++.+-.
T Consensus 36 G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 36 GVGRKLAALCFIEGLLS 52 (314)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 79999999999988643
No 393
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=59.11 E-value=23 Score=32.53 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+|.++......+
T Consensus 23 G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 23 SMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 689999999987775544
No 394
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=59.08 E-value=5.5 Score=37.43 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 10 GvGKTT~a~nLA~~la~ 26 (267)
T cd02032 10 GIGKSTTSSNLSVALAK 26 (267)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999888765
No 395
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=58.98 E-value=5.6 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 12 GVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 12 GIGKSTTSSNLSAAFAK 28 (270)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999888654
No 396
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=58.92 E-value=6.3 Score=31.85 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..+++.+.+
T Consensus 9 G~GKTt~a~~la~~l~~ 25 (116)
T cd02034 9 GVGKTTIAALLARYLAE 25 (116)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999887755
No 397
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=58.86 E-value=30 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCC
Q 047511 59 LGLLQEKLKNQMSRKKFLLVLDDVW 83 (471)
Q Consensus 59 ~~~~~~~l~~~L~~kr~LiVLDDVw 83 (471)
-++.+-.+.+..-.++=|-|||.+.
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcc
Confidence 4555666777788999999999983
No 398
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=58.69 E-value=5.2 Score=35.43 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+++.+.+.
T Consensus 9 GsGKSTl~~~L~~~ 22 (193)
T cd01673 9 GAGKSTLAKELAEH 22 (193)
T ss_pred CCCHHHHHHHHHHH
Confidence 78999999999875
No 399
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=58.60 E-value=5.8 Score=38.86 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||.++.+.+..
T Consensus 88 GsGKStla~~La~~l~~ 104 (361)
T smart00763 88 GGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 78999999999998765
No 400
>PRK05748 replicative DNA helicase; Provisional
Probab=58.56 E-value=19 Score=36.70 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++.....
T Consensus 213 g~GKT~~al~ia~~~a~ 229 (448)
T PRK05748 213 SVGKTAFALNIAQNVAT 229 (448)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 68999999999877643
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.55 E-value=10 Score=39.31 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 360 GvGKTTtaakLAa~la~ 376 (559)
T PRK12727 360 GAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999998876544
No 402
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=58.50 E-value=6 Score=36.75 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|++++..+..
T Consensus 9 GSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 9 GVGKSTFSKELAKKLSE 25 (249)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987754
No 403
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=58.19 E-value=6.8 Score=39.60 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||||++.+++..
T Consensus 168 G~GKTtLL~~I~~~~ 182 (442)
T PRK08927 168 GVGKSVLLSMLARNA 182 (442)
T ss_pred CCCHHHHHHHHHhcc
Confidence 789999999998764
No 404
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=58.07 E-value=5.8 Score=37.59 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+..
T Consensus 11 GVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 11 GIGKSTTVCNIAAALAE 27 (279)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 89999999999988654
No 405
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=58.06 E-value=0.39 Score=49.14 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=25.3
Q ss_pred hhcCCc-ccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 415 AQLNGK-KNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 415 ~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
..+..+ ..++.++++.|+. .......+.+.+..++.+++|.+++|.+.
T Consensus 255 ~~l~~~~~~l~~l~l~~nsi-----~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 255 PCLSVLSETLRVLDLSRNSI-----TEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHhcccchhhhhhhhhcCCc-----cccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 334444 5566777766652 11222334444555556777777666543
No 406
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.04 E-value=6 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 11 GvGKTt~a~~LA~~la~ 27 (251)
T TIGR01969 11 GTGKTTITANLGVALAK 27 (251)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999987654
No 407
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=58.00 E-value=5.5 Score=34.69 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 14 GaGKStl~~~La~~l~ 29 (172)
T PRK05057 14 GAGKSTIGRQLAQQLN 29 (172)
T ss_pred CcCHHHHHHHHHHHcC
Confidence 6899999999998753
No 408
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=57.93 E-value=4.7 Score=33.90 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||++++-.
T Consensus 11 g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 11 GSGKTTLAQALNG 23 (143)
T ss_pred CCCHHHHHHHHcC
Confidence 6899999998865
No 409
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=57.62 E-value=4.3 Score=41.02 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||||+..+.++.+
T Consensus 151 GvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 151 GLPHNEIAAQICRQAG 166 (466)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 7999999999887754
No 410
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=57.61 E-value=6.1 Score=38.23 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
||||||+|.+.+-...+..
T Consensus 12 GVGKTT~aaA~A~~lA~~g 30 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG 30 (322)
T ss_pred cccHHHHHHHHHHHHHHcC
Confidence 8999999999776655543
No 411
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=57.44 E-value=9.5 Score=34.65 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=12.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||.+++...
T Consensus 29 GsGKT~l~~~ia~~~ 43 (226)
T cd01393 29 GSGKTQLCLQLAVEA 43 (226)
T ss_pred CCChhHHHHHHHHHh
Confidence 689999999987664
No 412
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=57.35 E-value=17 Score=39.36 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||++|+++++.-
T Consensus 409 GTGK~~lA~~ih~~s 423 (686)
T PRK15429 409 GTGKELIARAIHNLS 423 (686)
T ss_pred CcCHHHHHHHHHHhc
Confidence 789999999998753
No 413
>PRK13949 shikimate kinase; Provisional
Probab=57.27 E-value=5.9 Score=34.43 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 11 GsGKstl~~~La~~l~ 26 (169)
T PRK13949 11 GAGKTTLGKALARELG 26 (169)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 6899999999998754
No 414
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=12 Score=41.05 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||-||++++..+
T Consensus 601 gvGKt~lAkaLA~~~ 615 (898)
T KOG1051|consen 601 GVGKTELAKALAEYV 615 (898)
T ss_pred chhHHHHHHHHHHHH
Confidence 699999999999876
No 415
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.16 E-value=7.7 Score=21.73 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=7.6
Q ss_pred CCCcEEEccCCCcc
Q 047511 320 YNLRTLMLQKCNQL 333 (471)
Q Consensus 320 ~~L~~L~l~~~~~~ 333 (471)
++|+.|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45555666555544
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=57.14 E-value=6 Score=35.29 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+.+...+.
T Consensus 34 GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 34 GSGKSTVAGALEEALH 49 (198)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999998764
No 417
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=57.02 E-value=6.5 Score=37.11 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+.+
T Consensus 11 GVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 11 GIGKSTTTQNLTAALST 27 (273)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 89999999999887654
No 418
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=56.95 E-value=28 Score=33.66 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||+++|.++++.+-
T Consensus 35 G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 35 GLGVESLVELFSRALL 50 (319)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 7999999999998753
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=56.63 E-value=7.3 Score=39.71 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||||+.+++....
T Consensus 90 G~GKTtL~lq~a~~~a 105 (446)
T PRK11823 90 GIGKSTLLLQVAARLA 105 (446)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999988765
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=56.62 E-value=8.6 Score=36.26 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
...=++++|.+ ...+.+..+..... .|..||+|
T Consensus 193 ~~P~villDE~--~~~e~~~~l~~~~~---~G~~vI~t 225 (270)
T TIGR02858 193 MSPDVIVVDEI--GREEDVEALLEALH---AGVSIIAT 225 (270)
T ss_pred CCCCEEEEeCC--CcHHHHHHHHHHHh---CCCEEEEE
Confidence 46778999999 44466666665553 46667777
No 421
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=56.45 E-value=5.9 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+.++.+.
T Consensus 13 G~GKst~a~~l~~~~ 27 (197)
T PRK12339 13 GVGKTSISGYIARHR 27 (197)
T ss_pred CCCHHHHHHHHHHhc
Confidence 799999999999874
No 422
>PRK13973 thymidylate kinase; Provisional
Probab=56.20 E-value=6.9 Score=35.41 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 13 GsGKtTq~~~l~~~l~~ 29 (213)
T PRK13973 13 GAGKSTQIRLLAERLRA 29 (213)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999998755
No 423
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=55.98 E-value=26 Score=30.14 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||.|+.+++...-
T Consensus 10 GsG~TTva~~lAe~~gl 26 (179)
T COG1102 10 GSGKTTVARELAEHLGL 26 (179)
T ss_pred CCChhHHHHHHHHHhCC
Confidence 68999999999988543
No 424
>PRK13948 shikimate kinase; Provisional
Probab=55.94 E-value=4.2 Score=35.85 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+++.+..
T Consensus 20 GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 20 GTGKSRIGWELSRALML 36 (182)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 68999999999988543
No 425
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=55.87 E-value=6.6 Score=37.07 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+..
T Consensus 10 GVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 10 GIGKSTTTQNIAAALAE 26 (275)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 89999999999988665
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.80 E-value=10 Score=38.17 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..++.
T Consensus 110 GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 110 GSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999887654
No 427
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=55.80 E-value=6.4 Score=40.56 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=11.2
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
+++.+|+|+||+
T Consensus 251 ~G~~VLlv~Ddl 262 (501)
T TIGR00962 251 NGKHALIIYDDL 262 (501)
T ss_pred cCCCEEEEecch
Confidence 589999999999
No 428
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=55.74 E-value=6 Score=34.25 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=10.8
Q ss_pred CCccchHHHHHH
Q 047511 1 MIGETNLSVSIE 12 (471)
Q Consensus 1 ~iGKTtLA~~v~ 12 (471)
|+||||.|+.+.
T Consensus 10 GvGKTT~~~~L~ 21 (180)
T COG1936 10 GVGKTTVCKLLR 21 (180)
T ss_pred CCchHHHHHHHH
Confidence 799999998886
No 429
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=55.64 E-value=5.2 Score=34.92 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.++...
T Consensus 11 GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 11 GVGKSTLVKALLEED 25 (180)
T ss_pred CCCHHHHHHHHHccC
Confidence 789999999998753
No 430
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=55.58 E-value=6.7 Score=33.88 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 12 GsGKst~~~~la~~lg 27 (171)
T PRK03731 12 GCGKTTVGMALAQALG 27 (171)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998753
No 431
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=55.52 E-value=6.8 Score=36.03 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 12 GvGKTT~a~nLA~~la~~ 29 (231)
T PRK13849 12 GAGKTTALMGLCAALASD 29 (231)
T ss_pred CccHHHHHHHHHHHHHhC
Confidence 899999999998876643
No 432
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=55.46 E-value=6.3 Score=34.59 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||||+++++.+.
T Consensus 14 G~GKsTl~k~L~~~~ 28 (191)
T COG0194 14 GVGKSTLVKALLEDD 28 (191)
T ss_pred CCCHHHHHHHHHhhc
Confidence 799999999999886
No 433
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=55.36 E-value=6.8 Score=37.00 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+.+
T Consensus 11 GVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 11 GIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 89999999999887654
No 434
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.36 E-value=40 Score=34.02 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
-+.++|||=- .+..+...+...+...+ =..+|+|
T Consensus 301 ~~~~LVl~at--~~~~~~~~~~~~f~~~~-~~~~I~T 334 (420)
T PRK14721 301 VKHLLLLNAT--SSGDTLDEVISAYQGHG-IHGCIIT 334 (420)
T ss_pred ceEEEEEcCC--CCHHHHHHHHHHhcCCC-CCEEEEE
Confidence 4677888877 44466776666665433 3567788
No 435
>PRK08149 ATP synthase SpaL; Validated
Probab=55.34 E-value=2.6 Score=42.33 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=11.3
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
++|.+|+++||+
T Consensus 239 ~G~~Vll~~Dsl 250 (428)
T PRK08149 239 QGKRVVLFIDSM 250 (428)
T ss_pred cCCCEEEEccch
Confidence 589999999999
No 436
>PTZ00202 tuzin; Provisional
Probab=55.09 E-value=14 Score=37.29 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+.....
T Consensus 296 G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 296 GCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 7899999999986543
No 437
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=55.00 E-value=13 Score=37.53 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|..++..+.
T Consensus 204 g~GKT~~al~ia~~~a 219 (421)
T TIGR03600 204 SMGKTTLALNIAENVA 219 (421)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999997764
No 438
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=54.96 E-value=20 Score=30.85 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHc-----CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 57 DELGLLQEKLKNQM-----SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 57 ~~~~~~~~~l~~~L-----~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
...++.. .+.+.+ .+++=.+|+||+-......+..+...+-.-..++++|++
T Consensus 82 i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 82 IKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp BSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred hhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3455555 344443 334557889999555556667777766665677888777
No 439
>PRK09354 recA recombinase A; Provisional
Probab=54.79 E-value=10 Score=37.06 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHHHcC-CCcEEEEEecC
Q 047511 57 DELGLLQEKLKNQMS-RKKFLLVLDDV 82 (471)
Q Consensus 57 ~~~~~~~~~l~~~L~-~kr~LiVLDDV 82 (471)
.+.++....+....+ +.--+||+|-|
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence 445666666666554 45678999998
No 440
>PRK08840 replicative DNA helicase; Provisional
Probab=54.65 E-value=13 Score=38.09 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 227 g~GKTafalnia~~~a~ 243 (464)
T PRK08840 227 SMGKTTFAMNLCENAAM 243 (464)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 68999999888877643
No 441
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=54.64 E-value=7.3 Score=35.17 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+.+
T Consensus 10 GvGKTt~~~nLA~~la~ 26 (212)
T cd02117 10 GIGKSTTSQNLSAALAE 26 (212)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 79999999998877665
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=54.61 E-value=5.9 Score=34.95 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.++...
T Consensus 12 GsGKsTl~~~l~~~~ 26 (186)
T PRK10078 12 GSGKDSLLAALRQRE 26 (186)
T ss_pred CCCHHHHHHHHhccC
Confidence 789999999998764
No 443
>PRK06761 hypothetical protein; Provisional
Probab=54.60 E-value=6.6 Score=37.21 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 13 GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 13 GFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CCCHHHHHHHHHHhcCc
Confidence 68999999999988653
No 444
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=54.15 E-value=7.1 Score=35.97 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
||||||+|..++.++
T Consensus 99 GVGkStIA~ElA~rL 113 (299)
T COG2074 99 GVGKSTIAGELARRL 113 (299)
T ss_pred CCChhHHHHHHHHHc
Confidence 799999999999884
No 445
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=54.12 E-value=11 Score=34.27 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 61 LLQEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 61 ~~~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+...++.. -.=.+|.|.+ ...++-..+..++ +.|-++|.|
T Consensus 209 gmmmaIrsm---~PEViIvDEI--Gt~~d~~A~~ta~---~~GVkli~T 249 (308)
T COG3854 209 GMMMAIRSM---SPEVIIVDEI--GTEEDALAILTAL---HAGVKLITT 249 (308)
T ss_pred HHHHHHHhc---CCcEEEEecc--ccHHHHHHHHHHH---hcCcEEEEe
Confidence 333444443 3457899999 4335555555443 568888888
No 446
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=53.85 E-value=10 Score=38.31 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||||+.++....
T Consensus 167 G~GKStLl~~i~~~~ 181 (434)
T PRK08472 167 GVGKSTLMGMIVKGC 181 (434)
T ss_pred CCCHHHHHHHHhhcc
Confidence 789999999998653
No 447
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=53.68 E-value=7.2 Score=39.45 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+++++.+..
T Consensus 204 GtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 204 GVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 79999999999988643
No 448
>PRK04182 cytidylate kinase; Provisional
Probab=53.66 E-value=7 Score=33.91 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 10 GsGKstia~~la~~lg 25 (180)
T PRK04182 10 GSGKTTVARLLAEKLG 25 (180)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 6899999999998753
No 449
>PTZ00185 ATPase alpha subunit; Provisional
Probab=53.48 E-value=5.6 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.432 Sum_probs=13.7
Q ss_pred HHHHHHHcCCCcEEEEEecC
Q 047511 63 QEKLKNQMSRKKFLLVLDDV 82 (471)
Q Consensus 63 ~~~l~~~L~~kr~LiVLDDV 82 (471)
++.+++ +++.+|||+||+
T Consensus 281 AEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 281 GEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHH--cCCCEEEEEcCc
Confidence 344443 589999999999
No 450
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=53.41 E-value=6.4 Score=40.54 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=11.2
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
+++.+|+|+||+
T Consensus 252 ~G~~VLli~Ddl 263 (502)
T PRK09281 252 NGKDALIVYDDL 263 (502)
T ss_pred cCCCEEEEecCc
Confidence 489999999999
No 451
>PLN02924 thymidylate kinase
Probab=53.36 E-value=8.1 Score=35.22 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+|+.+++.+...
T Consensus 26 GsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 26 RSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 689999999999887653
No 452
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=53.33 E-value=7.9 Score=35.96 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 12 GvGKTt~a~~lA~~la~ 28 (261)
T TIGR01968 12 GVGKTTTTANLGTALAR 28 (261)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 79999999999987654
No 453
>PRK13946 shikimate kinase; Provisional
Probab=53.21 E-value=6.9 Score=34.45 Aligned_cols=17 Identities=6% Similarity=0.210 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++++.-
T Consensus 20 GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 20 GAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 68999999999998643
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=53.21 E-value=7.9 Score=33.75 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.+...+..
T Consensus 16 gsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 16 GTGKTTLLKKLIPALCA 32 (173)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 68999999999877654
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=53.19 E-value=6.6 Score=32.73 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+.....
T Consensus 9 GsGKstl~~~L~~~~~ 24 (137)
T cd00071 9 GVGKSTLLKRLLEEFD 24 (137)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 6899999999987643
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=53.01 E-value=3.2 Score=41.96 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=11.3
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
+++.+|+++||+
T Consensus 252 ~G~~Vll~~Dsl 263 (450)
T PRK06002 252 RGENVLLIVDSV 263 (450)
T ss_pred cCCCEEEeccch
Confidence 589999999999
No 457
>PRK14530 adenylate kinase; Provisional
Probab=52.95 E-value=7.6 Score=35.16 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 13 GsGKsT~~~~La~~~ 27 (215)
T PRK14530 13 GAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998775
No 458
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=52.86 E-value=5.7 Score=38.70 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||+||++++..+..
T Consensus 53 G~gKT~la~~lA~~l~~ 69 (329)
T COG0714 53 GVGKTLLARALARALGL 69 (329)
T ss_pred CccHHHHHHHHHHHhCC
Confidence 79999999999988763
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=52.57 E-value=5.4 Score=40.27 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=11.2
Q ss_pred CCCcEEEEEecC
Q 047511 71 SRKKFLLVLDDV 82 (471)
Q Consensus 71 ~~kr~LiVLDDV 82 (471)
+++.+|+++||+
T Consensus 243 ~g~~Vll~~Dsl 254 (434)
T PRK07196 243 KGHDVLLLVDSL 254 (434)
T ss_pred ccCCEEEeecch
Confidence 589999999999
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=52.29 E-value=7.4 Score=34.79 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.++...
T Consensus 15 GsGKstl~~~l~~~~ 29 (205)
T PRK00300 15 GAGKSTLVKALLERD 29 (205)
T ss_pred CCCHHHHHHHHHhhC
Confidence 689999999998864
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=52.14 E-value=9.4 Score=35.04 Aligned_cols=14 Identities=21% Similarity=0.059 Sum_probs=11.8
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||||.++...
T Consensus 35 GsGKt~l~~~~~~~ 48 (234)
T PRK06067 35 GTGKSVLSQQFVYG 48 (234)
T ss_pred CCChHHHHHHHHHH
Confidence 68999999998544
No 462
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=52.10 E-value=7.4 Score=37.21 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+..+.
T Consensus 12 GSGKSTla~~L~~~~ 26 (300)
T PHA02530 12 GSGKSTWAREFAAKN 26 (300)
T ss_pred CCCHHHHHHHHHHHC
Confidence 689999999998765
No 463
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=52.07 E-value=8.5 Score=36.39 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||||+..+...+..+.
T Consensus 11 gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 11 ATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 6899999999998877653
No 464
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=52.05 E-value=8.3 Score=35.53 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 12 GvGKTt~a~nla~~la~ 28 (246)
T TIGR03371 12 GVGKTTLTANLASALKL 28 (246)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 79999999999988764
No 465
>PHA03134 thymidine kinase; Provisional
Probab=52.04 E-value=7.2 Score=37.68 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
||||||+++.+...
T Consensus 23 GvGKTT~~~~l~~~ 36 (340)
T PHA03134 23 GIGKSTTGRVMASA 36 (340)
T ss_pred cCCHHHHHHHHHHh
Confidence 79999999877653
No 466
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=51.83 E-value=5.2 Score=36.49 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=12.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||+||.++...-
T Consensus 29 GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 29 GSGKTTLALQFLYNG 43 (226)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh
Confidence 789999999866543
No 467
>PRK14532 adenylate kinase; Provisional
Probab=51.78 E-value=8 Score=34.04 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 10 GsGKsT~a~~la~~~ 24 (188)
T PRK14532 10 AAGKGTQAKRLVEER 24 (188)
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999998764
No 468
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=51.69 E-value=7.1 Score=34.05 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|..++..+
T Consensus 10 G~GKSt~a~nLA~~l 24 (179)
T cd03110 10 GTGKTTVTAALAALL 24 (179)
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999998766
No 469
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=51.67 E-value=8.5 Score=36.67 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+...+..
T Consensus 72 GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 72 AVGKSTTARILQALLSR 88 (290)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 78999999988776653
No 470
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=51.44 E-value=10 Score=40.63 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++++...
T Consensus 195 G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 195 GTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 7899999999987654
No 471
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=51.37 E-value=8.4 Score=42.02 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+|||++|+.+++.+..
T Consensus 217 GvGKT~lae~la~~i~~ 233 (758)
T PRK11034 217 GVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999987543
No 472
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=51.37 E-value=8.2 Score=34.03 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 9 GsGKst~a~~La~~~ 23 (194)
T cd01428 9 GSGKGTQAERLAKKY 23 (194)
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999998763
No 473
>PRK12338 hypothetical protein; Provisional
Probab=51.34 E-value=8 Score=37.28 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|++++.+.
T Consensus 14 GsGKST~a~~la~~l 28 (319)
T PRK12338 14 GIGKSTIASELARTL 28 (319)
T ss_pred CCCHHHHHHHHHHHC
Confidence 789999999999884
No 474
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=51.33 E-value=8.4 Score=36.80 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|..+++++
T Consensus 102 gsGKStlA~~La~~l 116 (301)
T PRK04220 102 GVGTSTIAFELASRL 116 (301)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999999876
No 475
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=51.31 E-value=6.8 Score=36.70 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 12 GvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 12 GIGKSTTVSNMAAAYSN 28 (264)
T ss_pred CCcHHHHHHHHhcccCC
Confidence 89999999999987654
No 476
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=50.70 E-value=9.3 Score=36.50 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||+|..++..+.+
T Consensus 10 GVGKTTta~nLA~~La~ 26 (290)
T CHL00072 10 GIGKSTTSCNISIALAR 26 (290)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999888665
No 477
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=50.67 E-value=6.7 Score=32.53 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=12.1
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||++++.+.
T Consensus 6 gsGKstl~~~l~~~ 19 (163)
T cd00880 6 NAGKSSLLNALLGQ 19 (163)
T ss_pred CCCHHHHHHHHhCc
Confidence 68999999998764
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=50.67 E-value=9.3 Score=36.12 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+++++.++.
T Consensus 15 GsGKTTva~~l~~if~~ 31 (290)
T PRK15453 15 GAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 68999999999987653
No 479
>PRK05922 type III secretion system ATPase; Validated
Probab=50.66 E-value=3.7 Score=41.36 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||.+.+...
T Consensus 167 G~GKSTLL~~Ia~~ 180 (434)
T PRK05922 167 GSGKSSLLSTIAKG 180 (434)
T ss_pred CCChHHHHHHHhcc
Confidence 68999999988865
No 480
>CHL00175 minD septum-site determining protein; Validated
Probab=50.51 E-value=9.3 Score=36.19 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+.+
T Consensus 26 GvGKTt~a~nLA~~La~ 42 (281)
T CHL00175 26 GVGKTTTTANLGMSIAR 42 (281)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 79999999999887765
No 481
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.51 E-value=13 Score=37.01 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.3
Q ss_pred HHHHHHHHc--CCCcEEEEEecC
Q 047511 62 LQEKLKNQM--SRKKFLLVLDDV 82 (471)
Q Consensus 62 ~~~~l~~~L--~~kr~LiVLDDV 82 (471)
.+..|.+++ ++|++|+++|-|
T Consensus 240 ~At~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 240 TATTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred HHHHHHHHHHhCCCeEEEEeecH
Confidence 344566666 579999999999
No 482
>PHA03135 thymidine kinase; Provisional
Probab=50.51 E-value=7.9 Score=37.46 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=12.0
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
||||||+++++...
T Consensus 20 GvGKTT~~~~l~~~ 33 (343)
T PHA03135 20 GIGKTSMLNEMPDH 33 (343)
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999888764
No 483
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=50.43 E-value=10 Score=32.64 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||+..+...+..
T Consensus 11 gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 11 GSGKTTLLEKLIPALSA 27 (159)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999876543
No 484
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=50.41 E-value=9.8 Score=34.72 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||++..++..+..+
T Consensus 12 GaGKTT~~~~LAs~la~~ 29 (231)
T PF07015_consen 12 GAGKTTAAMALASELAAR 29 (231)
T ss_pred CCcHHHHHHHHHHHHHHC
Confidence 789999999999876543
No 485
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=50.35 E-value=8.6 Score=33.04 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+.+.+
T Consensus 10 GSGKstia~~la~~l 24 (171)
T TIGR02173 10 GSGKTTVAKILAEKL 24 (171)
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998764
No 486
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=50.20 E-value=16 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 76 LLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 76 LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+||+|.+---+...+..+..++ .+++|+|+.
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al---~~~~rlIlv 292 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKAL---PPNTKLILL 292 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhc---CCCCEEEEE
Confidence 7899998544445555555554 357899988
No 487
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=50.05 E-value=11 Score=29.81 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 10 g~gkt~~~~~la~~~~~~ 27 (106)
T cd03111 10 GVGATTLAANLAVALAKE 27 (106)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 799999999988766554
No 488
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.70 E-value=0.64 Score=47.64 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=84.3
Q ss_pred CcceEEEecCCCCCc-----CCccccCCCCCcEEEccCCCcccc----cchhhhcc-ccCCeeecCCCCCCc----cCcc
Q 047511 297 KHLRHLDLSETDIQI-----LPESVNTLYNLRTLMLQKCNQLAK----MCSDMGNL-LKLHHLDNSDVDASE----EIPK 362 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lP~~~~~l-~~L~~L~l~~~~~~~----~lP~ 362 (471)
..+..|.|.+|.+.. +-..+.....|+.|++++|+.-.. +-..+... ..|++|++..|.... .++.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 346667777776652 334556677777788877543311 00111122 345666666663221 2344
Q ss_pred cccCCCCCcccCCeeecCcc-c-----ccccc-cc-cccccCceEEcccCCCCChhhhHHhhcCCccc-ccceEEEecCC
Q 047511 363 GMGKLACLLTLCSFVVGKDI-G-----SALQE-LK-LLHLHGALEISKLENVRDVSEAREAQLNGKKN-LKTLLLQWTSN 433 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~~~~~-~-----~~~~~-l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~ 433 (471)
.+.....++.++++.+.... + ..++. +. ..+++ .|.+................+...++ +.+|++..|..
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le-~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLE-TLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHH-HHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 45566677777665554321 0 11111 11 12222 33333322111222334455666666 77889987762
Q ss_pred CCCCCCcchHHHhhccCCCC-CCcceEEEEeecCCC
Q 047511 434 NGDSREPEIETHVLDMLKPH-QNLERFCISGYGGTK 468 (471)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~ 468 (471)
.+.......+.+..+ ..++.++++.|.++.
T Consensus 246 -----~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 246 -----GDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred -----chHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 111233444555555 678999999988753
No 489
>PHA03133 thymidine kinase; Provisional
Probab=49.64 E-value=8.3 Score=37.52 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
||||||+++.+....
T Consensus 50 GvGKTTt~~~l~~a~ 64 (368)
T PHA03133 50 GLGKTTTAAALAAAL 64 (368)
T ss_pred cCCHHHHHHHHHHhh
Confidence 799999998777653
No 490
>PRK05439 pantothenate kinase; Provisional
Probab=49.61 E-value=9.9 Score=36.59 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+...+..
T Consensus 96 gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 96 AVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999887654
No 491
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=49.50 E-value=51 Score=32.06 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+.+=.+|+|++-.........+...+..-.+++.+|.+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEE
Confidence 34446888998433334455566555544456666666
No 492
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=49.30 E-value=9.8 Score=36.76 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcC-CCcEEEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMS-RKKFLLVL 79 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LiVL 79 (471)
++||||||..+...+.+.-. .+.+.+....+...... .+-..+..+- ...++..++....+.+.++ +.--+||+
T Consensus 63 ssGKttLaL~~ia~~q~~g~-~~a~ID~e~~ld~~~a~--~lGvdl~rll--v~~P~~~E~al~~~e~lirsg~~~lVVv 137 (322)
T PF00154_consen 63 SSGKTTLALHAIAEAQKQGG-ICAFIDAEHALDPEYAE--SLGVDLDRLL--VVQPDTGEQALWIAEQLIRSGAVDLVVV 137 (322)
T ss_dssp TSSHHHHHHHHHHHHHHTT--EEEEEESSS---HHHHH--HTT--GGGEE--EEE-SSHHHHHHHHHHHHHTTSESEEEE
T ss_pred CCchhhhHHHHHHhhhcccc-eeEEecCcccchhhHHH--hcCccccceE--EecCCcHHHHHHHHHHHhhcccccEEEE
Confidence 47999999988877654321 12222221111111111 0000111111 1123445555565666654 44568999
Q ss_pred ecC
Q 047511 80 DDV 82 (471)
Q Consensus 80 DDV 82 (471)
|.|
T Consensus 138 DSv 140 (322)
T PF00154_consen 138 DSV 140 (322)
T ss_dssp E-C
T ss_pred ecC
Confidence 999
No 493
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=49.23 E-value=9.1 Score=37.02 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|++++..+..
T Consensus 74 GtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 74 GTGKSTHIEQIAARLNW 90 (327)
T ss_pred CChHHHHHHHHHHHHCC
Confidence 78999999999988643
No 494
>PRK09099 type III secretion system ATPase; Provisional
Probab=49.18 E-value=4.1 Score=41.18 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=11.9
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.++..
T Consensus 173 G~GKTtLl~~ia~~ 186 (441)
T PRK09099 173 GVGKSTLMGMFARG 186 (441)
T ss_pred CCCHHHHHHHHhCC
Confidence 68999999888764
No 495
>PRK10818 cell division inhibitor MinD; Provisional
Probab=48.92 E-value=10 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 13 GvGKTt~a~nlA~~la~ 29 (270)
T PRK10818 13 GVGKTTSSAAIATGLAQ 29 (270)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999987654
No 496
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=48.61 E-value=6.7 Score=35.70 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=10.6
Q ss_pred CCccchHHHHHH
Q 047511 1 MIGETNLSVSIE 12 (471)
Q Consensus 1 ~iGKTtLA~~v~ 12 (471)
|+||||+|+.+.
T Consensus 22 G~GKtt~a~~~~ 33 (220)
T TIGR01618 22 GTGKTSTIKYLP 33 (220)
T ss_pred CCCHHHHHHhcC
Confidence 799999999875
No 497
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=48.53 E-value=11 Score=34.41 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++.++..
T Consensus 10 G~GKTtiaalll~~l~~ 26 (255)
T COG3640 10 GVGKTTIAALLLKRLLS 26 (255)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 79999999987666443
No 498
>PRK02496 adk adenylate kinase; Provisional
Probab=48.42 E-value=10 Score=33.26 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 11 GsGKst~a~~la~~~ 25 (184)
T PRK02496 11 GAGKGTQAVVLAEHL 25 (184)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998765
No 499
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=48.36 E-value=11 Score=31.91 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..+...+..
T Consensus 9 GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 9 GAGKSTLIDALITALRA 25 (148)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 78999999999887654
No 500
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=48.16 E-value=17 Score=38.60 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 76 LLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 76 LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+||+|.+---+......+..++ .+++|+|+-
T Consensus 268 vlIvDEaSMvd~~lm~~ll~al---~~~~rlIlv 298 (615)
T PRK10875 268 VLVVDEASMVDLPMMARLIDAL---PPHARVIFL 298 (615)
T ss_pred eEEEChHhcccHHHHHHHHHhc---ccCCEEEEe
Confidence 8899998444434445555554 467899888
Done!