Query 047511
Match_columns 471
No_of_seqs 353 out of 2995
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.7E-37 2.3E-41 318.0 7.6 250 1-269 162-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6E-30 2E-34 290.9 12.8 240 1-266 157-449 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.7E-29 6E-34 267.7 12.9 229 1-263 160-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.9E-27 1.3E-31 247.5 10.9 236 1-265 157-448 (591)
5 4fcg_A Uncharacterized protein 99.7 1.9E-18 6.4E-23 167.7 6.1 178 276-470 99-294 (328)
6 4fcg_A Uncharacterized protein 99.7 6.9E-17 2.4E-21 156.6 6.8 165 288-470 95-270 (328)
7 1ogq_A PGIP-2, polygalacturona 99.6 1.7E-16 5.9E-21 152.8 7.5 176 276-467 71-281 (313)
8 1ogq_A PGIP-2, polygalacturona 99.6 2.5E-16 8.5E-21 151.7 6.1 159 290-466 142-303 (313)
9 3rgz_A Protein brassinosteroid 99.6 8.3E-16 2.8E-20 166.0 8.6 102 276-377 437-547 (768)
10 4ecn_A Leucine-rich repeat pro 99.6 3.3E-16 1.1E-20 169.4 5.1 90 289-378 440-558 (876)
11 3zyi_A Leucine-rich repeat-con 99.6 2.4E-15 8.1E-20 152.4 10.8 177 276-470 94-282 (452)
12 3rgz_A Protein brassinosteroid 99.6 1.3E-15 4.6E-20 164.4 8.8 88 290-377 435-523 (768)
13 3zyj_A Leucine-rich repeat-con 99.6 2.2E-15 7.5E-20 152.1 9.3 177 276-470 83-271 (440)
14 1ozn_A Reticulon 4 receptor; N 99.6 3.8E-15 1.3E-19 141.3 9.6 176 276-467 51-238 (285)
15 1ozn_A Reticulon 4 receptor; N 99.6 4.3E-15 1.5E-19 140.9 9.3 165 290-470 49-217 (285)
16 3rfs_A Internalin B, repeat mo 99.6 8.7E-15 3E-19 137.9 11.0 173 277-467 37-218 (272)
17 4eco_A Uncharacterized protein 99.6 5.1E-16 1.7E-20 164.0 1.9 175 275-468 200-416 (636)
18 2z80_A TOLL-like receptor 2, v 99.5 6.4E-15 2.2E-19 144.2 8.3 149 277-432 72-233 (353)
19 1h6u_A Internalin H; cell adhe 99.5 4.1E-14 1.4E-18 135.8 12.1 172 272-470 54-233 (308)
20 4eco_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 153.0 9.5 148 275-432 241-413 (636)
21 3m19_A Variable lymphocyte rec 99.5 2.3E-14 7.8E-19 133.3 9.7 163 288-468 28-193 (251)
22 3zyj_A Leucine-rich repeat-con 99.5 1.7E-14 5.8E-19 145.6 9.2 176 275-467 106-292 (440)
23 2id5_A Lingo-1, leucine rich r 99.5 4.1E-14 1.4E-18 144.2 12.1 150 276-432 51-211 (477)
24 2o6q_A Variable lymphocyte rec 99.5 3E-14 1E-18 134.0 10.2 161 290-467 54-218 (270)
25 3vq2_A TLR4, TOLL-like recepto 99.5 4.2E-15 1.5E-19 156.2 4.8 167 290-470 369-537 (606)
26 2z66_A Variable lymphocyte rec 99.5 1E-14 3.6E-19 139.7 6.8 80 295-375 76-157 (306)
27 1h6t_A Internalin B; cell adhe 99.5 6.7E-14 2.3E-18 133.1 12.1 153 292-470 63-216 (291)
28 3zyi_A Leucine-rich repeat-con 99.5 2.3E-14 8E-19 145.1 9.4 176 275-467 117-303 (452)
29 2o6q_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 133.4 9.9 82 294-376 82-165 (270)
30 1p9a_G Platelet glycoprotein I 99.5 4.1E-14 1.4E-18 134.6 9.8 159 290-467 48-208 (290)
31 1xku_A Decorin; proteoglycan, 99.5 7.6E-14 2.6E-18 135.2 11.2 177 276-470 71-279 (330)
32 4ecn_A Leucine-rich repeat pro 99.5 2.8E-14 9.7E-19 154.3 8.9 148 275-432 442-630 (876)
33 1h6u_A Internalin H; cell adhe 99.5 6.7E-14 2.3E-18 134.3 10.5 153 292-470 58-211 (308)
34 3oja_B Anopheles plasmodium-re 99.5 4.4E-14 1.5E-18 148.2 9.8 83 292-376 94-179 (597)
35 3o6n_A APL1; leucine-rich repe 99.5 7.9E-14 2.7E-18 138.3 10.6 85 291-377 87-174 (390)
36 2z62_A TOLL-like receptor 4, v 99.5 4.4E-14 1.5E-18 133.3 7.9 177 276-467 47-237 (276)
37 2z80_A TOLL-like receptor 2, v 99.5 1.3E-13 4.4E-18 134.9 11.5 165 290-470 69-238 (353)
38 4ezg_A Putative uncharacterize 99.5 3.5E-14 1.2E-18 126.9 6.3 154 294-468 41-195 (197)
39 1p9a_G Platelet glycoprotein I 99.5 4.8E-14 1.7E-18 134.0 7.5 161 289-470 25-188 (290)
40 1m9s_A Internalin B; cell inva 99.5 1E-13 3.6E-18 144.7 10.7 154 291-470 59-213 (605)
41 2z66_A Variable lymphocyte rec 99.5 1.8E-14 6.3E-19 138.0 4.5 136 289-432 43-186 (306)
42 3v47_A TOLL-like receptor 5B a 99.5 7.8E-14 2.7E-18 141.2 9.0 102 276-378 49-164 (455)
43 2ft3_A Biglycan; proteoglycan, 99.5 1.5E-13 5.3E-18 133.2 10.6 161 290-470 95-280 (332)
44 3v47_A TOLL-like receptor 5B a 99.4 2.1E-13 7.2E-18 138.0 10.8 18 293-310 150-167 (455)
45 1xku_A Decorin; proteoglycan, 99.4 2.5E-13 8.4E-18 131.6 10.6 159 293-468 141-307 (330)
46 1wwl_A Monocyte differentiatio 99.4 3E-14 1E-18 137.0 3.9 84 294-377 118-210 (312)
47 2z81_A CD282 antigen, TOLL-lik 99.4 9E-14 3.1E-18 144.2 7.6 165 290-469 43-211 (549)
48 3oja_B Anopheles plasmodium-re 99.4 1.1E-13 3.8E-18 145.1 8.4 177 276-470 94-317 (597)
49 2z81_A CD282 antigen, TOLL-lik 99.4 3.7E-13 1.3E-17 139.6 12.0 181 275-467 44-236 (549)
50 2ft3_A Biglycan; proteoglycan, 99.4 1.3E-13 4.3E-18 133.8 7.7 163 290-470 71-257 (332)
51 2z62_A TOLL-like receptor 4, v 99.4 1.9E-13 6.6E-18 128.8 8.6 165 290-470 45-216 (276)
52 3o6n_A APL1; leucine-rich repe 99.4 2E-13 6.9E-18 135.4 8.4 177 276-470 88-311 (390)
53 1xeu_A Internalin C; cellular 99.4 3.8E-13 1.3E-17 125.9 9.5 151 293-470 37-188 (263)
54 3vq2_A TLR4, TOLL-like recepto 99.4 1.3E-13 4.6E-18 144.7 6.7 177 276-468 371-559 (606)
55 2xwt_C Thyrotropin receptor; s 99.4 1.1E-13 3.8E-18 127.6 5.1 162 292-470 50-221 (239)
56 3rfs_A Internalin B, repeat mo 99.4 3.7E-13 1.2E-17 126.7 8.7 160 292-470 36-197 (272)
57 4fmz_A Internalin; leucine ric 99.4 8.1E-13 2.8E-17 128.7 11.1 79 293-376 173-251 (347)
58 2id5_A Lingo-1, leucine rich r 99.4 6.3E-13 2.2E-17 135.4 10.7 136 290-432 49-187 (477)
59 3t6q_A CD180 antigen; protein- 99.4 5.8E-13 2E-17 139.8 10.7 166 290-470 369-539 (606)
60 3t6q_A CD180 antigen; protein- 99.4 4.1E-13 1.4E-17 141.0 9.4 163 292-468 273-463 (606)
61 4fmz_A Internalin; leucine ric 99.4 1.1E-12 3.6E-17 127.9 11.7 96 277-376 84-185 (347)
62 2z63_A TOLL-like receptor 4, v 99.4 1.3E-13 4.6E-18 143.5 4.6 164 291-468 367-532 (570)
63 1wwl_A Monocyte differentiatio 99.4 2.1E-13 7.2E-18 131.1 5.5 163 295-470 93-269 (312)
64 3m19_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 123.1 8.7 156 297-470 14-171 (251)
65 3j0a_A TOLL-like receptor 5; m 99.4 1E-12 3.6E-17 143.3 11.3 101 276-377 43-157 (844)
66 1h6t_A Internalin B; cell adhe 99.4 6.8E-13 2.3E-17 126.2 8.0 152 293-470 42-194 (291)
67 2xwt_C Thyrotropin receptor; s 99.4 3.1E-13 1.1E-17 124.6 4.5 168 277-464 51-236 (239)
68 3j0a_A TOLL-like receptor 5; m 99.4 1.2E-12 4.2E-17 142.7 9.9 164 290-467 41-217 (844)
69 2z7x_B TOLL-like receptor 1, v 99.3 3E-12 1E-16 131.9 11.9 86 291-380 39-127 (520)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.6E-12 8.9E-17 133.7 11.1 76 276-354 71-156 (562)
71 2v70_A SLIT-2, SLIT homolog 2 99.3 9.6E-13 3.3E-17 119.7 6.8 134 289-432 26-164 (220)
72 2v9t_B SLIT homolog 2 protein 99.3 2.4E-12 8.1E-17 117.1 9.0 137 287-432 24-163 (220)
73 2v9t_B SLIT homolog 2 protein 99.3 1.4E-12 4.9E-17 118.6 7.4 148 300-467 14-165 (220)
74 2ast_B S-phase kinase-associat 99.3 2.3E-13 7.9E-18 132.0 2.1 176 277-464 89-282 (336)
75 1m9s_A Internalin B; cell inva 99.3 1.3E-12 4.4E-17 136.5 7.5 152 293-470 39-191 (605)
76 2z63_A TOLL-like receptor 4, v 99.3 1.4E-12 4.8E-17 135.7 7.8 116 276-394 47-175 (570)
77 3e6j_A Variable lymphocyte rec 99.3 2E-12 6.9E-17 118.4 7.6 136 286-432 31-170 (229)
78 1o6v_A Internalin A; bacterial 99.3 4.6E-12 1.6E-16 128.7 11.0 168 274-469 61-236 (466)
79 1ziw_A TOLL-like receptor 3; i 99.3 2.5E-12 8.5E-17 137.0 9.3 129 297-432 25-156 (680)
80 1o6v_A Internalin A; bacterial 99.3 6.1E-12 2.1E-16 127.8 11.6 168 277-470 217-391 (466)
81 3bz5_A Internalin-J, INLJ; leu 99.3 1E-11 3.4E-16 125.7 13.0 92 276-375 59-155 (457)
82 3oja_A Leucine-rich immune mol 99.3 1.3E-12 4.4E-17 133.4 6.0 160 291-470 52-230 (487)
83 4g8a_A TOLL-like receptor 4; l 99.3 8.6E-13 3E-17 138.9 4.6 85 292-378 71-158 (635)
84 3oja_A Leucine-rich immune mol 99.3 1.1E-12 3.8E-17 133.9 5.2 150 297-467 99-250 (487)
85 4glp_A Monocyte differentiatio 99.3 2.2E-12 7.6E-17 123.7 6.7 166 289-471 107-289 (310)
86 2z7x_B TOLL-like receptor 1, v 99.3 4.8E-12 1.6E-16 130.3 9.5 157 294-468 321-482 (520)
87 2o6s_A Variable lymphocyte rec 99.3 2.4E-12 8.2E-17 115.9 6.4 128 297-432 28-159 (208)
88 3bz5_A Internalin-J, INLJ; leu 99.3 7E-12 2.4E-16 126.9 10.1 172 276-470 37-228 (457)
89 4glp_A Monocyte differentiatio 99.3 1.5E-12 5.2E-17 124.9 4.9 170 278-468 114-308 (310)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 7.2E-12 2.5E-16 130.3 10.3 87 290-380 69-158 (562)
91 2xot_A Amphoterin-induced prot 99.3 5.1E-12 1.7E-16 123.9 8.4 163 286-467 30-202 (361)
92 2ast_B S-phase kinase-associat 99.3 1.1E-12 3.6E-17 127.3 2.4 165 290-465 86-258 (336)
93 4ezg_A Putative uncharacterize 99.2 8E-12 2.7E-16 111.5 7.3 130 292-432 61-192 (197)
94 3e6j_A Variable lymphocyte rec 99.2 1.5E-11 5E-16 112.6 9.0 109 290-402 57-168 (229)
95 2xot_A Amphoterin-induced prot 99.2 2.9E-12 9.8E-17 125.7 4.2 136 290-432 56-200 (361)
96 2ca6_A RAN GTPase-activating p 99.2 4.2E-12 1.5E-16 125.6 5.2 134 294-432 91-255 (386)
97 3o53_A Protein LRIM1, AGAP0063 99.2 3.2E-12 1.1E-16 123.0 4.2 152 293-470 76-230 (317)
98 4g8a_A TOLL-like receptor 4; l 99.2 1.1E-11 3.9E-16 130.3 8.6 137 286-432 43-184 (635)
99 2v70_A SLIT-2, SLIT homolog 2 99.2 1.9E-11 6.3E-16 111.2 8.8 148 300-466 14-165 (220)
100 2o6s_A Variable lymphocyte rec 99.2 1.7E-11 6E-16 110.2 8.4 150 300-468 10-162 (208)
101 1ziw_A TOLL-like receptor 3; i 99.2 3.1E-11 1E-15 128.5 11.6 165 290-470 398-600 (680)
102 2ca6_A RAN GTPase-activating p 99.2 3.4E-12 1.2E-16 126.3 3.6 184 277-467 28-257 (386)
103 3o53_A Protein LRIM1, AGAP0063 99.2 5.8E-12 2E-16 121.2 4.6 170 276-467 75-250 (317)
104 1xeu_A Internalin C; cellular 99.2 5.8E-11 2E-15 111.0 10.6 141 275-432 35-183 (263)
105 4b8c_D Glucose-repressible alc 99.2 8.1E-12 2.8E-16 133.5 5.1 108 290-402 217-325 (727)
106 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 106.0 6.6 134 296-470 23-163 (168)
107 1dce_A Protein (RAB geranylger 99.2 1.6E-13 5.4E-18 142.4 -8.1 157 294-470 346-549 (567)
108 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.6E-16 104.6 3.7 77 297-376 17-96 (149)
109 4ay9_X Follicle-stimulating ho 99.1 2.4E-11 8.2E-16 118.6 5.4 89 288-379 23-115 (350)
110 1a9n_A U2A', U2A'; complex (nu 99.1 5.1E-11 1.8E-15 104.1 5.7 132 292-432 14-151 (176)
111 1ds9_A Outer arm dynein; leuci 99.1 9.2E-12 3.1E-16 111.2 -0.2 137 309-467 37-185 (198)
112 3cvr_A Invasion plasmid antige 99.1 1.4E-10 4.7E-15 119.9 8.2 141 294-468 97-244 (571)
113 1jl5_A Outer protein YOPM; leu 99.1 2.6E-10 8.8E-15 115.2 10.1 116 297-432 131-248 (454)
114 1jl5_A Outer protein YOPM; leu 99.1 1.4E-10 4.9E-15 117.1 8.1 150 297-470 91-253 (454)
115 2wfh_A SLIT homolog 2 protein 99.1 2.3E-10 8E-15 101.6 8.5 86 289-378 25-112 (193)
116 1w8a_A SLIT protein; signaling 99.1 1.5E-10 5.1E-15 102.7 7.2 88 289-379 23-113 (192)
117 2ell_A Acidic leucine-rich nuc 99.1 9.5E-11 3.2E-15 101.5 5.7 114 318-470 22-136 (168)
118 1ds9_A Outer arm dynein; leuci 99.0 2.6E-12 8.8E-17 114.8 -6.0 129 290-427 41-180 (198)
119 3g06_A SSPH2 (leucine-rich rep 99.0 5.7E-10 1.9E-14 116.7 10.8 60 295-362 99-158 (622)
120 1dce_A Protein (RAB geranylger 99.0 3.8E-10 1.3E-14 117.0 8.3 76 298-377 442-517 (567)
121 3cvr_A Invasion plasmid antige 99.0 2.7E-10 9.4E-15 117.7 7.0 69 297-376 80-148 (571)
122 2je0_A Acidic leucine-rich nuc 99.0 3.7E-10 1.3E-14 95.6 6.4 89 288-378 33-123 (149)
123 4b8c_D Glucose-repressible alc 99.0 8.5E-11 2.9E-15 125.6 2.6 118 305-432 209-327 (727)
124 3g06_A SSPH2 (leucine-rich rep 99.0 1.1E-09 3.8E-14 114.5 10.1 74 295-379 79-152 (622)
125 2wfh_A SLIT homolog 2 protein 99.0 1.8E-09 6.3E-14 95.7 9.7 72 301-376 14-86 (193)
126 3goz_A Leucine-rich repeat-con 99.0 7.5E-10 2.6E-14 108.4 7.2 51 415-467 247-297 (362)
127 3goz_A Leucine-rich repeat-con 98.9 9.7E-11 3.3E-15 114.8 -0.0 168 291-470 44-241 (362)
128 1w8a_A SLIT protein; signaling 98.9 2.5E-09 8.5E-14 94.8 9.0 86 293-378 50-136 (192)
129 2o6r_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 92.4 8.2 80 297-378 28-110 (177)
130 2r9u_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 91.6 7.6 90 287-380 25-117 (174)
131 1a9n_A U2A', U2A'; complex (nu 98.8 6.3E-09 2.2E-13 90.7 8.0 121 276-402 14-149 (176)
132 1z7x_W Ribonuclease inhibitor; 98.8 3.9E-10 1.3E-14 114.0 0.0 167 290-467 49-240 (461)
133 1z7x_W Ribonuclease inhibitor; 98.8 5.6E-10 1.9E-14 112.8 1.0 164 292-467 222-411 (461)
134 3g39_A Variable lymphocyte rec 98.8 8.9E-09 3E-13 89.3 7.7 89 288-380 23-114 (170)
135 4ay9_X Follicle-stimulating ho 98.7 6.6E-09 2.2E-13 101.2 5.9 98 300-402 12-113 (350)
136 2ifg_A High affinity nerve gro 98.7 2E-08 6.9E-13 97.5 7.6 95 285-381 20-116 (347)
137 2o6r_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 86.1 7.9 89 290-380 45-136 (177)
138 2r9u_A Variable lymphocyte rec 98.7 5.1E-08 1.8E-12 84.8 8.2 98 299-402 14-114 (174)
139 3g39_A Variable lymphocyte rec 98.7 5.3E-08 1.8E-12 84.3 8.1 100 298-402 10-111 (170)
140 1w5s_A Origin recognition comp 98.6 7.6E-08 2.6E-12 95.6 10.2 238 1-258 62-387 (412)
141 3ogk_B Coronatine-insensitive 98.6 1.5E-08 5E-13 105.8 4.9 154 294-463 189-351 (592)
142 3ogk_B Coronatine-insensitive 98.6 2.4E-08 8.2E-13 104.2 5.6 156 295-463 218-412 (592)
143 2p1m_B Transport inhibitor res 98.4 7.7E-08 2.6E-12 100.3 4.0 60 295-354 128-194 (594)
144 2qen_A Walker-type ATPase; unk 98.4 3.7E-07 1.3E-11 88.4 8.0 115 135-263 226-349 (350)
145 3un9_A NLR family member X1; l 98.4 1.5E-08 5.2E-13 99.3 -2.1 81 297-378 101-193 (372)
146 2fna_A Conserved hypothetical 98.4 9.2E-07 3.2E-11 85.7 9.6 109 138-261 233-355 (357)
147 2p1m_B Transport inhibitor res 98.4 2.4E-07 8.2E-12 96.6 5.1 79 295-373 182-270 (594)
148 2ra8_A Uncharacterized protein 98.3 2.5E-07 8.7E-12 90.0 3.7 143 312-467 164-320 (362)
149 2ifg_A High affinity nerve gro 98.3 1.2E-06 4E-11 85.0 7.6 79 301-381 12-93 (347)
150 3sb4_A Hypothetical leucine ri 98.2 8.5E-07 2.9E-11 85.3 5.1 98 343-460 225-327 (329)
151 3un9_A NLR family member X1; l 98.2 2.5E-07 8.6E-12 90.6 0.1 48 414-466 204-251 (372)
152 3sb4_A Hypothetical leucine ri 98.1 2.3E-06 8E-11 82.2 4.6 49 412-470 264-313 (329)
153 2qby_B CDC6 homolog 3, cell di 98.0 9.2E-05 3.1E-09 72.5 15.8 228 1-245 55-339 (384)
154 1njg_A DNA polymerase III subu 98.0 6.4E-06 2.2E-10 74.8 6.3 84 71-158 124-231 (250)
155 1hqc_A RUVB; extended AAA-ATPa 97.9 9.5E-06 3.2E-10 77.6 4.8 130 110-243 170-323 (324)
156 3rw6_A Nuclear RNA export fact 97.8 2.1E-05 7.3E-10 72.7 6.3 84 294-379 167-262 (267)
157 2ra8_A Uncharacterized protein 97.8 6.5E-06 2.2E-10 80.0 2.8 133 293-432 168-318 (362)
158 4fdw_A Leucine rich hypothetic 97.8 5.4E-05 1.8E-09 74.7 9.4 160 291-469 174-360 (401)
159 2chg_A Replication factor C sm 97.8 6.3E-05 2.2E-09 67.1 9.1 79 72-154 101-203 (226)
160 1sxj_B Activator 1 37 kDa subu 97.7 0.00011 3.9E-09 69.8 9.2 83 71-157 105-212 (323)
161 2v1u_A Cell division control p 97.6 0.00034 1.2E-08 68.3 12.3 226 1-245 54-351 (387)
162 1io0_A Tropomodulin; LRR prote 97.6 2.5E-05 8.7E-10 68.2 3.3 82 293-375 32-128 (185)
163 2qby_A CDC6 homolog 1, cell di 97.5 0.00017 6E-09 70.3 7.5 231 1-244 55-347 (386)
164 1io0_A Tropomodulin; LRR prote 97.4 3.2E-05 1.1E-09 67.6 1.3 123 313-466 29-163 (185)
165 1fnn_A CDC6P, cell division co 97.4 0.00029 9.9E-09 68.9 8.2 227 1-245 54-351 (389)
166 3e4g_A ATP synthase subunit S, 97.4 0.00017 5.7E-09 62.0 5.5 89 290-378 54-149 (176)
167 4fdw_A Leucine rich hypothetic 97.2 0.00045 1.5E-08 68.1 6.3 79 292-375 153-233 (401)
168 3e4g_A ATP synthase subunit S, 97.1 0.00019 6.6E-09 61.6 3.0 99 311-432 52-150 (176)
169 3rw6_A Nuclear RNA export fact 97.0 5.7E-05 1.9E-09 69.8 -1.5 79 297-377 141-229 (267)
170 1iqp_A RFCS; clamp loader, ext 97.0 0.001 3.4E-08 63.3 6.8 83 72-158 109-215 (327)
171 2chq_A Replication factor C sm 96.1 0.017 5.7E-07 54.4 8.7 38 72-109 101-138 (319)
172 2z4s_A Chromosomal replication 95.9 0.0044 1.5E-07 61.7 3.7 19 1-19 140-158 (440)
173 1jr3_A DNA polymerase III subu 95.7 0.01 3.5E-07 57.4 5.6 39 71-109 117-155 (373)
174 3ec2_A DNA replication protein 95.4 0.0072 2.4E-07 52.0 2.7 17 1-17 48-64 (180)
175 1sxj_D Activator 1 41 kDa subu 95.2 0.032 1.1E-06 53.4 6.9 17 1-17 68-84 (353)
176 3rfe_A Platelet glycoprotein I 94.2 0.064 2.2E-06 43.4 5.4 51 301-354 12-65 (130)
177 3eie_A Vacuolar protein sortin 94.2 0.066 2.3E-06 50.7 6.3 17 1-17 61-77 (322)
178 3h4m_A Proteasome-activating n 94.1 0.032 1.1E-06 51.7 3.9 16 1-16 61-76 (285)
179 3pfi_A Holliday junction ATP-d 94.1 0.047 1.6E-06 52.0 5.2 16 1-16 65-80 (338)
180 4gt6_A Cell surface protein; l 94.1 0.11 3.9E-06 50.5 8.1 125 315-464 260-388 (394)
181 3bos_A Putative DNA replicatio 94.0 0.034 1.2E-06 49.8 3.7 18 1-18 62-79 (242)
182 2w58_A DNAI, primosome compone 93.9 0.024 8.1E-07 49.6 2.4 18 1-18 64-81 (202)
183 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.16 5.6E-06 46.0 8.0 16 1-16 49-64 (262)
184 1sxj_E Activator 1 40 kDa subu 93.7 0.024 8.1E-07 54.4 2.1 37 73-109 134-170 (354)
185 4fs7_A Uncharacterized protein 93.4 0.26 8.9E-06 47.9 9.1 138 293-459 249-393 (394)
186 2qp9_X Vacuolar protein sortin 93.1 0.18 6.2E-06 48.4 7.4 16 1-16 94-109 (355)
187 1jbk_A CLPB protein; beta barr 93.1 0.016 5.4E-07 49.8 -0.1 17 1-17 53-69 (195)
188 3rfe_A Platelet glycoprotein I 92.7 0.13 4.4E-06 41.5 4.8 35 297-331 31-66 (130)
189 3syl_A Protein CBBX; photosynt 92.6 0.033 1.1E-06 52.2 1.3 17 1-17 77-93 (309)
190 3pvs_A Replication-associated 92.4 0.24 8.3E-06 49.1 7.4 17 1-17 60-76 (447)
191 1xwi_A SKD1 protein; VPS4B, AA 92.0 0.14 4.9E-06 48.4 4.9 15 1-15 55-69 (322)
192 1a5t_A Delta prime, HOLB; zinc 91.8 0.2 6.8E-06 47.6 5.7 38 72-109 107-144 (334)
193 3te6_A Regulatory protein SIR3 91.6 0.14 4.9E-06 48.1 4.4 19 1-19 55-73 (318)
194 1d2n_A N-ethylmaleimide-sensit 91.5 0.066 2.3E-06 49.2 2.0 15 1-15 74-88 (272)
195 1l8q_A Chromosomal replication 91.1 0.091 3.1E-06 49.7 2.5 17 1-17 47-63 (324)
196 1sxj_A Activator 1 95 kDa subu 91.1 0.15 5.1E-06 51.7 4.2 15 1-15 87-101 (516)
197 1sxj_C Activator 1 40 kDa subu 90.9 0.71 2.4E-05 43.8 8.6 16 1-16 56-71 (340)
198 3u61_B DNA polymerase accessor 90.8 0.068 2.3E-06 50.5 1.2 38 72-109 104-142 (324)
199 3d8b_A Fidgetin-like protein 1 90.7 0.23 8E-06 47.6 5.0 15 1-15 127-141 (357)
200 4fs7_A Uncharacterized protein 90.3 0.74 2.5E-05 44.6 8.3 125 315-464 248-376 (394)
201 2vhj_A Ntpase P4, P4; non- hyd 89.6 0.11 3.8E-06 48.7 1.6 25 57-82 167-191 (331)
202 4gt6_A Cell surface protein; l 89.6 0.87 3E-05 44.1 8.1 123 291-429 259-386 (394)
203 3t15_A Ribulose bisphosphate c 89.1 0.15 5E-06 47.6 2.0 16 1-16 46-61 (293)
204 3vfd_A Spastin; ATPase, microt 88.5 0.5 1.7E-05 45.8 5.6 15 1-15 158-172 (389)
205 4b4t_J 26S protease regulatory 88.2 0.51 1.8E-05 45.8 5.2 19 1-19 192-210 (405)
206 3cf0_A Transitional endoplasmi 88.2 0.18 6E-06 47.2 1.9 16 1-16 59-74 (301)
207 2zan_A Vacuolar protein sortin 88.1 0.22 7.4E-06 49.5 2.6 15 1-15 177-191 (444)
208 4h09_A Hypothetical leucine ri 87.3 1.9 6.4E-05 41.3 8.8 80 292-375 235-317 (379)
209 4h09_A Hypothetical leucine ri 85.8 1.6 5.4E-05 41.9 7.4 125 291-429 211-341 (379)
210 1pgv_A TMD-1, tropomodulin TMD 85.2 0.62 2.1E-05 40.4 3.6 63 295-358 39-111 (197)
211 1pgv_A TMD-1, tropomodulin TMD 84.1 0.44 1.5E-05 41.3 2.2 63 316-379 37-109 (197)
212 1iy2_A ATP-dependent metallopr 81.1 0.5 1.7E-05 43.4 1.5 16 1-16 83-98 (278)
213 1sky_E F1-ATPase, F1-ATP synth 80.1 0.49 1.7E-05 46.8 1.0 19 1-19 161-179 (473)
214 3ice_A Transcription terminati 78.0 0.34 1.2E-05 46.6 -0.8 18 1-18 184-201 (422)
215 4b4t_H 26S protease regulatory 78.0 0.53 1.8E-05 46.4 0.6 19 1-19 253-271 (467)
216 4gp7_A Metallophosphoesterase; 77.8 2.6 8.9E-05 35.3 4.8 19 64-82 92-110 (171)
217 4b4t_K 26S protease regulatory 76.4 0.58 2E-05 45.9 0.3 18 1-18 216-233 (428)
218 2p65_A Hypothetical protein PF 76.4 0.79 2.7E-05 38.6 1.2 17 1-17 53-69 (187)
219 2kjq_A DNAA-related protein; s 76.1 1.2 4.2E-05 36.5 2.2 17 1-17 46-62 (149)
220 1qhx_A CPT, protein (chloramph 75.7 0.94 3.2E-05 38.1 1.4 16 1-16 13-28 (178)
221 2ce7_A Cell division protein F 75.6 0.7 2.4E-05 46.1 0.7 16 1-16 59-74 (476)
222 4b4t_L 26S protease subunit RP 75.1 0.68 2.3E-05 45.5 0.4 18 1-18 225-242 (437)
223 3kb2_A SPBC2 prophage-derived 74.7 1.1 3.7E-05 37.3 1.6 16 1-16 11-26 (173)
224 3cf2_A TER ATPase, transitiona 74.5 0.71 2.4E-05 49.1 0.4 17 1-17 248-264 (806)
225 3hu3_A Transitional endoplasmi 74.5 0.64 2.2E-05 46.6 0.1 15 1-15 248-262 (489)
226 1nks_A Adenylate kinase; therm 73.0 1.3 4.5E-05 37.5 1.8 16 1-16 11-26 (194)
227 4b4t_M 26S protease regulatory 72.7 0.7 2.4E-05 45.4 -0.1 18 1-18 225-242 (434)
228 3n70_A Transport activator; si 72.2 1.2 4.2E-05 36.2 1.3 35 75-109 78-112 (145)
229 3trf_A Shikimate kinase, SK; a 71.4 1.4 5E-05 37.2 1.6 15 1-15 15-29 (185)
230 2jaq_A Deoxyguanosine kinase; 71.3 1.4 4.9E-05 37.7 1.6 16 1-16 10-25 (205)
231 3vaa_A Shikimate kinase, SK; s 70.7 1.5 5.2E-05 37.7 1.6 16 1-16 35-50 (199)
232 1kht_A Adenylate kinase; phosp 70.4 1.7 5.7E-05 36.9 1.8 16 1-16 13-28 (192)
233 4b4t_I 26S protease regulatory 70.0 0.78 2.7E-05 44.8 -0.5 19 1-19 226-244 (437)
234 3t61_A Gluconokinase; PSI-biol 69.7 1.6 5.6E-05 37.5 1.6 15 1-15 28-42 (202)
235 1via_A Shikimate kinase; struc 69.4 1.7 5.9E-05 36.4 1.6 16 1-16 14-29 (175)
236 1in4_A RUVB, holliday junction 69.1 1.7 5.7E-05 41.1 1.6 38 110-151 182-219 (334)
237 2r8r_A Sensor protein; KDPD, P 68.9 2 6.7E-05 38.1 1.9 18 1-18 16-33 (228)
238 1lv7_A FTSH; alpha/beta domain 68.2 1.7 5.8E-05 39.1 1.4 15 1-15 55-69 (257)
239 2r62_A Cell division protease 68.1 1.8 6.3E-05 39.1 1.6 16 1-16 54-69 (268)
240 1kag_A SKI, shikimate kinase I 68.1 1.8 6.1E-05 36.1 1.4 15 1-15 14-28 (173)
241 2rhm_A Putative kinase; P-loop 67.6 1.9 6.7E-05 36.5 1.6 15 1-15 15-29 (193)
242 1xp8_A RECA protein, recombina 67.4 1.7 5.9E-05 41.6 1.3 77 1-82 84-161 (366)
243 2ze6_A Isopentenyl transferase 67.3 2 6.7E-05 38.8 1.6 15 1-15 11-25 (253)
244 1ly1_A Polynucleotide kinase; 67.3 1.8 6.1E-05 36.3 1.3 13 1-13 12-24 (181)
245 3iij_A Coilin-interacting nucl 66.0 2.2 7.5E-05 35.9 1.6 15 1-15 21-35 (180)
246 4a1f_A DNAB helicase, replicat 65.6 4.6 0.00016 38.2 3.8 17 1-17 56-72 (338)
247 1zp6_A Hypothetical protein AT 65.5 1.9 6.4E-05 36.6 1.1 14 1-14 19-32 (191)
248 1ye8_A Protein THEP1, hypothet 65.4 2.3 7.9E-05 36.0 1.6 16 1-16 10-25 (178)
249 1ixz_A ATP-dependent metallopr 65.1 2.2 7.4E-05 38.3 1.4 16 1-16 59-74 (254)
250 3uie_A Adenylyl-sulfate kinase 65.1 2.5 8.4E-05 36.4 1.8 16 1-16 35-50 (200)
251 2yvu_A Probable adenylyl-sulfa 64.9 2.5 8.6E-05 35.8 1.8 17 1-17 23-39 (186)
252 2plr_A DTMP kinase, probable t 64.7 2.4 8.2E-05 36.6 1.6 17 1-17 14-30 (213)
253 2vli_A Antibiotic resistance p 64.7 2.3 7.9E-05 35.7 1.5 16 1-16 15-30 (183)
254 4eun_A Thermoresistant glucoki 64.5 2.4 8.3E-05 36.5 1.6 15 1-15 39-53 (200)
255 3lw7_A Adenylate kinase relate 64.5 2.2 7.4E-05 35.4 1.3 13 1-14 11-23 (179)
256 3hr8_A Protein RECA; alpha and 64.3 1.9 6.4E-05 41.1 0.9 77 1-82 71-148 (356)
257 2x8a_A Nuclear valosin-contain 64.2 2.3 7.8E-05 38.9 1.4 15 1-15 54-68 (274)
258 1qvr_A CLPB protein; coiled co 64.0 3.1 0.00011 44.8 2.6 17 1-17 201-217 (854)
259 1e6c_A Shikimate kinase; phosp 64.0 2.6 8.7E-05 35.1 1.6 16 1-16 12-27 (173)
260 4dzz_A Plasmid partitioning pr 63.8 2.8 9.6E-05 35.9 1.9 17 1-17 12-28 (206)
261 3b9p_A CG5977-PA, isoform A; A 63.7 2.3 7.9E-05 39.1 1.4 15 1-15 64-78 (297)
262 1zuh_A Shikimate kinase; alpha 63.4 2.7 9.1E-05 34.9 1.6 16 1-16 17-32 (168)
263 2wwf_A Thymidilate kinase, put 63.3 2.8 9.5E-05 36.2 1.8 17 1-17 20-36 (212)
264 1xjc_A MOBB protein homolog; s 63.2 3 0.0001 35.0 1.9 18 1-18 14-31 (169)
265 3c8u_A Fructokinase; YP_612366 62.8 3.1 0.00011 36.0 2.0 16 1-16 32-47 (208)
266 3cwq_A Para family chromosome 62.8 2.7 9.2E-05 36.6 1.6 18 1-18 11-28 (209)
267 2z0h_A DTMP kinase, thymidylat 62.7 3.1 0.0001 35.4 1.9 16 1-16 10-25 (197)
268 1tev_A UMP-CMP kinase; ploop, 62.7 2.8 9.4E-05 35.5 1.6 15 1-15 13-27 (196)
269 2qgz_A Helicase loader, putati 62.7 2.7 9.1E-05 39.2 1.6 16 1-16 162-177 (308)
270 1knq_A Gluconate kinase; ALFA/ 62.5 2.6 9E-05 35.2 1.4 15 1-15 18-32 (175)
271 2pt5_A Shikimate kinase, SK; a 62.4 2.8 9.7E-05 34.6 1.6 15 1-15 10-24 (168)
272 1r6b_X CLPA protein; AAA+, N-t 62.3 4.1 0.00014 43.1 3.2 17 1-17 217-233 (758)
273 3cm0_A Adenylate kinase; ATP-b 62.3 2.8 9.7E-05 35.3 1.6 15 1-15 14-28 (186)
274 2iyv_A Shikimate kinase, SK; t 62.3 2.8 9.7E-05 35.3 1.6 15 1-15 12-26 (184)
275 1nn5_A Similar to deoxythymidy 62.2 3.1 0.0001 36.0 1.8 17 1-17 19-35 (215)
276 2pbr_A DTMP kinase, thymidylat 62.1 2.8 9.7E-05 35.5 1.6 16 1-16 10-25 (195)
277 3uk6_A RUVB-like 2; hexameric 62.0 2.7 9.4E-05 39.9 1.6 17 1-17 80-96 (368)
278 2bdt_A BH3686; alpha-beta prot 61.9 2.6 8.8E-05 35.8 1.3 13 1-13 12-24 (189)
279 2bwj_A Adenylate kinase 5; pho 61.8 2.9 9.9E-05 35.6 1.6 16 1-16 22-37 (199)
280 1kgd_A CASK, peripheral plasma 61.8 2.8 9.5E-05 35.4 1.4 15 1-15 15-29 (180)
281 2c95_A Adenylate kinase 1; tra 61.1 3.1 0.0001 35.4 1.6 15 1-15 19-33 (196)
282 1ofh_A ATP-dependent HSL prote 60.7 3 0.0001 38.4 1.6 16 1-16 60-75 (310)
283 3hjn_A DTMP kinase, thymidylat 60.7 3.5 0.00012 35.6 1.9 18 1-18 10-27 (197)
284 2cdn_A Adenylate kinase; phosp 60.6 3.1 0.00011 35.7 1.6 15 1-15 30-44 (201)
285 1gtv_A TMK, thymidylate kinase 60.2 2.4 8.1E-05 36.7 0.7 16 1-16 10-25 (214)
286 2qor_A Guanylate kinase; phosp 59.7 3.1 0.00011 35.9 1.4 15 1-15 22-36 (204)
287 2bbw_A Adenylate kinase 4, AK4 59.4 3.3 0.00011 36.9 1.6 15 1-15 37-51 (246)
288 1aky_A Adenylate kinase; ATP:A 59.1 3.4 0.00012 36.0 1.6 16 1-16 14-29 (220)
289 1y63_A LMAJ004144AAA protein; 58.9 3.3 0.00011 35.0 1.4 14 1-14 20-33 (184)
290 1gvn_B Zeta; postsegregational 58.6 3.6 0.00012 37.8 1.7 15 1-15 43-57 (287)
291 2ph1_A Nucleotide-binding prot 58.4 3.8 0.00013 36.9 1.9 17 1-17 29-45 (262)
292 2if2_A Dephospho-COA kinase; a 58.3 3.2 0.00011 35.6 1.3 13 1-13 11-23 (204)
293 3a4m_A L-seryl-tRNA(SEC) kinas 58.3 4 0.00014 36.8 1.9 16 1-16 14-29 (260)
294 1htw_A HI0065; nucleotide-bind 58.3 3.1 0.00011 34.5 1.1 15 1-15 43-57 (158)
295 1zak_A Adenylate kinase; ATP:A 58.2 3.6 0.00012 35.9 1.6 16 1-16 15-30 (222)
296 3q9l_A Septum site-determining 58.2 3.9 0.00013 36.5 1.9 17 1-17 13-29 (260)
297 1qf9_A UMP/CMP kinase, protein 57.9 3.7 0.00013 34.6 1.6 15 1-15 16-30 (194)
298 1m7g_A Adenylylsulfate kinase; 57.9 3.9 0.00013 35.4 1.8 16 1-16 35-50 (211)
299 3tr0_A Guanylate kinase, GMP k 57.8 3.3 0.00011 35.5 1.3 14 1-14 17-30 (205)
300 1zd8_A GTP:AMP phosphotransfer 57.8 3.5 0.00012 36.2 1.4 15 1-15 17-31 (227)
301 4fcw_A Chaperone protein CLPB; 57.6 3.6 0.00012 37.9 1.6 16 1-16 57-72 (311)
302 1cp2_A CP2, nitrogenase iron p 57.6 3.7 0.00012 37.1 1.6 17 1-17 11-27 (269)
303 3sr0_A Adenylate kinase; phosp 57.6 6.1 0.00021 34.3 2.9 15 1-15 10-24 (206)
304 3fb4_A Adenylate kinase; psych 57.4 3.8 0.00013 35.5 1.6 15 1-15 10-24 (216)
305 1ak2_A Adenylate kinase isoenz 56.9 3.9 0.00013 36.1 1.6 16 1-16 26-41 (233)
306 2bjv_A PSP operon transcriptio 56.8 3.5 0.00012 37.2 1.3 15 1-15 39-53 (265)
307 1g3q_A MIND ATPase, cell divis 56.8 4.3 0.00015 35.7 1.9 18 1-18 13-30 (237)
308 3co5_A Putative two-component 56.7 1.3 4.4E-05 36.0 -1.6 35 75-109 77-112 (143)
309 1byi_A Dethiobiotin synthase; 56.4 4.4 0.00015 35.3 1.9 18 1-18 12-29 (224)
310 2afh_E Nitrogenase iron protei 56.3 4.4 0.00015 37.1 1.9 17 1-17 12-28 (289)
311 1cke_A CK, MSSA, protein (cyti 56.0 4.2 0.00014 35.5 1.6 15 1-15 15-29 (227)
312 2i3b_A HCR-ntpase, human cance 56.0 4.4 0.00015 34.6 1.7 16 1-16 11-26 (189)
313 3end_A Light-independent proto 55.9 4.5 0.00015 37.4 1.9 17 1-17 51-67 (307)
314 1yrb_A ATP(GTP)binding protein 55.7 4.2 0.00014 36.4 1.6 16 1-16 24-39 (262)
315 3tau_A Guanylate kinase, GMP k 55.6 3.8 0.00013 35.5 1.3 15 1-15 18-32 (208)
316 3ea0_A ATPase, para family; al 55.6 3.6 0.00012 36.4 1.1 18 1-18 15-32 (245)
317 1ukz_A Uridylate kinase; trans 55.5 4.1 0.00014 34.9 1.4 15 1-15 25-39 (203)
318 3asz_A Uridine kinase; cytidin 55.5 4.3 0.00015 35.0 1.6 16 1-16 16-31 (211)
319 2gno_A DNA polymerase III, gam 55.4 7.3 0.00025 36.1 3.3 38 72-109 81-118 (305)
320 4hlc_A DTMP kinase, thymidylat 55.3 4.4 0.00015 35.2 1.6 16 1-16 12-27 (205)
321 3dl0_A Adenylate kinase; phosp 55.1 4.1 0.00014 35.3 1.4 15 1-15 10-24 (216)
322 3zq6_A Putative arsenical pump 55.0 4.7 0.00016 37.8 1.9 18 1-18 24-41 (324)
323 2pez_A Bifunctional 3'-phospho 55.0 4.5 0.00015 33.9 1.6 16 1-16 15-30 (179)
324 3kjh_A CO dehydrogenase/acetyl 54.5 2.9 0.0001 37.1 0.3 17 1-17 10-26 (254)
325 1e4v_A Adenylate kinase; trans 54.5 4.6 0.00016 35.1 1.6 15 1-15 10-24 (214)
326 3be4_A Adenylate kinase; malar 54.4 4.6 0.00016 35.2 1.6 15 1-15 15-29 (217)
327 1um8_A ATP-dependent CLP prote 54.3 4.2 0.00014 38.9 1.4 15 1-15 82-96 (376)
328 2j41_A Guanylate kinase; GMP, 54.0 4.2 0.00014 34.8 1.3 15 1-15 16-30 (207)
329 3a00_A Guanylate kinase, GMP k 54.0 4.4 0.00015 34.3 1.4 16 1-16 11-26 (186)
330 2xb4_A Adenylate kinase; ATP-b 54.0 4.7 0.00016 35.3 1.6 15 1-15 10-24 (223)
331 2ocp_A DGK, deoxyguanosine kin 54.0 4.4 0.00015 36.0 1.4 16 1-16 12-27 (241)
332 3cf2_A TER ATPase, transitiona 54.0 3.5 0.00012 43.8 0.9 17 1-17 521-537 (806)
333 1g8p_A Magnesium-chelatase 38 54.0 4.3 0.00015 38.1 1.4 16 1-16 55-70 (350)
334 1np6_A Molybdopterin-guanine d 53.9 5.3 0.00018 33.6 1.9 17 1-17 16-32 (174)
335 2v54_A DTMP kinase, thymidylat 53.8 4.2 0.00014 34.7 1.3 15 1-15 14-28 (204)
336 1odf_A YGR205W, hypothetical 3 53.7 5.2 0.00018 36.8 1.9 18 1-18 41-58 (290)
337 2oze_A ORF delta'; para, walke 53.5 5.1 0.00017 36.8 1.9 17 1-17 47-63 (298)
338 1hyq_A MIND, cell division inh 53.4 5.3 0.00018 35.8 1.9 17 1-17 13-29 (263)
339 1rz3_A Hypothetical protein rb 53.2 5.6 0.00019 34.2 1.9 16 1-16 32-47 (201)
340 2xj4_A MIPZ; replication, cell 52.9 5.3 0.00018 36.5 1.9 17 1-17 15-31 (286)
341 2w0m_A SSO2452; RECA, SSPF, un 52.9 5.8 0.0002 34.5 2.0 16 1-16 33-48 (235)
342 2ga8_A Hypothetical 39.9 kDa p 52.8 6 0.0002 37.6 2.2 19 1-19 34-52 (359)
343 3pxg_A Negative regulator of g 52.7 5.1 0.00018 39.7 1.8 17 1-17 211-227 (468)
344 1tue_A Replication protein E1; 52.6 4.2 0.00014 35.4 1.0 16 1-16 68-83 (212)
345 3k9g_A PF-32 protein; ssgcid, 52.6 4.7 0.00016 36.3 1.4 16 1-16 38-53 (267)
346 3hws_A ATP-dependent CLP prote 52.3 4.7 0.00016 38.3 1.4 15 1-15 61-75 (363)
347 2jeo_A Uridine-cytidine kinase 52.1 5.2 0.00018 35.6 1.6 15 1-15 35-49 (245)
348 3ake_A Cytidylate kinase; CMP 51.6 5.4 0.00019 34.1 1.6 16 1-16 12-27 (208)
349 2p5t_B PEZT; postsegregational 51.6 4.7 0.00016 36.1 1.2 16 1-16 42-57 (253)
350 1znw_A Guanylate kinase, GMP k 51.2 4.6 0.00016 34.9 1.1 15 1-15 30-44 (207)
351 1wcv_1 SOJ, segregation protei 51.2 4.5 0.00015 36.3 1.0 18 1-18 17-34 (257)
352 4a74_A DNA repair and recombin 51.0 4.7 0.00016 35.2 1.1 14 1-14 35-48 (231)
353 3ney_A 55 kDa erythrocyte memb 51.0 5.4 0.00018 34.4 1.4 16 1-16 29-44 (197)
354 3ug7_A Arsenical pump-driving 50.8 5.6 0.00019 37.7 1.7 17 1-17 36-52 (349)
355 3crm_A TRNA delta(2)-isopenten 50.2 5.4 0.00019 37.3 1.4 15 1-15 15-29 (323)
356 2c9o_A RUVB-like 1; hexameric 50.2 5.6 0.00019 39.3 1.6 16 1-16 73-88 (456)
357 3aez_A Pantothenate kinase; tr 50.1 6.1 0.00021 36.8 1.8 17 1-17 100-116 (312)
358 2ehv_A Hypothetical protein PH 50.1 4.9 0.00017 35.6 1.1 13 1-13 40-52 (251)
359 2cvh_A DNA repair and recombin 50.0 5 0.00017 34.7 1.1 13 1-13 30-42 (220)
360 3b85_A Phosphate starvation-in 49.9 5.9 0.0002 34.4 1.6 14 1-14 32-45 (208)
361 1ex7_A Guanylate kinase; subst 49.9 5.7 0.0002 33.9 1.4 16 1-16 11-26 (186)
362 2px0_A Flagellar biosynthesis 49.8 6.2 0.00021 36.4 1.8 17 1-17 115-131 (296)
363 1a7j_A Phosphoribulokinase; tr 49.2 6.5 0.00022 36.2 1.8 16 1-16 15-30 (290)
364 2orw_A Thymidine kinase; TMTK, 49.2 7 0.00024 33.1 1.9 40 67-109 70-109 (184)
365 2r44_A Uncharacterized protein 49.1 4.4 0.00015 37.9 0.6 16 1-16 56-71 (331)
366 3fkq_A NTRC-like two-domain pr 48.9 7 0.00024 37.4 2.0 18 1-18 154-171 (373)
367 1lvg_A Guanylate kinase, GMP k 48.7 5.7 0.0002 34.1 1.3 15 1-15 14-28 (198)
368 3tlx_A Adenylate kinase 2; str 48.7 6.3 0.00022 35.1 1.6 15 1-15 39-53 (243)
369 1uf9_A TT1252 protein; P-loop, 48.6 5.7 0.0002 33.8 1.3 14 1-14 18-31 (203)
370 3v9p_A DTMP kinase, thymidylat 48.6 7.3 0.00025 34.4 2.0 18 1-18 35-52 (227)
371 2qt1_A Nicotinamide riboside k 48.2 5.5 0.00019 34.2 1.1 15 1-15 31-45 (207)
372 1cr0_A DNA primase/helicase; R 47.9 7.2 0.00025 35.8 1.9 18 1-18 45-62 (296)
373 1z6g_A Guanylate kinase; struc 47.8 5.7 0.00019 34.7 1.1 15 1-15 33-47 (218)
374 1p6x_A Thymidine kinase; P-loo 47.5 4.7 0.00016 37.9 0.6 17 1-17 17-33 (334)
375 3b9q_A Chloroplast SRP recepto 47.4 7.4 0.00025 36.0 1.9 17 1-17 110-126 (302)
376 1e2k_A Thymidine kinase; trans 47.0 4 0.00014 38.4 -0.0 17 1-17 14-30 (331)
377 3d3q_A TRNA delta(2)-isopenten 46.8 6.6 0.00023 37.0 1.4 16 1-16 17-32 (340)
378 4e22_A Cytidylate kinase; P-lo 46.5 6.8 0.00023 35.1 1.4 16 1-16 37-52 (252)
379 3foz_A TRNA delta(2)-isopenten 46.4 6.8 0.00023 36.4 1.4 15 1-15 20-34 (316)
380 4eaq_A DTMP kinase, thymidylat 46.4 7.3 0.00025 34.4 1.6 16 1-16 36-51 (229)
381 1jjv_A Dephospho-COA kinase; P 46.2 6.2 0.00021 33.9 1.1 13 1-13 12-24 (206)
382 3nwj_A ATSK2; P loop, shikimat 46.2 7.4 0.00025 34.9 1.6 16 1-16 58-73 (250)
383 1oix_A RAS-related protein RAB 46.1 6.6 0.00023 33.2 1.3 13 1-13 39-51 (191)
384 3ld9_A DTMP kinase, thymidylat 46.1 8.4 0.00029 33.9 1.9 17 1-17 31-47 (223)
385 1uj2_A Uridine-cytidine kinase 46.0 7 0.00024 34.9 1.4 16 1-16 32-47 (252)
386 3lnc_A Guanylate kinase, GMP k 45.9 6.1 0.00021 34.7 1.0 15 1-15 37-52 (231)
387 1of1_A Thymidine kinase; trans 45.9 5.1 0.00017 38.3 0.5 17 1-17 59-75 (376)
388 2v3c_C SRP54, signal recogniti 45.7 9.6 0.00033 37.3 2.5 17 1-17 109-125 (432)
389 1s96_A Guanylate kinase, GMP k 45.5 7.2 0.00025 34.2 1.4 16 1-16 26-41 (219)
390 1vma_A Cell division protein F 45.4 8.3 0.00028 35.8 1.9 17 1-17 114-130 (306)
391 2qmh_A HPR kinase/phosphorylas 45.3 5.6 0.00019 34.4 0.6 14 1-14 44-57 (205)
392 1n0w_A DNA repair protein RAD5 45.0 6.6 0.00022 34.5 1.1 14 1-14 34-47 (243)
393 2dhr_A FTSH; AAA+ protein, hex 45.0 7.1 0.00024 39.0 1.4 15 1-15 74-88 (499)
394 4edh_A DTMP kinase, thymidylat 44.9 7.9 0.00027 33.8 1.6 17 1-17 16-32 (213)
395 3fwy_A Light-independent proto 44.9 8.5 0.00029 35.8 1.9 17 1-17 58-74 (314)
396 1ltq_A Polynucleotide kinase; 44.7 7.4 0.00025 35.7 1.4 14 1-14 12-25 (301)
397 3m6a_A ATP-dependent protease 44.6 7.5 0.00026 39.3 1.6 17 1-17 118-134 (543)
398 3a8t_A Adenylate isopentenyltr 44.2 5.4 0.00019 37.6 0.4 16 1-16 50-65 (339)
399 2onk_A Molybdate/tungstate ABC 44.1 6.9 0.00024 34.8 1.1 13 1-13 34-46 (240)
400 2woo_A ATPase GET3; tail-ancho 44.1 7.6 0.00026 36.4 1.4 17 1-17 29-45 (329)
401 2hf9_A Probable hydrogenase ni 44.0 7.8 0.00027 33.6 1.4 15 1-15 48-62 (226)
402 3r20_A Cytidylate kinase; stru 43.8 8.5 0.00029 34.1 1.6 16 1-16 19-34 (233)
403 3pg5_A Uncharacterized protein 43.8 6.9 0.00024 37.3 1.1 17 1-17 12-28 (361)
404 2f9l_A RAB11B, member RAS onco 43.7 7.6 0.00026 33.0 1.3 13 1-13 15-27 (199)
405 1vht_A Dephospho-COA kinase; s 43.6 7.6 0.00026 33.6 1.3 13 1-13 14-26 (218)
406 1rj9_A FTSY, signal recognitio 43.5 8.9 0.0003 35.5 1.8 17 1-17 112-128 (304)
407 4tmk_A Protein (thymidylate ki 43.4 9.6 0.00033 33.2 1.9 17 1-17 13-29 (213)
408 2dyk_A GTP-binding protein; GT 43.3 7.9 0.00027 31.2 1.3 14 1-14 11-24 (161)
409 2ce2_X GTPase HRAS; signaling 43.3 7.9 0.00027 31.2 1.3 13 1-13 13-25 (166)
410 2wsm_A Hydrogenase expression/ 43.2 8.2 0.00028 33.3 1.4 15 1-15 40-54 (221)
411 2pcj_A ABC transporter, lipopr 43.1 6.1 0.00021 34.7 0.6 13 1-13 40-52 (224)
412 1zu4_A FTSY; GTPase, signal re 42.9 9.5 0.00033 35.6 1.9 17 1-17 115-131 (320)
413 2dr3_A UPF0273 protein PH0284; 42.5 10 0.00034 33.3 1.9 16 1-16 33-48 (247)
414 3iqw_A Tail-anchored protein t 42.5 7.5 0.00026 36.6 1.1 17 1-17 26-42 (334)
415 2grj_A Dephospho-COA kinase; T 42.5 8.7 0.0003 32.8 1.4 14 1-14 22-35 (192)
416 3e70_C DPA, signal recognition 42.4 9.8 0.00034 35.7 1.9 17 1-17 139-155 (328)
417 1j8m_F SRP54, signal recogniti 42.3 12 0.0004 34.6 2.4 17 1-17 108-124 (297)
418 1nlf_A Regulatory protein REPA 42.1 9.6 0.00033 34.6 1.8 15 1-15 40-54 (279)
419 3exa_A TRNA delta(2)-isopenten 42.1 8.2 0.00028 35.9 1.3 15 1-15 13-27 (322)
420 1g41_A Heat shock protein HSLU 42.0 8.5 0.00029 37.7 1.4 16 1-16 60-75 (444)
421 1ojl_A Transcriptional regulat 42.0 8.6 0.00029 35.6 1.4 15 1-15 35-49 (304)
422 2og2_A Putative signal recogni 42.0 10 0.00034 36.1 1.9 17 1-17 167-183 (359)
423 2d2e_A SUFC protein; ABC-ATPas 41.9 7.8 0.00027 34.7 1.1 13 1-13 39-51 (250)
424 3kta_A Chromosome segregation 41.8 8 0.00028 32.3 1.1 14 1-14 36-49 (182)
425 1ls1_A Signal recognition part 41.8 10 0.00034 35.0 1.8 17 1-17 108-124 (295)
426 3lv8_A DTMP kinase, thymidylat 41.7 11 0.00036 33.6 1.9 17 1-17 37-53 (236)
427 3io3_A DEHA2D07832P; chaperone 41.4 10 0.00034 36.0 1.8 16 1-16 28-43 (348)
428 2zu0_C Probable ATP-dependent 41.2 8.2 0.00028 35.0 1.1 13 1-13 56-68 (267)
429 1p5z_B DCK, deoxycytidine kina 41.1 3.9 0.00013 36.9 -1.1 15 1-15 34-48 (263)
430 2b8t_A Thymidine kinase; deoxy 41.0 11 0.00038 33.1 1.9 48 59-109 74-122 (223)
431 2f1r_A Molybdopterin-guanine d 40.8 6.4 0.00022 33.0 0.3 17 1-17 12-28 (171)
432 1g8f_A Sulfate adenylyltransfe 40.7 9.7 0.00033 38.1 1.6 17 1-17 405-421 (511)
433 3con_A GTPase NRAS; structural 40.7 9.1 0.00031 32.0 1.3 13 1-13 31-43 (190)
434 1sq5_A Pantothenate kinase; P- 40.2 10 0.00035 35.1 1.6 16 1-16 90-105 (308)
435 2woj_A ATPase GET3; tail-ancho 40.2 11 0.00036 35.9 1.8 16 1-16 28-43 (354)
436 3kl4_A SRP54, signal recogniti 40.2 11 0.00037 36.9 1.9 17 1-17 107-123 (433)
437 3ez2_A Plasmid partition prote 40.1 10 0.00036 36.4 1.7 16 1-16 119-134 (398)
438 3tqc_A Pantothenate kinase; bi 39.9 9.8 0.00034 35.5 1.4 16 1-16 102-117 (321)
439 3eph_A TRNA isopentenyltransfe 39.9 10 0.00035 36.6 1.6 16 1-16 12-27 (409)
440 2zej_A Dardarin, leucine-rich 39.8 8.5 0.00029 32.2 0.9 13 1-13 12-24 (184)
441 2xxa_A Signal recognition part 39.7 11 0.00038 36.8 1.9 18 1-18 110-127 (433)
442 1z2a_A RAS-related protein RAB 39.7 9.7 0.00033 30.8 1.3 13 1-13 15-27 (168)
443 1ji0_A ABC transporter; ATP bi 39.5 7.6 0.00026 34.6 0.6 13 1-13 42-54 (240)
444 1sgw_A Putative ABC transporte 39.4 7.6 0.00026 33.9 0.6 13 1-13 45-57 (214)
445 1b0u_A Histidine permease; ABC 39.2 7.7 0.00026 35.1 0.6 13 1-13 42-54 (262)
446 2cbz_A Multidrug resistance-as 39.2 7.7 0.00026 34.4 0.6 14 1-14 41-54 (237)
447 1g6h_A High-affinity branched- 39.1 7.7 0.00026 34.9 0.6 13 1-13 43-55 (257)
448 3nbx_X ATPase RAVA; AAA+ ATPas 39.0 6.4 0.00022 39.4 -0.0 15 1-15 51-65 (500)
449 2olj_A Amino acid ABC transpor 39.0 7.8 0.00027 35.1 0.6 13 1-13 60-72 (263)
450 3pxi_A Negative regulator of g 38.8 11 0.00038 39.8 1.8 16 1-16 211-226 (758)
451 3tif_A Uncharacterized ABC tra 38.7 7.9 0.00027 34.3 0.6 13 1-13 41-53 (235)
452 1osn_A Thymidine kinase, VZV-T 38.3 9.9 0.00034 35.8 1.2 17 1-17 22-39 (341)
453 2wjg_A FEOB, ferrous iron tran 38.2 9.8 0.00034 31.7 1.1 13 1-13 17-29 (188)
454 1u8z_A RAS-related protein RAL 38.0 11 0.00037 30.5 1.3 13 1-13 14-26 (168)
455 4g1u_C Hemin import ATP-bindin 37.9 8.3 0.00028 34.9 0.6 13 1-13 47-59 (266)
456 3bh0_A DNAB-like replicative h 37.6 12 0.0004 34.8 1.6 17 1-17 78-94 (315)
457 1vpl_A ABC transporter, ATP-bi 37.5 8.5 0.00029 34.7 0.6 14 1-14 51-64 (256)
458 3dm5_A SRP54, signal recogniti 37.5 12 0.00039 36.8 1.6 17 1-17 110-126 (443)
459 2qi9_C Vitamin B12 import ATP- 37.5 8.5 0.00029 34.5 0.6 14 1-14 36-49 (249)
460 2vp4_A Deoxynucleoside kinase; 37.5 6.2 0.00021 34.8 -0.4 14 1-14 30-43 (230)
461 2qnr_A Septin-2, protein NEDD5 37.4 10 0.00035 35.0 1.1 13 1-13 28-40 (301)
462 2pze_A Cystic fibrosis transme 37.4 8.6 0.00029 33.9 0.6 14 1-14 44-57 (229)
463 3sop_A Neuronal-specific septi 37.2 11 0.00037 34.2 1.2 16 1-16 12-27 (270)
464 2wji_A Ferrous iron transport 37.0 10 0.00034 31.0 0.9 13 1-13 13-25 (165)
465 1r8s_A ADP-ribosylation factor 37.0 12 0.00041 30.2 1.4 13 1-13 10-22 (164)
466 3gfo_A Cobalt import ATP-bindi 36.9 8.8 0.0003 35.0 0.6 14 1-14 44-57 (275)
467 2ihy_A ABC transporter, ATP-bi 36.8 8.8 0.0003 35.1 0.6 13 1-13 57-69 (279)
468 3tmk_A Thymidylate kinase; pho 36.7 13 0.00044 32.5 1.6 17 1-17 15-31 (216)
469 2yz2_A Putative ABC transporte 36.7 8.9 0.0003 34.7 0.6 13 1-13 43-55 (266)
470 1mv5_A LMRA, multidrug resista 36.6 8.9 0.00031 34.1 0.6 14 1-14 38-51 (243)
471 2zr9_A Protein RECA, recombina 36.6 14 0.00047 35.0 1.9 17 1-17 71-87 (349)
472 1c1y_A RAS-related protein RAP 36.5 12 0.0004 30.3 1.3 13 1-13 13-25 (167)
473 1q3t_A Cytidylate kinase; nucl 36.3 13 0.00045 32.7 1.6 15 1-15 26-40 (236)
474 2ghi_A Transport protein; mult 36.3 9.1 0.00031 34.5 0.6 14 1-14 56-69 (260)
475 2ff7_A Alpha-hemolysin translo 36.2 9.1 0.00031 34.2 0.6 14 1-14 45-58 (247)
476 2fn4_A P23, RAS-related protei 36.2 12 0.0004 30.7 1.3 14 1-14 19-32 (181)
477 3bfv_A CAPA1, CAPB2, membrane 36.1 14 0.00049 33.4 1.9 17 1-17 93-109 (271)
478 2yhs_A FTSY, cell division pro 35.9 14 0.00048 36.7 1.9 17 1-17 303-319 (503)
479 2ixe_A Antigen peptide transpo 35.6 9.5 0.00032 34.6 0.6 14 1-14 55-68 (271)
480 2eyu_A Twitching motility prot 35.5 16 0.00053 33.0 2.0 42 63-109 88-129 (261)
481 3t1o_A Gliding protein MGLA; G 35.5 12 0.00042 31.2 1.3 13 1-13 24-36 (198)
482 1z08_A RAS-related protein RAB 35.3 12 0.00043 30.2 1.3 13 1-13 16-28 (170)
483 3ez9_A Para; DNA binding, wing 35.3 12 0.00041 36.1 1.3 16 1-16 122-137 (403)
484 2nq2_C Hypothetical ABC transp 35.3 9.6 0.00033 34.2 0.5 14 1-14 41-54 (253)
485 2ged_A SR-beta, signal recogni 35.2 12 0.00043 31.2 1.3 14 1-14 58-71 (193)
486 1m7b_A RND3/RHOE small GTP-bin 35.1 13 0.00043 31.0 1.3 13 1-13 17-29 (184)
487 1kao_A RAP2A; GTP-binding prot 35.1 13 0.00043 29.9 1.3 13 1-13 13-25 (167)
488 1ek0_A Protein (GTP-binding pr 35.0 13 0.00043 30.1 1.3 13 1-13 13-25 (170)
489 1r2q_A RAS-related protein RAB 34.9 13 0.00044 30.1 1.3 13 1-13 16-28 (170)
490 3tqf_A HPR(Ser) kinase; transf 34.9 11 0.00039 31.7 0.9 14 1-14 26-39 (181)
491 2f6r_A COA synthase, bifunctio 34.8 12 0.0004 34.2 1.1 13 1-13 85-97 (281)
492 2nzj_A GTP-binding protein REM 34.8 12 0.00041 30.5 1.1 12 1-12 14-25 (175)
493 1z0j_A RAB-22, RAS-related pro 34.8 13 0.00044 30.1 1.3 13 1-13 16-28 (170)
494 3q72_A GTP-binding protein RAD 34.7 11 0.00039 30.4 0.9 12 1-12 12-23 (166)
495 3k1j_A LON protease, ATP-depen 34.7 12 0.00041 38.4 1.3 15 1-15 70-84 (604)
496 3cio_A ETK, tyrosine-protein k 34.7 15 0.00052 33.8 1.9 17 1-17 115-131 (299)
497 1u94_A RECA protein, recombina 34.5 15 0.00053 34.8 1.9 17 1-17 73-89 (356)
498 1z0f_A RAB14, member RAS oncog 34.3 13 0.00045 30.3 1.3 13 1-13 25-37 (179)
499 2erx_A GTP-binding protein DI- 34.2 11 0.00038 30.6 0.7 13 1-13 13-25 (172)
500 2zts_A Putative uncharacterize 34.1 14 0.00047 32.4 1.4 14 1-14 40-53 (251)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.7e-37 Score=317.96 Aligned_cols=250 Identities=16% Similarity=0.214 Sum_probs=184.8
Q ss_pred CCccchHHHHHHH----HHHHhhhhHHHHHHHHHH---HhhhHHHHHHHHHHHhhcc----CCCCCCCcHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEM----LVNKLASEAILLFSLQEQ---IQSDLKKWKKILVFIATAD----QPVNGTDELGLLQEKLKNQ 69 (471)
Q Consensus 1 ~iGKTtLA~~v~~----~~~~~~~~~~~~~~lq~~---~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~ 69 (471)
||||||||++||+ +++..|+... |+.+... -..+++ ..+...+.... ....+..+.+++...+++.
T Consensus 162 GvGKTtLA~~v~~~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~--~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 238 (549)
T 2a5y_B 162 GSGKSVIASQALSKSDQLIGINYDSIV-WLKDSGTAPKSTFDLF--TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNA 238 (549)
T ss_dssp TSSHHHHHHHHHHHCSSTBTTTBSEEE-EEECCCCSTTHHHHHH--HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhHHHhccCCcEE-EEEECCCCCCCHHHHH--HHHHHHHhcCcccccccccccccHHHHHHHHHHH
Confidence 8999999999997 5777785533 3344321 112222 23322332221 1111234567788999999
Q ss_pred cCCC-cEEEEEecCCCCCcchhhhccccccCCCCCcEEEee-----------------------CchhHHHHHhhhcCCC
Q 047511 70 MSRK-KFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT-----------------------KDDCLQVFTQHCLGMR 125 (471)
Q Consensus 70 L~~k-r~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT-----------------------~~ea~~Lf~~~af~~~ 125 (471)
|++| |+||||||||+.+...|.. .+||+|||| ++|||+||+++||+..
T Consensus 239 L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 310 (549)
T 2a5y_B 239 LIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP 310 (549)
T ss_dssp HTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC
T ss_pred HcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC
Confidence 9996 9999999999862222332 279999999 6899999999998654
Q ss_pred CCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCC-----------CCcCCchhHHhhhccCCChhhHHHHh----
Q 047511 126 DFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDP-----------LVSCDIIPALRLSYHYLSPNLKRCFA---- 190 (471)
Q Consensus 126 ~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~-----------~~~~~i~~~l~~sy~~L~~~~k~~fl---- 190 (471)
..+.+++++++|+++|+|+||||+++|+.|+.+... ....++..++.+||+.||++.|.||+
T Consensus 311 ---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~ 387 (549)
T 2a5y_B 311 ---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSD 387 (549)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCH
T ss_pred ---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccch
Confidence 247888999999999999999999999998776321 13456888999999999999999999
Q ss_pred -------HhccCCCCccccHHHHHHHHHHC--CCCCCCCchhHHHHHHHHHHHHHHhcCcccccCC-CCCccchhhhHHH
Q 047511 191 -------YCSLFPKNYEFHEEEVTLLWMAE--GFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSSS-DPCRFLMHDLIND 260 (471)
Q Consensus 191 -------~~~~f~~~~~i~~~~l~~~w~~~--g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mhdlv~~ 260 (471)
|||+||+++.|+ ++.|+++ ||+.........++.++ ++++|+++||++.... ...+|+|||++|+
T Consensus 388 ~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~ 462 (549)
T 2a5y_B 388 EDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHM 462 (549)
T ss_dssp HHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHH
T ss_pred hhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHH
Confidence 999999999998 8899999 99887543455677777 9999999999998653 4567999999999
Q ss_pred HHHHhcccc
Q 047511 261 LAQWAGDLD 269 (471)
Q Consensus 261 ~a~~~~~~~ 269 (471)
+|+++...+
T Consensus 463 ~a~~~~~~~ 471 (549)
T 2a5y_B 463 FLKHVVDAQ 471 (549)
T ss_dssp HHHTTSCTH
T ss_pred HHHHHHHHH
Confidence 999886543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=6e-30 Score=290.94 Aligned_cols=240 Identities=21% Similarity=0.299 Sum_probs=182.8
Q ss_pred CCccchHHHHHHHHH---HHhhhhHHHHHHHHHHHhhhHH-HHHHHHHHHhhccC-CCCCCCcHHHHHHHHHHHcCCC--
Q 047511 1 MIGETNLSVSIEMLV---NKLASEAILLFSLQEQIQSDLK-KWKKILVFIATADQ-PVNGTDELGLLQEKLKNQMSRK-- 73 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~---~~~~~~~~~~~~lq~~~l~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~k-- 73 (471)
||||||||+++|++. ...|....+++.+......++. ....+...+..... ......+.+++...++..|.+|
T Consensus 157 G~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 236 (1249)
T 3sfz_A 157 GCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHP 236 (1249)
T ss_dssp TSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSC
T ss_pred CCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCC
Confidence 899999999999874 4446666666655331111111 11122222222221 2234567889999999999887
Q ss_pred cEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCCCCC
Q 047511 74 KFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRDFSM 129 (471)
Q Consensus 74 r~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~~~~ 129 (471)
|+||||||||+. .+|+.+ ++||||||| ++||++||+..++..
T Consensus 237 ~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----- 302 (1249)
T 3sfz_A 237 RSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK----- 302 (1249)
T ss_dssp SCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----
T ss_pred CEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----
Confidence 999999999875 666653 689999999 578999999998543
Q ss_pred CchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCC---------------------CCcCCchhHHhhhccCCChhhHHH
Q 047511 130 QQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDP---------------------LVSCDIIPALRLSYHYLSPNLKRC 188 (471)
Q Consensus 130 ~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~---------------------~~~~~i~~~l~~sy~~L~~~~k~~ 188 (471)
.+.+.+.+++|+++|+|+||||+++|+.|+.++.. .....+..++.+||+.|++++|.|
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ 382 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDY 382 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHH
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHH
Confidence 23445679999999999999999999999876532 011357889999999999999999
Q ss_pred HhHhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccC-CCCCccchhhhHHHHHHHhc
Q 047511 189 FAYCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSS-SDPCRFLMHDLINDLAQWAG 266 (471)
Q Consensus 189 fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~mhdlv~~~a~~~~ 266 (471)
|++||+||+++.|++..++..|.++ ++.++.++++|+++||++... +...+|+||+++|++++...
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred HHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhh
Confidence 9999999999999999999999543 356788999999999999754 33446999999999998873
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1.7e-29 Score=267.68 Aligned_cols=229 Identities=16% Similarity=0.238 Sum_probs=169.1
Q ss_pred CCccchHHHHHHHH--HHHhhhhHHHHHHHHHHH-hhhHHHHHHHHHHHhhccCC----C----CCCCcHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEML--VNKLASEAILLFSLQEQI-QSDLKKWKKILVFIATADQP----V----NGTDELGLLQEKLKNQ 69 (471)
Q Consensus 1 ~iGKTtLA~~v~~~--~~~~~~~~~~~~~lq~~~-l~~l~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~l~~~ 69 (471)
||||||||+++|++ ++..|+.+++|+.+.... ...++ ..+...+...... . ..+.+.+++...+++.
T Consensus 160 GIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL--~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp TSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHH--HHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHH--HHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 79999999999974 788888766666653211 11111 1111112221110 0 1123456677788886
Q ss_pred c---CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee----------------------------CchhHHHHH
Q 047511 70 M---SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT----------------------------KDDCLQVFT 118 (471)
Q Consensus 70 L---~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT----------------------------~~ea~~Lf~ 118 (471)
| .+||+||||||||+. ++|+.+ ++||||||| .+|||+||+
T Consensus 238 L~~l~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~ 308 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHH
Confidence 6 789999999999885 788754 279999999 258999999
Q ss_pred hhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCC------CCcCCchhHHhhhccCCChhh-HHHHhH
Q 047511 119 QHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDP------LVSCDIIPALRLSYHYLSPNL-KRCFAY 191 (471)
Q Consensus 119 ~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~------~~~~~i~~~l~~sy~~L~~~~-k~~fl~ 191 (471)
++. +.. ..+++.+| |+|+||||+++|+.|+++... .....+..+++.||+.||+++ |+||++
T Consensus 309 ~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~ 377 (1221)
T 1vt4_I 309 KYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377 (1221)
T ss_dssp HHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred HHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 983 322 12334444 999999999999999988532 123568899999999999999 999999
Q ss_pred hccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccCCCCCccchhhhHHHHHH
Q 047511 192 CSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSSSDPCRFLMHDLINDLAQ 263 (471)
Q Consensus 192 ~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mhdlv~~~a~ 263 (471)
||+||+++.|+.+.++.+|.++| ++.++.++++|+++||++.. +...+|+|||++++++.
T Consensus 378 LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 378 LSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp TTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 99999999999999999998776 13577899999999999975 34568999999999653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=247.47 Aligned_cols=236 Identities=20% Similarity=0.293 Sum_probs=175.4
Q ss_pred CCccchHHHHHHHHH---HHhhhhHHHHHHHHHH----HhhhHHHHHHHHHHHhh-ccCCCCCCCcHHHHHHHHHHHcCC
Q 047511 1 MIGETNLSVSIEMLV---NKLASEAILLFSLQEQ----IQSDLKKWKKILVFIAT-ADQPVNGTDELGLLQEKLKNQMSR 72 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~---~~~~~~~~~~~~lq~~----~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 72 (471)
||||||||+++|++. +..|+...+|+.+... ++..+. .+...+.. .........+.+.+...+++.+.+
T Consensus 157 GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 157 GCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ---NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp TSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH---HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH---HHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 899999999999864 5667555555554321 122221 11111111 011123456778888889988876
Q ss_pred --CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCC
Q 047511 73 --KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRD 126 (471)
Q Consensus 73 --kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~ 126 (471)
+++||||||||+. .+++. .++||+|||| .+||++||...++...
T Consensus 234 ~~~~~LLVLDdv~~~--~~l~~-------l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~- 303 (591)
T 1z6t_A 234 KHPRSLLILDDVWDS--WVLKA-------FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK- 303 (591)
T ss_dssp TCTTCEEEEEEECCH--HHHHT-------TCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG-
T ss_pred CCCCeEEEEeCCCCH--HHHHH-------hcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc-
Confidence 7999999999864 45443 3678999999 5789999999986422
Q ss_pred CCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCC---------------------CCcCCchhHHhhhccCCChhh
Q 047511 127 FSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDP---------------------LVSCDIIPALRLSYHYLSPNL 185 (471)
Q Consensus 127 ~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~---------------------~~~~~i~~~l~~sy~~L~~~~ 185 (471)
....+.+.+|+++|+|+||||+.+|+.++.++.. .....+..++..||+.||++.
T Consensus 304 ----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~ 379 (591)
T 1z6t_A 304 ----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI 379 (591)
T ss_dssp ----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTT
T ss_pred ----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHH
Confidence 2234678999999999999999999999877531 012357789999999999999
Q ss_pred HHHHhHhccCCCCccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccC-CCCCccchhhhHHHHHHH
Q 047511 186 KRCFAYCSLFPKNYEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSS-SDPCRFLMHDLINDLAQW 264 (471)
Q Consensus 186 k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~mhdlv~~~a~~ 264 (471)
|.||+++|+||++..|+...+...|.++ .+.+..++++|+++||++... +...+|+||++++++++.
T Consensus 380 ~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 380 KDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTE 447 (591)
T ss_dssp HHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHH
T ss_pred HHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHh
Confidence 9999999999999999999999999432 235678899999999998643 334579999999999987
Q ss_pred h
Q 047511 265 A 265 (471)
Q Consensus 265 ~ 265 (471)
.
T Consensus 448 ~ 448 (591)
T 1z6t_A 448 K 448 (591)
T ss_dssp H
T ss_pred h
Confidence 6
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.9e-18 Score=167.66 Aligned_cols=178 Identities=20% Similarity=0.290 Sum_probs=138.5
Q ss_pred ccccCCCcceee-------eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhc------
Q 047511 276 PFFEFENLQTFL-------PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGN------ 342 (471)
Q Consensus 276 ~~~~~~~l~~l~-------~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~------ 342 (471)
.+.++++|+.|. .+|..++++++|++|++++|.++.+|..++++++|++|++++|+..+.+|..++.
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 355677777764 4578888999999999999999999999999999999999998888999887765
Q ss_pred ---cccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcC
Q 047511 343 ---LLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLN 418 (471)
Q Consensus 343 ---l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~ 418 (471)
+++|++|++++| .+..+|..++++++|++|++..+... ..+..++ +.+|+ .|.+.+ ++..+..|..++
T Consensus 179 ~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~-~L~Ls~----n~~~~~~p~~~~ 250 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLE-ELDLRG----CTALRNYPPIFG 250 (328)
T ss_dssp EEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCC-EEECTT----CTTCCBCCCCTT
T ss_pred hccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCC-EEECcC----CcchhhhHHHhc
Confidence 889999999998 67789988999999999987665543 2344566 77777 777766 334455677788
Q ss_pred CcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC-CCC
Q 047511 419 GKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT-KCR 470 (471)
Q Consensus 419 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~P 470 (471)
++++|+.|+|++|. ....++..+..+++|++|+|++|.+. .+|
T Consensus 251 ~l~~L~~L~L~~n~---------~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 251 GRAPLKRLILKDCS---------NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CCCCCCEEECTTCT---------TCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCCCEEECCCCC---------chhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 88999999998665 33456667777888999999887654 355
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=6.9e-17 Score=156.60 Aligned_cols=165 Identities=20% Similarity=0.274 Sum_probs=137.9
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccC-
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGK- 366 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~- 366 (471)
.+|+.+.++++|++|++++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++++|..++.+|..++.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 4688899999999999999999999999999999999999996 56699999999999999999998889999988765
Q ss_pred --------CCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCC
Q 047511 367 --------LACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDS 437 (471)
Q Consensus 367 --------l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 437 (471)
+++|++|++..+... ..+..++ +.+|+ .|.+.+.. +. ..|..+..+++|++|++++|.
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~-~L~L~~N~----l~-~l~~~l~~l~~L~~L~Ls~n~----- 240 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLK-SLKIRNSP----LS-ALGPAIHHLPKLEELDLRGCT----- 240 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCC-EEEEESSC----CC-CCCGGGGGCTTCCEEECTTCT-----
T ss_pred cchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCC-EEEccCCC----CC-cCchhhccCCCCCEEECcCCc-----
Confidence 999999998877654 3445677 88888 88887632 33 245568999999999998765
Q ss_pred CCcchHHHhhccCCCCCCcceEEEEeecCC-CCC
Q 047511 438 REPEIETHVLDMLKPHQNLERFCISGYGGT-KCR 470 (471)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~P 470 (471)
....++..+..+++|++|+|++|.+. .+|
T Consensus 241 ----~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 241 ----ALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ----TCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred ----chhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 34456778889999999999997654 344
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=1.7e-16 Score=152.77 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=102.4
Q ss_pred ccccCCCcceee---------eCCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhcccc
Q 047511 276 PFFEFENLQTFL---------PLPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~---------~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 345 (471)
.+.++++|+.|. .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|...+.+|..+..+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 455556666553 24666777777777777777776 66777777777777777775544567777777777
Q ss_pred CCeeecCCCCCCccCcccccCCC-CCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhh-------
Q 047511 346 LHHLDNSDVDASEEIPKGMGKLA-CLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQ------- 416 (471)
Q Consensus 346 L~~L~l~~~~~~~~lP~~~~~l~-~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~------- 416 (471)
|++|++++|...+.+|..++.++ +|++|++..+... +..+..+. +. |+ .|.+.+ +.+.+..+..
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~-L~-~L~Ls~----N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANLN-LA-FVDLSR----NMLEGDASVLFGSDKNT 223 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGCC-CS-EEECCS----SEEEECCGGGCCTTSCC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhCCc-cc-EEECcC----CcccCcCCHHHhcCCCC
Confidence 77777777744446777777776 7777765443322 12222333 22 44 444333 1222223333
Q ss_pred ----------------cCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 417 ----------------LNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 417 ----------------l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+..+++|++|++++|. +...+|..+..+++|++|+|++|.++
T Consensus 224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR---------IYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SEEECCSSEECCBGGGCCCCTTCCEEECCSSC---------CEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CEEECCCCceeeecCcccccCCCCEEECcCCc---------ccCcCChHHhcCcCCCEEECcCCccc
Confidence 4444555555554433 23345555666667777777777665
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=2.5e-16 Score=151.67 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=96.7
Q ss_pred CCCcCCCCcceEEEecCCCCC-cCCccccCCC-CCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQ-ILPESVNTLY-NLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
|..+.++++|++|++++|.++ .+|..++.+. +|+.|++++|...+.+|..+..++ |++|++++|...+..|..++.+
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC
Confidence 444555555555555555555 4555555554 555555555444445555555554 5555555553333445556666
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHh
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHV 446 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 446 (471)
++|++|++..+... ..+..+. +.+|+ .|.+.+ +.+.+..|..+..+++|+.|+|++|. ..+.+
T Consensus 221 ~~L~~L~L~~N~l~--~~~~~~~~l~~L~-~L~Ls~----N~l~~~~p~~l~~l~~L~~L~Ls~N~---------l~~~i 284 (313)
T 1ogq_A 221 KNTQKIHLAKNSLA--FDLGKVGLSKNLN-GLDLRN----NRIYGTLPQGLTQLKFLHSLNVSFNN---------LCGEI 284 (313)
T ss_dssp SCCSEEECCSSEEC--CBGGGCCCCTTCC-EEECCS----SCCEECCCGGGGGCTTCCEEECCSSE---------EEEEC
T ss_pred CCCCEEECCCCcee--eecCcccccCCCC-EEECcC----CcccCcCChHHhcCcCCCEEECcCCc---------ccccC
Confidence 66666665443322 1233355 66666 666665 44555678889999999999999775 44445
Q ss_pred hccCCCCCCcceEEEEeecC
Q 047511 447 LDMLKPHQNLERFCISGYGG 466 (471)
Q Consensus 447 ~~~l~~~~~L~~L~L~~~~~ 466 (471)
|+. ..+++|+.|++++|+.
T Consensus 285 p~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSE
T ss_pred CCC-ccccccChHHhcCCCC
Confidence 554 6788999999999873
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=8.3e-16 Score=166.04 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=70.6
Q ss_pred ccccCCCcceee--------eCCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFL--------PLPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~--------~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+..+++|+.|. .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|...+.+|..++.+++|
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 455666777664 34666667777777777777777 567777777777777777766666777777777777
Q ss_pred CeeecCCCCCCccCcccccCCCCCcccCCee
Q 047511 347 HHLDNSDVDASEEIPKGMGKLACLLTLCSFV 377 (471)
Q Consensus 347 ~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~ 377 (471)
++|++++|...+.+|..++.+++|++|++..
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 7777777755556777777777777765543
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.3e-16 Score=169.36 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCCCcCCCCcceEEEecCCCCCc------------------CCcccc--CCCCCcEEEccCCCcccccchhhhccccCCe
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQI------------------LPESVN--TLYNLRTLMLQKCNQLAKMCSDMGNLLKLHH 348 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 348 (471)
+|..+++|++|++|+|++|.++. +|+.++ ++++|++|++++|+..+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44555555555555555555554 555555 5555555555555555555555555555555
Q ss_pred eecCCCCCCc--cCcccccCCC-------CCcccCCeee
Q 047511 349 LDNSDVDASE--EIPKGMGKLA-------CLLTLCSFVV 378 (471)
Q Consensus 349 L~l~~~~~~~--~lP~~~~~l~-------~L~~L~~~~~ 378 (471)
|++++|..+. .+|.++++++ +|++|++..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 5555553122 3555444443 5555544433
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=2.4e-15 Score=152.44 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=111.1
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccch-hhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCS-DMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~ 345 (471)
.+.++++|+.|.. .|..|.++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|. .+.++++
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCc
Confidence 4556666666642 246677778888888888888777653 677788888888775 4445544 5677777
Q ss_pred CCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 346 LHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 346 L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
|++|++++|..+..+|.. +..+++|++|++..+... .+..+. +.+|+ .|.+++ +.+.+..+..|.++++|
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLE-ELEMSG----NHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---SCCCCTTCTTCC-EEECTT----SCCSEECGGGGTTCTTC
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---cccccccccccc-EEECcC----CcCcccCcccccCccCC
Confidence 777777776677777764 677777777766544332 233444 55665 555554 33444455667777777
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+.|+|++|. +....+..+..+++|++|+|++|.++.+|
T Consensus 245 ~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 245 KKLWVMNSQ---------VSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEEeCCCc---------CceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 777776554 22222344555666666666666665554
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.59 E-value=1.3e-15 Score=164.39 Aligned_cols=88 Identities=28% Similarity=0.369 Sum_probs=46.2
Q ss_pred CCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLA 368 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~ 368 (471)
|..+.++++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..++++++|++|++++|...+.+|..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 444555555555555555555 4455555555555555555444445555555555555555555533334555555555
Q ss_pred CCcccCCee
Q 047511 369 CLLTLCSFV 377 (471)
Q Consensus 369 ~L~~L~~~~ 377 (471)
+|++|++..
T Consensus 515 ~L~~L~L~~ 523 (768)
T 3rgz_A 515 NLAILKLSN 523 (768)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 555554443
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=152.12 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=98.0
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~ 345 (471)
.+.++++|+.|.. .+..|.++++|++|+|++|+++.+|. .+.++++|+.|++++| .+..+|. .+.++++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPS 161 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcc
Confidence 3555666666542 13456677777777777777776654 4667777777777764 3444443 5666777
Q ss_pred CCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 346 LHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 346 L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
|++|++++|..+..+|.. +.++++|++|++..+... .+..+. +.+|+ .|.+++ +.+.+..+..|.++++|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLD-ELDLSG----NHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---SCCCCTTCSSCC-EEECTT----SCCCEECTTTTTTCTTC
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---cccccCCCcccC-EEECCC----CccCccChhhhccCccC
Confidence 777777765566666653 666677776665443322 233344 55555 555544 23333444556666666
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+.|+|+.|. +....+..+..+++|++|+|++|.++.+|
T Consensus 234 ~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 234 QKLWMIQSQ---------IQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CEEECTTCC---------CCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CEEECCCCc---------eeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 666665443 11122233444455555555555554443
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=3.8e-15 Score=141.27 Aligned_cols=176 Identities=21% Similarity=0.230 Sum_probs=117.1
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCC-CCcC-CccccCCCCCcEEEccCCCcccccchhhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETD-IQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 345 (471)
.+..+++|+.|.. .|..+.++++|++|++++|. ++.+ |..+..+++|++|++++|......|..+.++++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 3556666776652 25677788888888888886 7766 567778888888888886544444666778888
Q ss_pred CCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 346 LHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 346 L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
|++|++++| .+..+|.. ++.+++|++|++..+.... .....+. +.+|+ .|.+.+ +.+.+..+..+.++++|
T Consensus 131 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 131 LQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD-RLLLHQ----NRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCC-EEECCS----SCCCEECTTTTTTCTTC
T ss_pred CCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccC-EEECCC----CcccccCHhHccCcccc
Confidence 888888888 56666654 7778888888765543321 1112245 66666 666655 33444556677888888
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+.|++++|. .....++.+..+++|++|+|++|++.
T Consensus 204 ~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 204 MTLYLFANN---------LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSC---------CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cEeeCCCCc---------CCcCCHHHcccCcccCEEeccCCCcc
Confidence 888887665 11112234566778888888888764
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=4.3e-15 Score=140.92 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=128.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCccccc-chhhhccccCCeeecCCCCCCccC-cccccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKM-CSDMGNLLKLHHLDNSDVDASEEI-PKGMGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-P~~~~~l~~L~~L~l~~~~~~~~l-P~~~~~ 366 (471)
+..|.++++|++|++++|.++.+ |..+.++++|++|++++|..++.+ |..+..+++|++|++++| .+..+ |..+.+
T Consensus 49 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 127 (285)
T 1ozn_A 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRG 127 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhC
Confidence 46789999999999999999977 778999999999999997657776 778999999999999999 55555 556889
Q ss_pred CCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 367 LACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 367 l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
+++|++|++..+... ......++ +.+|+ .|.+.+ +.+....+..+.++++|+.|++++|. ....
T Consensus 128 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~---------l~~~ 192 (285)
T 1ozn_A 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLT-HLFLHG----NRISSVPERAFRGLHSLDRLLLHQNR---------VAHV 192 (285)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCS----SCCCEECTTTTTTCTTCCEEECCSSC---------CCEE
T ss_pred CcCCCEEECCCCccc-ccCHhHhccCCCcc-EEECCC----CcccccCHHHhcCccccCEEECCCCc---------cccc
Confidence 999999987665443 11123356 77777 777765 33444444568899999999998775 2333
Q ss_pred hhccCCCCCCcceEEEEeecCCCCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.+..+..+++|++|+|++|.+..+|
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CHhHccCcccccEeeCCCCcCCcCC
Confidence 4677888899999999999988765
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=8.7e-15 Score=137.88 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=113.5
Q ss_pred cccCCCcceeeeC------CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCee
Q 047511 277 FFEFENLQTFLPL------PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHL 349 (471)
Q Consensus 277 ~~~~~~l~~l~~~------p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L 349 (471)
...+++++.|... .+.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|. .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 3444555555421 345677888888888888888764 6788888888888885 4444444 46788888888
Q ss_pred ecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceE
Q 047511 350 DNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLL 427 (471)
Q Consensus 350 ~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 427 (471)
++++| .+..+|+. ++.+++|++|++..+... ......++ +.+|+ .|.+.+ +.+.+..+..++.+++|+.|+
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLT-ELDLSY----NQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCS----SCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCC-EEECCC----CCcCccCHHHhcCCccCCEEE
Confidence 88888 56666655 678888888877655433 11122245 66666 666665 233444445577888888888
Q ss_pred EEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 428 LQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 428 L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
++.|. .....+..+..+++|++|+|++|++.
T Consensus 188 L~~N~---------l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 188 LYQNQ---------LKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSC---------CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCc---------CCccCHHHHhCCcCCCEEEccCCCcc
Confidence 87665 22222344667788888888888765
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=5.1e-16 Score=164.03 Aligned_cols=175 Identities=13% Similarity=0.169 Sum_probs=137.9
Q ss_pred cccccCCCcceee-------e------------------CCCCcC--CCCcceEEEecCCCCC-cCCccccCCCCCcEEE
Q 047511 275 EPFFEFENLQTFL-------P------------------LPNSFG--DLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLM 326 (471)
Q Consensus 275 ~~~~~~~~l~~l~-------~------------------~p~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~ 326 (471)
..+.++++|+.|. . +|+.++ ++++|++|++++|.+. .+|..++++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 3477888888875 2 788888 9999999999999876 7899999999999999
Q ss_pred ccCCC-ccc-ccchhhhcc------ccCCeeecCCCCCCccCcc--cccCCCCCcccCCeeecCcccccccccc-ccccc
Q 047511 327 LQKCN-QLA-KMCSDMGNL------LKLHHLDNSDVDASEEIPK--GMGKLACLLTLCSFVVGKDIGSALQELK-LLHLH 395 (471)
Q Consensus 327 l~~~~-~~~-~lP~~~~~l------~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~ 395 (471)
+++|. ..+ .+|..++++ ++|++|++++| .+..+|. .++++++|++|++..+... +..+ .++ +.+|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE-GKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE-EECC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc-cchh-hhCCCCCCC
Confidence 99976 444 799999887 99999999999 6669998 8999999999987665543 2223 677 77887
Q ss_pred CceEEcccCCCCChhhhHHhhcCCccc-ccceEEEecCCCCCCCCcchHHHhhccCCCC--CCcceEEEEeecCCC
Q 047511 396 GALEISKLENVRDVSEAREAQLNGKKN-LKTLLLQWTSNNGDSREPEIETHVLDMLKPH--QNLERFCISGYGGTK 468 (471)
Q Consensus 396 ~~L~~~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~ 468 (471)
.|.+.+ +.+. .+|..+.++++ |+.|++++|. .. .+|+.+..+ ++|++|++++|.+..
T Consensus 357 -~L~L~~----N~l~-~lp~~l~~l~~~L~~L~Ls~N~---------l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 357 -SLNLAY----NQIT-EIPANFCGFTEQVENLSFAHNK---------LK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp -EEECCS----SEEE-ECCTTSEEECTTCCEEECCSSC---------CS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred -EEECCC----Cccc-cccHhhhhhcccCcEEEccCCc---------Cc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 777765 2233 56777899999 9999998776 22 466666654 489999999998864
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=144.23 Aligned_cols=149 Identities=23% Similarity=0.197 Sum_probs=81.1
Q ss_pred cccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccch--hhhcccc
Q 047511 277 FFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCS--DMGNLLK 345 (471)
Q Consensus 277 ~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~--~~~~l~~ 345 (471)
+.++++|+.|.. .|..|.++++|++|++++|.++.+|.. ++++++|++|++++| .+..+|. .+.++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCC
Confidence 455555555542 244566666677777777766666654 666666777777663 4555655 5666666
Q ss_pred CCeeecCCCCCCccCcc-cccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 346 LHHLDNSDVDASEEIPK-GMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 346 L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
|++|++++|..+..+|+ .++++++|++|++..+... +..+..++ +.+|+ .|.+.+. .........+..+++|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~-~L~l~~n----~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVS-HLILHMK----QHILLLEIFVDVTSSV 224 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEE-EEEEECS----CSTTHHHHHHHHTTTE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhccccCC-eecCCCC----ccccchhhhhhhcccc
Confidence 77777666644555533 4666666666665544332 11223344 45555 4555442 1222222223345566
Q ss_pred cceEEEecC
Q 047511 424 KTLLLQWTS 432 (471)
Q Consensus 424 ~~L~L~~~~ 432 (471)
+.|++++|.
T Consensus 225 ~~L~L~~n~ 233 (353)
T 2z80_A 225 ECLELRDTD 233 (353)
T ss_dssp EEEEEESCB
T ss_pred cEEECCCCc
Confidence 666666554
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=4.1e-14 Score=135.79 Aligned_cols=172 Identities=20% Similarity=0.180 Sum_probs=127.9
Q ss_pred ccccccccCCCcceeee-------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccc
Q 047511 272 KMFEPFFEFENLQTFLP-------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLL 344 (471)
Q Consensus 272 ~~~~~~~~~~~l~~l~~-------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~ 344 (471)
..++.+..+++|+.|.. +++ +..+++|++|++++|.++.+| .+..+++|+.|++++| .+..+|. +..++
T Consensus 54 ~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~ 129 (308)
T 1h6u_A 54 TTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLS 129 (308)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCT
T ss_pred cCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCC
Confidence 33455677778887753 233 788999999999999998876 6888999999999985 5667775 88999
Q ss_pred cCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 345 KLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 345 ~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
+|++|++++| .+..+|. ++.+++|++|++..+... .+..+. +.+|+ .|.+.+. .+.+..+ +..+++|
T Consensus 130 ~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~---~~~~l~~l~~L~-~L~l~~n----~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 130 NLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVS---DLTPLANLSKLT-TLKADDN----KISDISP--LASLPNL 197 (308)
T ss_dssp TCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCC---CCGGGTTCTTCC-EEECCSS----CCCCCGG--GGGCTTC
T ss_pred CCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCC---CChhhcCCCCCC-EEECCCC----ccCcChh--hcCCCCC
Confidence 9999999999 7777776 888999999987655433 233356 77777 7777652 2222222 7888999
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+.|++++|.. . .++ .+..+++|++|+|++|+++..|
T Consensus 198 ~~L~L~~N~l------~----~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 198 IEVHLKNNQI------S----DVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CEEECTTSCC------C----BCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred CEEEccCCcc------C----ccc-cccCCCCCCEEEccCCeeecCC
Confidence 9999987761 1 111 3677889999999999988765
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=1.4e-14 Score=153.00 Aligned_cols=148 Identities=12% Similarity=0.172 Sum_probs=114.6
Q ss_pred cccc--cCCCcceee--------eCCCCcCCCCcceEEEecCCC-CC--cCCccccCC------CCCcEEEccCCCcccc
Q 047511 275 EPFF--EFENLQTFL--------PLPNSFGDLKHLRHLDLSETD-IQ--ILPESVNTL------YNLRTLMLQKCNQLAK 335 (471)
Q Consensus 275 ~~~~--~~~~l~~l~--------~~p~~~~~l~~L~~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~ 335 (471)
..+. ++++|+.|. .+|..++++++|++|++++|+ ++ .+|..++++ ++|+.|++++| .+..
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc
Confidence 4455 788888885 358899999999999999998 88 489998887 99999999996 5559
Q ss_pred cch--hhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-ccc-ccCceEEcccCCCCChhh
Q 047511 336 MCS--DMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLH-LHGALEISKLENVRDVSE 411 (471)
Q Consensus 336 lP~--~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~-L~~~L~~~~l~~~~~~~~ 411 (471)
+|. .++++++|++|++++|...+.+| .++.+++|++|++..+... ..+..+. +.+ |+ .|.+.+.. +.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~-~L~Ls~N~----l~- 390 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE-NLSFAHNK----LK- 390 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC-EEECCSSC----CS-
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCc-EEEccCCc----Cc-
Confidence 999 99999999999999995444999 8999999999987655433 3445566 777 88 77776522 22
Q ss_pred hHHhhcCCcc--cccceEEEecC
Q 047511 412 AREAQLNGKK--NLKTLLLQWTS 432 (471)
Q Consensus 412 ~~~~~l~~l~--~L~~L~L~~~~ 432 (471)
.+|..+..+. +|+.|++++|.
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccchhhhhcccCccCEEECcCCc
Confidence 3445555543 67777777665
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=2.3e-14 Score=133.32 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=110.9
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-cc
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MG 365 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~ 365 (471)
.+|..+. +.++.|++++|.++.++ ..+.++++|++|++++|......|..+..+++|++|++++| .+..+|+. +.
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 104 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD 104 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhc
Confidence 3455554 57888888888888665 46888888888888886544444555788888888888888 66666654 67
Q ss_pred CCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHH
Q 047511 366 KLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIET 444 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 444 (471)
.+++|++|++..+.... .....+. +.+|+ .|.+.+ +.+.+..+..|.++++|+.|+|++|. ...
T Consensus 105 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~ 169 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLK-ELRLNT----NQLQSIPAGAFDKLTNLQTLSLSTNQ---------LQS 169 (251)
T ss_dssp TCTTCCEEECCSSCCCC-CCTTTTTTCTTCC-EEECCS----SCCCCCCTTTTTTCTTCCEEECCSSC---------CSC
T ss_pred ccCCCCEEEcCCCcCCC-cChhHhccCCccc-EEECcC----CcCCccCHHHcCcCcCCCEEECCCCc---------CCc
Confidence 88888888776554331 1112245 66666 666665 23444444568888899999998775 222
Q ss_pred HhhccCCCCCCcceEEEEeecCCC
Q 047511 445 HVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
..+..+..+++|++|+|++|++..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 223456777889999999888754
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=145.61 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=139.0
Q ss_pred cccccCCCcceeee-------C-CCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhccc
Q 047511 275 EPFFEFENLQTFLP-------L-PNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLL 344 (471)
Q Consensus 275 ~~~~~~~~l~~l~~-------~-p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~ 344 (471)
..+.++++|+.|.. + +..|..+++|++|++++|.++.+|. .+.++++|+.|++++|+.++.+|. .+.+++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 35667788888763 2 3468999999999999999998865 789999999999999889988887 588999
Q ss_pred cCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 345 KLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 345 ~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
+|++|++++| .+..+| .+..+++|++|++..+... ......+. +.+|+ .|.+.+ +.+....+..|.++++|
T Consensus 186 ~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~----n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 186 NLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQ-KLWMIQ----SQIQVIERNAFDNLQSL 257 (440)
T ss_dssp SCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCC-EEECTT----CCCCEECTTSSTTCTTC
T ss_pred ccCeecCCCC-cCcccc-ccCCCcccCEEECCCCccC-ccChhhhccCccCC-EEECCC----CceeEEChhhhcCCCCC
Confidence 9999999999 888888 4889999999987665443 22234566 77777 777766 34555666789999999
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+.|+|++|. +....++.+..+++|++|+|++|++.
T Consensus 258 ~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 258 VEINLAHNN---------LTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEEECTTSC---------CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CEEECCCCC---------CCccChhHhccccCCCEEEcCCCCcc
Confidence 999998776 22222345677889999999999864
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=144.23 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=100.9
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+.++++|+.|.. .|..|.++++|++|+|++|.++.+|. .+.++++|++|++++|......|..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 4666777777753 26778888888888888888888875 46788888888888876656667778888888
Q ss_pred CeeecCCCCCCccC-cccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccccc
Q 047511 347 HHLDNSDVDASEEI-PKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLK 424 (471)
Q Consensus 347 ~~L~l~~~~~~~~l-P~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~ 424 (471)
++|++++| .+..+ |..+..+++|++|++..+.... .....+. +.+|+ .|.+.+ +.+....+..|.++++|+
T Consensus 131 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~-~L~l~~----n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 131 KSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLI-VLRLRH----LNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp CEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCC-EEEEES----CCCCEECTTCSCSCTTCC
T ss_pred CEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCc-EEeCCC----CcCcEeChhhcccCcccc
Confidence 88888888 44444 4468888888888766544321 1112244 55666 566654 223333344566666677
Q ss_pred ceEEEecC
Q 047511 425 TLLLQWTS 432 (471)
Q Consensus 425 ~L~L~~~~ 432 (471)
.|+++.|.
T Consensus 204 ~L~l~~~~ 211 (477)
T 2id5_A 204 VLEISHWP 211 (477)
T ss_dssp EEEEECCT
T ss_pred eeeCCCCc
Confidence 77766543
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=3e-14 Score=134.03 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=119.9
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~ 366 (471)
+..|.++++|++|++++|.++.+|.. +.++++|++|++++| .+..+|. .+..+++|++|++++| .+..+|+. ++.
T Consensus 54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 131 (270)
T 2o6q_A 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDS 131 (270)
T ss_dssp TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTT
T ss_pred HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCc
Confidence 34788999999999999999988865 478999999999995 5666664 5688999999999999 66667664 789
Q ss_pred CCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 367 LACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 367 l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
+++|++|++..+.... .....++ +.+|+ .|.+.+ +.+....+..|.++++|+.|+++.|. +...
T Consensus 132 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~-~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~ 196 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQS-LPKGVFDKLTSLK-ELRLYN----NQLKRVPEGAFDKLTELKTLKLDNNQ---------LKRV 196 (270)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCC-EEECCS----SCCSCCCTTTTTTCTTCCEEECCSSC---------CSCC
T ss_pred CcCCCEEECCCCcCCc-cCHhHccCCcccc-eeEecC----CcCcEeChhHhccCCCcCEEECCCCc---------CCcC
Confidence 9999999876654331 1122255 77777 777765 23444444568889999999998776 1111
Q ss_pred hhccCCCCCCcceEEEEeecCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
.+..+..+++|++|+|++|++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 2234667889999999999864
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=4.2e-15 Score=156.18 Aligned_cols=167 Identities=19% Similarity=0.053 Sum_probs=80.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcccccCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPKGMGKLA 368 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~ 368 (471)
|..+..+++|++|++++|.++.+|..+..+++|+.|++++|...+..| ..+..+++|++|++++|......|..++.++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 333445555555555555555555555555555555555543333333 3455555556666555533333444455555
Q ss_pred CCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh
Q 047511 369 CLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL 447 (471)
Q Consensus 369 ~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 447 (471)
+|++|++..+.......+..++ +.+|+ .|.+++ +.+.+..|..+.++++|++|++++|. .....+
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~ 514 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLT-FLDLSK----CQLEQISWGVFDTLHRLQLLNMSHNN---------LLFLDS 514 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTT----SCCCEECTTTTTTCTTCCEEECCSSC---------CSCEEG
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCC-EEECCC----CcCCccChhhhcccccCCEEECCCCc---------CCCcCH
Confidence 5555554333222111223344 45554 444444 22333344455555566666665443 222234
Q ss_pred ccCCCCCCcceEEEEeecCCCCC
Q 047511 448 DMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 448 ~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
..+..+++|++|+|++|+++.+|
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCCCEE
T ss_pred HHccCCCcCCEEECCCCcCcccC
Confidence 44555555555555555554443
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1e-14 Score=139.68 Aligned_cols=80 Identities=24% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch--hhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 295 DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS--DMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
.+++|++|++++|.++.+|..+..+++|++|++++| .+..+|. .+..+++|++|++++|......|..+..+++|++
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 345555555555555555555555555555555552 3333332 4445555555555555222222333444555555
Q ss_pred cCC
Q 047511 373 LCS 375 (471)
Q Consensus 373 L~~ 375 (471)
|++
T Consensus 155 L~l 157 (306)
T 2z66_A 155 LKM 157 (306)
T ss_dssp EEC
T ss_pred EEC
Confidence 544
No 27
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=6.7e-14 Score=133.14 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=121.4
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
.+..+++|++|++++|.++.+|+ +.++++|++|++++| .+..+|. +..+++|++|++++| .+..+| .+..+++|+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLE 137 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCC
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCC
Confidence 47788999999999999999887 999999999999995 5677765 999999999999999 777774 688999999
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccC
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDML 450 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 450 (471)
+|++..+... .+..+. +.+|+ .|.+.+. .+.+..+ +..+++|+.|++++|.. .. + +.+
T Consensus 138 ~L~l~~n~l~---~~~~l~~l~~L~-~L~L~~N----~l~~~~~--l~~l~~L~~L~L~~N~i------~~----l-~~l 196 (291)
T 1h6t_A 138 SLYLGNNKIT---DITVLSRLTKLD-TLSLEDN----QISDIVP--LAGLTKLQNLYLSKNHI------SD----L-RAL 196 (291)
T ss_dssp EEECCSSCCC---CCGGGGGCTTCS-EEECCSS----CCCCCGG--GTTCTTCCEEECCSSCC------CB----C-GGG
T ss_pred EEEccCCcCC---cchhhccCCCCC-EEEccCC----ccccchh--hcCCCccCEEECCCCcC------CC----C-hhh
Confidence 9987665543 235566 77787 7777663 2333333 88999999999997762 11 2 347
Q ss_pred CCCCCcceEEEEeecCCCCC
Q 047511 451 KPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 451 ~~~~~L~~L~L~~~~~~~~P 470 (471)
..+++|+.|++++|++...|
T Consensus 197 ~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TTCTTCSEEEEEEEEEECCC
T ss_pred ccCCCCCEEECcCCcccCCc
Confidence 78899999999999887655
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=2.3e-14 Score=145.09 Aligned_cols=176 Identities=20% Similarity=0.222 Sum_probs=138.7
Q ss_pred cccccCCCcceeee-------C-CCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhccc
Q 047511 275 EPFFEFENLQTFLP-------L-PNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLL 344 (471)
Q Consensus 275 ~~~~~~~~l~~l~~-------~-p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~ 344 (471)
..+..+++|+.|.. + +..|.++++|++|++++|.++.+|. .+.++++|+.|++++|+.++.+|. .+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 35667788888763 2 4458899999999999999998875 789999999999999999999987 488999
Q ss_pred cCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 345 KLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 345 ~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
+|++|++++| .+..+| .+..+++|++|++..+... ......+. +.+|+ .|.+.+ +.+....+..|.++++|
T Consensus 197 ~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~----n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 197 NLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLK-KLWVMN----SQVSLIERNAFDGLASL 268 (452)
T ss_dssp TCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCC-EEECTT----SCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCC-cccccc-cccccccccEEECcCCcCc-ccCcccccCccCCC-EEEeCC----CcCceECHHHhcCCCCC
Confidence 9999999999 778887 5889999999987665543 22244566 77777 777766 34555567779999999
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+.|+|++|. +....+..+..+++|++|+|++|++.
T Consensus 269 ~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNN---------LSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSC---------CSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCc---------CCccChHHhccccCCCEEEccCCCcC
Confidence 999999776 22222345677889999999999864
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=3.7e-14 Score=133.42 Aligned_cols=82 Identities=28% Similarity=0.340 Sum_probs=40.9
Q ss_pred CCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCc
Q 047511 294 GDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLL 371 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~ 371 (471)
.++++|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++| .+..+|.. ++.+++|+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccc
Confidence 445555555555555555443 3345555555555553222222233455555555555555 44444443 45555555
Q ss_pred ccCCe
Q 047511 372 TLCSF 376 (471)
Q Consensus 372 ~L~~~ 376 (471)
+|++.
T Consensus 161 ~L~L~ 165 (270)
T 2o6q_A 161 ELRLY 165 (270)
T ss_dssp EEECC
T ss_pred eeEec
Confidence 55543
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=4.1e-14 Score=134.56 Aligned_cols=159 Identities=25% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
|..|.++++|++|++++|.++.+|.. +.+++|++|++++ +.+..+|..+..+++|++|++++| .+..+|++ +..++
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLG 124 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCT
T ss_pred HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCC
Confidence 45677777888888888877777654 6777888888887 466677777777888888888887 66666643 77788
Q ss_pred CCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh
Q 047511 369 CLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL 447 (471)
Q Consensus 369 ~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 447 (471)
+|++|++..+.... -....+. +.+|+ .|.+.+ +.+....+..+.++++|+.|+|+.|.. ..++
T Consensus 125 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~L~~----N~l~~l~~~~~~~l~~L~~L~L~~N~l----------~~ip 188 (290)
T 1p9a_G 125 ELQELYLKGNELKT-LPPGLLTPTPKLE-KLSLAN----NNLTELPAGLLNGLENLDTLLLQENSL----------YTIP 188 (290)
T ss_dssp TCCEEECTTSCCCC-CCTTTTTTCTTCC-EEECTT----SCCSCCCTTTTTTCTTCCEEECCSSCC----------CCCC
T ss_pred CCCEEECCCCCCCc-cChhhcccccCCC-EEECCC----CcCCccCHHHhcCcCCCCEEECCCCcC----------CccC
Confidence 88887765443321 1112234 55666 565554 223333334567777888888876651 1455
Q ss_pred ccCCCCCCcceEEEEeecCC
Q 047511 448 DMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 448 ~~l~~~~~L~~L~L~~~~~~ 467 (471)
..+...++|++|+|++|++.
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBC
T ss_pred hhhcccccCCeEEeCCCCcc
Confidence 55666667888888887764
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=7.6e-14 Score=135.17 Aligned_cols=177 Identities=19% Similarity=0.191 Sum_probs=103.1
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCC
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLH 347 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 347 (471)
.+.++++|+.|.. .|..+.++++|++|++++|.++.+|..+. ++|+.|++++|......|..+.++++|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 3556666766642 26667777888888888887777776554 5677777776543333344466677777
Q ss_pred eeecCCCCCCc---cCcccccCCCCCcccCCeeecCcc--------------------cccccccc-cccccCceEEccc
Q 047511 348 HLDNSDVDASE---EIPKGMGKLACLLTLCSFVVGKDI--------------------GSALQELK-LLHLHGALEISKL 403 (471)
Q Consensus 348 ~L~l~~~~~~~---~lP~~~~~l~~L~~L~~~~~~~~~--------------------~~~~~~l~-l~~L~~~L~~~~l 403 (471)
+|++++| .+. ..|..+.++++|++|++..+.... ...+..+. +.+|+ .|.+.+
T Consensus 149 ~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~- 225 (330)
T 1xku_A 149 VVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA-KLGLSF- 225 (330)
T ss_dssp EEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCC-EEECCS-
T ss_pred EEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCC-EEECCC-
Confidence 7777766 332 334456666666666543322110 00112233 44444 444443
Q ss_pred CCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 404 ENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 404 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+.+.+..+..+..+++|++|++++|. . ..++..+..+++|++|+|++|+++.+|
T Consensus 226 ---n~l~~~~~~~~~~l~~L~~L~L~~N~---------l-~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 226 ---NSISAVDNGSLANTPHLRELHLNNNK---------L-VKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp ---SCCCEECTTTGGGSTTCCEEECCSSC---------C-SSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred ---CcCceeChhhccCCCCCCEEECCCCc---------C-ccCChhhccCCCcCEEECCCCcCCccC
Confidence 22333333456666677777776554 1 145666777788888888888887765
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=2.8e-14 Score=154.28 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=119.4
Q ss_pred cccccCCCcceee-------e------------------CCCCcC--CCCcceEEEecCCCCC-cCCccccCCCCCcEEE
Q 047511 275 EPFFEFENLQTFL-------P------------------LPNSFG--DLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLM 326 (471)
Q Consensus 275 ~~~~~~~~l~~l~-------~------------------~p~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~ 326 (471)
..+.++++|+.|. . +|+.++ ++++|++|+|++|.+. .+|..++++++|+.|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 3577888888774 3 788887 9999999999999866 8899999999999999
Q ss_pred ccCCC-ccc-ccchhhhccc-------cCCeeecCCCCCCccCcc--cccCCCCCcccCCeeecCcccccccccc-cccc
Q 047511 327 LQKCN-QLA-KMCSDMGNLL-------KLHHLDNSDVDASEEIPK--GMGKLACLLTLCSFVVGKDIGSALQELK-LLHL 394 (471)
Q Consensus 327 l~~~~-~~~-~lP~~~~~l~-------~L~~L~l~~~~~~~~lP~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L 394 (471)
+++|. ..+ .+|..+++++ +|++|++++| .+..+|. .++++++|++|++..+... .++.++ +.+|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKL 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcc
Confidence 99986 444 6999999887 9999999999 6669999 8999999999987665543 333666 7777
Q ss_pred cCceEEcccCCCCChhhhHHhhcCCccc-ccceEEEecC
Q 047511 395 HGALEISKLENVRDVSEAREAQLNGKKN-LKTLLLQWTS 432 (471)
Q Consensus 395 ~~~L~~~~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~ 432 (471)
+ .|.+.+ +.+. .+|..+.++++ |+.|+|++|.
T Consensus 598 ~-~L~Ls~----N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 598 T-DLKLDY----NQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp S-EEECCS----SCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred e-EEECcC----Cccc-cchHHHhhccccCCEEECcCCC
Confidence 7 777765 2233 56667888888 9999998776
No 33
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=6.7e-14 Score=134.28 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=121.7
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
.+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|++++| .+..+|. +..+++|+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCC
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCC
Confidence 67889999999999999999988 999999999999996 577776 6999999999999999 7777875 99999999
Q ss_pred ccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccC
Q 047511 372 TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDML 450 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 450 (471)
+|++..+... .+..++ +.+|+ .|.+.+. .+.+. +. +..+++|+.|++++|.. .. ++ .+
T Consensus 133 ~L~l~~n~l~---~~~~l~~l~~L~-~L~l~~n----~l~~~-~~-l~~l~~L~~L~l~~n~l------~~----~~-~l 191 (308)
T 1h6u_A 133 VLYLDLNQIT---NISPLAGLTNLQ-YLSIGNA----QVSDL-TP-LANLSKLTTLKADDNKI------SD----IS-PL 191 (308)
T ss_dssp EEECCSSCCC---CCGGGGGCTTCC-EEECCSS----CCCCC-GG-GTTCTTCCEEECCSSCC------CC----CG-GG
T ss_pred EEECCCCccC---cCccccCCCCcc-EEEccCC----cCCCC-hh-hcCCCCCCEEECCCCcc------Cc----Ch-hh
Confidence 9987665443 233366 77787 7777763 23332 22 88999999999997762 11 11 26
Q ss_pred CCCCCcceEEEEeecCCCCC
Q 047511 451 KPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 451 ~~~~~L~~L~L~~~~~~~~P 470 (471)
..+++|++|+|++|.+..+|
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG
T ss_pred cCCCCCCEEEccCCccCccc
Confidence 67889999999999987664
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=4.4e-14 Score=148.21 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=41.8
Q ss_pred CcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcc-cccCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPK-GMGKLA 368 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~-~~~~l~ 368 (471)
.|..+++|++|+|++|.++.+|+ .++++++|++|++++| .+..+|.. ++++++|++|++++| .+..+|+ .++.++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATT 171 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCC
Confidence 45555555555555555554433 3455555555555553 34444443 255555555555555 3333332 355555
Q ss_pred CCcccCCe
Q 047511 369 CLLTLCSF 376 (471)
Q Consensus 369 ~L~~L~~~ 376 (471)
+|++|++.
T Consensus 172 ~L~~L~L~ 179 (597)
T 3oja_B 172 SLQNLQLS 179 (597)
T ss_dssp TCCEEECT
T ss_pred cCcEEECc
Confidence 55555443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=7.9e-14 Score=138.35 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=49.6
Q ss_pred CCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcc-cccCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPK-GMGKL 367 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~-~~~~l 367 (471)
..|..+++|++|++++|.++.+| ..++++++|++|++++| .+..+|.. +.++++|++|++++| .+..+|+ .++.+
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 164 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQAT 164 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSC
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCC
Confidence 35666666666666666666553 34566666666666663 45555554 356666666666666 4444433 36666
Q ss_pred CCCcccCCee
Q 047511 368 ACLLTLCSFV 377 (471)
Q Consensus 368 ~~L~~L~~~~ 377 (471)
++|++|++..
T Consensus 165 ~~L~~L~l~~ 174 (390)
T 3o6n_A 165 TSLQNLQLSS 174 (390)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEECCC
Confidence 6666665443
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=4.4e-14 Score=133.28 Aligned_cols=177 Identities=20% Similarity=0.234 Sum_probs=103.6
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~ 345 (471)
.+.++++|+.|.. .+..+.++++|++|++++|.++.++ ..+.++++|++|++++|. +..++. .++.+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence 3455666666642 2345677777777777777777654 567777777777777753 333433 5777777
Q ss_pred CCeeecCCCCCCcc--CcccccCCCCCcccCCeeecCcccccccccc-cccccCceEE-cccCCCCChhhhHHhhcCCcc
Q 047511 346 LHHLDNSDVDASEE--IPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEI-SKLENVRDVSEAREAQLNGKK 421 (471)
Q Consensus 346 L~~L~l~~~~~~~~--lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~-~~l~~~~~~~~~~~~~l~~l~ 421 (471)
|++|++++| .+.. +|..++++++|++|++..+.... .....+. +.+|+ .+.+ .++.. +.+.+..+. .....
T Consensus 126 L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~-~l~l~L~ls~-n~l~~~~~~-~~~~~ 200 (276)
T 2z62_A 126 LKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMP-LLNLSLDLSL-NPMNFIQPG-AFKEI 200 (276)
T ss_dssp CCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCT-TCCEEEECCS-SCCCEECTT-SSCSC
T ss_pred CCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhcc-ccceeeecCC-CcccccCcc-ccCCC
Confidence 777777777 4444 56677777777777765544321 1112333 34333 2211 11111 222222222 23334
Q ss_pred cccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 422 NLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 422 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+|++|++++|. .....+..+..+++|++|+|++|++.
T Consensus 201 ~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 201 RLKELALDTNQ---------LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEEECCSSC---------CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccEEECCCCc---------eeecCHhHhcccccccEEEccCCccc
Confidence 78888887665 11112234567889999999999876
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=134.93 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=126.5
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcc--ccc
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPK--GMG 365 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~--~~~ 365 (471)
+..+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. ++++++|++|++++| .+..+|. .+.
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 146 (353)
T 2z80_A 69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFS 146 (353)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCT
T ss_pred HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhc
Confidence 34789999999999999999977 467999999999999995 66677776 899999999999999 7788987 588
Q ss_pred CCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHH
Q 047511 366 KLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIET 444 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 444 (471)
++++|++|++..+..-.......++ +.+|+ .|.+.+ +.+.+..+..+.++++|++|++++|. ......
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~l~~l~~L~~L~l~~n~------l~~~~~ 215 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDA----SDLQSYEPKSLKSIQNVSHLILHMKQ------HILLLE 215 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEE----TTCCEECTTTTTTCSEEEEEEEECSC------STTHHH
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCC----CCcCccCHHHHhccccCCeecCCCCc------cccchh
Confidence 9999999988765321122234556 77777 777776 33445557789999999999999776 222222
Q ss_pred HhhccCCCCCCcceEEEEeecCCCCC
Q 047511 445 HVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.. +..+++|++|++++|.+..+|
T Consensus 216 ~~---~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 216 IF---VDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp HH---HHHTTTEEEEEEESCBCTTCC
T ss_pred hh---hhhcccccEEECCCCcccccc
Confidence 22 233679999999999987654
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=3.5e-14 Score=126.94 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=112.6
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCccc
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTL 373 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L 373 (471)
..+++|+.|++++|.++.+| .+..+++|++|++++| .+..+| .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55678889999999999888 7889999999999986 565554 68889999999999994444467788999999999
Q ss_pred CCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCC
Q 047511 374 CSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKP 452 (471)
Q Consensus 374 ~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 452 (471)
++..+... ...+..++ +++|+ .|.+.+...... .+ .+.++++|+.|++++|.. . . ...+..
T Consensus 118 ~Ls~n~i~-~~~~~~l~~l~~L~-~L~L~~n~~i~~----~~-~l~~l~~L~~L~l~~n~i------~----~-~~~l~~ 179 (197)
T 4ezg_A 118 DISHSAHD-DSILTKINTLPKVN-SIDLSYNGAITD----IM-PLKTLPELKSLNIQFDGV------H----D-YRGIED 179 (197)
T ss_dssp ECCSSBCB-GGGHHHHTTCSSCC-EEECCSCTBCCC----CG-GGGGCSSCCEEECTTBCC------C----C-CTTGGG
T ss_pred EecCCccC-cHhHHHHhhCCCCC-EEEccCCCCccc----cH-hhcCCCCCCEEECCCCCC------c----C-hHHhcc
Confidence 87665443 22345566 77777 777776331222 23 488899999999987762 1 1 225667
Q ss_pred CCCcceEEEEeecCCC
Q 047511 453 HQNLERFCISGYGGTK 468 (471)
Q Consensus 453 ~~~L~~L~L~~~~~~~ 468 (471)
+++|++|++++|++..
T Consensus 180 l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEEECBC----
T ss_pred CCCCCEEEeeCcccCC
Confidence 8899999999998753
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=4.8e-14 Score=134.03 Aligned_cols=161 Identities=22% Similarity=0.219 Sum_probs=105.5
Q ss_pred CCCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCC
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
+|..+. +.++.|++++|.++.+ |..+.++++|+.|++++| .+..+|.. +.+++|++|++++| .+..+|..+..+
T Consensus 25 ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l 99 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTL 99 (290)
T ss_dssp CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTC
T ss_pred CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccC
Confidence 354443 5778888888888765 456778888888888874 56666654 67788888888888 677788777778
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHh
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHV 446 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 446 (471)
++|++|++..+... .-....+. +.+|+ .|.+.+ +.+....+..|..+++|+.|+|+.|. +. .+
T Consensus 100 ~~L~~L~l~~N~l~-~l~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~---------l~-~l 163 (290)
T 1p9a_G 100 PALTVLDVSFNRLT-SLPLGALRGLGELQ-ELYLKG----NELKTLPPGLLTPTPKLEKLSLANNN---------LT-EL 163 (290)
T ss_dssp TTCCEEECCSSCCC-CCCSSTTTTCTTCC-EEECTT----SCCCCCCTTTTTTCTTCCEEECTTSC---------CS-CC
T ss_pred CCCCEEECCCCcCc-ccCHHHHcCCCCCC-EEECCC----CCCCccChhhcccccCCCEEECCCCc---------CC-cc
Confidence 88888876554433 11123345 66666 666655 22333344556777888888887655 11 23
Q ss_pred hc-cCCCCCCcceEEEEeecCCCCC
Q 047511 447 LD-MLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 447 ~~-~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+. .+..+++|++|+|++|.+..+|
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccC
Confidence 32 3455778888888888877766
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1e-13 Score=144.67 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=122.5
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACL 370 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 370 (471)
+.+..|++|+.|+|++|.++.+|+ +..+++|+.|+|++| .+..+| .+..+++|+.|++++| .+..+| .+..+++|
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L 133 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQL 133 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTC
T ss_pred hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCcc
Confidence 358889999999999999999887 999999999999995 667776 6999999999999999 677765 58899999
Q ss_pred cccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhcc
Q 047511 371 LTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDM 449 (471)
Q Consensus 371 ~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 449 (471)
+.|++..+... .+..+. +.+|+ .|.+++. .+.+..| +..+++|+.|+|+.|.. .. ++.
T Consensus 134 ~~L~Ls~N~l~---~l~~l~~l~~L~-~L~Ls~N----~l~~~~~--l~~l~~L~~L~Ls~N~i------~~-----l~~ 192 (605)
T 1m9s_A 134 ESLYLGNNKIT---DITVLSRLTKLD-TLSLEDN----QISDIVP--LAGLTKLQNLYLSKNHI------SD-----LRA 192 (605)
T ss_dssp SEEECCSSCCC---CCGGGGSCTTCS-EEECCSS----CCCCCGG--GTTCTTCCEEECCSSCC------CB-----CGG
T ss_pred CEEECCCCccC---CchhhcccCCCC-EEECcCC----cCCCchh--hccCCCCCEEECcCCCC------CC-----ChH
Confidence 99988665543 235566 77777 7777662 3334334 88999999999997762 11 245
Q ss_pred CCCCCCcceEEEEeecCCCCC
Q 047511 450 LKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 450 l~~~~~L~~L~L~~~~~~~~P 470 (471)
+..+++|+.|+|++|++...|
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCC
T ss_pred HccCCCCCEEEccCCcCcCCc
Confidence 778899999999999887665
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=1.8e-14 Score=137.99 Aligned_cols=136 Identities=22% Similarity=0.191 Sum_probs=94.4
Q ss_pred CCC-CcCCCCcceEEEecCCCCCcC---CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc--
Q 047511 289 LPN-SFGDLKHLRHLDLSETDIQIL---PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK-- 362 (471)
Q Consensus 289 ~p~-~~~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~-- 362 (471)
+|. .|.++++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+|.
T Consensus 43 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 120 (306)
T 2z66_A 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS 120 (306)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTT
T ss_pred cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccch
Confidence 344 468999999999999998855 677888999999999985 67788888999999999999999 6677765
Q ss_pred cccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhh-hHHhhcCCcccccceEEEecC
Q 047511 363 GMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSE-AREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.+..+++|++|++..+... ......+. +.+|+ .|.+.+ +.+.+ ..|..+..+++|++|++++|.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLE-VLKMAG----NSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp TTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCC-EEECTT----CEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccCCCEEECCCCcCC-ccchhhcccCcCCC-EEECCC----CccccccchhHHhhCcCCCEEECCCCC
Confidence 5888999999977554332 11222344 55555 555543 12222 234455556666666665443
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=7.8e-14 Score=141.17 Aligned_cols=102 Identities=25% Similarity=0.276 Sum_probs=66.6
Q ss_pred ccccCCCcceeee--------C-CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh--hhcc
Q 047511 276 PFFEFENLQTFLP--------L-PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD--MGNL 343 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~--~~~l 343 (471)
.+.++++|+.|.. + |..|.++++|++|++++|.++.+ |..++++++|++|++++|...+.+|.. ++.+
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 4556666666642 1 45577777777777777777754 667777777777777776544445554 6777
Q ss_pred ccCCeeecCCCCCCccC-ccc-ccCCCCCcccCCeee
Q 047511 344 LKLHHLDNSDVDASEEI-PKG-MGKLACLLTLCSFVV 378 (471)
Q Consensus 344 ~~L~~L~l~~~~~~~~l-P~~-~~~l~~L~~L~~~~~ 378 (471)
++|++|++++| .+..+ |.. ++++++|++|++..+
T Consensus 129 ~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 129 TSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 77777777777 44444 444 667777777765443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=1.5e-13 Score=133.15 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCc---cCccccc
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASE---EIPKGMG 365 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~---~lP~~~~ 365 (471)
|..|.++++|++|++++|.++.+|..+. ++|++|++++| .+..+|. .+..+++|++|++++| .+. ..|..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFD 170 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCCCccccc
Confidence 4455566666666666666665555444 45555555553 3333333 3555566666666555 222 2233333
Q ss_pred CCCCCcccCCeeecCcc--------------------cccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccccc
Q 047511 366 KLACLLTLCSFVVGKDI--------------------GSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLK 424 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~--------------------~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~ 424 (471)
.+ +|++|++..+.... ......+. +.+|+ .|.+.+ +.+.+..+..+..+++|+
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY-RLGLGH----NQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCS-CCBCCS----SCCCCCCTTGGGGCTTCC
T ss_pred CC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCC-EEECCC----CcCCcCChhHhhCCCCCC
Confidence 33 33333322211100 00112233 33444 343333 222333334566666666
Q ss_pred ceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 425 TLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 425 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+|++++|. . ..+|..+..+++|++|++++|.++.+|
T Consensus 245 ~L~L~~N~---------l-~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 245 ELHLDNNK---------L-SRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp EEECCSSC---------C-CBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred EEECCCCc---------C-eecChhhhcCccCCEEECCCCCCCccC
Confidence 67766554 1 134555666777777777777776654
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.45 E-value=2.1e-13 Score=137.98 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=9.4
Q ss_pred cCCCCcceEEEecCCCCC
Q 047511 293 FGDLKHLRHLDLSETDIQ 310 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~ 310 (471)
+.++++|++|++++|.++
T Consensus 150 ~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp GGGCTTCCEEECTTCCBS
T ss_pred cCCCCcccEEeCCCCccc
Confidence 445555555555555544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.44 E-value=2.5e-13 Score=131.58 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=99.5
Q ss_pred cCCCCcceEEEecCCCCC---cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccC-cccccCCC
Q 047511 293 FGDLKHLRHLDLSETDIQ---ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEI-PKGMGKLA 368 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~l-P~~~~~l~ 368 (471)
+.++++|++|++++|.++ ..|..+.++++|+.|++++| .+..+|..+. ++|++|++++| .+..+ |..+..++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLN 216 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTS-CCCEECTGGGTTCT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCC-cCCccCHHHhcCCC
Confidence 455666666666666654 23455666666666666663 4555665443 67777777777 44444 55688899
Q ss_pred CCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh
Q 047511 369 CLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL 447 (471)
Q Consensus 369 ~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 447 (471)
+|++|++..+.... .....+. +.+|+ .|.+.+.. +. .+|..+..+++|++|++++|..... ....+
T Consensus 217 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~-~L~L~~N~----l~-~lp~~l~~l~~L~~L~l~~N~i~~~------~~~~f 283 (330)
T 1xku_A 217 NLAKLGLSFNSISA-VDNGSLANTPHLR-ELHLNNNK----LV-KVPGGLADHKYIQVVYLHNNNISAI------GSNDF 283 (330)
T ss_dssp TCCEEECCSSCCCE-ECTTTGGGSTTCC-EEECCSSC----CS-SCCTTTTTCSSCCEEECCSSCCCCC------CTTSS
T ss_pred CCCEEECCCCcCce-eChhhccCCCCCC-EEECCCCc----Cc-cCChhhccCCCcCEEECCCCcCCcc------Chhhc
Confidence 99999876554431 1223466 77787 77777632 22 4566789999999999998873221 11111
Q ss_pred cc---CCCCCCcceEEEEeecCCC
Q 047511 448 DM---LKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 448 ~~---l~~~~~L~~L~L~~~~~~~ 468 (471)
.. ....+.|+.|++++|++..
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcccccccccccceEeecCcccc
Confidence 11 1124689999999998753
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=3e-14 Score=136.98 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCCcceEEEecCCCCCcCCccccCC-----CCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCcc--Ccccc--
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTL-----YNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEE--IPKGM-- 364 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~--lP~~~-- 364 (471)
..+++|++|++++|.++.+|..++.+ ++|++|++++|...+..|..++++++|++|++++|...+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 55666666666666665555555544 5566666665433333335555666666666665532322 23333
Q ss_pred cCCCCCcccCCee
Q 047511 365 GKLACLLTLCSFV 377 (471)
Q Consensus 365 ~~l~~L~~L~~~~ 377 (471)
+.+++|++|++..
T Consensus 198 ~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 198 LKFPTLQVLALRN 210 (312)
T ss_dssp TSCTTCCEEECTT
T ss_pred ccCCCCCEEECCC
Confidence 5555555555443
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=9e-14 Score=144.23 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=125.2
Q ss_pred CCCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCc--cCcccccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASE--EIPKGMGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~--~lP~~~~~ 366 (471)
|..|.++++|++|++++|+++.+| ..++++++|++|++++|...+..|..++++++|++|++++| .+. .+|..+++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhc
Confidence 678999999999999999999775 68999999999999996544444455999999999999999 555 45678999
Q ss_pred CCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 367 LACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 367 l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
+++|++|++..+.....-....+. +++|+ .|.+.+ +.+.+..|..++++++|+.|++++|. .......
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~----n~l~~~~~~~l~~l~~L~~L~l~~n~------~~~~~~~ 190 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKA----LSLRNYQSQSLKSIRDIHHLTLHLSE------SAFLLEI 190 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEE----TTCCEECTTTTTTCSEEEEEEEECSB------STTHHHH
T ss_pred cCCccEEECCCCccccccCHhhhhcccccC-eeeccC----CcccccChhhhhccccCceEecccCc------ccccchh
Confidence 999999988766422111123566 77777 777776 34555667789999999999999776 2222222
Q ss_pred hhccCCCCCCcceEEEEeecCCCC
Q 047511 446 VLDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 446 ~~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
. +..+++|++|++++|.+..+
T Consensus 191 ~---~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 191 F---ADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp H---HHSTTTBSEEEEESCBCTTC
T ss_pred h---HhhcccccEEEccCCccccc
Confidence 2 23467999999999998765
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.1e-13 Score=145.09 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=112.5
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+..+++|+.|.. .|..|+++++|++|+|++|.++.+|+. ++++++|++|++++|...+..|..++.+++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 5667778887753 245678999999999999999988876 4889999999999976555556678999999
Q ss_pred CeeecCCCCCCccCcccccCCCCCcccCCeeecCc-------------------------------------cccccccc
Q 047511 347 HHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKD-------------------------------------IGSALQEL 389 (471)
Q Consensus 347 ~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~-------------------------------------~~~~~~~l 389 (471)
++|++++| .+..+| ++.+++|++|++..+... ....+..+
T Consensus 174 ~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l 250 (597)
T 3oja_B 174 QNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 250 (597)
T ss_dssp CEEECTTS-CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG
T ss_pred cEEECcCC-CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh
Confidence 99999998 555554 233444433322111100 00112234
Q ss_pred c-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCC
Q 047511 390 K-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 390 ~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
+ +++|+ .|.+++ +.+.+..|..|+++++|+.|+|++|.. ..++..+.++++|++|+|++|.+..
T Consensus 251 ~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 251 LNYPGLV-EVDLSY----NELEKIMYHPFVKMQRLERLYISNNRL----------VALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp GGCTTCS-EEECCS----SCCCEEESGGGTTCSSCCEEECTTSCC----------CEEECSSSCCTTCCEEECCSSCCCC
T ss_pred ccCCCCC-EEECCC----CccCCCCHHHhcCccCCCEEECCCCCC----------CCCCcccccCCCCcEEECCCCCCCc
Confidence 4 55555 555554 334555566777778888888876641 1133444455566666666666555
Q ss_pred CC
Q 047511 469 CR 470 (471)
Q Consensus 469 ~P 470 (471)
+|
T Consensus 316 i~ 317 (597)
T 3oja_B 316 VE 317 (597)
T ss_dssp CG
T ss_pred cC
Confidence 44
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=3.7e-13 Score=139.59 Aligned_cols=181 Identities=23% Similarity=0.191 Sum_probs=131.3
Q ss_pred cccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCccc-ccchhhhccc
Q 047511 275 EPFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLA-KMCSDMGNLL 344 (471)
Q Consensus 275 ~~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lP~~~~~l~ 344 (471)
..+.++++|+.|.. .|..|.++++|++|++++|.++.+|+. ++++++|++|++++|.... ..|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 35677888888863 357899999999999999999988765 9999999999999964433 4577899999
Q ss_pred cCCeeecCCCCCCccCcc-cccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccc
Q 047511 345 KLHHLDNSDVDASEEIPK-GMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKN 422 (471)
Q Consensus 345 ~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~ 422 (471)
+|++|++++|..++.+|+ .++++++|++|++..+... +..+..++ +.+|+ .|.+.... ........+..+++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~-~L~l~~n~----~~~~~~~~~~~l~~ 197 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIH-HLTLHLSE----SAFLLEIFADILSS 197 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEE-EEEEECSB----STTHHHHHHHSTTT
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccccCc-eEecccCc----ccccchhhHhhccc
Confidence 999999999966888875 6999999999988766543 33455666 77777 77776532 22222223456889
Q ss_pred ccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 423 LKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 423 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
|+.|++++|..... ..........+++|++|++++|.+.
T Consensus 198 L~~L~L~~n~l~~~------~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 198 VRYLELRDTNLARF------QFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp BSEEEEESCBCTTC------CCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred ccEEEccCCccccc------cccccchhhhhhcccceeccccccc
Confidence 99999998762110 0000112234678999999988653
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.43 E-value=1.3e-13 Score=133.80 Aligned_cols=163 Identities=18% Similarity=0.177 Sum_probs=119.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l 367 (471)
|..|.++++|++|++++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|++++| .+..+|.. +.++
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l 146 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGL 146 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSC
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCC
Confidence 56799999999999999999977 778999999999999995 6778988776 89999999999 77788775 8899
Q ss_pred CCCcccCCeeecCcc-cccccccc-c--------------------ccccCceEEcccCCCCChhhhHHhhcCCcccccc
Q 047511 368 ACLLTLCSFVVGKDI-GSALQELK-L--------------------LHLHGALEISKLENVRDVSEAREAQLNGKKNLKT 425 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~-~~~~~~l~-l--------------------~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~ 425 (471)
++|++|++..+.... +.....++ + .+|+ .|.+.+ +.+.+..+..+.++++|+.
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~-~L~l~~----n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN-ELHLDH----NKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCS-CCBCCS----SCCCCCCTTSSTTCTTCSC
T ss_pred ccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCC-EEECCC----CcCCccCHHHhcCCCCCCE
Confidence 999999876654431 11122222 2 1233 333322 2233444567888889999
Q ss_pred eEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 426 LLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 426 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
|++++|.. ....+..+..+++|++|+|++|.+..+|
T Consensus 222 L~L~~N~l---------~~~~~~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 222 LGLGHNQI---------RMIENGSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp CBCCSSCC---------CCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred EECCCCcC---------CcCChhHhhCCCCCCEEECCCCcCeecC
Confidence 99987752 2222335667889999999999998887
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=1.9e-13 Score=128.82 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=117.9
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc-cccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK-GMGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~l 367 (471)
+..+.++++|++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|++++| .+..++. .++++
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 123 (276)
T 2z62_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHL 123 (276)
T ss_dssp TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTC
T ss_pred HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccC
Confidence 4478889999999999999987764 7888999999999986544445567889999999999998 6666665 58899
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccccc----ceEEEecCCCCCCCCcch
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLK----TLLLQWTSNNGDSREPEI 442 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~ 442 (471)
++|++|++..+.......+..++ +.+|+ .|.+.+ +.+.+..+..+..+.+|+ +|++++|. .
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~---------l 189 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSS----NKIQSIYCTDLRVLHQMPLLNLSLDLSLNP---------M 189 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCS----SCCCEECGGGGHHHHTCTTCCEEEECCSSC---------C
T ss_pred CCCCEEECcCCccceecCchhhccCCCCC-EEECCC----CCCCcCCHHHhhhhhhccccceeeecCCCc---------c
Confidence 99999987665544323345566 77777 777765 233343444566666666 67777655 1
Q ss_pred HHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 443 ETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 443 ~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
. .++.......+|++|+|++|.++.+|
T Consensus 190 ~-~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 190 N-FIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp C-EECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred c-ccCccccCCCcccEEECCCCceeecC
Confidence 1 23333333447999999999888776
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=2e-13 Score=135.39 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+..+++|+.|.. .|..+.++++|++|++++|.++.+|.. +.++++|++|++++|......|..+..+++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 4567777777753 255678899999999999999988876 4788999999999865444445568888999
Q ss_pred CeeecCCCCCCccCcccccCCCCCcccCCeeecCc-------------------------------------cccccccc
Q 047511 347 HHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKD-------------------------------------IGSALQEL 389 (471)
Q Consensus 347 ~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~-------------------------------------~~~~~~~l 389 (471)
++|++++| .+..+| ++.+++|++|++..+... ....+..+
T Consensus 168 ~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l 244 (390)
T 3o6n_A 168 QNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 244 (390)
T ss_dssp CEEECCSS-CCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred CEEECCCC-cCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence 99999888 555544 233333333322111100 00111223
Q ss_pred c-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCC
Q 047511 390 K-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 390 ~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
+ +++|+ .|.+++ +.+.+..+..+.++++|++|++++|.. ..++..+..+++|++|+|++|.+..
T Consensus 245 ~~l~~L~-~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 245 LNYPGLV-EVDLSY----NELEKIMYHPFVKMQRLERLYISNNRL----------VALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp GGCTTCS-EEECCS----SCCCEEESGGGTTCSSCCEEECCSSCC----------CEEECSSSCCTTCCEEECCSSCCCC
T ss_pred cCCCCcc-EEECCC----CcCCCcChhHccccccCCEEECCCCcC----------cccCcccCCCCCCCEEECCCCccee
Confidence 4 45555 555554 334444566677778888888876651 1123333445556666666655554
Q ss_pred CC
Q 047511 469 CR 470 (471)
Q Consensus 469 ~P 470 (471)
+|
T Consensus 310 ~~ 311 (390)
T 3o6n_A 310 VE 311 (390)
T ss_dssp CG
T ss_pred cC
Confidence 43
No 53
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=3.8e-13 Score=125.94 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=103.7
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
+..+++|++|++++|.++.+| .+..+++|+.|++++| .+..+|. +..+++|++|++++| .+..+|.... ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 456677888888888888777 6778888888888874 5666766 788888888888888 6666765333 77888
Q ss_pred cCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCC
Q 047511 373 LCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLK 451 (471)
Q Consensus 373 L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 451 (471)
|++..+... .+..+. +.+|+ .|.+++. .+.+. + .++.+++|+.|++++|.. ... +.+.
T Consensus 111 L~L~~N~l~---~~~~l~~l~~L~-~L~Ls~N----~i~~~-~-~l~~l~~L~~L~L~~N~i------~~~-----~~l~ 169 (263)
T 1xeu_A 111 LFLDNNELR---DTDSLIHLKNLE-ILSIRNN----KLKSI-V-MLGFLSKLEVLDLHGNEI------TNT-----GGLT 169 (263)
T ss_dssp EECCSSCCS---BSGGGTTCTTCC-EEECTTS----CCCBC-G-GGGGCTTCCEEECTTSCC------CBC-----TTST
T ss_pred EEccCCccC---CChhhcCccccc-EEECCCC----cCCCC-h-HHccCCCCCEEECCCCcC------cch-----HHhc
Confidence 876555433 234455 66666 6666552 22222 2 477888888888887651 111 5567
Q ss_pred CCCCcceEEEEeecCCCCC
Q 047511 452 PHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 452 ~~~~L~~L~L~~~~~~~~P 470 (471)
.+++|++|++++|++...|
T Consensus 170 ~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCCCCCEEEEEEEEEECCC
T ss_pred cCCCCCEEeCCCCcccCCc
Confidence 7888888888888876554
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.41 E-value=1.3e-13 Score=144.73 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=140.9
Q ss_pred ccccCCCcceee-------eCCCCcCCCCcceEEEecCCCCCcCC--ccccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 276 PFFEFENLQTFL-------PLPNSFGDLKHLRHLDLSETDIQILP--ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 276 ~~~~~~~l~~l~-------~~p~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
.+..+++|+.|. .+|..+..+++|+.|++++|.+..++ ..+.++++|+.|++++|......|..+..+++|
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 345667777765 34788999999999999999998765 478999999999999988778889999999999
Q ss_pred CeeecCCCCCCcc-CcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccccc
Q 047511 347 HHLDNSDVDASEE-IPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLK 424 (471)
Q Consensus 347 ~~L~l~~~~~~~~-lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~ 424 (471)
++|++++|...+. +|..++.+++|++|++..+... +..+..++ +++|+ .|.+++ +.+.+..|..+.++++|+
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQ-LLNMSH----NNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC-EEECCS----SCCSCEEGGGTTTCTTCC
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-ccChhhhcccccCC-EEECCC----CcCCCcCHHHccCCCcCC
Confidence 9999999944442 6778999999999988666543 22334566 78888 787776 345666688899999999
Q ss_pred ceEEEecCCCCCCCCcchHHHhhccCCCCC-CcceEEEEeecCCC
Q 047511 425 TLLLQWTSNNGDSREPEIETHVLDMLKPHQ-NLERFCISGYGGTK 468 (471)
Q Consensus 425 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~ 468 (471)
.|+|++|. .. .++..+..++ +|++|++++|++..
T Consensus 525 ~L~l~~N~---------l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 525 TLDCSFNR---------IE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EEECTTSC---------CC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EEECCCCc---------Cc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 99998776 22 4666677765 69999999998863
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.1e-13 Score=127.57 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=89.9
Q ss_pred CcCCCCcceEEEecCCC-CCcCCc-cccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcccccCCC
Q 047511 292 SFGDLKHLRHLDLSETD-IQILPE-SVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPKGMGKLA 368 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~ 368 (471)
.|.++++|++|++++|. ++.+|+ .+.++++|++|++++|+.++.+| ..+..+++|++|++++| .+..+|. ++.++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccc
Confidence 56667777777777775 666654 56677777777777644555555 34566777777777777 5555665 66666
Q ss_pred CCc---ccCCeee-cCcccccccccccccccCceE-EcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchH
Q 047511 369 CLL---TLCSFVV-GKDIGSALQELKLLHLHGALE-ISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIE 443 (471)
Q Consensus 369 ~L~---~L~~~~~-~~~~~~~~~~l~l~~L~~~L~-~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 443 (471)
+|+ +|++..+ .... -....+. .+. .|. ...+.+ +.+....+..+.. ++|+.|+++.|. ...
T Consensus 128 ~L~~L~~L~l~~N~~l~~-i~~~~~~--~l~-~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~L~~n~--------~l~ 193 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTS-IPVNAFQ--GLC-NETLTLKLYN-NGFTSVQGYAFNG-TKLDAVYLNKNK--------YLT 193 (239)
T ss_dssp BCCSEEEEEEESCTTCCE-ECTTTTT--TTB-SSEEEEECCS-CCCCEECTTTTTT-CEEEEEECTTCT--------TCC
T ss_pred ccccccEEECCCCcchhh-cCccccc--chh-cceeEEEcCC-CCCcccCHhhcCC-CCCCEEEcCCCC--------Ccc
Confidence 666 5554433 2110 0001122 222 222 222221 1222111222333 567777776442 011
Q ss_pred HHh-hccCCCC-CCcceEEEEeecCCCCC
Q 047511 444 THV-LDMLKPH-QNLERFCISGYGGTKCR 470 (471)
Q Consensus 444 ~~~-~~~l~~~-~~L~~L~L~~~~~~~~P 470 (471)
.+ +..+..+ ++|++|+|++|.++.+|
T Consensus 194 -~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 194 -VIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp -EECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred -cCCHHHhhccccCCcEEECCCCccccCC
Confidence 23 3456667 89999999999998877
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=3.7e-13 Score=126.70 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=123.2
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACL 370 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L 370 (471)
....+++|+.|++++|.++.++ .+..+++|++|++++| .+..+| .+..+++|++|++++| .+..+|+. ++++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 3556789999999999999876 5889999999999996 566665 7999999999999999 67777765 7899999
Q ss_pred cccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhcc
Q 047511 371 LTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDM 449 (471)
Q Consensus 371 ~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 449 (471)
++|++..+... ......++ +.+|+ .|.+.+. .+.+..+..++++++|+.|++++|. .....+..
T Consensus 112 ~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~~ 176 (272)
T 3rfs_A 112 KELVLVENQLQ-SLPDGVFDKLTNLT-YLNLAHN----QLQSLPKGVFDKLTNLTELDLSYNQ---------LQSLPEGV 176 (272)
T ss_dssp CEEECTTSCCC-CCCTTTTTTCTTCC-EEECCSS----CCCCCCTTTTTTCTTCCEEECCSSC---------CCCCCTTT
T ss_pred CEEECCCCcCC-ccCHHHhccCCCCC-EEECCCC----ccCccCHHHhccCccCCEEECCCCC---------cCccCHHH
Confidence 99987665443 11222356 77787 7777662 3444455668899999999999776 22222344
Q ss_pred CCCCCCcceEEEEeecCCCCC
Q 047511 450 LKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 450 l~~~~~L~~L~L~~~~~~~~P 470 (471)
+..+++|++|+|++|.+..+|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCC
T ss_pred hcCCccCCEEECCCCcCCccC
Confidence 677899999999999988765
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=8.1e-13 Score=128.75 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=38.9
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
+..+++|+.|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|++|++++| .+..+|. +..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~ 247 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTW 247 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred hccCCCCCEEEccCCccccccc-ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCE
Confidence 4445555555555555555443 444555555555543 3333332 445555555555555 4444443 445555555
Q ss_pred cCCe
Q 047511 373 LCSF 376 (471)
Q Consensus 373 L~~~ 376 (471)
|++.
T Consensus 248 L~l~ 251 (347)
T 4fmz_A 248 LEIG 251 (347)
T ss_dssp EECC
T ss_pred EECC
Confidence 5443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=6.3e-13 Score=135.43 Aligned_cols=136 Identities=24% Similarity=0.245 Sum_probs=106.3
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcccccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
|..|.++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++|......|..+.++
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 67889999999999999999976 778999999999999995 57777764 6899999999999994444445568999
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
++|++|++..+... ......+. +.+|+ .|.+.+ +.+....+..+.++++|+.|+++.|.
T Consensus 128 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEK----CNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TTCCEEEECCTTCC-EECTTSSTTCTTCC-EEEEES----CCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred ccCCEEECCCCccc-eeChhhccCCCCCC-EEECCC----CcCcccChhHhcccCCCcEEeCCCCc
Confidence 99999987655433 12234566 77888 788876 33444455678999999999999876
No 59
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=5.8e-13 Score=139.83 Aligned_cols=166 Identities=19% Similarity=0.119 Sum_probs=91.1
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcccccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|......|.. +..+++|++|++++|......|..++.+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 34455555666666666655533 445555666666666654333333322 5566666666666663333334446666
Q ss_pred CCCcccCCeeecCccc--ccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHH
Q 047511 368 ACLLTLCSFVVGKDIG--SALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIET 444 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~--~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 444 (471)
++|++|++..+..... .....++ +.+|+ .|.+.+ +.+.+..|..|.++++|+.|+|++|. ...
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~-~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~ 514 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLE-ILVLSF----CDLSSIDQHAFTSLKMMNHVDLSHNR---------LTS 514 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCC-EEECTT----SCCCEECTTTTTTCTTCCEEECCSSC---------CCG
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCcc-EEECCC----CccCccChhhhccccCCCEEECCCCc---------cCc
Confidence 6666666544433211 1112344 55555 555554 23444455667777777777777654 333
Q ss_pred HhhccCCCCCCcceEEEEeecCCCCC
Q 047511 445 HVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
..++.+..+++| +|+|++|.++.+|
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CChhHhCccccc-EEECcCCcccccC
Confidence 445666666677 7777777766554
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=4.1e-13 Score=140.98 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=85.1
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACL 370 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L 370 (471)
.|.++++|++|++++|.++.+|..+.++++|++|++++|......|..+..+++|++|++++|.....+|.. ++.+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 355666666666666666666666666666666666664433333555666666666666666444455544 5556666
Q ss_pred cccCCeeecCcccc-cccccc-cccccCceEEcccCCCCChhhhHHhh-------------------------cCCcccc
Q 047511 371 LTLCSFVVGKDIGS-ALQELK-LLHLHGALEISKLENVRDVSEAREAQ-------------------------LNGKKNL 423 (471)
Q Consensus 371 ~~L~~~~~~~~~~~-~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~-------------------------l~~l~~L 423 (471)
++|++..+...... ....++ +.+|+ .|.+.+ +.+.+..+.. +.++++|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLSY----NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCC-EEECCS----CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred CEEECCCCccccccCcchhcccCCCCC-EEECCC----CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 66654433322110 022233 44444 444433 1122222333 4455555
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
+.|++++|. .....+..+..+++|++|+|++|.+..
T Consensus 428 ~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 428 KVLNLSHSL---------LDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CEEECTTCC---------CBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CEEECCCCc---------cCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 555555433 223345556667788888888777643
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=1.1e-12 Score=127.90 Aligned_cols=96 Identities=19% Similarity=0.291 Sum_probs=49.9
Q ss_pred cccCCCcceeeeC------CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeee
Q 047511 277 FFEFENLQTFLPL------PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLD 350 (471)
Q Consensus 277 ~~~~~~l~~l~~~------p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~ 350 (471)
+..+++|+.|... .+.+.++++|++|++++|.++.+|. +..+++|+.|++++|.....+|. +..+++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEE
Confidence 4455555555321 2235555666666666666655554 55556666666665544444433 55555555555
Q ss_pred cCCCCCCccCcccccCCCCCcccCCe
Q 047511 351 NSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 351 l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
+++| .+..+|. +..+++|++|++.
T Consensus 162 l~~~-~~~~~~~-~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 162 VTES-KVKDVTP-IANLTDLYSLSLN 185 (347)
T ss_dssp CCSS-CCCCCGG-GGGCTTCSEEECT
T ss_pred ecCC-CcCCchh-hccCCCCCEEEcc
Confidence 5555 3344433 4555555555443
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=143.51 Aligned_cols=164 Identities=17% Similarity=0.078 Sum_probs=107.6
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
..+..+++|++|++++|.+..+|+.+..+++|+.|++++|......| ..+..+++|++|++++|......|..+..+++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 34556677777777777777666667777777777777754333333 35677777888888777444445556777888
Q ss_pred CcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhc
Q 047511 370 LLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLD 448 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 448 (471)
|++|++..+....+..+..+. +++|+ .|.+.+ +.+.+..|..+.++++|+.|++++|. .....+.
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~-~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~ 512 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQ----CQLEQLSPTAFNSLSSLQVLNMASNQ---------LKSVPDG 512 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCC-EEECTT----SCCCEECTTTTTTCTTCCEEECCSSC---------CSCCCTT
T ss_pred CcEEECcCCcCccccchhhhhcccCCC-EEECCC----CccccCChhhhhcccCCCEEeCCCCc---------CCCCCHH
Confidence 888776554432223344555 66776 666665 33455556778888888888888665 2222334
Q ss_pred cCCCCCCcceEEEEeecCCC
Q 047511 449 MLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 449 ~l~~~~~L~~L~L~~~~~~~ 468 (471)
.+..+++|++|++++|++..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 56778889999999888753
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=2.1e-13 Score=131.06 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=116.2
Q ss_pred CCCcceEEEecCCCCC-cCCccc--cCCCCCcEEEccCCCcccccchhhhcc-----ccCCeeecCCCCCCccCc-cccc
Q 047511 295 DLKHLRHLDLSETDIQ-ILPESV--NTLYNLRTLMLQKCNQLAKMCSDMGNL-----LKLHHLDNSDVDASEEIP-KGMG 365 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~lP~~~~~l-----~~L~~L~l~~~~~~~~lP-~~~~ 365 (471)
++++|++|++++|.++ .+|..+ ..+++|++|++++| .+..+|..++.+ ++|++|++++| .+..+| ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 6899999999999998 688876 89999999999996 566669889888 99999999999 666666 6799
Q ss_pred CCCCCcccCCeeecCcc-ccccccc--c-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcc
Q 047511 366 KLACLLTLCSFVVGKDI-GSALQEL--K-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPE 441 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~-~~~~~~l--~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 441 (471)
++++|++|++..+.... ...+..+ + +.+|+ .|.+.+..- ..........+.++++|+.|++++|....
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRD------ 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-EEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSCCCS------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-EEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCcCCc------
Confidence 99999999987665321 1123333 5 77777 777766321 11223333445678899999998776211
Q ss_pred hHHHhh-ccCCCCCCcceEEEEeecCCCCC
Q 047511 442 IETHVL-DMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 442 ~~~~~~-~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
..+ ..+..+++|++|+|++|.++.+|
T Consensus 243 ---~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 243 ---AAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp ---SCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred ---ccchhhhhhcCCCCEEECCCCccChhh
Confidence 111 23344567777777777776665
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=7.2e-13 Score=123.10 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=118.8
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCC
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCS 375 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~ 375 (471)
...+.++++++.++.+|..+. .+++.|++++|...+..|..+.++++|++|++++| .+..+|+. +..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 356789999999999998876 68999999997655555667999999999999999 66666654 899999999987
Q ss_pred eeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCC
Q 047511 376 FVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQ 454 (471)
Q Consensus 376 ~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (471)
..+... ......+. +.+|+ .|.+.+ +.+....+..+.++++|+.|+|++|. +....+..+..++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~l~ 155 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLD-KLYLGG----NQLKSLPSGVFDRLTKLKELRLNTNQ---------LQSIPAGAFDKLT 155 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCC-EEECCS----SCCCCCCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCT
T ss_pred CCCccc-ccChhHhcccCCCC-EEEcCC----CcCCCcChhHhccCCcccEEECcCCc---------CCccCHHHcCcCc
Confidence 665543 11223445 77777 777766 33444445567899999999999776 2222223577889
Q ss_pred CcceEEEEeecCCCCC
Q 047511 455 NLERFCISGYGGTKCR 470 (471)
Q Consensus 455 ~L~~L~L~~~~~~~~P 470 (471)
+|++|+|++|.+..+|
T Consensus 156 ~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred CCCEEECCCCcCCccC
Confidence 9999999999998776
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=143.26 Aligned_cols=101 Identities=30% Similarity=0.388 Sum_probs=62.4
Q ss_pred ccccCCCcceeee--------C-CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh--hhcc
Q 047511 276 PFFEFENLQTFLP--------L-PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD--MGNL 343 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~--~~~l 343 (471)
.+.++++|+.|.. + |..|.++++|++|+|++|.++.+ |..++++++|++|++++|...+.+|.. ++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 4555666666542 1 55567777777777777777654 666777777777777775544445554 6667
Q ss_pred ccCCeeecCCCCCCccC-c-ccccCCCCCcccCCee
Q 047511 344 LKLHHLDNSDVDASEEI-P-KGMGKLACLLTLCSFV 377 (471)
Q Consensus 344 ~~L~~L~l~~~~~~~~l-P-~~~~~l~~L~~L~~~~ 377 (471)
++|++|++++| .+..+ | ..++++++|++|++..
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CCCCEEECCCC-cccccccchhHhhCCCCCEEECCC
Confidence 77777777776 33333 2 3466677776665544
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=6.8e-13 Score=126.16 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=119.6
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
+..+++|+.|++++|.++.+|. +..+++|++|++++| .+..+|. +.++++|++|++++| .+..+|. ++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 3457889999999999999864 899999999999995 6677776 999999999999999 7777764 999999999
Q ss_pred cCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCC
Q 047511 373 LCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLK 451 (471)
Q Consensus 373 L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 451 (471)
|++..+... .+..+. +.+|+ .|.+.+. .+.+. ..+.++++|+.|++++|.. . .++. +.
T Consensus 117 L~L~~n~i~---~~~~l~~l~~L~-~L~l~~n----~l~~~--~~l~~l~~L~~L~L~~N~l------~----~~~~-l~ 175 (291)
T 1h6t_A 117 LSLEHNGIS---DINGLVHLPQLE-SLYLGNN----KITDI--TVLSRLTKLDTLSLEDNQI------S----DIVP-LA 175 (291)
T ss_dssp EECTTSCCC---CCGGGGGCTTCC-EEECCSS----CCCCC--GGGGGCTTCSEEECCSSCC------C----CCGG-GT
T ss_pred EECCCCcCC---CChhhcCCCCCC-EEEccCC----cCCcc--hhhccCCCCCEEEccCCcc------c----cchh-hc
Confidence 987655433 245566 77787 7777763 23222 4588999999999997762 1 1222 67
Q ss_pred CCCCcceEEEEeecCCCCC
Q 047511 452 PHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 452 ~~~~L~~L~L~~~~~~~~P 470 (471)
.+++|++|+|++|.++.+|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TCTTCCEEECCSSCCCBCG
T ss_pred CCCccCEEECCCCcCCCCh
Confidence 7889999999999988765
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=3.1e-13 Score=124.60 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=101.6
Q ss_pred cccCCCcceeee--------C-CCCcCCCCcceEEEecC-CCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhcccc
Q 047511 277 FFEFENLQTFLP--------L-PNSFGDLKHLRHLDLSE-TDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLK 345 (471)
Q Consensus 277 ~~~~~~l~~l~~--------~-p~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 345 (471)
+..+++|+.|.. + +..|.++++|++|++++ |.++.+| ..+.++++|++|++++| .+..+|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccc
Confidence 455666666532 2 23567778888888887 7887776 46777888888888874 4566776 777777
Q ss_pred CC---eeecCCCCCCccCccc-ccCCCCCc-ccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCC
Q 047511 346 LH---HLDNSDVDASEEIPKG-MGKLACLL-TLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNG 419 (471)
Q Consensus 346 L~---~L~l~~~~~~~~lP~~-~~~l~~L~-~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~ 419 (471)
|+ +|++++|..+..+|+. +..+++|+ +|++..+.... ...... ..+|+ .|.+.+.. .+....+..|.+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~-~L~L~~n~---~l~~i~~~~~~~ 202 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLD-AVYLNKNK---YLTVIDKDAFGG 202 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEE-EEECTTCT---TCCEECTTTTTT
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCCCCCC-EEEcCCCC---CcccCCHHHhhc
Confidence 77 8888877556666664 77788888 77664433221 111111 23344 44444311 233333455777
Q ss_pred c-ccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEee
Q 047511 420 K-KNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGY 464 (471)
Q Consensus 420 l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 464 (471)
+ ++|+.|+++.|.. ..++.. .+++|++|+++++
T Consensus 203 l~~~L~~L~l~~N~l----------~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSV----------TALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSBCCSEEECTTCCC----------CCCCCT--TCTTCSEEECTTC
T ss_pred cccCCcEEECCCCcc----------ccCChh--HhccCceeeccCc
Confidence 7 7888888876541 112222 3557777777654
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=142.66 Aligned_cols=164 Identities=23% Similarity=0.125 Sum_probs=106.7
Q ss_pred CCCcCCCCcceEEEecCCC-CCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc--cc
Q 047511 290 PNSFGDLKHLRHLDLSETD-IQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG--MG 365 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~--~~ 365 (471)
|..|.++++|++|++++|. +..+ |..++++++|++|++++|......|..++++++|++|++++|...+.+|.. ++
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 6677888888888888884 3455 667888888888888886555555778888888888888888444445654 77
Q ss_pred CCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCc--ccccceEEEecCCCCCCCCcch
Q 047511 366 KLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGK--KNLKTLLLQWTSNNGDSREPEI 442 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~ 442 (471)
++++|++|++..+..........++ +++|+ .|.+.+. .+.+..+..+..+ ++|+.|+++.|..
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N----~i~~~~~~~l~~l~~~~L~~L~L~~n~l--------- 186 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSN----QIFLVCEHELEPLQGKTLSFFSLAANSL--------- 186 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESS----CCCCCCSGGGHHHHHCSSCCCEECCSBS---------
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCC----cCCeeCHHHcccccCCccceEECCCCcc---------
Confidence 8888888877665543222224566 77777 7777652 2333334445544 6788888876652
Q ss_pred HHHhhccCCCCC------CcceEEEEeecCC
Q 047511 443 ETHVLDMLKPHQ------NLERFCISGYGGT 467 (471)
Q Consensus 443 ~~~~~~~l~~~~------~L~~L~L~~~~~~ 467 (471)
....+..+..++ .|++|+|++|.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCc
Confidence 122333333333 3899999888653
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=3e-12 Score=131.88 Aligned_cols=86 Identities=28% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCcc--CcccccCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEE--IPKGMGKL 367 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~--lP~~~~~l 367 (471)
..|.++++|++|++++|+++.+ |..++++++|++|++++| .+..+|.. .+++|++|++++| .+.. +|..++++
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNM 114 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCC-ccccccchhhhccC
Confidence 4567778888888888888766 567778888888888874 56677766 7788888888887 4443 56678888
Q ss_pred CCCcccCCeeecC
Q 047511 368 ACLLTLCSFVVGK 380 (471)
Q Consensus 368 ~~L~~L~~~~~~~ 380 (471)
++|++|++..+..
T Consensus 115 ~~L~~L~L~~n~l 127 (520)
T 2z7x_B 115 SQLKFLGLSTTHL 127 (520)
T ss_dssp TTCCEEEEEESSC
T ss_pred CcceEEEecCccc
Confidence 8888887665543
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=2.6e-12 Score=133.71 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=58.9
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCccccc--chhhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKM--CSDMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l--P~~~~~l~~ 345 (471)
.+.++++|+.|.. .|..|.++++|++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTK 147 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCc
Confidence 5667777777752 266788888888888888888888876 78888888888854 4443 478888888
Q ss_pred CCeeecCCC
Q 047511 346 LHHLDNSDV 354 (471)
Q Consensus 346 L~~L~l~~~ 354 (471)
|++|++++|
T Consensus 148 L~~L~L~~n 156 (562)
T 3a79_B 148 LTFLGLSAA 156 (562)
T ss_dssp CCEEEEECS
T ss_pred ccEEecCCC
Confidence 888888887
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=9.6e-13 Score=119.71 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=82.9
Q ss_pred CCCCcCCCCcceEEEecCCCCCcCCc--cccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCccc-c
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQILPE--SVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPKG-M 364 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~~-~ 364 (471)
+|..+. ..+++|++++|.++.+++ .+.++++|+.|++++|. +..+| ..+..+++|++|++++| .+..+|+. +
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 101 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMF 101 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGG
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHh
Confidence 455443 345788888888887632 47788888888888854 44444 46788888888888888 55666654 7
Q ss_pred cCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 365 GKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 365 ~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
..+++|++|++..+... ......+. +.+|+ .|.+.+ +.+.+..|..|..+++|+.|+|++|.
T Consensus 102 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSNRIT-CVGNDSFIGLSSVR-LLSLYD----NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTSCCC-CBCTTSSTTCTTCS-EEECTT----SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCCcCC-eECHhHcCCCccCC-EEECCC----CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77888888876544332 11123344 45555 455444 23333344556666666666666554
No 72
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=2.4e-12 Score=117.13 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=93.9
Q ss_pred eeCCCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-c
Q 047511 287 LPLPNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-M 364 (471)
Q Consensus 287 ~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~ 364 (471)
..+|..+. +.|+.|++++|.++.+|+ .+..+++|+.|++++|......|..+..+++|++|++++| .+..+|++ +
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f 100 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLF 100 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTT
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHc
Confidence 34455554 678899999999987765 7888999999999986555555788899999999999998 77788876 6
Q ss_pred cCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 365 GKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 365 ~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
..+++|++|++..+... ......+. +.+|+ .|.+.+ +.+....+..|..+++|+.|+|+.|.
T Consensus 101 ~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN-LLSLYD----NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCS----SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCC-EeCHHHcCCCCCCC-EEECCC----CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 78888888877655433 11123344 55555 555544 22333334456666677777776665
No 73
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.4e-12 Score=118.57 Aligned_cols=148 Identities=15% Similarity=0.190 Sum_probs=114.0
Q ss_pred eEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccC-cccccCCCCCcccCCee
Q 047511 300 RHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEI-PKGMGKLACLLTLCSFV 377 (471)
Q Consensus 300 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~l-P~~~~~l~~L~~L~~~~ 377 (471)
+.+++++++++.+|..+. .+|+.|++++| .+..+|. .+..+++|++|++++| .+..+ |..+..+++|++|++..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 578999999999998776 68999999996 5556654 7899999999999999 55555 66799999999998876
Q ss_pred ecCccccccc-ccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCC
Q 047511 378 VGKDIGSALQ-ELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQN 455 (471)
Q Consensus 378 ~~~~~~~~~~-~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (471)
+.... .+. .+. +.+|+ .|.+.+ +.+....+..|.++++|+.|+|++|. +....+..+..+++
T Consensus 90 N~l~~--l~~~~f~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 90 NKITE--LPKSLFEGLFSLQ-LLLLNA----NKINCLRVDAFQDLHNLNLLSLYDNK---------LQTIAKGTFSPLRA 153 (220)
T ss_dssp SCCCC--CCTTTTTTCTTCC-EEECCS----SCCCCCCTTTTTTCTTCCEEECCSSC---------CSCCCTTTTTTCTT
T ss_pred CcCCc--cCHhHccCCCCCC-EEECCC----CCCCEeCHHHcCCCCCCCEEECCCCc---------CCEECHHHHhCCCC
Confidence 65431 222 245 77777 777766 34555556789999999999999776 22222345777889
Q ss_pred cceEEEEeecCC
Q 047511 456 LERFCISGYGGT 467 (471)
Q Consensus 456 L~~L~L~~~~~~ 467 (471)
|++|+|++|++.
T Consensus 154 L~~L~L~~N~~~ 165 (220)
T 2v9t_B 154 IQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEeCCCCcC
Confidence 999999999864
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=2.3e-13 Score=131.98 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=115.3
Q ss_pred cccCCCcceeee---------CCCCcCCCCcceEEEecCCCCC-cCCccccCCCCCcEEEccCCCccc--ccchhhhccc
Q 047511 277 FFEFENLQTFLP---------LPNSFGDLKHLRHLDLSETDIQ-ILPESVNTLYNLRTLMLQKCNQLA--KMCSDMGNLL 344 (471)
Q Consensus 277 ~~~~~~l~~l~~---------~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~--~lP~~~~~l~ 344 (471)
+..+++|+.|.. +|..+..+++|++|++++|.++ ..|..++.+++|++|++++|..++ .+|..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 445666666642 3445677888888888888877 567778888888888888875555 3677778888
Q ss_pred cCCeeecCCCCCCcc--CcccccCCC-CCcccCCeeec--Ccccccccccc-cccccCceEEcccCCCCChhhhHHhhcC
Q 047511 345 KLHHLDNSDVDASEE--IPKGMGKLA-CLLTLCSFVVG--KDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLN 418 (471)
Q Consensus 345 ~L~~L~l~~~~~~~~--lP~~~~~l~-~L~~L~~~~~~--~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~ 418 (471)
+|++|++++|..+.. +|..+..++ +|++|++..+. .........+. +++|+ .|.+.+... +.+..+..+.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~---l~~~~~~~l~ 244 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-HLDLSDSVM---LKNDCFQEFF 244 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS-EEECTTCTT---CCGGGGGGGG
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC-EEeCCCCCc---CCHHHHHHHh
Confidence 888888888844432 566677788 88888776552 11122223344 66777 677765321 3334455677
Q ss_pred CcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEee
Q 047511 419 GKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGY 464 (471)
Q Consensus 419 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 464 (471)
++++|+.|++++|. ......+..+..+++|++|+++||
T Consensus 245 ~l~~L~~L~l~~~~--------~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCY--------DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCT--------TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCC--------CCCHHHHHHHhcCCCCCEEeccCc
Confidence 88888888887663 011122234566778888888877
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=1.3e-12 Score=136.45 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=120.7
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLT 372 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 372 (471)
+..|++|+.|++++|.+..+| .+..+++|+.|+|++| .+..+|. +..+++|+.|++++| .+..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 446778899999999999987 5899999999999995 5667776 999999999999999 777776 7999999999
Q ss_pred cCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCC
Q 047511 373 LCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLK 451 (471)
Q Consensus 373 L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 451 (471)
|++..+... .+..+. +.+|+ .|.+++. .+.+. ..+..+++|+.|+|+.|.. .. +++ +.
T Consensus 114 L~Ls~N~l~---~l~~l~~l~~L~-~L~Ls~N----~l~~l--~~l~~l~~L~~L~Ls~N~l---------~~-~~~-l~ 172 (605)
T 1m9s_A 114 LSLEHNGIS---DINGLVHLPQLE-SLYLGNN----KITDI--TVLSRLTKLDTLSLEDNQI---------SD-IVP-LA 172 (605)
T ss_dssp EECTTSCCC---CCGGGGGCTTCS-EEECCSS----CCCCC--GGGGSCTTCSEEECCSSCC---------CC-CGG-GT
T ss_pred EEecCCCCC---CCccccCCCccC-EEECCCC----ccCCc--hhhcccCCCCEEECcCCcC---------CC-chh-hc
Confidence 987665543 345667 78888 7877763 23332 4688999999999997761 11 222 77
Q ss_pred CCCCcceEEEEeecCCCCC
Q 047511 452 PHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 452 ~~~~L~~L~L~~~~~~~~P 470 (471)
.+++|+.|+|++|.+..+|
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TCTTCCEEECCSSCCCBCG
T ss_pred cCCCCCEEECcCCCCCCCh
Confidence 7899999999999988765
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=135.73 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=85.3
Q ss_pred ccccCCCcceeee--------CCCCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhcccc
Q 047511 276 PFFEFENLQTFLP--------LPNSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLK 345 (471)
Q Consensus 276 ~~~~~~~l~~l~~--------~p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~ 345 (471)
.+.++++|+.|.. .|..|.++++|++|++++|.++.+| ..++++++|++|++++| .+..+|. .++++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 4667777777753 2566888999999999999988775 67888999999999985 5666665 6888999
Q ss_pred CCeeecCCCCCCc--cCcccccCCCCCcccCCeeecCcccccccccc-cccc
Q 047511 346 LHHLDNSDVDASE--EIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHL 394 (471)
Q Consensus 346 L~~L~l~~~~~~~--~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L 394 (471)
|++|++++| .+. .+|..++++++|++|++..+... ......++ +.+|
T Consensus 126 L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 175 (570)
T 2z63_A 126 LKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175 (570)
T ss_dssp CCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTC
T ss_pred ccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhcc
Confidence 999999988 444 36888999999999987654432 11223444 5555
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=2e-12 Score=118.36 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=93.7
Q ss_pred eeeCCCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc
Q 047511 286 FLPLPNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG 363 (471)
Q Consensus 286 l~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~ 363 (471)
+..+|..+. ++|++|++++|.++.+ |..+.++++|+.|++++| .++.+|.. +..+++|++|++++| .+..+|+.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChh
Confidence 344565554 7899999999999977 667889999999999985 56777754 588999999999999 77777766
Q ss_pred -ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 364 -MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 364 -~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
+..+++|++|++..+... ..+..+. +.+|+ .|.+.+ +.+....+..+..+++|+.|+++.|.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLT--ELPRGIERLTHLT-HLALDQ----NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCS-EEECCS----SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCCccc--ccCcccccCCCCC-EEECCC----CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 678899998887554432 2223344 55555 555544 22333333446666666666666555
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=4.6e-12 Score=128.69 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=88.9
Q ss_pred ccccccCCCcceeee-------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccC
Q 047511 274 FEPFFEFENLQTFLP-------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKL 346 (471)
Q Consensus 274 ~~~~~~~~~l~~l~~-------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L 346 (471)
++.+..+++|+.|.. +|+ +.++++|++|++++|.++.+|+ ++++++|++|++++| .+..+|. +.++++|
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNL 136 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTC
T ss_pred CcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCC
Confidence 334445555555532 122 5555666666666666665554 556666666666653 4444443 5566666
Q ss_pred CeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccc
Q 047511 347 HHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKT 425 (471)
Q Consensus 347 ~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~ 425 (471)
++|++++| .+..+| .++.+++|++|.+.. . ...+..++ +.+|+ .|.+.+.. +... ..+..+++|++
T Consensus 137 ~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~---~~~~~~~~~l~~L~-~L~l~~n~----l~~~--~~l~~l~~L~~ 203 (466)
T 1o6v_A 137 NRLELSSN-TISDIS-ALSGLTSLQQLSFGN-Q---VTDLKPLANLTTLE-RLDISSNK----VSDI--SVLAKLTNLES 203 (466)
T ss_dssp SEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-S---CCCCGGGTTCTTCC-EEECCSSC----CCCC--GGGGGCTTCSE
T ss_pred CEEECCCC-ccCCCh-hhccCCcccEeecCC-c---ccCchhhccCCCCC-EEECcCCc----CCCC--hhhccCCCCCE
Confidence 66666665 444444 255566666665421 1 11122244 55555 55555422 1111 23666777777
Q ss_pred eEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCC
Q 047511 426 LLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 426 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
|++++|.. .. .+ .+..+++|++|++++|.+..+
T Consensus 204 L~l~~n~l---------~~-~~-~~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 204 LIATNNQI---------SD-IT-PLGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp EECCSSCC---------CC-CG-GGGGCTTCCEEECCSSCCCCC
T ss_pred EEecCCcc---------cc-cc-cccccCCCCEEECCCCCcccc
Confidence 77776541 10 11 144567888888888877654
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.31 E-value=2.5e-12 Score=136.96 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=67.1
Q ss_pred CcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccC
Q 047511 297 KHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLC 374 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~ 374 (471)
+++++|++++|.++.+|+ .++++++|++|++++|...+..|..++++++|++|++++| .+..+|+. ++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 456666666666665543 4566666666666664444444555666666666666666 45555553 56666666665
Q ss_pred CeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 375 SFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 375 ~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
+..+... ......++ +.+|+ .|.+.+ +.+.+..+..+.++++|++|++++|.
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLI-TLDLSH----NGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCC-EEECCS----SCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCCCccC-ccChhHccccCCCC-EEECCC----CcccccCchhhcccccCCEEEccCCc
Confidence 5443322 11112344 45555 454443 12223333445556666666665443
No 80
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=6.1e-12 Score=127.80 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=104.5
Q ss_pred cccCCCcceeeeC------CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeee
Q 047511 277 FFEFENLQTFLPL------PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLD 350 (471)
Q Consensus 277 ~~~~~~l~~l~~~------p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~ 350 (471)
+..+++|+.|... .+.+..+++|++|++++|.++.+++ +..+++|+.|++++| .+..+|. +..+++|+.|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEE
Confidence 4445555555422 1245566677777777777776654 667777777777774 4445554 67777777777
Q ss_pred cCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEE
Q 047511 351 NSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQ 429 (471)
Q Consensus 351 l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~ 429 (471)
+++| .+..+|+ ++.+++|++|++..+.... +..+. +++|+ .|.+.+.. +.+. ..+.++++|+.|+++
T Consensus 294 L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~-~L~l~~n~----l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 294 LNEN-QLEDISP-ISNLKNLTYLTLYFNNISD---ISPVSSLTKLQ-RLFFYNNK----VSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp CCSS-CCSCCGG-GGGCTTCSEEECCSSCCSC---CGGGGGCTTCC-EEECCSSC----CCCC--GGGTTCTTCCEEECC
T ss_pred cCCC-cccCchh-hcCCCCCCEEECcCCcCCC---chhhccCccCC-EeECCCCc----cCCc--hhhccCCCCCEEeCC
Confidence 7777 5555554 6677777777665544321 12244 66666 66665532 2222 357788888888887
Q ss_pred ecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 430 WTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+|. .....+ +..+++|++|++++|.++.+|
T Consensus 362 ~n~---------l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 362 HNQ---------ISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp SSC---------CCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCc---------cCccch--hhcCCCCCEEeccCCcccCCc
Confidence 665 111122 667788999999998887766
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.31 E-value=1e-11 Score=125.71 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=50.3
Q ss_pred ccccCCCcceeeeCC-----CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeee
Q 047511 276 PFFEFENLQTFLPLP-----NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLD 350 (471)
Q Consensus 276 ~~~~~~~l~~l~~~p-----~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~ 350 (471)
.+..+++|+.|...- -.++.+++|++|++++|.++.+| ++++++|++|++++| .+..+| ++.+++|++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEE
T ss_pred hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEE
Confidence 445555555554210 01555666666666666666554 566666666666664 344454 55666666666
Q ss_pred cCCCCCCccCcccccCCCCCcccCC
Q 047511 351 NSDVDASEEIPKGMGKLACLLTLCS 375 (471)
Q Consensus 351 l~~~~~~~~lP~~~~~l~~L~~L~~ 375 (471)
+++| .+..+| ++.+++|++|++
T Consensus 134 l~~N-~l~~l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 134 CARN-TLTEID--VSHNTQLTELDC 155 (457)
T ss_dssp CTTS-CCSCCC--CTTCTTCCEEEC
T ss_pred CCCC-ccceec--cccCCcCCEEEC
Confidence 6666 444443 455555555544
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.3e-12 Score=133.41 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=85.3
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchh-----------------hhccccCCeeecCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSD-----------------MGNLLKLHHLDNSD 353 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~-----------------~~~l~~L~~L~l~~ 353 (471)
..|..+++|++|+|++|.++.+++ ++.+++|++|++++| .+..+|.. ...+++|+.|++++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~ 129 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCS
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCC
Confidence 445556666666666666554443 555556666666553 34333321 12345566666666
Q ss_pred CCCCccCcccccCCCCCcccCCeeecCcccccccccc--cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEec
Q 047511 354 VDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK--LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWT 431 (471)
Q Consensus 354 ~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 431 (471)
|...+..|..++.+++|++|++..+... +..+..+. +++|+ .|.+++. .+.+. ..+..+++|+.|+|++|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~-~L~Ls~N----~l~~~--~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLE-HLNLQYN----FIYDV--KGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCC-EEECTTS----CCCEE--ECCCCCTTCCEEECCSS
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCccc-EEecCCC----ccccc--cccccCCCCCEEECCCC
Confidence 6222223445666666666665544332 11222332 45555 5555542 22222 12334677777777765
Q ss_pred CCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 432 SNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
. + ..+++.+..+++|++|+|++|.++.+|
T Consensus 202 ~---------l-~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 202 K---------L-AFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp C---------C-CEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred C---------C-CCCCHhHcCCCCccEEEecCCcCcccc
Confidence 5 1 124445666778888888888877665
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.30 E-value=8.6e-13 Score=138.91 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=41.2
Q ss_pred CcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
.|.++++|++|+|++|.|+.+|+ +|.++++|++|++++| .+..+|. .|.++++|++|++++| .+..+|+. +++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCc
Confidence 45555555555555555554432 3455555555555553 3334432 3455555555555555 44444432 45555
Q ss_pred CCcccCCeee
Q 047511 369 CLLTLCSFVV 378 (471)
Q Consensus 369 ~L~~L~~~~~ 378 (471)
+|++|++..+
T Consensus 149 ~L~~L~Ls~N 158 (635)
T 4g8a_A 149 TLKELNVAHN 158 (635)
T ss_dssp TCCEEECCSS
T ss_pred ccCeeccccC
Confidence 5555544433
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.1e-12 Score=133.87 Aligned_cols=150 Identities=14% Similarity=0.080 Sum_probs=107.8
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccccc-CCCCCcccCC
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMG-KLACLLTLCS 375 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~-~l~~L~~L~~ 375 (471)
++|++|++++|.++.+|. ..+++|+.|++++|...+..|..++.+++|++|++++|...+..|..+. .+++|++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 444555555555554443 2467899999999766666677899999999999999954444666675 7999999987
Q ss_pred eeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCC
Q 047511 376 FVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQ 454 (471)
Q Consensus 376 ~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (471)
..+... .+.... +++|+ .|.+++ +.+.+ .|..+..+++|+.|+|++|. +. .+|..+..++
T Consensus 177 s~N~l~---~~~~~~~l~~L~-~L~Ls~----N~l~~-~~~~~~~l~~L~~L~Ls~N~---------l~-~lp~~l~~l~ 237 (487)
T 3oja_A 177 QYNFIY---DVKGQVVFAKLK-TLDLSS----NKLAF-MGPEFQSAAGVTWISLRNNK---------LV-LIEKALRFSQ 237 (487)
T ss_dssp TTSCCC---EEECCCCCTTCC-EEECCS----SCCCE-ECGGGGGGTTCSEEECTTSC---------CC-EECTTCCCCT
T ss_pred CCCccc---cccccccCCCCC-EEECCC----CCCCC-CCHhHcCCCCccEEEecCCc---------Cc-ccchhhccCC
Confidence 665543 223344 67777 777765 33443 34458899999999998776 11 3677788889
Q ss_pred CcceEEEEeecCC
Q 047511 455 NLERFCISGYGGT 467 (471)
Q Consensus 455 ~L~~L~L~~~~~~ 467 (471)
+|+.|++++|++.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 9999999999876
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=123.71 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=116.7
Q ss_pred CCCCc--CCCCcceEEEecCCCCCcC-C----ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCcc--
Q 047511 289 LPNSF--GDLKHLRHLDLSETDIQIL-P----ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEE-- 359 (471)
Q Consensus 289 ~p~~~--~~l~~L~~L~l~~~~l~~l-p----~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~-- 359 (471)
.|..+ ..+++|++|++++|.++.. | ..+..+++|++|++++|......|..++.+++|++|++++|...+.
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence 35666 8899999999999998842 3 3455789999999999766555567888999999999999943332
Q ss_pred Cccc--ccCCCCCcccCCeeecCccc-ccccc-cc-cccccCceEEcccCCCCChhhhHHhhcCCc---ccccceEEEec
Q 047511 360 IPKG--MGKLACLLTLCSFVVGKDIG-SALQE-LK-LLHLHGALEISKLENVRDVSEAREAQLNGK---KNLKTLLLQWT 431 (471)
Q Consensus 360 lP~~--~~~l~~L~~L~~~~~~~~~~-~~~~~-l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l---~~L~~L~L~~~ 431 (471)
+|.. ++.+++|++|++..+..... ..... ++ +.+|+ .|.+++ +.+.+..|..+..+ ++|++|+|++|
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~-~L~Ls~----N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH-SLDLSH----NSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS-SEECTT----SCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC-EEECCC----CCCCccchhhHHhccCcCcCCEEECCCC
Confidence 4333 47899999998876654311 11111 24 67777 777776 33444445556665 69999999877
Q ss_pred CCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCCC
Q 047511 432 SNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCRI 471 (471)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P~ 471 (471)
.. . .+|..+. ++|++|+|++|.++.+|.
T Consensus 262 ~l---------~-~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 262 GL---------E-QVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CC---------C-SCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CC---------C-chhhhhc--CCCCEEECCCCcCCCCch
Confidence 61 1 3455553 699999999999988763
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.29 E-value=4.8e-12 Score=130.31 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=116.3
Q ss_pred CCCCcceEEEecCCCCCc-CCccccCCCCCcEEEccCCCccc--ccchhhhccccCCeeecCCCCCCccCccc-ccCCCC
Q 047511 294 GDLKHLRHLDLSETDIQI-LPESVNTLYNLRTLMLQKCNQLA--KMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLAC 369 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~--~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~ 369 (471)
..+++|++|++++|.++. +|..++.+++|++|++++|.... .+|..++.+++|++|++++|.....+|.+ +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 678899999999999985 78889999999999999965443 66778999999999999999443338876 788899
Q ss_pred CcccCCeeecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhcc
Q 047511 370 LLTLCSFVVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDM 449 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 449 (471)
|++|++..+... +..+..++ .+|+ .|.+++. .+. .+|..+.++++|++|++++|.. . .++..
T Consensus 401 L~~L~Ls~N~l~-~~~~~~l~-~~L~-~L~Ls~N----~l~-~ip~~~~~l~~L~~L~L~~N~l---------~-~l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILT-DTIFRCLP-PRIK-VLDLHSN----KIK-SIPKQVVKLEALQELNVASNQL---------K-SVPDG 462 (520)
T ss_dssp CCEEECCSSCCC-GGGGGSCC-TTCC-EEECCSS----CCC-CCCGGGGGCTTCCEEECCSSCC---------C-CCCTT
T ss_pred CCEEECcCCCCC-cchhhhhc-ccCC-EEECCCC----ccc-ccchhhhcCCCCCEEECCCCcC---------C-ccCHH
Confidence 999987655432 12222222 4666 6666652 233 4566677899999999987761 1 34444
Q ss_pred -CCCCCCcceEEEEeecCCC
Q 047511 450 -LKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 450 -l~~~~~L~~L~L~~~~~~~ 468 (471)
+..+++|++|++++|++..
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCcccEEECcCCCCcc
Confidence 7778899999999998763
No 87
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=2.4e-12 Score=115.89 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred CcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc-ccCCCCCccc
Q 047511 297 KHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTL 373 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L 373 (471)
++|++|++++|.++.+|. .+.++++|++|++++| .+..+|.. +..+++|++|++++| .+..+|+. ++.+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 467777777777776654 3566777777777764 44455443 466777777777777 55556554 5667777777
Q ss_pred CCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 374 CSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 374 ~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
++..+.... .....+. +.+|+ .|.+.+ +.+.+..+..+.++++|+.|+++.|.
T Consensus 106 ~L~~N~l~~-~~~~~~~~l~~L~-~L~l~~----N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTNQLQS-LPDGVFDKLTQLK-DLRLYQ----NQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCC-EEECCS----SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCcc-cCHhHhccCCcCC-EEECCC----CccceeCHHHhccCCCccEEEecCCC
Confidence 654443221 1111234 55555 555544 22223333345666677777776554
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.28 E-value=7e-12 Score=126.88 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=113.6
Q ss_pred ccccCCCcceeee-------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCe
Q 047511 276 PFFEFENLQTFLP-------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHH 348 (471)
Q Consensus 276 ~~~~~~~l~~l~~-------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~ 348 (471)
.+.++++|+.|.. +| .+..+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 4455666666642 24 6888999999999999999986 899999999999996 566676 899999999
Q ss_pred eecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceE
Q 047511 349 LDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLL 427 (471)
Q Consensus 349 L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 427 (471)
|++++| .+..+| ++.+++|++|++..+.... + .++ +.+|+ .|.+......... .+..+++|+.|+
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~---l-~l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L~~L~ 176 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE---I-DVSHNTQLT-ELDCHLNKKITKL------DVTPQTQLTTLD 176 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC---C-CCTTCTTCC-EEECTTCSCCCCC------CCTTCTTCCEEE
T ss_pred EECCCC-cCCeec--CCCCCcCCEEECCCCccce---e-ccccCCcCC-EEECCCCCccccc------ccccCCcCCEEE
Confidence 999999 777786 8999999999876554332 2 244 55555 5555543211111 244455555555
Q ss_pred EEecCCCCCCC------------CcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 428 LQWTSNNGDSR------------EPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 428 L~~~~~~~~~~------------~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
+++|....... .+.... + .+..+++|++|++++|.++.+|
T Consensus 177 ls~n~l~~l~l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 177 CSFNKITELDVSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CCSSCCCCCCCTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSCCC
T ss_pred CCCCccceeccccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccccC
Confidence 55443111000 000000 1 2556677888888887777665
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=124.89 Aligned_cols=170 Identities=12% Similarity=0.005 Sum_probs=121.1
Q ss_pred ccCCCcceeeeCCC------------CcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccc--cchh--h
Q 047511 278 FEFENLQTFLPLPN------------SFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAK--MCSD--M 340 (471)
Q Consensus 278 ~~~~~l~~l~~~p~------------~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--lP~~--~ 340 (471)
..+++|+.|...-. .+..+++|++|++++|.+..+| ..++++++|++|++++|...+. +|.. +
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 66777777753211 2345899999999999999775 6889999999999999765432 3333 3
Q ss_pred hccccCCeeecCCCCCCccCccc----ccCCCCCcccCCeeecCcccccccccc-c---ccccCceEEcccCCCCChhhh
Q 047511 341 GNLLKLHHLDNSDVDASEEIPKG----MGKLACLLTLCSFVVGKDIGSALQELK-L---LHLHGALEISKLENVRDVSEA 412 (471)
Q Consensus 341 ~~l~~L~~L~l~~~~~~~~lP~~----~~~l~~L~~L~~~~~~~~~~~~~~~l~-l---~~L~~~L~~~~l~~~~~~~~~ 412 (471)
+.+++|++|++++| .+..+|.. ++.+++|++|++..+.... ..+..++ + ++|+ .|.+++. .+. .
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~-~L~Ls~N----~l~-~ 265 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALN-SLNLSFA----GLE-Q 265 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCC-CEECCSS----CCC-S
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCC-EEECCCC----CCC-c
Confidence 68999999999999 77666653 5788999999887665442 1233344 3 5787 7777662 233 3
Q ss_pred HHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCC
Q 047511 413 REAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 413 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
+|..+. ++|+.|+|++|.. . .+ +.+..+++|++|+|++|+++.
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l---------~-~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRL---------N-RA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCC---------C-SC-CCTTSCCCCSCEECSSTTTSC
T ss_pred hhhhhc--CCCCEEECCCCcC---------C-CC-chhhhCCCccEEECcCCCCCC
Confidence 344453 7999999998872 1 11 225667899999999998864
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=7.2e-12 Score=130.33 Aligned_cols=87 Identities=25% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCc--ccccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIP--KGMGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP--~~~~~ 366 (471)
|..|.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. .+++|++|++++| .+..+| ..+++
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~ 144 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGN 144 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGG
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCC-CccccCchHhhcc
Confidence 35678888888888888888866 567888888888888884 56678876 7888888888888 555544 57888
Q ss_pred CCCCcccCCeeecC
Q 047511 367 LACLLTLCSFVVGK 380 (471)
Q Consensus 367 l~~L~~L~~~~~~~ 380 (471)
+++|++|++..+..
T Consensus 145 l~~L~~L~L~~n~l 158 (562)
T 3a79_B 145 LTKLTFLGLSAAKF 158 (562)
T ss_dssp CTTCCEEEEECSBC
T ss_pred cCcccEEecCCCcc
Confidence 88888887765443
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=5.1e-12 Score=123.94 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=109.1
Q ss_pred eeeCCCCcCCCCcceEEEecCCCCCcCCcc-cc-CCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcc
Q 047511 286 FLPLPNSFGDLKHLRHLDLSETDIQILPES-VN-TLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPK 362 (471)
Q Consensus 286 l~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~-~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~ 362 (471)
|..+|..+. ..++.|+|++|+++.+|.. +. ++++|+.|++++| .+..+| ..+..+++|++|++++| .+..+|+
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCH
Confidence 344566554 3589999999999988754 55 8999999999996 555555 56899999999999999 6777776
Q ss_pred c-ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhc---CCcccccceEEEecCCCCCC
Q 047511 363 G-MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQL---NGKKNLKTLLLQWTSNNGDS 437 (471)
Q Consensus 363 ~-~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~ 437 (471)
. +..+++|++|++..+.... .....+. +.+|+ .|.+.+. .+....+..+ ..+++|+.|+|++|..
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~-~L~L~~N----~l~~l~~~~~~~~~~l~~L~~L~L~~N~l---- 175 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQ-KLYLSQN----QISRFPVELIKDGNKLPKLMLLDLSSNKL---- 175 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCC-EEECCSS----CCCSCCGGGTC----CTTCCEEECCSSCC----
T ss_pred HHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCC-EEECCCC----cCCeeCHHHhcCcccCCcCCEEECCCCCC----
Confidence 4 8899999999876655431 1233455 67777 6766652 2322222233 5688888899987762
Q ss_pred CCcchHHHhhccCCCCCC--cceEEEEeecCC
Q 047511 438 REPEIETHVLDMLKPHQN--LERFCISGYGGT 467 (471)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~--L~~L~L~~~~~~ 467 (471)
..... ..+..++. |+.|+|++|++.
T Consensus 176 --~~l~~---~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 --KKLPL---TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CCCCH---HHHHHSCHHHHTTEECCSSCEE
T ss_pred --CccCH---HHhhhccHhhcceEEecCCCcc
Confidence 11111 12233333 478888888764
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=1.1e-12 Score=127.28 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=128.3
Q ss_pred CCCcCCCCcceEEEecCCCCCc--CCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCc--cCccccc
Q 047511 290 PNSFGDLKHLRHLDLSETDIQI--LPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASE--EIPKGMG 365 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~--~lP~~~~ 365 (471)
++.+..+++|++|++++|.++. +|..+..+++|+.|++++|......|..++.+++|++|++++|..+. .+|..+.
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 4557789999999999999883 88889999999999999987666889999999999999999995555 3777788
Q ss_pred CCCCCcccCCeee-cCcccccccccc-cc-cccCceEEcccCCCCChh-hhHHhhcCCcccccceEEEecCCCCCCCCcc
Q 047511 366 KLACLLTLCSFVV-GKDIGSALQELK-LL-HLHGALEISKLENVRDVS-EAREAQLNGKKNLKTLLLQWTSNNGDSREPE 441 (471)
Q Consensus 366 ~l~~L~~L~~~~~-~~~~~~~~~~l~-l~-~L~~~L~~~~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 441 (471)
++++|++|++..+ ..........+. ++ +|+ .|.+.+... .+. +..+..+.++++|++|++++|..
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~-------- 234 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLSGYRK--NLQKSDLSTLVRRCPNLVHLDLSDSVM-------- 234 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECCSCGG--GSCHHHHHHHHHHCTTCSEEECTTCTT--------
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeCCCcc--cCCHHHHHHHHhhCCCCCEEeCCCCCc--------
Confidence 9999999988766 433222334456 78 898 888876420 122 55667788899999999986641
Q ss_pred hHHHhhccCCCCCCcceEEEEeec
Q 047511 442 IETHVLDMLKPHQNLERFCISGYG 465 (471)
Q Consensus 442 ~~~~~~~~l~~~~~L~~L~L~~~~ 465 (471)
.....+..+..+++|++|+|++|.
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCC
Confidence 223455677788999999999985
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=8e-12 Score=111.50 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=96.7
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
.+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++++|......|..++.+++|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 5778888999999999777664 788889999999998765566788888999999999999844445677788899999
Q ss_pred ccCCeeec-Ccccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 372 TLCSFVVG-KDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 372 ~L~~~~~~-~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
+|++..+. .. .+..+. +++|+ .|.+.+.. +.+ .+ .+..+++|+.|++++|.
T Consensus 140 ~L~L~~n~~i~---~~~~l~~l~~L~-~L~l~~n~----i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAIT---DIMPLKTLPELK-SLNIQFDG----VHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCC---CCGGGGGCSSCC-EEECTTBC----CCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCcc---ccHhhcCCCCCC-EEECCCCC----CcC-hH-HhccCCCCCEEEeeCcc
Confidence 99876554 22 233566 77777 77776532 222 22 57888999999998775
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=1.5e-11 Score=112.60 Aligned_cols=109 Identities=24% Similarity=0.262 Sum_probs=78.2
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCcccccCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKGMGKL 367 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~~~~l 367 (471)
|..|.++++|++|+|++|.++.+|. .+.++++|++|++++| .+..+|.. +..+++|++|++++| .+..+|..+..+
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 134 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERL 134 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccccC
Confidence 5667888888888888888887764 4578888888888885 55556544 578888888888888 677888888888
Q ss_pred CCCcccCCeeecCcccccccccc-cccccCceEEcc
Q 047511 368 ACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~ 402 (471)
++|++|++..+.... -....+. +.+|+ .|.+.+
T Consensus 135 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~l~~ 168 (229)
T 3e6j_A 135 THLTHLALDQNQLKS-IPHGAFDRLSSLT-HAYLFG 168 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCC-EEECTT
T ss_pred CCCCEEECCCCcCCc-cCHHHHhCCCCCC-EEEeeC
Confidence 888888776554331 1113345 66666 666655
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=2.9e-12 Score=125.72 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCCcC-CCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccC-ccccc
Q 047511 290 PNSFG-DLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEI-PKGMG 365 (471)
Q Consensus 290 p~~~~-~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~l-P~~~~ 365 (471)
+..+. ++++|++|+|++|+|+.+| ..+.++++|+.|++++| .+..+|. .+..+++|++|++++| .+..+ |..+.
T Consensus 56 ~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~ 133 (361)
T 2xot_A 56 AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFE 133 (361)
T ss_dssp TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhC
Confidence 34455 7788888888888888765 45777888888888875 4445544 5677888888888888 55555 44577
Q ss_pred CCCCCcccCCeeecCccc--ccccccc-cccccCceEEcccCCCCChhhhHHhhcCCccc--ccceEEEecC
Q 047511 366 KLACLLTLCSFVVGKDIG--SALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKN--LKTLLLQWTS 432 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~--~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~--L~~L~L~~~~ 432 (471)
.+++|++|++..+..... ..+..+. +.+|+ .|.+.+ +.+....+..+..+++ |+.|+|+.|+
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~-~L~L~~----N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM-LLDLSS----NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCGGGTC----CTTCC-EEECCS----SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccCCEEECCCCcCCeeCHHHhcCcccCCcCC-EEECCC----CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 788888887655443321 1111113 55555 555554 2233333344555555 4677777665
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=4.2e-12 Score=125.65 Aligned_cols=134 Identities=18% Similarity=0.117 Sum_probs=71.9
Q ss_pred CCCCcceEEEecCCCCCc-----CCccccCCCCCcEEEccCCCccc----ccchhhhcc---------ccCCeeecCCCC
Q 047511 294 GDLKHLRHLDLSETDIQI-----LPESVNTLYNLRTLMLQKCNQLA----KMCSDMGNL---------LKLHHLDNSDVD 355 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lP~~~~~l---------~~L~~L~l~~~~ 355 (471)
..+++|++|+|++|.++. +|..+..+++|++|++++|.... .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 566777777777777664 56666777777777777754422 223333333 677777777663
Q ss_pred CC-ccCc---ccccCCCCCcccCCeeecCcccc---ccc-ccc-cccccCceEEcccCCCCChh----hhHHhhcCCccc
Q 047511 356 AS-EEIP---KGMGKLACLLTLCSFVVGKDIGS---ALQ-ELK-LLHLHGALEISKLENVRDVS----EAREAQLNGKKN 422 (471)
Q Consensus 356 ~~-~~lP---~~~~~l~~L~~L~~~~~~~~~~~---~~~-~l~-l~~L~~~L~~~~l~~~~~~~----~~~~~~l~~l~~ 422 (471)
.. ..+| ..+..+++|++|++..+...... .+. .+. +++|+ .|.+++ +.+. ..++..+..+++
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~-~L~Ls~----n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-VLDLQD----NTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC-EEECCS----SCCHHHHHHHHHHHGGGCTT
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc-EEECcC----CCCCcHHHHHHHHHHccCCC
Confidence 22 2344 34556666666665544332100 112 344 55555 555544 2222 344555556666
Q ss_pred ccceEEEecC
Q 047511 423 LKTLLLQWTS 432 (471)
Q Consensus 423 L~~L~L~~~~ 432 (471)
|+.|+|++|.
T Consensus 246 L~~L~L~~n~ 255 (386)
T 2ca6_A 246 LRELGLNDCL 255 (386)
T ss_dssp CCEEECTTCC
T ss_pred cCEEECCCCC
Confidence 6666665544
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=3.2e-12 Score=122.99 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=80.7
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc-cccCCCCCc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK-GMGKLACLL 371 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~ 371 (471)
+..+++|++|++++|.++.+|. .++|++|++++| .+..+|. ..+++|++|++++| .+..+|+ .++.+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEE
T ss_pred hhhcCCCCEEECcCCccccccC----CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCC
Confidence 3444444444444444443331 244444444443 2333332 23556677777777 4444443 466777777
Q ss_pred ccCCeeecCccccccccc-c-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhcc
Q 047511 372 TLCSFVVGKDIGSALQEL-K-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDM 449 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l-~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 449 (471)
+|++..+.... ..+..+ + +.+|+ .|.+++. .+.+. + ....+++|++|+|++|.. ..+++.
T Consensus 148 ~L~Ls~N~l~~-~~~~~~~~~l~~L~-~L~L~~N----~l~~~-~-~~~~l~~L~~L~Ls~N~l----------~~l~~~ 209 (317)
T 3o53_A 148 YLDLKLNEIDT-VNFAELAASSDTLE-HLNLQYN----FIYDV-K-GQVVFAKLKTLDLSSNKL----------AFMGPE 209 (317)
T ss_dssp EEECTTSCCCE-EEGGGGGGGTTTCC-EEECTTS----CCCEE-E-CCCCCTTCCEEECCSSCC----------CEECGG
T ss_pred EEECCCCCCCc-ccHHHHhhccCcCC-EEECCCC----cCccc-c-cccccccCCEEECCCCcC----------Ccchhh
Confidence 77665443321 112222 2 45555 5555542 22221 1 233467788888876651 124445
Q ss_pred CCCCCCcceEEEEeecCCCCC
Q 047511 450 LKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 450 l~~~~~L~~L~L~~~~~~~~P 470 (471)
+..+++|++|+|++|.++.+|
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEEC
T ss_pred hcccCcccEEECcCCcccchh
Confidence 667788999999988887765
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=1.1e-11 Score=130.34 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=82.1
Q ss_pred eeeCCCCcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc
Q 047511 286 FLPLPNSFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG 363 (471)
Q Consensus 286 l~~~p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~ 363 (471)
|..+|..+. +.+++|+|++|.|+.+| .+|.++++|++|++++| .+..+|+ .|.+|++|++|++++| .+..+|++
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG 118 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHH
Confidence 444555443 35777777777777765 35777777777777774 4555543 4677777777777777 66666654
Q ss_pred -ccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhh-hHHhhcCCcccccceEEEecC
Q 047511 364 -MGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSE-AREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 364 -~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 432 (471)
|.++++|++|++..+.... -....++ +++|+ .|.+.+. .+.. ..|..++.+++|+.|++++|.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~-~L~Ls~N----~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLK-ELNVAHN----LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCC-EEECCSS----CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCC-CChhhhhcCcccC-eeccccC----ccccCCCchhhccchhhhhhcccCcc
Confidence 6777777777665443321 1112244 55666 5655542 1211 234456667777777777664
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=111.16 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=78.3
Q ss_pred eEEEecCCCCCcCCccccCCCCCcEEEccCCCccccc-c-hhhhccccCCeeecCCCCCCccCcc-cccCCCCCcccCCe
Q 047511 300 RHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKM-C-SDMGNLLKLHHLDNSDVDASEEIPK-GMGKLACLLTLCSF 376 (471)
Q Consensus 300 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l-P-~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~~~ 376 (471)
+.+++++|.++.+|..+.. .++.|++++| .+..+ | ..+..+++|++|++++| .+..+|+ .++.+++|++|++.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 3566666666666655532 3466666663 34444 2 22566666666666666 4555544 46666666666654
Q ss_pred eecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCC
Q 047511 377 VVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQN 455 (471)
Q Consensus 377 ~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (471)
.+... ......++ +.+|+ .|.+++ +.+.+..+..|.++++|+.|+|++|. +....+..+..+++
T Consensus 90 ~N~l~-~~~~~~~~~l~~L~-~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 90 SNRLE-NVQHKMFKGLESLK-TLMLRS----NRITCVGNDSFIGLSSVRLLSLYDNQ---------ITTVAPGAFDTLHS 154 (220)
T ss_dssp SSCCC-CCCGGGGTTCSSCC-EEECTT----SCCCCBCTTSSTTCTTCSEEECTTSC---------CCCBCTTTTTTCTT
T ss_pred CCccC-ccCHhHhcCCcCCC-EEECCC----CcCCeECHhHcCCCccCCEEECCCCc---------CCEECHHHhcCCCC
Confidence 44332 11122244 55555 555544 23333444556666666666666444 22222445555666
Q ss_pred cceEEEEeecC
Q 047511 456 LERFCISGYGG 466 (471)
Q Consensus 456 L~~L~L~~~~~ 466 (471)
|++|+|++|++
T Consensus 155 L~~L~L~~N~l 165 (220)
T 2v70_A 155 LSTLNLLANPF 165 (220)
T ss_dssp CCEEECCSCCE
T ss_pred CCEEEecCcCC
Confidence 66666666654
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=1.7e-11 Score=110.21 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=111.2
Q ss_pred eEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCee
Q 047511 300 RHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFV 377 (471)
Q Consensus 300 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~ 377 (471)
+.++.+++.++.+|..+. .+|++|++++| .+..+|. .+..+++|++|++++| .+..+|.. +..+++|++|++..
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 567888999999997764 59999999996 5556665 4789999999999999 77788876 68999999998866
Q ss_pred ecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCc
Q 047511 378 VGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNL 456 (471)
Q Consensus 378 ~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L 456 (471)
+.... .....++ +.+|+ .|.+.+ +.+.+..+..+.++++|+.|+++.|. .....+..+..+++|
T Consensus 86 n~l~~-~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~l~~N~---------l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 86 NQLQS-LPNGVFDKLTQLK-ELALNT----NQLQSLPDGVFDKLTQLKDLRLYQNQ---------LKSVPDGVFDRLTSL 150 (208)
T ss_dssp SCCCC-CCTTTTTTCTTCC-EEECCS----SCCCCCCTTTTTTCTTCCEEECCSSC---------CSCCCTTTTTTCTTC
T ss_pred CcCCc-cCHhHhcCccCCC-EEEcCC----CcCcccCHhHhccCCcCCEEECCCCc---------cceeCHHHhccCCCc
Confidence 54431 1122355 77777 777765 33444445568899999999998776 221122346778899
Q ss_pred ceEEEEeecCCC
Q 047511 457 ERFCISGYGGTK 468 (471)
Q Consensus 457 ~~L~L~~~~~~~ 468 (471)
++|+|++|++..
T Consensus 151 ~~L~l~~N~~~~ 162 (208)
T 2o6s_A 151 QYIWLHDNPWDC 162 (208)
T ss_dssp CEEECCSCCBCC
T ss_pred cEEEecCCCeec
Confidence 999999998653
No 101
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=3.1e-11 Score=128.51 Aligned_cols=165 Identities=22% Similarity=0.175 Sum_probs=80.5
Q ss_pred CCCcCCCCcceEEEecCCCCC-cCC-ccccCCCCCcEEEccCCCcc--------------------------cccchhhh
Q 047511 290 PNSFGDLKHLRHLDLSETDIQ-ILP-ESVNTLYNLRTLMLQKCNQL--------------------------AKMCSDMG 341 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~-~lp-~~i~~l~~L~~L~l~~~~~~--------------------------~~lP~~~~ 341 (471)
|..+..+++|++|++++|.+. .+| ..+.++++|++|++++|... +.+|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 445555666666666666654 343 34555555555555554332 23444455
Q ss_pred ccccCCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCccc-------ccccccc-cccccCceEEcccCCCCChhhh
Q 047511 342 NLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIG-------SALQELK-LLHLHGALEISKLENVRDVSEA 412 (471)
Q Consensus 342 ~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~-------~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~ 412 (471)
.+++|++|++++| .+..+|+. +..+++|++|++..+..... ..+..++ +.+|+ .|.+.+ +.+...
T Consensus 478 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~----N~l~~i 551 (680)
T 1ziw_A 478 PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH-ILNLES----NGFDEI 551 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC-EEECCS----SCCCCC
T ss_pred cCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC-EEECCC----CCCCCC
Confidence 5555555555555 34444433 45555555555443322110 0011133 44444 444443 122222
Q ss_pred HHhhcCCcccccceEEEecCCCCCCCCcchHHHhh-ccCCCCCCcceEEEEeecCCCCC
Q 047511 413 REAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL-DMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 413 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.+..|.++++|+.|+|++|. .. .++ ..+..+++|++|+|++|.++.+|
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~---------l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNN---------LN-TLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSC---------CC-CCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CHHHcccccCcceeECCCCC---------CC-cCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 22345666666666666554 11 122 23455667777777777766554
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.22 E-value=3.4e-12 Score=126.35 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=124.2
Q ss_pred cccCCCcceeee------------CCCCcCCCCcceEEEecCCCCC----cCCccc-------cCCCCCcEEEccCCCcc
Q 047511 277 FFEFENLQTFLP------------LPNSFGDLKHLRHLDLSETDIQ----ILPESV-------NTLYNLRTLMLQKCNQL 333 (471)
Q Consensus 277 ~~~~~~l~~l~~------------~p~~~~~l~~L~~L~l~~~~l~----~lp~~i-------~~l~~L~~L~l~~~~~~ 333 (471)
+..+++|+.|.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 344566666653 2345778999999999998665 345554 68999999999997544
Q ss_pred c----ccchhhhccccCCeeecCCCCCCcc-----CcccccCC---------CCCcccCCeeecCcccccc---cccc-c
Q 047511 334 A----KMCSDMGNLLKLHHLDNSDVDASEE-----IPKGMGKL---------ACLLTLCSFVVGKDIGSAL---QELK-L 391 (471)
Q Consensus 334 ~----~lP~~~~~l~~L~~L~l~~~~~~~~-----lP~~~~~l---------~~L~~L~~~~~~~~~~~~~---~~l~-l 391 (471)
. .+|..+.++++|++|++++| .+.. ++..+..+ ++|++|++..+........ ..+. +
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 4 48889999999999999999 4432 33334444 8999998876654422222 3455 6
Q ss_pred ccccCceEEcccCCCC-ChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 392 LHLHGALEISKLENVR-DVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 392 ~~L~~~L~~~~l~~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
.+|+ .|.+.+..-.. ......+..+..+++|+.|+|++|.. .......++..+..+++|++|+|++|.+.
T Consensus 187 ~~L~-~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-----~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 187 RLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp TTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCcC-EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-----CcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 6777 77777632100 01113444789999999999997761 00112456667777788888888888764
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.21 E-value=5.8e-12 Score=121.21 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=121.7
Q ss_pred ccccCCCcceeeeCCC---CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecC
Q 047511 276 PFFEFENLQTFLPLPN---SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNS 352 (471)
Q Consensus 276 ~~~~~~~l~~l~~~p~---~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~ 352 (471)
.+..+++|+.|...-. .+..+++|++|++++|.++.+|.. .+++|+.|++++|......|..++.+++|++|+++
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 75 DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp EETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred hhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 3677788888764322 223458999999999999987654 37889999999965444445578899999999999
Q ss_pred CCCCCccC-cccc-cCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEE
Q 047511 353 DVDASEEI-PKGM-GKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQ 429 (471)
Q Consensus 353 ~~~~~~~l-P~~~-~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~ 429 (471)
+| .+..+ |..+ ..+++|++|++..+... .+.... +.+|+ .|.+++ +.+.+ .+..+..+++|+.|+++
T Consensus 153 ~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~l~~L~-~L~Ls~----N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 153 LN-EIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLK-TLDLSS----NKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp TS-CCCEEEGGGGGGGTTTCCEEECTTSCCC---EEECCCCCTTCC-EEECCS----SCCCE-ECGGGGGGTTCSEEECT
T ss_pred CC-CCCcccHHHHhhccCcCCEEECCCCcCc---ccccccccccCC-EEECCC----CcCCc-chhhhcccCcccEEECc
Confidence 99 55555 4445 47899999987655433 223334 66777 777765 22333 34458889999999998
Q ss_pred ecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 430 WTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+|. + ..+++.+..+++|++|+|++|++.
T Consensus 223 ~N~---------l-~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 223 NNK---------L-VLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TSC---------C-CEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCc---------c-cchhhHhhcCCCCCEEEccCCCcc
Confidence 776 1 136677888899999999999876
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=5.8e-11 Score=110.97 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=108.1
Q ss_pred cccccCCCcceeee-------CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCC
Q 047511 275 EPFFEFENLQTFLP-------LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLH 347 (471)
Q Consensus 275 ~~~~~~~~l~~l~~-------~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 347 (471)
..+..+++|+.|.. +| .+..+++|++|++++|.++.+|+ +.++++|+.|++++| .+..+|.... ++|+
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLS 109 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCC
T ss_pred cchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--Cccc
Confidence 34556666666642 23 67889999999999999999987 999999999999995 6777776433 8999
Q ss_pred eeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccce
Q 047511 348 HLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTL 426 (471)
Q Consensus 348 ~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L 426 (471)
+|++++| .+..+| .++.+++|++|++..+... .+..+. +.+|+ .|.+.+. .+.+. ..+..+++|+.|
T Consensus 110 ~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~---~~~~l~~l~~L~-~L~L~~N----~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 110 RLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLK---SIVMLGFLSKLE-VLDLHGN----EITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp EEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCC---BCGGGGGCTTCC-EEECTTS----CCCBC--TTSTTCCCCCEE
T ss_pred EEEccCC-ccCCCh-hhcCcccccEEECCCCcCC---CChHHccCCCCC-EEECCCC----cCcch--HHhccCCCCCEE
Confidence 9999999 777776 5899999999987655443 234566 77777 7777662 23333 568899999999
Q ss_pred EEEecC
Q 047511 427 LLQWTS 432 (471)
Q Consensus 427 ~L~~~~ 432 (471)
++++|.
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 999886
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=8.1e-12 Score=133.50 Aligned_cols=108 Identities=23% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
|..+..++.|+.|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++| .+..+|..+++|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCC
Confidence 44556666666666666666666666666666666666663 44466666666666666666666 44466666666666
Q ss_pred CcccCCeeecCcccccccccc-cccccCceEEcc
Q 047511 370 LLTLCSFVVGKDIGSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~ 402 (471)
|++|++..+... ..+..++ +.+|+ .|.+.+
T Consensus 295 L~~L~L~~N~l~--~lp~~~~~l~~L~-~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDNMVT--TLPWEFGNLCNLQ-FLGVEG 325 (727)
T ss_dssp CSEEECCSSCCC--CCCSSTTSCTTCC-CEECTT
T ss_pred CCEEECCCCCCC--ccChhhhcCCCcc-EEeCCC
Confidence 666655444322 2233344 55555 555544
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=1.9e-11 Score=106.00 Aligned_cols=134 Identities=19% Similarity=0.073 Sum_probs=90.3
Q ss_pred CCcceEEEecCCCCC--cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCcc-CcccccCCCCCcc
Q 047511 296 LKHLRHLDLSETDIQ--ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEE-IPKGMGKLACLLT 372 (471)
Q Consensus 296 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~-lP~~~~~l~~L~~ 372 (471)
.++|+.|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++| .+.. +|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 467888888888888 888888888888999988864 6666 67888888888888888 4444 6666667888888
Q ss_pred cCCeeecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhh----c
Q 047511 373 LCSFVVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVL----D 448 (471)
Q Consensus 373 L~~~~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~----~ 448 (471)
|++..+...... .+..+..+++|+.|++++|. .. .++ .
T Consensus 100 L~Ls~N~l~~~~----------------------------~~~~l~~l~~L~~L~l~~N~---------l~-~~~~~~~~ 141 (168)
T 2ell_A 100 LNLSGNKLKDIS----------------------------TLEPLKKLECLKSLDLFNCE---------VT-NLNDYRES 141 (168)
T ss_dssp EECBSSSCCSSG----------------------------GGGGGSSCSCCCEEECCSSG---------GG-TSTTHHHH
T ss_pred EeccCCccCcch----------------------------hHHHHhcCCCCCEEEeeCCc---------Cc-chHHHHHH
Confidence 865433221000 01235566677777776554 11 122 2
Q ss_pred cCCCCCCcceEEEEeecCCCCC
Q 047511 449 MLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 449 ~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.+..+++|++|++++|.+..+|
T Consensus 142 ~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HHTTCSSCCEETTEETTSCBCC
T ss_pred HHHhCccCcEecCCCCChhhcc
Confidence 4556667777777777776665
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=1.6e-13 Score=142.41 Aligned_cols=157 Identities=14% Similarity=0.087 Sum_probs=114.5
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCC-------------cccccchhhhcc-----------------
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCN-------------QLAKMCSDMGNL----------------- 343 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~-------------~~~~lP~~~~~l----------------- 343 (471)
...++|+.|+|++|+++.+|+.|+++++|+.|++++|. ..+..|..++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56778888888888888888888888888888886643 233334333222
Q ss_pred ---------------ccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCC
Q 047511 344 ---------------LKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVR 407 (471)
Q Consensus 344 ---------------~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~ 407 (471)
..|+.|++++| .+..+|. ++.+++|++|++..+... ..+..++ +.+|+ .|.+++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~Ls~----N 496 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLE-VLQASD----N 496 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCS----S
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCC-EEECCC----C
Confidence 14678889988 7778887 999999999988766544 3345677 78887 777776 2
Q ss_pred ChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHh-hccCCCCCCcceEEEEeecCCCCC
Q 047511 408 DVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHV-LDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 408 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.+.+ +| .++++++|+.|+|++|. +.... |..+..+++|++|+|++|+++.+|
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~---------l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNR---------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSC---------CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCC---------CCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3333 45 68999999999998776 22222 677888899999999999987765
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.4e-11 Score=104.64 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=50.3
Q ss_pred CcceEEEecCCCCC--cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCcc-CcccccCCCCCccc
Q 047511 297 KHLRHLDLSETDIQ--ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEE-IPKGMGKLACLLTL 373 (471)
Q Consensus 297 ~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~-lP~~~~~l~~L~~L 373 (471)
++|+.|++++|.++ .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++| .+.. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 56777777777776 66766677777777777764 44444 55667777777777777 4443 55555556666666
Q ss_pred CCe
Q 047511 374 CSF 376 (471)
Q Consensus 374 ~~~ 376 (471)
++.
T Consensus 94 ~ls 96 (149)
T 2je0_A 94 NLS 96 (149)
T ss_dssp ECT
T ss_pred ECC
Confidence 543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=2.4e-11 Score=118.60 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=51.8
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccch-hhhccccCCee-ecCCCCCCccCccc-
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHL-DNSDVDASEEIPKG- 363 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L-~l~~~~~~~~lP~~- 363 (471)
.+|..+ .++++.|+|++|+|+.+|+ .|.++++|++|++++|...+.+|. .|.++++|..+ .+++| .+..+|++
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLYINPEA 99 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCCEECTTS
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-cccccCchh
Confidence 345444 2456677777777776664 466677777777776555555554 34566665543 33334 55555443
Q ss_pred ccCCCCCcccCCeeec
Q 047511 364 MGKLACLLTLCSFVVG 379 (471)
Q Consensus 364 ~~~l~~L~~L~~~~~~ 379 (471)
+..+++|++|++..+.
T Consensus 100 f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG 115 (350)
T ss_dssp BCCCTTCCEEEEEEEC
T ss_pred hhhccccccccccccc
Confidence 5666677766655443
No 110
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=5.1e-11 Score=104.15 Aligned_cols=132 Identities=19% Similarity=0.151 Sum_probs=83.4
Q ss_pred CcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccc-cCCCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGM-GKLACL 370 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~-~~l~~L 370 (471)
.+.++.+|+.|++++|.++.+|......++|++|++++| .+..+ ..++.+++|++|++++| .+..+|+++ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 455677888888888888877653333348888888885 45555 56788888888888888 667777664 778888
Q ss_pred cccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHh----hcCCcccccceEEEecC
Q 047511 371 LTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREA----QLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 371 ~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~----~l~~l~~L~~L~L~~~~ 432 (471)
++|++..+.......+..+. +++|+ .|.+.+. .+. ..|. .+..+++|+.|+++.|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~-~L~l~~N----~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLT-YLCILRN----PVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCC-EEECCSS----GGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCC-EEEecCC----CCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 88876655433211122344 55555 5555441 111 1222 36667777777777654
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=9.2e-12 Score=111.19 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccc
Q 047511 309 IQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQE 388 (471)
Q Consensus 309 l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~ 388 (471)
++.+|..++.+++|++|++++| .+..+| .+..+++|++|++++| .+..+|..+..+++|++|++..+.... +..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~---l~~ 110 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIAS---LSG 110 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCC---HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCc---CCc
Confidence 3444445555555555555553 344454 4555555555555555 444455444444555555544433221 223
Q ss_pred cc-cccccCceEEcccCCCCChhhhH-HhhcCCcccccceEEEecCCCCCCCCcchHHHhhc----------cCCCCCCc
Q 047511 389 LK-LLHLHGALEISKLENVRDVSEAR-EAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLD----------MLKPHQNL 456 (471)
Q Consensus 389 l~-l~~L~~~L~~~~l~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~----------~l~~~~~L 456 (471)
++ +.+|+ .|.+.+. .+.... ...+..+++|+.|++++|. .....+. .+..+++|
T Consensus 111 ~~~l~~L~-~L~l~~N----~i~~~~~~~~l~~l~~L~~L~l~~N~---------l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 111 IEKLVNLR-VLYMSNN----KITNWGEIDKLAALDKLEDLLLAGNP---------LYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp HHHHHHSS-EEEESEE----ECCCHHHHHHHTTTTTCSEEEECSCH---------HHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred cccCCCCC-EEECCCC----cCCchhHHHHHhcCCCCCEEEecCCc---------cccccccccchHHHHHHHHHhCCCc
Confidence 34 44554 4544431 111111 1357777888888887554 3222222 25567788
Q ss_pred ceEEEEeecCC
Q 047511 457 ERFCISGYGGT 467 (471)
Q Consensus 457 ~~L~L~~~~~~ 467 (471)
++|+ +++++
T Consensus 177 ~~Ld--~~~i~ 185 (198)
T 1ds9_A 177 KKLD--GMPVD 185 (198)
T ss_dssp SEEC--CGGGT
T ss_pred EEEC--CcccC
Confidence 8776 55443
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=1.4e-10 Score=119.93 Aligned_cols=141 Identities=17% Similarity=0.108 Sum_probs=88.4
Q ss_pred CCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCccc
Q 047511 294 GDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTL 373 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L 373 (471)
..+++|++|++++|.++.+|. +++ +|+.|++++| .++.+|. .+++|++|++++| .+..+|. .+++|++|
T Consensus 97 ~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L 165 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVL 165 (571)
T ss_dssp CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEE
T ss_pred cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEE
Confidence 346777888888888877777 555 7888888874 5555776 6777888888887 6666776 56777777
Q ss_pred CCeeecCcccccccccccccccCceEEcccCCCCChhhhHHhhcCCcccc-------cceEEEecCCCCCCCCcchHHHh
Q 047511 374 CSFVVGKDIGSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNL-------KTLLLQWTSNNGDSREPEIETHV 446 (471)
Q Consensus 374 ~~~~~~~~~~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~~~~~~~ 446 (471)
++..+.... ++.++ .+|+ .|.+++. .+. .+|. +.+ +| +.|+|++|.. ..+
T Consensus 166 ~Ls~N~L~~---lp~l~-~~L~-~L~Ls~N----~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l----------~~l 222 (571)
T 3cvr_A 166 SVRNNQLTF---LPELP-ESLE-ALDVSTN----LLE-SLPA-VPV--RNHHSEETEIFFRCRENRI----------THI 222 (571)
T ss_dssp ECCSSCCSC---CCCCC-TTCC-EEECCSS----CCS-SCCC-CC----------CCEEEECCSSCC----------CCC
T ss_pred ECCCCCCCC---cchhh-CCCC-EEECcCC----CCC-chhh-HHH--hhhcccccceEEecCCCcc----------eec
Confidence 765544331 11133 4555 5555542 222 2233 333 55 8888876651 135
Q ss_pred hccCCCCCCcceEEEEeecCCC
Q 047511 447 LDMLKPHQNLERFCISGYGGTK 468 (471)
Q Consensus 447 ~~~l~~~~~L~~L~L~~~~~~~ 468 (471)
|+.+..+++|++|+|++|+++.
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCH
T ss_pred CHHHhcCCCCCEEEeeCCcCCC
Confidence 6666668888899998888753
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.08 E-value=2.6e-10 Score=115.22 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=66.9
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCe
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
++|++|++++|.++.+| .++++++|++|++++| .+..+|..+ .+|++|++++| .+..+| +++++++|++|++.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECC
Confidence 46777777777777776 4777777777777774 455566433 46777777777 555566 46777777777654
Q ss_pred eecCcccccccccc--cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 377 VVGKDIGSALQELK--LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 377 ~~~~~~~~~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.+.. ..++ ..+|+ .|.+.+. .+. .+| .++++++|+.|++++|.
T Consensus 204 ~N~l------~~l~~~~~~L~-~L~l~~n----~l~-~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 204 NNSL------KKLPDLPLSLE-SIVAGNN----ILE-ELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SSCC------SSCCCCCTTCC-EEECCSS----CCS-SCC-CCTTCTTCCEEECCSSC
T ss_pred CCcC------CcCCCCcCccc-EEECcCC----cCC-ccc-ccCCCCCCCEEECCCCc
Confidence 3322 1222 23444 4444432 111 222 25566666666666554
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.08 E-value=1.4e-10 Score=117.10 Aligned_cols=150 Identities=17% Similarity=0.093 Sum_probs=81.0
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCe
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
++|++|++++|.++.+|..+ .+|+.|++++| .+..+|.. .++|++|++++| .+..+| .++++++|++|++.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELP---QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCcccccc---CCCcEEECCCC-ccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECC
Confidence 57888888888888777543 56666666663 44444421 146777777776 555566 46677777777654
Q ss_pred eecCcccccccccc--cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCC-----------CCcchH
Q 047511 377 VVGKDIGSALQELK--LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDS-----------REPEIE 443 (471)
Q Consensus 377 ~~~~~~~~~~~~l~--l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-----------~~~~~~ 443 (471)
.+... .++ ..+|+ .|.+.+. .+.+ .| .++++++|+.|++++|...... ..+...
T Consensus 162 ~N~l~------~lp~~~~~L~-~L~L~~n----~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 162 NNSLK------KLPDLPPSLE-FIAAGNN----QLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp SSCCS------CCCCCCTTCC-EEECCSS----CCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CCcCc------ccCCCccccc-EEECcCC----cCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 33221 122 23444 4444431 1111 22 3555555555555554421100 011111
Q ss_pred HHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 444 THVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 444 ~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.++ .+..+++|++|++++|.+..+|
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCccc
Confidence 233 3666778888888888777665
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=101.57 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=57.0
Q ss_pred CCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcc-cccC
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPK-GMGK 366 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~ 366 (471)
+|..+. ++|+.|++++|.++.+|..+.++++|+.|++++|. +..+| ..|..+++|++|++++| .+..+|+ .+..
T Consensus 25 ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~ 100 (193)
T 2wfh_A 25 LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDG 100 (193)
T ss_dssp CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT
T ss_pred CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCC
Confidence 454442 46777777777777777777777777777777753 44443 45777777777777777 5555554 3677
Q ss_pred CCCCcccCCeee
Q 047511 367 LACLLTLCSFVV 378 (471)
Q Consensus 367 l~~L~~L~~~~~ 378 (471)
+++|++|++..+
T Consensus 101 l~~L~~L~L~~N 112 (193)
T 2wfh_A 101 LKSLRLLSLHGN 112 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 777777765443
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=1.5e-10 Score=102.73 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCCCcCCCCcceEEEecCCCCCcCCcc--ccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-cc
Q 047511 289 LPNSFGDLKHLRHLDLSETDIQILPES--VNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MG 365 (471)
Q Consensus 289 ~p~~~~~l~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~ 365 (471)
+|..+.. .|++|++++|.++.+|.. +..+++|++|++++|...+..|..+..+++|++|++++| .+..+|+. +.
T Consensus 23 ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 99 (192)
T 1w8a_A 23 IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFL 99 (192)
T ss_dssp CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSST
T ss_pred CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhc
Confidence 4544433 677777777777776653 677777777777775444444667777777777777777 55555543 66
Q ss_pred CCCCCcccCCeeec
Q 047511 366 KLACLLTLCSFVVG 379 (471)
Q Consensus 366 ~l~~L~~L~~~~~~ 379 (471)
.+++|++|++..+.
T Consensus 100 ~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQ 113 (192)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc
Confidence 77777777655443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=9.5e-11 Score=101.53 Aligned_cols=114 Identities=19% Similarity=0.134 Sum_probs=80.0
Q ss_pred CCCCCcEEEccCCCcc-cccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccccccccC
Q 047511 318 TLYNLRTLMLQKCNQL-AKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELKLLHLHG 396 (471)
Q Consensus 318 ~l~~L~~L~l~~~~~~-~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~l~~L~~ 396 (471)
..++|+.|++++|... +.+|..+..+++|++|++++| .+..+ ..++.+++|++|++..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l---------------- 83 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRI---------------- 83 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCC----------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcC----------------
Confidence 4478889999986533 388888888899999999988 56666 5577777777776433221
Q ss_pred ceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 397 ALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 397 ~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
.+..|..+..+++|+.|++++|.. .. ...+..+..+++|++|++++|+++.+|
T Consensus 84 -------------~~~~~~~~~~l~~L~~L~Ls~N~l------~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 84 -------------FGGLDMLAEKLPNLTHLNLSGNKL------KD--ISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp -------------CSCCCHHHHHCTTCCEEECBSSSC------CS--SGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred -------------chHHHHHHhhCCCCCEEeccCCcc------Cc--chhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 111233455678999999997761 11 112366788899999999999988776
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=2.6e-12 Score=114.83 Aligned_cols=129 Identities=23% Similarity=0.194 Sum_probs=102.4
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLAC 369 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~ 369 (471)
|..+..+++|++|++++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++| .+..+| .++.+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 447888999999999999999998 8999999999999995 67789998999999999999999 777787 6889999
Q ss_pred CcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHh----------hcCCcccccceE
Q 047511 370 LLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREA----------QLNGKKNLKTLL 427 (471)
Q Consensus 370 L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~----------~l~~l~~L~~L~ 427 (471)
|++|++..+.......+..+. +++|+ .|.+.+ +.+.+..|. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~-~L~l~~----N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLE-DLLLAG----NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCS-EEEECS----CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCC-EEEecC----CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999988776554322234566 77787 787776 334333332 378889999887
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=5.7e-10 Score=116.66 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc
Q 047511 295 DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK 362 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~ 362 (471)
.+++|++|++++|.++.+|. .+.+|+.|++++| .+..+|.. +++|++|++++| .+..+|.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCC
Confidence 34455555555555555554 3455555555553 34445542 356666666666 4455554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=3.8e-10 Score=117.01 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=62.2
Q ss_pred cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCee
Q 047511 298 HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFV 377 (471)
Q Consensus 298 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~ 377 (471)
.|++|++++|.++.+|. ++++++|+.|++++| .+..+|..++++++|++|++++| .+..+| .++++++|++|++..
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 47888888888888886 888888889988885 56688888888888888888888 666787 788888888886543
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.01 E-value=2.7e-10 Score=117.69 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=37.4
Q ss_pred CcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCe
Q 047511 297 KHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSF 376 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~ 376 (471)
++|++|++++|.|+.+| ..+++|++|++++| .+..+|. +.+ +|++|++++| .+..+|. .+++|++|++.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCC
Confidence 45566666666666555 33455666666653 3444555 443 5666666655 4444555 45555555543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=3.7e-10 Score=95.62 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=75.2
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCc--cccc
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIP--KGMG 365 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP--~~~~ 365 (471)
.+|..+..+++|++|++++|.++.+ ..++++++|++|++++|...+.+|..++.+++|++|++++| .+..+| ..++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHh
Confidence 4577789999999999999999988 78999999999999997555558988888999999999999 677665 6788
Q ss_pred CCCCCcccCCeee
Q 047511 366 KLACLLTLCSFVV 378 (471)
Q Consensus 366 ~l~~L~~L~~~~~ 378 (471)
.+++|++|++..+
T Consensus 111 ~l~~L~~L~l~~N 123 (149)
T 2je0_A 111 KLENLKSLDLFNC 123 (149)
T ss_dssp GCTTCCEEECTTC
T ss_pred hCCCCCEEeCcCC
Confidence 8888888876443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=8.5e-11 Score=125.62 Aligned_cols=118 Identities=17% Similarity=0.047 Sum_probs=80.3
Q ss_pred cCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccc
Q 047511 305 SETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGS 384 (471)
Q Consensus 305 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~ 384 (471)
..|.+...|..+..+.+|+.|+|++| .+..+|..+.++++|++|+|++| .+..+|..+++|++|++|++..+... .
T Consensus 209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~--~ 284 (727)
T 4b8c_D 209 IENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT--S 284 (727)
T ss_dssp -------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS--S
T ss_pred cccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC--c
Confidence 33445555778889999999999985 56789999999999999999999 67789998999999999987665543 3
Q ss_pred cccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 385 ALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 385 ~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
.+..++ +.+|+ .|.+.+. .+ ..+|..|+++++|+.|+|+.|.
T Consensus 285 lp~~~~~l~~L~-~L~L~~N----~l-~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 LPAELGSCFQLK-YFYFFDN----MV-TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSGGGGTTCS-EEECCSS----CC-CCCCSSTTSCTTCCCEECTTSC
T ss_pred cChhhcCCCCCC-EEECCCC----CC-CccChhhhcCCCccEEeCCCCc
Confidence 345566 67776 6666652 22 2445667788888888887665
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.98 E-value=1.1e-09 Score=114.47 Aligned_cols=74 Identities=19% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccC
Q 047511 295 DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLC 374 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~ 374 (471)
.+++|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|+.|++++| .+..+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEE
Confidence 46788888888888888887 6788888888884 6777776 6778888888888 67778874 47788887
Q ss_pred Ceeec
Q 047511 375 SFVVG 379 (471)
Q Consensus 375 ~~~~~ 379 (471)
+..+.
T Consensus 148 Ls~N~ 152 (622)
T 3g06_A 148 VSDNQ 152 (622)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 65543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=95.72 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=33.3
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc-cccCCCCCcccCCe
Q 047511 301 HLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK-GMGKLACLLTLCSF 376 (471)
Q Consensus 301 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~~~ 376 (471)
++++++++++.+|..+. .+|+.|++++ +.+..+|..+..+++|++|++++| .+..+|+ .+..+++|++|++.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence 44444555554444332 3455555554 234444444555555555555554 3333333 24445555555443
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=7.5e-10 Score=108.45 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=22.8
Q ss_pred hhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 415 AQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 415 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
..+..+++|+.|+|++|..... .......+.+.+..+++|++|++++|.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i--~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNM--SKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTC--CHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCccEEEeccCCcccc--CHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3344555555555554431000 11112333444555555666666655543
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=9.7e-11 Score=114.81 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=104.3
Q ss_pred CCcCCCC-cceEEEecCCCCCcC-CccccCC-----CCCcEEEccCCCcccccchhhhcc-----ccCCeeecCCCCCCc
Q 047511 291 NSFGDLK-HLRHLDLSETDIQIL-PESVNTL-----YNLRTLMLQKCNQLAKMCSDMGNL-----LKLHHLDNSDVDASE 358 (471)
Q Consensus 291 ~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~L~~L~l~~~~~~~~lP~~~~~l-----~~L~~L~l~~~~~~~ 358 (471)
..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|......|..+... ++|++|++++| .+.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCC
Confidence 3455677 889999999988854 5556554 889999999875444555544443 78999999988 555
Q ss_pred cCcc-cc----cC-CCCCcccCCeeecCcccccccc----cc-cc-cccCceEEcccCCCCChhhh----HHhhcCCc-c
Q 047511 359 EIPK-GM----GK-LACLLTLCSFVVGKDIGSALQE----LK-LL-HLHGALEISKLENVRDVSEA----REAQLNGK-K 421 (471)
Q Consensus 359 ~lP~-~~----~~-l~~L~~L~~~~~~~~~~~~~~~----l~-l~-~L~~~L~~~~l~~~~~~~~~----~~~~l~~l-~ 421 (471)
..+. .+ .. .++|++|++..+.... ..... +. +. +|+ .|.+++. .+.+. +...+..+ +
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~-~L~Ls~n----~l~~~~~~~l~~~l~~~~~ 196 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSSDELIQILAAIPANVN-SLNLRGN----NLASKNCAELAKFLASIPA 196 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCC-EEECTTS----CGGGSCHHHHHHHHHTSCT
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCH-HHHHHHHHHHhcCCcccc-EeeecCC----CCchhhHHHHHHHHHhCCC
Confidence 5544 23 33 3688888776554331 11112 22 32 676 7776652 33332 23344555 5
Q ss_pred cccceEEEecCCCCCCCCcchHHHhhccCCC-CCCcceEEEEeecCCCCC
Q 047511 422 NLKTLLLQWTSNNGDSREPEIETHVLDMLKP-HQNLERFCISGYGGTKCR 470 (471)
Q Consensus 422 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~P 470 (471)
+|++|+|++|.. .......+++.+.. +++|++|+|++|.+...+
T Consensus 197 ~L~~L~Ls~N~i-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 197 SVTSLDLSANLL-----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TCCEEECTTSCG-----GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCCC-----ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 899999987761 11111235555554 458999999999887643
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=2.5e-09 Score=94.78 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=44.6
Q ss_pred cCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCc
Q 047511 293 FGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLL 371 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~ 371 (471)
+..+++|++|+|++|.++.+ |..+.++++|++|++++|......|..+..+++|++|++++|...+..|..++.+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 55555566666666655544 44555556666666655433232333355555666666665522222344455555555
Q ss_pred ccCCeee
Q 047511 372 TLCSFVV 378 (471)
Q Consensus 372 ~L~~~~~ 378 (471)
+|++..+
T Consensus 130 ~L~L~~N 136 (192)
T 1w8a_A 130 SLNLASN 136 (192)
T ss_dssp EEECTTC
T ss_pred EEEeCCC
Confidence 5554433
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=3.5e-09 Score=92.39 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=52.7
Q ss_pred CcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc-ccCCCCCccc
Q 047511 297 KHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTL 373 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L 373 (471)
++|+.|++++|.++.+|. .+.++++|++|++++| .+..+|.. +..+++|++|++++| .+..+|+. +..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 567777777777776654 3567777777777774 44555543 567777777777777 55566654 5667777777
Q ss_pred CCeee
Q 047511 374 CSFVV 378 (471)
Q Consensus 374 ~~~~~ 378 (471)
++..+
T Consensus 106 ~l~~N 110 (177)
T 2o6r_A 106 ALDTN 110 (177)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 65433
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=4.3e-09 Score=91.63 Aligned_cols=90 Identities=23% Similarity=0.359 Sum_probs=74.2
Q ss_pred eeCCCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc-
Q 047511 287 LPLPNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG- 363 (471)
Q Consensus 287 ~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~- 363 (471)
..+|..+. ++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++| .+..+|++
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 34566554 7899999999999987 567899999999999995 67778776 588999999999999 77888886
Q ss_pred ccCCCCCcccCCeeecC
Q 047511 364 MGKLACLLTLCSFVVGK 380 (471)
Q Consensus 364 ~~~l~~L~~L~~~~~~~ 380 (471)
+..+++|++|++..+..
T Consensus 101 ~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTCTTCSEEECCSSCB
T ss_pred hccccCCCEEEeCCCCc
Confidence 88999999998766554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=6.3e-09 Score=90.69 Aligned_cols=121 Identities=16% Similarity=0.234 Sum_probs=81.8
Q ss_pred ccccCCCcceeeeCC------CCcCCCC-cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhh-hccccCC
Q 047511 276 PFFEFENLQTFLPLP------NSFGDLK-HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDM-GNLLKLH 347 (471)
Q Consensus 276 ~~~~~~~l~~l~~~p------~~~~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~-~~l~~L~ 347 (471)
.+.++++++.|.... +.+..+. +|++|++++|.++.+ +.++.+++|++|++++| .+..+|+.+ +.+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 344455555554211 2233444 888899999988877 67888888999999885 566777555 8888899
Q ss_pred eeecCCCCCCccCcc--cccCCCCCcccCCeeecCccccccc----ccc-cccccCceEEcc
Q 047511 348 HLDNSDVDASEEIPK--GMGKLACLLTLCSFVVGKDIGSALQ----ELK-LLHLHGALEISK 402 (471)
Q Consensus 348 ~L~l~~~~~~~~lP~--~~~~l~~L~~L~~~~~~~~~~~~~~----~l~-l~~L~~~L~~~~ 402 (471)
+|++++| .+..+|. .++.+++|++|++..+.... ... .+. +++|+ .|.+..
T Consensus 92 ~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~-~Ld~~~ 149 (176)
T 1a9n_A 92 ELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVR-VLDFQK 149 (176)
T ss_dssp EEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCS-EETTEE
T ss_pred EEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccc-eeCCCc
Confidence 9999888 7777887 68888888888776554331 112 144 66666 555444
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.82 E-value=3.9e-10 Score=114.02 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=96.5
Q ss_pred CCCcCCCCcceEEEecCCCCCc-CCccc-cCCC----CCcEEEccCCCcc----cccchhhhccccCCeeecCCCCCCcc
Q 047511 290 PNSFGDLKHLRHLDLSETDIQI-LPESV-NTLY----NLRTLMLQKCNQL----AKMCSDMGNLLKLHHLDNSDVDASEE 359 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~-lp~~i-~~l~----~L~~L~l~~~~~~----~~lP~~~~~l~~L~~L~l~~~~~~~~ 359 (471)
+..+..+++|++|++++|.++. .+..+ ..+. +|++|++++|... ..+|..+..+++|++|++++|. +..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 127 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGD 127 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-Cch
Confidence 3445667788888888887763 22222 2344 6888888886533 2567778888888888888883 332
Q ss_pred -Ccccc-----cCCCCCcccCCeeecCccc---ccccccc-cccccCceEEcccCCCCChhhhHHhhcC-----Cccccc
Q 047511 360 -IPKGM-----GKLACLLTLCSFVVGKDIG---SALQELK-LLHLHGALEISKLENVRDVSEAREAQLN-----GKKNLK 424 (471)
Q Consensus 360 -lP~~~-----~~l~~L~~L~~~~~~~~~~---~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~-----~l~~L~ 424 (471)
.+..+ ...++|++|++..+..... .....+. +++|+ .|.+.+. .+.+..+..+. ..++|+
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n----~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK-ELTVSNN----DINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC-EEECCSS----BCHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC-EEECcCC----CcchHHHHHHHHHHhcCCCCce
Confidence 22222 2255677777655433211 0122233 56666 6666652 23332222232 245788
Q ss_pred ceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 425 TLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 425 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
+|++++|.. .......++..+..+++|++|+|++|.+.
T Consensus 203 ~L~L~~n~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 203 ALKLESCGV-----TSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp EEECTTSCC-----BTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred EEEccCCCC-----cHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 888877651 11112234556667788999999888754
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.82 E-value=5.6e-10 Score=112.85 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=88.9
Q ss_pred CcCCCCcceEEEecCCCCCcC-----Cc-cccCCCCCcEEEccCCCcccc-----cchhhhccccCCeeecCCCCCCccC
Q 047511 292 SFGDLKHLRHLDLSETDIQIL-----PE-SVNTLYNLRTLMLQKCNQLAK-----MCSDMGNLLKLHHLDNSDVDASEEI 360 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~l-----p~-~i~~l~~L~~L~l~~~~~~~~-----lP~~~~~l~~L~~L~l~~~~~~~~l 360 (471)
.+..+++|+.|++++|.++.. ++ .+..+++|+.|++++| .++. +|..+.++++|++|++++| .+...
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 299 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDE 299 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchH
Confidence 344566777777777766532 12 2234667777777775 3333 5666667777777777777 33321
Q ss_pred -ccccc-----CCCCCcccCCeeecCcccc---cccccc-cccccCceEEcccCCCCChhhhHHhh----cCC-cccccc
Q 047511 361 -PKGMG-----KLACLLTLCSFVVGKDIGS---ALQELK-LLHLHGALEISKLENVRDVSEAREAQ----LNG-KKNLKT 425 (471)
Q Consensus 361 -P~~~~-----~l~~L~~L~~~~~~~~~~~---~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~----l~~-l~~L~~ 425 (471)
+..+. ..++|++|++..+...... ....+. +++|+ .|.+++. .+.+..+.. +.. .++|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n----~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL-ELQISNN----RLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-EEECCSS----BCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-EEEccCC----ccccccHHHHHHHHcCCCCceEE
Confidence 11222 2256777765544332110 122233 45666 6666542 233332222 222 567888
Q ss_pred eEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCC
Q 047511 426 LLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGT 467 (471)
Q Consensus 426 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 467 (471)
|++++|.. .......++..+..+++|++|+|++|++.
T Consensus 375 L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 375 LWLADCDV-----SDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECTTSCC-----CHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EECCCCCC-----ChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 88876651 11111255666666788888888888765
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=8.9e-09 Score=89.26 Aligned_cols=89 Identities=24% Similarity=0.318 Sum_probs=71.6
Q ss_pred eCCCCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc-c
Q 047511 288 PLPNSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG-M 364 (471)
Q Consensus 288 ~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~-~ 364 (471)
.+|..+. ++|++|+|++|.|+.+ |..+.++++|++|++++| .+..+|.. +..+++|++|++++| .+..+|+. +
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~ 98 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF 98 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 3465553 7889999999999987 567889999999999985 56677665 588999999999999 77788875 8
Q ss_pred cCCCCCcccCCeeecC
Q 047511 365 GKLACLLTLCSFVVGK 380 (471)
Q Consensus 365 ~~l~~L~~L~~~~~~~ 380 (471)
..+++|++|++..+..
T Consensus 99 ~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEEeCCCCC
Confidence 8899999998766554
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.75 E-value=6.6e-09 Score=101.21 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=70.9
Q ss_pred eEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCee
Q 047511 300 RHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFV 377 (471)
Q Consensus 300 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~ 377 (471)
+.++-++++++++|..+. .+++.|++++ +.++.+|. .|.++++|++|++++|...+.+|.+ +.++++|+++....
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888999999998873 6899999999 57888987 4899999999999999556778765 78888887653322
Q ss_pred -ecCcccccccccc-cccccCceEEcc
Q 047511 378 -VGKDIGSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 378 -~~~~~~~~~~~l~-l~~L~~~L~~~~ 402 (471)
+... .-....+. +.+|+ .|.+.+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~-~L~l~~ 113 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQ-YLLISN 113 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCC-EEEEEE
T ss_pred CCccc-ccCchhhhhccccc-cccccc
Confidence 1111 11123345 66666 666654
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=2e-08 Score=97.51 Aligned_cols=95 Identities=18% Similarity=0.062 Sum_probs=77.5
Q ss_pred eeeeCCCCcCCCCcceEEEecC-CCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcc
Q 047511 285 TFLPLPNSFGDLKHLRHLDLSE-TDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPK 362 (471)
Q Consensus 285 ~l~~~p~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~ 362 (471)
.|..+|. +..+++|+.|+|++ |.|+.+| ..|++|++|+.|+|++|...+..|..|.+|++|++|+|++| .+..+|+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCH
Confidence 3445788 99999999999996 9999887 57999999999999997544545567899999999999999 8888998
Q ss_pred cccCCCCCcccCCeeecCc
Q 047511 363 GMGKLACLLTLCSFVVGKD 381 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~~~~ 381 (471)
.+....+|+.|++..+...
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 7544444999987666544
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=3.3e-08 Score=86.13 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=74.8
Q ss_pred CCCcCCCCcceEEEecCCCCCcCCcc-ccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCCCCCccCccc-ccC
Q 047511 290 PNSFGDLKHLRHLDLSETDIQILPES-VNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDVDASEEIPKG-MGK 366 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~~~~~~lP~~-~~~ 366 (471)
+..+..+++|++|++++|.++.+|.. +.++++|+.|++++| .+..+|.. +..+++|++|++++| .+..+|+. +..
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 122 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDR 122 (177)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcC
Confidence 34578999999999999999988765 689999999999995 56666654 689999999999999 77888887 578
Q ss_pred CCCCcccCCeeecC
Q 047511 367 LACLLTLCSFVVGK 380 (471)
Q Consensus 367 l~~L~~L~~~~~~~ 380 (471)
+++|++|++..+..
T Consensus 123 l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 123 LTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcccCEEEecCCCe
Confidence 99999998765543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=5.1e-08 Score=84.75 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=75.1
Q ss_pred ceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCee
Q 047511 299 LRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFV 377 (471)
Q Consensus 299 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~ 377 (471)
-+.+++++|+++.+|..+. .+|+.|++++|...+..|..+.++++|++|++++| .+..+|++ +.++++|++|++..
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3689999999999999875 89999999996544444778999999999999999 88889887 58999999998765
Q ss_pred ecCccccccc-ccc-cccccCceEEcc
Q 047511 378 VGKDIGSALQ-ELK-LLHLHGALEISK 402 (471)
Q Consensus 378 ~~~~~~~~~~-~l~-l~~L~~~L~~~~ 402 (471)
+... ..+. .+. +.+|+ .|.+.+
T Consensus 91 N~l~--~l~~~~~~~l~~L~-~L~L~~ 114 (174)
T 2r9u_A 91 NHLK--SIPRGAFDNLKSLT-HIYLYN 114 (174)
T ss_dssp SCCC--CCCTTTTTTCTTCS-EEECCS
T ss_pred Cccc--eeCHHHhccccCCC-EEEeCC
Confidence 5433 1122 244 55555 555544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=5.3e-08 Score=84.33 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=75.8
Q ss_pred cceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCe
Q 047511 298 HLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSF 376 (471)
Q Consensus 298 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~ 376 (471)
..+.+++++|.++.+|..+. .+|++|++++|...+..|..+..+++|++|++++| .+..+|++ +..+++|++|++.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 45789999999999998774 89999999996444444777999999999999999 78888886 6899999999876
Q ss_pred eecCcccccccccc-cccccCceEEcc
Q 047511 377 VVGKDIGSALQELK-LLHLHGALEISK 402 (471)
Q Consensus 377 ~~~~~~~~~~~~l~-l~~L~~~L~~~~ 402 (471)
.+.... -....+. +.+|+ .|.+.+
T Consensus 87 ~N~l~~-~~~~~~~~l~~L~-~L~L~~ 111 (170)
T 3g39_A 87 DNQLKS-IPRGAFDNLKSLT-HIWLLN 111 (170)
T ss_dssp SSCCCC-CCTTTTTTCTTCC-EEECCS
T ss_pred CCccCE-eCHHHhcCCCCCC-EEEeCC
Confidence 554331 1112244 56666 565554
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.65 E-value=7.6e-08 Score=95.63 Aligned_cols=238 Identities=13% Similarity=-0.003 Sum_probs=119.4
Q ss_pred CCccchHHHHHHHHHHHhhh-----hHHHHHHH-H----HHHhhhHHHHHHHHHHHhhccCCCC-CCCcHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNKLAS-----EAILLFSL-Q----EQIQSDLKKWKKILVFIATADQPVN-GTDELGLLQEKLKNQ 69 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~-----~~~~~~~l-q----~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 69 (471)
|+||||||+++++.....+. ....+... . ..++..+. ..+ +.... ...+..++...+.+.
T Consensus 62 G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~l---~~~~~~~~~~~~~~~~~l~~~ 132 (412)
T 1w5s_A 62 GIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIV------RQT---GYPIQVRGAPALDILKALVDN 132 (412)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHH------HHH---TCCCCCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHH------HHh---CCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999998766431 11111111 1 11222222 111 11111 123455666667777
Q ss_pred cC--CCcEEEEEecCCCC------CcchhhhccccccCC---C--CCcEEEee---------------------------
Q 047511 70 MS--RKKFLLVLDDVWNE------NYSDWDSLSLPFEAG---A--PGCQIILT--------------------------- 109 (471)
Q Consensus 70 L~--~kr~LiVLDDVw~~------~~~~~~~l~~~~~~~---~--~gsriiiT--------------------------- 109 (471)
+. +++++|||||+|.- +...+..+...+... + ....+|+|
T Consensus 133 l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l 212 (412)
T 1w5s_A 133 LYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHL 212 (412)
T ss_dssp HHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEEC
T ss_pred HHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeee
Confidence 65 78999999999652 113333333333211 2 33345544
Q ss_pred ----CchhHHHHHhhh---cCCCCCCCCchHHHHHHHHHHHcC------CCchHHHHHHHH-Hc---CCCCC-CCcCCc-
Q 047511 110 ----KDDCLQVFTQHC---LGMRDFSMQQSLKDISEKIVIRCN------GLPLPAKTLVGL-LR---GENDP-LVSCDI- 170 (471)
Q Consensus 110 ----~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~~~iv~~c~------GlPLal~~~g~~-L~---~~~~~-~~~~~i- 170 (471)
.++++++|...+ |... .. -.+....+++.|+ |.|..+..+... .. ..... -....+
T Consensus 213 ~~l~~~e~~~ll~~~~~~~~~~~--~~---~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 213 PAYKSRELYTILEQRAELGLRDT--VW---EPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTT--SC---CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC--CC---ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 234455554332 2111 01 1356677888899 999655444332 21 11111 011111
Q ss_pred --------hhHHhhhccCCChhhHHHHhHhccCC--CCccccHHHHHHHHH-----HCCCCCCCCchhHHHHHHHHHHHH
Q 047511 171 --------IPALRLSYHYLSPNLKRCFAYCSLFP--KNYEFHEEEVTLLWM-----AEGFPYHIDTKEQIQDLGHKFLHE 235 (471)
Q Consensus 171 --------~~~l~~sy~~L~~~~k~~fl~~~~f~--~~~~i~~~~l~~~w~-----~~g~~~~~~~~~~~~~~~~~~l~~ 235 (471)
...+..++..||+..+.++..++.+. .+..++...+...+. ..|. .+. .......++++
T Consensus 288 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~ 361 (412)
T 1w5s_A 288 KAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIYLKH 361 (412)
T ss_dssp HHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHHHHH
Confidence 23345566889999999999888754 233455555444332 1221 111 12345567999
Q ss_pred HHhcCcccccC---CCCCccchhhhH
Q 047511 236 LYSRSSFQQSS---SDPCRFLMHDLI 258 (471)
Q Consensus 236 L~~~~ll~~~~---~~~~~~~mhdlv 258 (471)
|.+.+++.... +...+|++|.+.
T Consensus 362 L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 362 LTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHTTSEEEECC-------CCEEEEC
T ss_pred HHhCCCEEeecccCCCCCceeEEEeC
Confidence 99999998643 234456666554
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.64 E-value=1.5e-08 Score=105.84 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=92.4
Q ss_pred CCCCcceEEEecCCCCC-----cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCC---ccCccccc
Q 047511 294 GDLKHLRHLDLSETDIQ-----ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDAS---EEIPKGMG 365 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~---~~lP~~~~ 365 (471)
..+++|+.|++++|.++ .++..+.++++|+.|++++| .+..+|..+..+++|+.|+++.+... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 35677777777777765 33444566777777777774 45557777777777777777643222 23334566
Q ss_pred CCCCCcccCCeeecCcccccccccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHH
Q 047511 366 KLACLLTLCSFVVGKDIGSALQELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIET 444 (471)
Q Consensus 366 ~l~~L~~L~~~~~~~~~~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 444 (471)
.+++|+.|++..+. .......++ +.+|+ .|.+.+.. + ........+.++++|++|+++.+- ...
T Consensus 268 ~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~-~L~Ls~~~-l--~~~~~~~~~~~~~~L~~L~L~~~~---------~~~ 332 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG--PNEMPILFPFAAQIR-KLDLLYAL-L--ETEDHCTLIQKCPNLEVLETRNVI---------GDR 332 (592)
T ss_dssp CCTTCCEEEETTCC--TTTGGGGGGGGGGCC-EEEETTCC-C--CHHHHHHHHTTCTTCCEEEEEGGG---------HHH
T ss_pred ccccccccCccccc--hhHHHHHHhhcCCCc-EEecCCCc-C--CHHHHHHHHHhCcCCCEEeccCcc---------CHH
Confidence 66777776543321 122223344 67777 77777633 1 122233446888899999997221 223
Q ss_pred HhhccCCCCCCcceEEEEe
Q 047511 445 HVLDMLKPHQNLERFCISG 463 (471)
Q Consensus 445 ~~~~~l~~~~~L~~L~L~~ 463 (471)
.+......+++|++|+|++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp HHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHhCCCCCEEEeec
Confidence 3333334577899999993
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.61 E-value=2.4e-08 Score=104.19 Aligned_cols=156 Identities=18% Similarity=0.072 Sum_probs=87.5
Q ss_pred CCCcceEEEecCCCCCcCCccccCCCCCcEEEccCC--------------------------CcccccchhhhccccCCe
Q 047511 295 DLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKC--------------------------NQLAKMCSDMGNLLKLHH 348 (471)
Q Consensus 295 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~--------------------------~~~~~lP~~~~~l~~L~~ 348 (471)
++++|+.|++++|.+..+|..+.++++|+.|+++++ .....+|..+..+++|++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 455666666666655555555555555555555421 234556777777888888
Q ss_pred eecCCCCCCcc--CcccccCCCCCcccCCeeecCccccccccc-c-cccccCceEEccc--C-----CCCChhh-hHHhh
Q 047511 349 LDNSDVDASEE--IPKGMGKLACLLTLCSFVVGKDIGSALQEL-K-LLHLHGALEISKL--E-----NVRDVSE-AREAQ 416 (471)
Q Consensus 349 L~l~~~~~~~~--lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l-~-l~~L~~~L~~~~l--~-----~~~~~~~-~~~~~ 416 (471)
|++++|. +.. ++..+..+++|++|++. .... ...+..+ . +++|+ .|.+.+- . ..+...+ ..+..
T Consensus 298 L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~-~~~l~~~~~~~~~L~-~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 298 LDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIG-DRGLEVLAQYCKQLK-RLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp EEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGH-HHHHHHHHHHCTTCC-EEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred EecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccC-HHHHHHHHHhCCCCC-EEEeecCccccccccccCccCHHHHHHH
Confidence 8888884 322 22235678888888765 1111 1223333 3 56777 7777730 0 0112222 23333
Q ss_pred cCCcccccceEEEecCCCCCCCCcchHHHhhccCCC-CCCcceEEEEe
Q 047511 417 LNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKP-HQNLERFCISG 463 (471)
Q Consensus 417 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~ 463 (471)
...+++|++|+++++. .....+..+.. +++|++|++++
T Consensus 374 ~~~~~~L~~L~l~~~~---------l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSD---------ITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHCTTCSEEEEEESC---------CCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HhhCccCeEEEeecCC---------ccHHHHHHHHhhCCCCcEEEEee
Confidence 4567889999996554 22333444433 67899999974
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.44 E-value=7.7e-08 Score=100.33 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCCcceEEEecCC-CCCc--CCccccCCCCCcEEEccCCCcccc----cchhhhccccCCeeecCCC
Q 047511 295 DLKHLRHLDLSET-DIQI--LPESVNTLYNLRTLMLQKCNQLAK----MCSDMGNLLKLHHLDNSDV 354 (471)
Q Consensus 295 ~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~----lP~~~~~l~~L~~L~l~~~ 354 (471)
.+++|+.|++++| .++. ++..+.++++|+.|++++|..... ++.-...+++|+.|++++|
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 3556666666655 3432 333344556666666665542111 2222224456666666655
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.42 E-value=3.7e-07 Score=88.36 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcCCCCC-CC----cCCchhHHhhhccCC---ChhhHHHHhHhccCCCCccccHHHH
Q 047511 135 DISEKIVIRCNGLPLPAKTLVGLLRGENDP-LV----SCDIIPALRLSYHYL---SPNLKRCFAYCSLFPKNYEFHEEEV 206 (471)
Q Consensus 135 ~~~~~iv~~c~GlPLal~~~g~~L~~~~~~-~~----~~~i~~~l~~sy~~L---~~~~k~~fl~~~~f~~~~~i~~~~l 206 (471)
+.+.++++.|+|.|+++..++..+...... .. ...+...+...+..+ ++..+..+..+|+ + ..+...+
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHH
Confidence 467789999999999999998765331110 00 001111222223334 6788888888887 2 2344555
Q ss_pred HHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccCCCCCccc-hhhhHHHHHH
Q 047511 207 TLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSSSDPCRFL-MHDLINDLAQ 263 (471)
Q Consensus 207 ~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~-mhdlv~~~a~ 263 (471)
........ . .. .......+++.|.+.+++...+ ..|+ .|.+++++.+
T Consensus 302 ~~~~~~~~-~-~~-----~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKG-T-KI-----PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTT-C-CC-----CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHh-C-CC-----CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 44332211 0 10 1234567899999999998653 2344 4677777653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=1.5e-08 Score=99.32 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred CcceEEEecCCCCCc--CCccccCCCCCcEEEccCCCcccccchhhh-----ccccCCeeecCCCCCCcc-----Ccccc
Q 047511 297 KHLRHLDLSETDIQI--LPESVNTLYNLRTLMLQKCNQLAKMCSDMG-----NLLKLHHLDNSDVDASEE-----IPKGM 364 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~-----~l~~L~~L~l~~~~~~~~-----lP~~~ 364 (471)
++|+.|+|++|.++. +..-...+.+|+.|++++|.....-...+. ..++|+.|++++| .+.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 456666666665542 111222344566666666432211111221 2345666666666 3322 33334
Q ss_pred cCCCCCcccCCeee
Q 047511 365 GKLACLLTLCSFVV 378 (471)
Q Consensus 365 ~~l~~L~~L~~~~~ 378 (471)
..+++|++|++..+
T Consensus 180 ~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 180 AGNTSVTHLSLLHT 193 (372)
T ss_dssp HTCSSCCEEECTTS
T ss_pred hcCCCcCEEeCCCC
Confidence 45555555554433
No 146
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.38 E-value=9.2e-07 Score=85.75 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=64.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHcCCCCC-CCcC----CchhHHhhhcc-------CCChhhHHHHhHhccCCCCccccHHH
Q 047511 138 EKIVIRCNGLPLPAKTLVGLLRGENDP-LVSC----DIIPALRLSYH-------YLSPNLKRCFAYCSLFPKNYEFHEEE 205 (471)
Q Consensus 138 ~~iv~~c~GlPLal~~~g~~L~~~~~~-~~~~----~i~~~l~~sy~-------~L~~~~k~~fl~~~~f~~~~~i~~~~ 205 (471)
.+|++.|+|.|+++..++..+...... .+.. .+...+...+. .|++..+..+..+|+ +. +...
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~ 307 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSD 307 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHH
Confidence 678999999999999998876532111 0000 11111211112 578888999999987 22 4444
Q ss_pred HHHHHH-HCCCCCCCCchhHHHHHHHHHHHHHHhcCcccccCCCCCccc-hhhhHHHH
Q 047511 206 VTLLWM-AEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQSSSDPCRFL-MHDLINDL 261 (471)
Q Consensus 206 l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~-mhdlv~~~ 261 (471)
+..... ..|. . ........+++.|.+.+++...+ ..|+ .|++++++
T Consensus 308 l~~~~~~~~g~--~-----~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 308 VKRALELEEGI--E-----ISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHCS--C-----CCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHHHHHhcCC--C-----CCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 433211 1121 0 01234567899999999998653 2355 57787765
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.35 E-value=2.4e-07 Score=96.57 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=44.8
Q ss_pred CCCcceEEEecCCC--CC--cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCC------CccCcccc
Q 047511 295 DLKHLRHLDLSETD--IQ--ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDA------SEEIPKGM 364 (471)
Q Consensus 295 ~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~------~~~lP~~~ 364 (471)
.+++|+.|++++|. +. .++..+.++++|+.|++++|..+..+|..+.++++|+.|+++.+.. +..++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 55677777777665 22 1222234567777777777666666676677777777776554421 22333344
Q ss_pred cCCCCCccc
Q 047511 365 GKLACLLTL 373 (471)
Q Consensus 365 ~~l~~L~~L 373 (471)
.++++|+.|
T Consensus 262 ~~~~~L~~L 270 (594)
T 2p1m_B 262 SGCKELRCL 270 (594)
T ss_dssp HTCTTCCEE
T ss_pred hcCCCcccc
Confidence 555555555
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=2.5e-07 Score=90.01 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=70.7
Q ss_pred CCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccccc--CCCCCcccCCeeecCc--cccccc
Q 047511 312 LPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMG--KLACLLTLCSFVVGKD--IGSALQ 387 (471)
Q Consensus 312 lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~--~l~~L~~L~~~~~~~~--~~~~~~ 387 (471)
++..+..+++|+.|++++|..+ .+|. + .+++|++|++..|.........++ .+++|++|++...... ....+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444556667777777665322 3333 2 366777777766521111111222 5667777655321110 000011
Q ss_pred c----c--c-cccccCceEEcccCCCCChhhhHHhhc---CCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcc
Q 047511 388 E----L--K-LLHLHGALEISKLENVRDVSEAREAQL---NGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLE 457 (471)
Q Consensus 388 ~----l--~-l~~L~~~L~~~~l~~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 457 (471)
. + + +++|+ .|.+.+.. +.+..+..+ ..+++|++|+|++|.. ...-...++..+.++++|+
T Consensus 241 ~l~~~l~~~~~p~Lr-~L~L~~~~----i~~~~~~~la~a~~~~~L~~LdLs~n~L-----~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLK-WLGIVDAE----EQNVVVEMFLESDILPQLETMDISAGVL-----TDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp GTGGGSCTTTCTTCC-EEEEESCT----THHHHHHHHHHCSSGGGCSEEECCSSCC-----BHHHHHHHHTTHHHHTTCS
T ss_pred HHHHHHhcCCCCCcC-EEeCCCCC----CchHHHHHHHhCccCCCCCEEECCCCCC-----ChHHHHHHHhhcccCCcce
Confidence 1 1 2 45666 66665422 222111112 3577888888876651 1111223455556677888
Q ss_pred eEEEEeecCC
Q 047511 458 RFCISGYGGT 467 (471)
Q Consensus 458 ~L~L~~~~~~ 467 (471)
.|+|++|.++
T Consensus 311 ~L~L~~n~i~ 320 (362)
T 2ra8_A 311 FINMKYNYLS 320 (362)
T ss_dssp EEECCSBBCC
T ss_pred EEECCCCcCC
Confidence 8888887654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.2e-06 Score=84.97 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=66.6
Q ss_pred EEEecCC-CCCcCCccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCcc-cccCCCCCcccCCee
Q 047511 301 HLDLSET-DIQILPESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPK-GMGKLACLLTLCSFV 377 (471)
Q Consensus 301 ~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~~~~ 377 (471)
.++.+++ +++.+|. +..+.+|+.|+|++++.++.+| ..|+.|++|++|+|++| .+..+|+ .|++|++|++|++..
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999999 9999999999999745676666 57999999999999999 6777766 589999999999876
Q ss_pred ecCc
Q 047511 378 VGKD 381 (471)
Q Consensus 378 ~~~~ 381 (471)
+...
T Consensus 90 N~l~ 93 (347)
T 2ifg_A 90 NALE 93 (347)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 6543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=8.5e-07 Score=85.34 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=55.1
Q ss_pred cccCCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccccc---cccccCceE-EcccCCCCChhhhHHhhc
Q 047511 343 LLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQELK---LLHLHGALE-ISKLENVRDVSEAREAQL 417 (471)
Q Consensus 343 l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~---l~~L~~~L~-~~~l~~~~~~~~~~~~~l 417 (471)
+++|+.+++++| .+..+|+. |.++++|+.|.+..+ +..++ +..+. .|. ...++. ++....+.+|
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-------i~~I~~~aF~~~~-~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-------LKTIGQRVFSNCG-RLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCT-TCCEEEEECT--TCCEECTTTT
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-------cceehHHHhhCCh-hccEEEEEcc--cceEEchhhh
Confidence 678888888887 67778875 778888888865321 22222 22222 222 222221 2223334567
Q ss_pred CCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEE
Q 047511 418 NGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFC 460 (471)
Q Consensus 418 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 460 (471)
.+|++|+.|+++.|. ...--...+..+++|++++
T Consensus 294 ~~c~~L~~l~l~~n~---------i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDK---------ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSC---------CCEECTTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCc---------cCccchhhhcCCcchhhhc
Confidence 778888888875443 1111223566677777765
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=2.5e-07 Score=90.63 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=20.9
Q ss_pred HhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecC
Q 047511 414 EAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGG 466 (471)
Q Consensus 414 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 466 (471)
+..+...++|++|+|++|.. .......+...+...++|++|+|++|.+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i-----~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGA-----GDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCC-----CHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHhcCCCcCeEECCCCCC-----CHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 33444455555555554441 1111112333333344555555555544
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=2.3e-06 Score=82.22 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=32.3
Q ss_pred hHHhhcCCccccc-ceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCCC
Q 047511 412 AREAQLNGKKNLK-TLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKCR 470 (471)
Q Consensus 412 ~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~P 470 (471)
..+.+|.++.+|+ .+.+.. ....--..++..|++|++|+++++.+..++
T Consensus 264 I~~~aF~~~~~L~~~l~l~~----------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 264 IGQRVFSNCGRLAGTLELPA----------SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp ECTTTTTTCTTCCEEEEECT----------TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred ehHHHhhCChhccEEEEEcc----------cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 3345677777777 777752 111112356778889999999888776654
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.04 E-value=9.2e-05 Score=72.46 Aligned_cols=228 Identities=12% Similarity=0.013 Sum_probs=113.5
Q ss_pred CCccchHHHHHHHHHHHhhh------h-HHHHHHHHH-H-HhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcC
Q 047511 1 MIGETNLSVSIEMLVNKLAS------E-AILLFSLQE-Q-IQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMS 71 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~------~-~~~~~~lq~-~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 71 (471)
|+||||||+++++.+..... . ...+..... . -..++. ..+...+.... ......+..++...+.+.+.
T Consensus 55 G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~l~~~l~~~~-~~~~~~~~~~~~~~l~~~l~ 131 (384)
T 2qby_B 55 GTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL--SSLAGKLTGFS-VPKHGINLGEYIDKIKNGTR 131 (384)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH--HHHHHHHHCSC-CCSSSSCTHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH--HHHHHHhcCCC-CCCCCCCHHHHHHHHHHHhc
Confidence 79999999999998766532 1 111111111 0 001111 11111121111 11122334566777888888
Q ss_pred CCcEEEEEecCCCCCcch-hhh-ccccccCCCCCcEEEee----------------------------CchhHHHHHhhh
Q 047511 72 RKKFLLVLDDVWNENYSD-WDS-LSLPFEAGAPGCQIILT----------------------------KDDCLQVFTQHC 121 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~-~~~-l~~~~~~~~~gsriiiT----------------------------~~ea~~Lf~~~a 121 (471)
.++.+|||||++.-...+ .+. +..-+.+. .+.++|+| .++..++|...+
T Consensus 132 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 132 NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp SSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 777799999994321111 111 11111222 56666666 466777887764
Q ss_pred c---CCCCCCCCchHHHHHHHHHHHcC---CCch-HHHHHHHHHcCCC--CCCCcCCch--------hHHhhhccCCChh
Q 047511 122 L---GMRDFSMQQSLKDISEKIVIRCN---GLPL-PAKTLVGLLRGEN--DPLVSCDII--------PALRLSYHYLSPN 184 (471)
Q Consensus 122 f---~~~~~~~~~~~~~~~~~iv~~c~---GlPL-al~~~g~~L~~~~--~~~~~~~i~--------~~l~~sy~~L~~~ 184 (471)
. ... ...+ +....++++|+ |.|- |+..+..+..... ..-..+.+. ..+..+++.|+++
T Consensus 211 ~~~~~~~--~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~ 285 (384)
T 2qby_B 211 EYGLIKG--TYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFH 285 (384)
T ss_dssp HHTSCTT--SCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HhhcccC--CcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHH
Confidence 2 211 1222 44566777777 8776 4444443332111 111111122 2345566889998
Q ss_pred hHHHHhHhccCCCC-ccccHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHhcCccccc
Q 047511 185 LKRCFAYCSLFPKN-YEFHEEEVTLLWMAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQS 245 (471)
Q Consensus 185 ~k~~fl~~~~f~~~-~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 245 (471)
.|..+..++. ... ..+. ..........| ..+. .......+++.|.+.++++..
T Consensus 286 ~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~~~-----~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 286 YKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QKPL-----SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CCCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 8888877776 211 1111 12222222333 1111 124456789999999999863
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.01 E-value=6.4e-06 Score=74.82 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=57.5
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCC
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRD 126 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~ 126 (471)
.+++.+||+||+..-+...++.+...+.....+.++|+| .++..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 457899999999654456677776666555567777777 56677777776643221
Q ss_pred CCCCchHHHHHHHHHHHcCCCchHHHHHHHHH
Q 047511 127 FSMQQSLKDISEKIVIRCNGLPLPAKTLVGLL 158 (471)
Q Consensus 127 ~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 158 (471)
... .+....+++.|+|.|..+..+...+
T Consensus 204 -~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 -AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp -CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 3557789999999999887766544
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.86 E-value=9.5e-06 Score=77.64 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=63.6
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCCCCc-----CCc---hhHHhhhccCC
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPAKTLVGLLRGENDPLVS-----CDI---IPALRLSYHYL 181 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~~~-----~~i---~~~l~~sy~~L 181 (471)
.+|..+++...+..... .. -.+....++++|.|.|-.+..+...+......... ..+ ...+...+..+
T Consensus 170 ~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l 245 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL 245 (324)
T ss_dssp HHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCC
Confidence 45566676666543221 11 13567888999999998887776665433321111 111 22233345667
Q ss_pred ChhhHHHHhHhccCCCCccccHH-----------HHHH----HHHHCCCCCCCCchhHHHHHHHHHHH-HHHhcCccc
Q 047511 182 SPNLKRCFAYCSLFPKNYEFHEE-----------EVTL----LWMAEGFPYHIDTKEQIQDLGHKFLH-ELYSRSSFQ 243 (471)
Q Consensus 182 ~~~~k~~fl~~~~f~~~~~i~~~-----------~l~~----~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 243 (471)
++.++..+..+.....+..+... .+.+ +-+..|++.....+..+.+.|..++. ++++|+|||
T Consensus 246 ~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (324)
T 1hqc_A 246 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLE 323 (324)
T ss_dssp CHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC-----
T ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCC
Confidence 77777777665543333322222 2221 12334555433333344455555554 555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=2.1e-05 Score=72.66 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=64.8
Q ss_pred CCCCcceEEEecCCCCCcCC---ccccCCCCCcEEEccCCCcccccchhhhccc--cCCeeecCCCCCCccCcc------
Q 047511 294 GDLKHLRHLDLSETDIQILP---ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLL--KLHHLDNSDVDASEEIPK------ 362 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~--~L~~L~l~~~~~~~~lP~------ 362 (471)
.++++|+.|+|++|+|+.++ ..+..+++|+.|+|++| .+..+ ..+..+. +|+.|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35788999999999998654 66779999999999995 56655 3466666 999999999965555662
Q ss_pred -cccCCCCCcccCCeeec
Q 047511 363 -GMGKLACLLTLCSFVVG 379 (471)
Q Consensus 363 -~~~~l~~L~~L~~~~~~ 379 (471)
-+..+++|+.|+...+.
T Consensus 245 ~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHHCTTCCEESSCBCC
T ss_pred HHHHHCcccCeECCcCCC
Confidence 26788999999865443
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=6.5e-06 Score=80.03 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=83.3
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhh--ccccCCeeecCCC--C-----CCccCccc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMG--NLLKLHHLDNSDV--D-----ASEEIPKG 363 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~--~l~~L~~L~l~~~--~-----~~~~lP~~ 363 (471)
+..+++|+.|++++|.-..+|. +. +++|+.|++..|.........+. .+++|++|+++.+ . .+..+.+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3567899999999884224554 43 88999999987654333333344 7899999998532 1 12222222
Q ss_pred c--cCCCCCcccCCeeecCcc--cccccccc-cccccCceEEcccCCCCChhh----hHHhhcCCcccccceEEEecC
Q 047511 364 M--GKLACLLTLCSFVVGKDI--GSALQELK-LLHLHGALEISKLENVRDVSE----AREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 364 ~--~~l~~L~~L~~~~~~~~~--~~~~~~l~-l~~L~~~L~~~~l~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~ 432 (471)
+ ..+++|++|.+..+.... ...+.+.+ +++|+ .|.++. +.+.+ .++..+..+++|+.|+|+.|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~-~LdLs~----n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE-TMDISA----GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS-EEECCS----SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC-EEECCC----CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 2 357899999876544321 12233335 77888 787765 23333 344445677899999998775
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.81 E-value=5.4e-05 Score=74.73 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=76.6
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCC--------------
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVD-------------- 355 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~-------------- 355 (471)
..|.++++|+.+++.+|.++.+|.......+|+.+.+.. .+..++. .|.++++|+.+++..+-
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGIT 251 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCS
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCcc
Confidence 456667777777777766666654433345566665553 2333332 34445555555554320
Q ss_pred ------CCccCccc-ccCCCCCcccCCeeecCcc--cccc--cccc-cccccCceEEcccCCCCChhhhHHhhcCCcccc
Q 047511 356 ------ASEEIPKG-MGKLACLLTLCSFVVGKDI--GSAL--QELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNL 423 (471)
Q Consensus 356 ------~~~~lP~~-~~~l~~L~~L~~~~~~~~~--~~~~--~~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L 423 (471)
.+..++.. |.++++|+.+.+....... ...+ ..+. ..+|+ .+.+.. ++.......|.+|.+|
T Consensus 252 ~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~-~l~l~~-----~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 252 TVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA-RFEIPE-----SIRILGQGLLGGNRKV 325 (401)
T ss_dssp EEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC-EECCCT-----TCCEECTTTTTTCCSC
T ss_pred EEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC-eEEeCC-----ceEEEhhhhhcCCCCc
Confidence 23334332 4555555555432211100 0001 0111 22333 232221 1222234557777778
Q ss_pred cceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEeecCCCC
Q 047511 424 KTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGYGGTKC 469 (471)
Q Consensus 424 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 469 (471)
+.+.|..+ ...--..++..+ +|+++++.++....+
T Consensus 326 ~~l~lp~~----------l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 326 TQLTIPAN----------VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CEEEECTT----------CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cEEEECcc----------ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 87777421 111123456667 888888888765554
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.80 E-value=6.3e-05 Score=67.13 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCCC
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRDF 127 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~~ 127 (471)
+++.+||+||+..-....++.+...+.....+.++|+| .++..+++...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 67899999999554445556666656555667788877 34445555544422110
Q ss_pred CCCchHHHHHHHHHHHcCCCchHHHHH
Q 047511 128 SMQQSLKDISEKIVIRCNGLPLPAKTL 154 (471)
Q Consensus 128 ~~~~~~~~~~~~iv~~c~GlPLal~~~ 154 (471)
... .+....+++.++|.|..+..+
T Consensus 180 ~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 180 KIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 011 234556667777777754443
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.00011 Score=69.83 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=51.2
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCC
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRD 126 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~ 126 (471)
.+++.+||+||++.-....++.+...+.....++++|+| .++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999654445566666655555566777776 45566666655432111
Q ss_pred CCCCchHHHHHHHHHHHcCCCch-HHHHHHHH
Q 047511 127 FSMQQSLKDISEKIVIRCNGLPL-PAKTLVGL 157 (471)
Q Consensus 127 ~~~~~~~~~~~~~iv~~c~GlPL-al~~~g~~ 157 (471)
.. -.+....+++.|+|.|. |+..+...
T Consensus 185 -~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 185 -KY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp -CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 12456788899999994 45555443
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.65 E-value=0.00034 Score=68.27 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=111.0
Q ss_pred CCccchHHHHHHHHHHHhhhh---HHHHHHHH-------HHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHc
Q 047511 1 MIGETNLSVSIEMLVNKLASE---AILLFSLQ-------EQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQM 70 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~---~~~~~~lq-------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 70 (471)
|+||||||+++++........ ...+..+. ..+...+. ..+.. .......+..++...+.+.+
T Consensus 54 G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~------~~l~~--~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 54 GTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIA------EAVGV--RVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHH------HHHSC--CCCSSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHH------HHhCC--CCCCCCCCHHHHHHHHHHHH
Confidence 799999999999987654321 00011110 11122222 11111 11112334556666677776
Q ss_pred --CCCcEEEEEecCCCCCcc--hhhhccccccCC-----CCCcEEEee-----------------------------Cch
Q 047511 71 --SRKKFLLVLDDVWNENYS--DWDSLSLPFEAG-----APGCQIILT-----------------------------KDD 112 (471)
Q Consensus 71 --~~kr~LiVLDDVw~~~~~--~~~~l~~~~~~~-----~~gsriiiT-----------------------------~~e 112 (471)
.+++++|||||+..-... ..+.+...+.+. ..+..+|.| .++
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQ 205 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence 456899999999331111 112222222211 334455555 455
Q ss_pred hHHHHHhhhc---CCCCCCCCchHHHHHHHHHHHcC---CCc-hHHHHHHHHHc---CCCCC-CCcCCc--------hhH
Q 047511 113 CLQVFTQHCL---GMRDFSMQQSLKDISEKIVIRCN---GLP-LPAKTLVGLLR---GENDP-LVSCDI--------IPA 173 (471)
Q Consensus 113 a~~Lf~~~af---~~~~~~~~~~~~~~~~~iv~~c~---GlP-Lal~~~g~~L~---~~~~~-~~~~~i--------~~~ 173 (471)
..+++...+- ... ...+ +....++++++ |.| .|+.++..+.. ..... -..+.+ ...
T Consensus 206 ~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 280 (387)
T 2v1u_A 206 LRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDR 280 (387)
T ss_dssp HHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhch
Confidence 6666666532 211 1112 34556677777 998 34333333321 11111 011111 123
Q ss_pred HhhhccCCChhhHHHHhHhcc-CCCCccccHHHHHHHH----HHCCCCCCCCchhHHHHHHHHHHHHHHhcCccccc
Q 047511 174 LRLSYHYLSPNLKRCFAYCSL-FPKNYEFHEEEVTLLW----MAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQS 245 (471)
Q Consensus 174 l~~sy~~L~~~~k~~fl~~~~-f~~~~~i~~~~l~~~w----~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 245 (471)
+..++..|+++.+..++.++. +.....+....+.+.. ...| ..+. ....+..+++.|...++++..
T Consensus 281 ~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 281 VSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV-----TLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC-----CHHHHHHHHHHHHhCCCeEEE
Confidence 445668899999988877773 3322244444333322 2233 2221 124566789999999999873
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2.5e-05 Score=68.24 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=57.0
Q ss_pred cCCCCcceEEEecCC-CCC-----cCCccccCCCCCcEEEccCCCcc----cccchhhhccccCCeeecCCCCCCcc---
Q 047511 293 FGDLKHLRHLDLSET-DIQ-----ILPESVNTLYNLRTLMLQKCNQL----AKMCSDMGNLLKLHHLDNSDVDASEE--- 359 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~~~----~~lP~~~~~l~~L~~L~l~~~~~~~~--- 359 (471)
+...+.|+.|+|++| .+. .+...+...++|++|++++|..- ..+...+...++|++|++++| .++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 456688999999999 887 35566777889999999996532 234555666688999999998 4443
Q ss_pred --CcccccCCCCCcccCC
Q 047511 360 --IPKGMGKLACLLTLCS 375 (471)
Q Consensus 360 --lP~~~~~l~~L~~L~~ 375 (471)
+...+...++|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 3344555555555554
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.48 E-value=0.00017 Score=70.28 Aligned_cols=231 Identities=11% Similarity=-0.026 Sum_probs=108.6
Q ss_pred CCccchHHHHHHHHHHHhhh--hHHHHHHHHH-HHhhhHHHHHHHHHHHhhccCCC-CCCCcHHHHHHHHHHHcC--CCc
Q 047511 1 MIGETNLSVSIEMLVNKLAS--EAILLFSLQE-QIQSDLKKWKKILVFIATADQPV-NGTDELGLLQEKLKNQMS--RKK 74 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~--~~~~~~~lq~-~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~--~kr 74 (471)
|+||||||+++++.+...+. ....+..... .....+. ..+ +...+... ....+..+....+.+.+. +++
T Consensus 55 G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~i---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 129 (386)
T 2qby_A 55 GTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL--ADL---LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ 129 (386)
T ss_dssp TSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH--HHH---TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH--HHH---HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 79999999999998766532 1111111111 0001111 111 11111111 122335555566666664 458
Q ss_pred EEEEEecCCCCC----cchhhhccccccC-CCCCcEEEee-----------------------------CchhHHHHHhh
Q 047511 75 FLLVLDDVWNEN----YSDWDSLSLPFEA-GAPGCQIILT-----------------------------KDDCLQVFTQH 120 (471)
Q Consensus 75 ~LiVLDDVw~~~----~~~~~~l~~~~~~-~~~gsriiiT-----------------------------~~ea~~Lf~~~ 120 (471)
.+|||||++.-. ...+..+...+.. ...+..+|+| .++..+++...
T Consensus 130 ~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 130 VVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp EEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred EEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 999999994310 1233333332221 1223444444 45666777665
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHcC---CCchH-HHHHHHHHc--C-CCC-CCCcCCc--------hhHHhhhccCCChh
Q 047511 121 CLGMRDFSMQQSLKDISEKIVIRCN---GLPLP-AKTLVGLLR--G-END-PLVSCDI--------IPALRLSYHYLSPN 184 (471)
Q Consensus 121 af~~~~~~~~~~~~~~~~~iv~~c~---GlPLa-l~~~g~~L~--~-~~~-~~~~~~i--------~~~l~~sy~~L~~~ 184 (471)
+..... ...--.+....+++.++ |.|.. +..+..+.. . ... .-....+ ...+...+..++..
T Consensus 210 ~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~ 287 (386)
T 2qby_A 210 AQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFH 287 (386)
T ss_dssp HHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHH
Confidence 321100 01111345566667776 98884 333333221 1 111 1111111 13455667889988
Q ss_pred hHHHHhHhccCCC-C-ccccHHHHHHHH----HHCCCCCCCCchhHHHHHHHHHHHHHHhcCcccc
Q 047511 185 LKRCFAYCSLFPK-N-YEFHEEEVTLLW----MAEGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQ 244 (471)
Q Consensus 185 ~k~~fl~~~~f~~-~-~~i~~~~l~~~w----~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 244 (471)
.+..+..++...+ + ..+....+.+.. ...| +.+. .......+++.|.+.++++.
T Consensus 288 ~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~-----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 288 SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAV-----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCC-----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCC-----CHHHHHHHHHHHHhCCCEEE
Confidence 8888877775322 2 123343332221 1122 1111 11345567999999999976
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=3.2e-05 Score=67.55 Aligned_cols=123 Identities=13% Similarity=0.030 Sum_probs=68.5
Q ss_pred CccccCCCCCcEEEccCCCcc-----cccchhhhccccCCeeecCCCCCCcc-----CcccccCCCCCcccCCeeecCcc
Q 047511 313 PESVNTLYNLRTLMLQKCNQL-----AKMCSDMGNLLKLHHLDNSDVDASEE-----IPKGMGKLACLLTLCSFVVGKDI 382 (471)
Q Consensus 313 p~~i~~l~~L~~L~l~~~~~~-----~~lP~~~~~l~~L~~L~l~~~~~~~~-----lP~~~~~l~~L~~L~~~~~~~~~ 382 (471)
...+...+.|+.|++++|..+ ..+...+...++|++|++++| .++. +...+...++|++|++..+....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345667889999999987244 335556677789999999999 4432 23334445566666544332211
Q ss_pred cccccccccccccCceEEcccCCCCChhhhHHhhcCCcccccceEE--EecCCCCCCCCcchHHHhhccCCCCCCcceEE
Q 047511 383 GSALQELKLLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLL--QWTSNNGDSREPEIETHVLDMLKPHQNLERFC 460 (471)
Q Consensus 383 ~~~~~~l~l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 460 (471)
.....+...+...++|++|+| ++|.. .......+.+.+...++|++|+
T Consensus 108 -------------------------~g~~~l~~~L~~n~~L~~L~L~~~~N~i-----~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 108 -------------------------SGILALVEALQSNTSLIELRIDNQSQPL-----GNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp -------------------------HHHHHHHHGGGGCSSCCEEECCCCSSCC-----CHHHHHHHHHHHHHCSSCCEEE
T ss_pred -------------------------HHHHHHHHHHHhCCCceEEEecCCCCCC-----CHHHHHHHHHHHHhCCCcCEEe
Confidence 011123344555566777777 54441 1111222334444455677777
Q ss_pred EEeecC
Q 047511 461 ISGYGG 466 (471)
Q Consensus 461 L~~~~~ 466 (471)
|++|.+
T Consensus 158 L~~n~i 163 (185)
T 1io0_A 158 YHFTQQ 163 (185)
T ss_dssp CCCSSH
T ss_pred ccCCCC
Confidence 766653
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.41 E-value=0.00029 Score=68.89 Aligned_cols=227 Identities=12% Similarity=0.018 Sum_probs=112.4
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHH-HH----HHHhhhHHHHHHHHHHHhhccCCC-CCCCcHHHHHHHHHHHcC--C
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFS-LQ----EQIQSDLKKWKKILVFIATADQPV-NGTDELGLLQEKLKNQMS--R 72 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~-lq----~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~--~ 72 (471)
|+||||||+++++.............. .. ..+...+. ..+ +... ....+..++...+.+.+. +
T Consensus 54 G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~------~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~ 124 (389)
T 1fnn_A 54 GTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA------RSL---NIPFPRRGLSRDEFLALLVEHLRERD 124 (389)
T ss_dssp TSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH------HHT---TCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH------HHh---CccCCCCCCCHHHHHHHHHHHHhhcC
Confidence 799999999999887543100001111 00 11111111 111 1111 112345555566666553 6
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCC-C---CCcEEEee-----------------------------CchhHHHHHh
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAG-A---PGCQIILT-----------------------------KDDCLQVFTQ 119 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~-~---~gsriiiT-----------------------------~~ea~~Lf~~ 119 (471)
++.+|||||+..-+...+..+...+... . .+..||++ .++..+++..
T Consensus 125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~ 204 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLD 204 (389)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHH
T ss_pred CeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 7899999999554444455544443221 1 35555555 2445555554
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHc---------CCCchHHHH-HHHHHc-----CCCCCCCcCCchh--------HHhh
Q 047511 120 HCLGMRDFSMQQSLKDISEKIVIRC---------NGLPLPAKT-LVGLLR-----GENDPLVSCDIIP--------ALRL 176 (471)
Q Consensus 120 ~af~~~~~~~~~~~~~~~~~iv~~c---------~GlPLal~~-~g~~L~-----~~~~~~~~~~i~~--------~l~~ 176 (471)
.+..... ...--.+....+++++ +|.|-.+.. +..+.. +.... ..+.+.. .+..
T Consensus 205 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i-~~~~v~~~~~~~~~~~~~~ 281 (389)
T 1fnn_A 205 RAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHI-APEDVRKSSKEVLFGISEE 281 (389)
T ss_dssp HHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHSCCCCHH
T ss_pred HHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHhhhhHHH
Confidence 4321000 0011134566788888 787644333 322221 11111 1112222 2233
Q ss_pred hccCCChhhHHHHhHhccCC---CCccccHHHHHHHHHH----CCCCCCCCchhHHHHHHHHHHHHHHhcCccccc
Q 047511 177 SYHYLSPNLKRCFAYCSLFP---KNYEFHEEEVTLLWMA----EGFPYHIDTKEQIQDLGHKFLHELYSRSSFQQS 245 (471)
Q Consensus 177 sy~~L~~~~k~~fl~~~~f~---~~~~i~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 245 (471)
.+..|+.+.+.++..++.+. .+..+....+...+.. .|. .+.. ......++++|.+.++|...
T Consensus 282 ~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 282 VLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RPRV-----HSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CCCC-----HHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CCCC-----HHHHHHHHHHHHhCCCeEEe
Confidence 45678888888877777654 2224555555554432 232 1111 23456789999999999874
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=0.00017 Score=61.97 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=58.9
Q ss_pred CCCcCCCCcceEEEecCCCCCc-CCccccCCCCCcEEEccCCCccccc-chhhhcc----ccCCeeecCCCCCCccCc-c
Q 047511 290 PNSFGDLKHLRHLDLSETDIQI-LPESVNTLYNLRTLMLQKCNQLAKM-CSDMGNL----LKLHHLDNSDVDASEEIP-K 362 (471)
Q Consensus 290 p~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~l-P~~~~~l----~~L~~L~l~~~~~~~~lP-~ 362 (471)
|.....-..|+.||+++|.++. --..+.++++|+.|+|++|..++.- =..+..+ ++|++|++++|..+..-- .
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 5444333579999999999883 2356789999999999999876542 1224443 479999999995554210 1
Q ss_pred cccCCCCCcccCCeee
Q 047511 363 GMGKLACLLTLCSFVV 378 (471)
Q Consensus 363 ~~~~l~~L~~L~~~~~ 378 (471)
.+.++++|++|++..+
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 2455666666655433
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.16 E-value=0.00045 Score=68.11 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=59.2
Q ss_pred CcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLAC 369 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~ 369 (471)
.|.+ .+|+.+.+.. .++.++ ..|.++.+|+.+++++ +.+..+|...-...+|+.+.+..+ +..++.. |.++++
T Consensus 153 aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~ 227 (401)
T 4fdw_A 153 AFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQ 227 (401)
T ss_dssp TTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTT
T ss_pred hcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCC
Confidence 3445 3688888875 677664 5788889999999987 477788877666788999988754 6777765 778888
Q ss_pred CcccCC
Q 047511 370 LLTLCS 375 (471)
Q Consensus 370 L~~L~~ 375 (471)
|+.+.+
T Consensus 228 L~~l~l 233 (401)
T 4fdw_A 228 LKTIEI 233 (401)
T ss_dssp CCCEEC
T ss_pred CCEEec
Confidence 888864
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.15 E-value=0.00019 Score=61.56 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=55.8
Q ss_pred cCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCcccccCCCCCcccCCeeecCcccccccccc
Q 047511 311 ILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLACLLTLCSFVVGKDIGSALQELK 390 (471)
Q Consensus 311 ~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 390 (471)
.+|.....-.+|+.||+++|.....=-..+..+++|++|++++|..+.. .++..+..+.. .
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~-----------------~ 112 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLEN-----------------L 112 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHH-----------------H
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhccc-----------------c
Confidence 3455433335799999999863322223467888999999999854432 11111111000 0
Q ss_pred cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecC
Q 047511 391 LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTS 432 (471)
Q Consensus 391 l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 432 (471)
-.+|+ .|.++++.+ +++..-..+.++++|++|+|+.|.
T Consensus 113 ~~~L~-~L~Ls~C~~---ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 113 QKSML-EMEIISCGN---VTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHCC-EEEEESCTT---CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred cCCCC-EEEcCCCCc---CCHHHHHHHhcCCCCCEEECCCCC
Confidence 11344 555555443 333333456778888888888775
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.03 E-value=5.7e-05 Score=69.80 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=50.7
Q ss_pred CcceE--EEecCCCCCcCCcc----ccCCCCCcEEEccCCCccc--ccchhhhccccCCeeecCCCCCCccCcccccCCC
Q 047511 297 KHLRH--LDLSETDIQILPES----VNTLYNLRTLMLQKCNQLA--KMCSDMGNLLKLHHLDNSDVDASEEIPKGMGKLA 368 (471)
Q Consensus 297 ~~L~~--L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~--~lP~~~~~l~~L~~L~l~~~~~~~~lP~~~~~l~ 368 (471)
+.|+. ++++.|....++.. ..++++|+.|+|++|...+ .+|..+..+++|+.|+|++| .+..+ ..+..++
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcc
Confidence 34444 45566654444332 2468899999999965433 45577789999999999999 66655 2344444
Q ss_pred --CCcccCCee
Q 047511 369 --CLLTLCSFV 377 (471)
Q Consensus 369 --~L~~L~~~~ 377 (471)
+|++|.+..
T Consensus 219 ~l~L~~L~L~~ 229 (267)
T 3rw6_A 219 GLKLEELWLDG 229 (267)
T ss_dssp TSCCSEEECTT
T ss_pred cCCcceEEccC
Confidence 566665443
No 170
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.99 E-value=0.001 Score=63.28 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=48.9
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee------------------------CchhHHHHHhhhcCCCCC
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT------------------------KDDCLQVFTQHCLGMRDF 127 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT------------------------~~ea~~Lf~~~af~~~~~ 127 (471)
+++.+||+||+..-....++.+...+.....++++|+| .++..+++...+.....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~- 187 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 187 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-
Confidence 57889999999654445566666666555567788877 33444444444322210
Q ss_pred CCCchHHHHHHHHHHHcCCCchHHHHHHHHH
Q 047511 128 SMQQSLKDISEKIVIRCNGLPLPAKTLVGLL 158 (471)
Q Consensus 128 ~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 158 (471)
.--.+....+++.++|.|-.+..+-..+
T Consensus 188 ---~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 188 ---ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ---EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 0112455667778888887655444333
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.07 E-value=0.017 Score=54.42 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++.+||+||+..-.....+.+...+.....+.++|+|
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 138 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEE
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 66889999999443334456666666555566777777
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.87 E-value=0.0044 Score=61.74 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+||||||+++++.+...+
T Consensus 140 G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 140 GLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SSSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 7999999999999886653
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.73 E-value=0.01 Score=57.43 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=24.6
Q ss_pred CCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 71 SRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 71 ~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+++.+||+||+..-+...++.+...+.....+..+|++
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEE
Confidence 456789999999443334556665555544455666666
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.38 E-value=0.0072 Score=51.99 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||||+++++.+..
T Consensus 48 G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 48 GVGKTHLAVATLKAIYE 64 (180)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999998753
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.032 Score=53.39 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+++++.+..
T Consensus 68 G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 68 GTGKTSTILALTKELYG 84 (353)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 79999999999988653
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.22 E-value=0.064 Score=43.36 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=32.7
Q ss_pred EEEecCCCCC--cCCccccCCCCCcEEEccCCCcccccchh-hhccccCCeeecCCC
Q 047511 301 HLDLSETDIQ--ILPESVNTLYNLRTLMLQKCNQLAKMCSD-MGNLLKLHHLDNSDV 354 (471)
Q Consensus 301 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~l~~~ 354 (471)
.++.++++++ .+|..+. .+|+.|+|++ +.+..+|.. |..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 5666677776 6775543 3577777776 456666554 456677777777776
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.16 E-value=0.066 Score=50.67 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||+||+++++....
T Consensus 61 GtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 61 GTGKSYLAKAVATEANS 77 (322)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHCC
Confidence 79999999999987543
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.14 E-value=0.032 Score=51.68 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||+++++...
T Consensus 61 GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 61 GTGKTLLAKAVATETN 76 (285)
T ss_dssp SSSHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7999999999998753
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.13 E-value=0.047 Score=51.99 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||+++++...
T Consensus 65 GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 65 GLGKTTLANIISYEMS 80 (338)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7999999999987653
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.12 E-value=0.11 Score=50.47 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=54.8
Q ss_pred cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCccccccc--ccc-
Q 047511 315 SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQ--ELK- 390 (471)
Q Consensus 315 ~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~--~l~- 390 (471)
.|.++.+|+.+.+.. +....-...+.++.+|+.+.+.. .+..++.. |.++++|+.+.+-. . ...+. .+.
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~---~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE---G-ITQILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT---T-CCEECTTTTTT
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC---c-ccEehHhHhhC
Confidence 344555555555543 11111122344555566655542 34445543 55555665554310 0 00111 111
Q ss_pred cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEee
Q 047511 391 LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGY 464 (471)
Q Consensus 391 l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 464 (471)
..+|+ .+.+-. ++......+|.+|.+|+.+.+..+. . ....+..+.+|+.+.+..+
T Consensus 333 C~~L~-~i~ip~-----sv~~I~~~aF~~C~~L~~i~~~~~~---------~---~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 333 CEQLE-RIAIPS-----SVTKIPESAFSNCTALNNIEYSGSR---------S---QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCC-EEEECT-----TCCBCCGGGGTTCTTCCEEEESSCH---------H---HHHTCBCCCCC--------
T ss_pred CCCCC-EEEECc-----ccCEEhHhHhhCCCCCCEEEECCce---------e---ehhhhhccCCCCEEEeCCC
Confidence 23344 443321 1222223568899999999986322 1 2245666778888888654
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.03 E-value=0.034 Score=49.78 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||||+++++.....
T Consensus 62 G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 62 KSGRTHLIHAACARANEL 79 (242)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999887543
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.91 E-value=0.024 Score=49.61 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||||+++++.....
T Consensus 64 GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 64 GVGKTYLLAAIANELAKR 81 (202)
T ss_dssp TSSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999887543
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.77 E-value=0.16 Score=46.02 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++...
T Consensus 49 GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 49 GCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7999999999998653
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.65 E-value=0.024 Score=54.41 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 73 KKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 73 kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
++-++|||++-.-+....+.+...+.....+.++|++
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 5669999999554444444555544443456677666
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.37 E-value=0.26 Score=47.88 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=68.4
Q ss_pred cCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCc
Q 047511 293 FGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLL 371 (471)
Q Consensus 293 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~ 371 (471)
+..+..|+.+.+..+...--...+.++..++.+..... .+. ...+..+.+|+.+.+..+ +..+++. +.++++|+
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~-~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV-IVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS-EEC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCce-eec--cccccccccccccccccc--cceechhhhcCCCCCC
Confidence 34455555555554433222334555555655555431 111 123556677777777554 5556554 66777777
Q ss_pred ccCCeeecCcccccccccc------cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHH
Q 047511 372 TLCSFVVGKDIGSALQELK------LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETH 445 (471)
Q Consensus 372 ~L~~~~~~~~~~~~~~~l~------l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 445 (471)
.+.+-. .+..++ ..+|+ .+.+.. ++......+|.+|.+|+++.+..+- ..
T Consensus 324 ~i~lp~-------~v~~I~~~aF~~c~~L~-~i~lp~-----~l~~I~~~aF~~C~~L~~i~lp~~~-----------~~ 379 (394)
T 4fs7_A 324 SIDLPY-------LVEEIGKRSFRGCTSLS-NINFPL-----SLRKIGANAFQGCINLKKVELPKRL-----------EQ 379 (394)
T ss_dssp EECCCT-------TCCEECTTTTTTCTTCC-EECCCT-----TCCEECTTTBTTCTTCCEEEEEGGG-----------GG
T ss_pred EEEeCC-------cccEEhHHhccCCCCCC-EEEECc-----cccEehHHHhhCCCCCCEEEECCCC-----------EE
Confidence 775411 122221 23333 333211 1222233567888888888875221 12
Q ss_pred hhccCCCCCCcceE
Q 047511 446 VLDMLKPHQNLERF 459 (471)
Q Consensus 446 ~~~~l~~~~~L~~L 459 (471)
+...+..+++|+++
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 23456666666654
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.15 E-value=0.18 Score=48.38 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||+++++...
T Consensus 94 GtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 94 GTGKSYLAKAVATEAN 109 (355)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7999999999998764
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.14 E-value=0.016 Score=49.78 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+++++.+..
T Consensus 53 G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 53 GVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999988754
No 188
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.65 E-value=0.13 Score=41.49 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred CcceEEEecCCCCCcCCc-cccCCCCCcEEEccCCC
Q 047511 297 KHLRHLDLSETDIQILPE-SVNTLYNLRTLMLQKCN 331 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 331 (471)
.+|+.|+|++|+|+.+|. .+..+++|++|+|++|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 368999999999999976 56889999999999963
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.62 E-value=0.033 Score=52.23 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+++++.+..
T Consensus 77 GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 77 GTGKTTVALKMAGLLHR 93 (309)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999988754
No 190
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.44 E-value=0.24 Score=49.09 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+.+++....
T Consensus 60 GtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 60 GTGKTTLAEVIARYANA 76 (447)
T ss_dssp TSSHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHhCC
Confidence 79999999999987643
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.00 E-value=0.14 Score=48.37 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||+||+++++..
T Consensus 55 GtGKT~la~ala~~~ 69 (322)
T 1xwi_A 55 GTGKSYLAKAVATEA 69 (322)
T ss_dssp SSCHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHc
Confidence 789999999999865
No 192
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.79 E-value=0.2 Score=47.61 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-++|+|++-.-.....+.+...+..-.++..+|++
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 56788999999433233444555555443445666555
No 193
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.14 Score=48.12 Aligned_cols=19 Identities=5% Similarity=-0.199 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||++|++|++.+.+..
T Consensus 55 GTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 55 DSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp SHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 7899999999999987643
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.55 E-value=0.066 Score=49.21 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||||+++++..
T Consensus 74 GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 74 HSGKTALAAKIAEES 88 (272)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 799999999999874
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.11 E-value=0.091 Score=49.69 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+++++....
T Consensus 47 GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 47 GTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999998754
No 196
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.07 E-value=0.15 Score=51.74 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+++++..
T Consensus 87 GtGKTtla~~la~~l 101 (516)
T 1sxj_A 87 GIGKTTAAHLVAQEL 101 (516)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 799999999999876
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.88 E-value=0.71 Score=43.76 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++.+.
T Consensus 56 G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 56 GTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 7999999999998764
No 198
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.76 E-value=0.068 Score=50.51 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCC-cchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNEN-YSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~-~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-+|++||+-.-. ....+.+...+.....+.++|+|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 477899999993322 22334444433333345677777
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.68 E-value=0.23 Score=47.62 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||||+++++..
T Consensus 127 GtGKT~la~aia~~~ 141 (357)
T 3d8b_A 127 GTGKTLIGKCIASQS 141 (357)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 799999999998765
No 200
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.31 E-value=0.74 Score=44.58 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=65.4
Q ss_pred cccCCCCCcEEEccCCCcccccchhhhccccCCeeecCCCCCCccCccc-ccCCCCCcccCCeeecCcccccccc--cc-
Q 047511 315 SVNTLYNLRTLMLQKCNQLAKMCSDMGNLLKLHHLDNSDVDASEEIPKG-MGKLACLLTLCSFVVGKDIGSALQE--LK- 390 (471)
Q Consensus 315 ~i~~l~~L~~L~l~~~~~~~~lP~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~~L~~L~~~~~~~~~~~~~~~--l~- 390 (471)
.+.++.+|+.+.+.. +....-...+..+.+++.+....+ .+|.. +..+.+|+.+.+.. . ...+.+ +.
T Consensus 248 ~f~~~~~l~~~~~~~-~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~---~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 248 VFYGCTDLESISIQN-NKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLD---S-VKFIGEEAFES 318 (394)
T ss_dssp TTTTCSSCCEEEECC-TTCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECT---T-CCEECTTTTTT
T ss_pred cccccccceeEEcCC-CcceeeccccccccccceeccCce----eecccccccccccccccccc---c-cceechhhhcC
Confidence 345566666666654 222223334556666666665443 23433 55667777664311 0 111111 11
Q ss_pred cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEEecCCCCCCCCcchHHHhhccCCCCCCcceEEEEee
Q 047511 391 LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQWTSNNGDSREPEIETHVLDMLKPHQNLERFCISGY 464 (471)
Q Consensus 391 l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 464 (471)
..+|+ .+.+.. ++......+|.+|.+|+.+.+..+ ...--..++..|++|+++++..+
T Consensus 319 c~~L~-~i~lp~-----~v~~I~~~aF~~c~~L~~i~lp~~----------l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLV-SIDLPY-----LVEEIGKRSFRGCTSLSNINFPLS----------LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCC-EECCCT-----TCCEECTTTTTTCTTCCEECCCTT----------CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCC-EEEeCC-----cccEEhHHhccCCCCCCEEEECcc----------ccEehHHHhhCCCCCCEEEECCC
Confidence 33444 443321 122333457899999999988422 11111245777889999999753
No 201
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.60 E-value=0.11 Score=48.75 Aligned_cols=25 Identities=12% Similarity=0.506 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHcCCCcEEEEEecC
Q 047511 57 DELGLLQEKLKNQMSRKKFLLVLDDV 82 (471)
Q Consensus 57 ~~~~~~~~~l~~~L~~kr~LiVLDDV 82 (471)
.+.++....+.+.+.+.+ +||+|++
T Consensus 167 ~~le~~l~~i~~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 167 TDFNVFVDDIARAMLQHR-VIVIDSL 191 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-EEEEECC
T ss_pred cCHHHHHHHHHHHHhhCC-EEEEecc
Confidence 345666666777776666 9999999
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.56 E-value=0.87 Score=44.09 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=72.6
Q ss_pred CCcCCCCcceEEEecCCCCCcCCccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQILPESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
..|.++..|+.+.+..+...--...+.++.+|+.+.+.. .+..++. .|.++.+|+.+.+..+ +..++.. |.+++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 457788888888886554332245677888899888864 4666654 4677888999988754 5666654 78888
Q ss_pred CCcccCCeeecCccccccc--ccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEE
Q 047511 369 CLLTLCSFVVGKDIGSALQ--ELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQ 429 (471)
Q Consensus 369 ~L~~L~~~~~~~~~~~~~~--~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~ 429 (471)
+|+.+.+ +.+ ...+. .+. ..+|+ .+.+.+ +.. ....+..+.+|+.+.+.
T Consensus 335 ~L~~i~i---p~s-v~~I~~~aF~~C~~L~-~i~~~~-----~~~--~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 335 QLERIAI---PSS-VTKIPESAFSNCTALN-NIEYSG-----SRS--QWNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEEE---CTT-CCBCCGGGGTTCTTCC-EEEESS-----CHH--HHHTCBCCCCC------
T ss_pred CCCEEEE---Ccc-cCEEhHhHhhCCCCCC-EEEECC-----cee--ehhhhhccCCCCEEEeC
Confidence 8888753 111 11121 122 44555 555543 121 12457778888888885
No 203
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.09 E-value=0.15 Score=47.58 Aligned_cols=16 Identities=6% Similarity=-0.149 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||+++++...
T Consensus 46 GtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 46 GQGKSFQCELVFRKMG 61 (293)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7999999999998874
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.54 E-value=0.5 Score=45.82 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||+++++..
T Consensus 158 GtGKT~la~aia~~~ 172 (389)
T 3vfd_A 158 GNGKTMLAKAVAAES 172 (389)
T ss_dssp TSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhh
Confidence 799999999998764
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.17 E-value=0.51 Score=45.75 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||.||++|++.....|
T Consensus 192 GTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 192 GTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp SSSHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHhhCCCc
Confidence 7899999999998765443
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.15 E-value=0.18 Score=47.17 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+++++...
T Consensus 59 GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 59 GCGKTLLAKAIANECQ 74 (301)
T ss_dssp SSSHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhC
Confidence 7899999999998754
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.11 E-value=0.22 Score=49.46 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||+++++..
T Consensus 177 GtGKT~lA~aia~~~ 191 (444)
T 2zan_A 177 GTGKSYLAKAVATEA 191 (444)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc
Confidence 799999999999875
No 208
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.35 E-value=1.9 Score=41.31 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=48.6
Q ss_pred CcCCCCcceEEEecCCCCCcCC-ccccCCCCCcEEEccCCCcccccch-hhhccccCCeeecCCCCCCccCccc-ccCCC
Q 047511 292 SFGDLKHLRHLDLSETDIQILP-ESVNTLYNLRTLMLQKCNQLAKMCS-DMGNLLKLHHLDNSDVDASEEIPKG-MGKLA 368 (471)
Q Consensus 292 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lP~-~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l~ 368 (471)
.+.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.++ .+..+++. |.++.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCC
Confidence 4556677777777554 55443 3556667777777754 3444443 3566677777777665 55566554 66677
Q ss_pred CCcccCC
Q 047511 369 CLLTLCS 375 (471)
Q Consensus 369 ~L~~L~~ 375 (471)
+|+.+.+
T Consensus 311 ~L~~i~l 317 (379)
T 4h09_A 311 KLSSVTL 317 (379)
T ss_dssp TCCEEEC
T ss_pred CCCEEEc
Confidence 7766643
No 209
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.83 E-value=1.6 Score=41.86 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCcCCCCcceEEEecCCCCCcC-CccccCCCCCcEEEccCCCcccccc-hhhhccccCCeeecCCCCCCccCccc-ccCC
Q 047511 291 NSFGDLKHLRHLDLSETDIQIL-PESVNTLYNLRTLMLQKCNQLAKMC-SDMGNLLKLHHLDNSDVDASEEIPKG-MGKL 367 (471)
Q Consensus 291 ~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lP-~~~~~l~~L~~L~l~~~~~~~~lP~~-~~~l 367 (471)
..+.....|+.+.+..+ ++.+ ...+.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..++.. +..+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c 285 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGC 285 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTC
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccccc--ceeccccccccc
Confidence 34556667777776544 4434 34566777888887765 244443 34566777888877543 5566654 6677
Q ss_pred CCCcccCCeeecCccccccc--ccc-cccccCceEEcccCCCCChhhhHHhhcCCcccccceEEE
Q 047511 368 ACLLTLCSFVVGKDIGSALQ--ELK-LLHLHGALEISKLENVRDVSEAREAQLNGKKNLKTLLLQ 429 (471)
Q Consensus 368 ~~L~~L~~~~~~~~~~~~~~--~l~-l~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~L~ 429 (471)
++|+.+.+..... ..+. .+. ..+|+ .+.+.. ++......+|.+|.+|+++.+.
T Consensus 286 ~~L~~i~l~~~~i---~~I~~~aF~~c~~L~-~i~lp~-----~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNSAI---ETLEPRVFMDCVKLS-SVTLPT-----ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCTTC---CEECTTTTTTCTTCC-EEECCT-----TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc---ceehhhhhcCCCCCC-EEEcCc-----cccEEHHHHhhCCCCCCEEEEC
Confidence 7777775321110 1111 111 33444 443321 1222223467788888887774
No 210
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.22 E-value=0.62 Score=40.36 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=42.6
Q ss_pred CCCcceEEEecCC-CCC-----cCCccccCCCCCcEEEccCCCcc----cccchhhhccccCCeeecCCCCCCc
Q 047511 295 DLKHLRHLDLSET-DIQ-----ILPESVNTLYNLRTLMLQKCNQL----AKMCSDMGNLLKLHHLDNSDVDASE 358 (471)
Q Consensus 295 ~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~~~----~~lP~~~~~l~~L~~L~l~~~~~~~ 358 (471)
+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|..- ..+-..+..=+.|++|+++.| .++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 3367888899885 665 24556667788999999886432 233344445578889999888 444
No 211
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.15 E-value=0.44 Score=41.33 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=40.0
Q ss_pred ccCCCCCcEEEccCCCccc-----ccchhhhccccCCeeecCCCCCCcc-----CcccccCCCCCcccCCeeec
Q 047511 316 VNTLYNLRTLMLQKCNQLA-----KMCSDMGNLLKLHHLDNSDVDASEE-----IPKGMGKLACLLTLCSFVVG 379 (471)
Q Consensus 316 i~~l~~L~~L~l~~~~~~~-----~lP~~~~~l~~L~~L~l~~~~~~~~-----lP~~~~~l~~L~~L~~~~~~ 379 (471)
+.+-+.|+.|++++|+.++ .+-..+..-+.|+.|+|++| .++. +...+..-+.|++|++..+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3456789999998753443 24445566678999999999 4442 22334455677777665444
No 212
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.12 E-value=0.5 Score=43.36 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||++++....
T Consensus 83 GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 83 GVGKTHLARAVAGEAR 98 (278)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHcC
Confidence 7899999999997653
No 213
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=80.11 E-value=0.49 Score=46.84 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=16.0
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|+||||||..+......++
T Consensus 161 GvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 161 GVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp SSCHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHhhhhhcc
Confidence 7999999999998876544
No 214
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.01 E-value=0.34 Score=46.65 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||++.+.+.+...
T Consensus 184 G~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 184 KAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhc
Confidence 689999999999887654
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=0.53 Score=46.41 Aligned_cols=19 Identities=11% Similarity=-0.018 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||+||+++++.....|
T Consensus 253 GTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 253 GTGKTLCARAVANRTDATF 271 (467)
T ss_dssp TSSHHHHHHHHHHHHTCEE
T ss_pred CCcHHHHHHHHHhccCCCe
Confidence 7899999999998765443
No 216
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=77.77 E-value=2.6 Score=35.29 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=13.6
Q ss_pred HHHHHHcCCCcEEEEEecC
Q 047511 64 EKLKNQMSRKKFLLVLDDV 82 (471)
Q Consensus 64 ~~l~~~L~~kr~LiVLDDV 82 (471)
-.+.+.+..+.-++++|.-
T Consensus 92 v~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 92 IEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp HHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHcCCcEEEEEEeCC
Confidence 3455667777788888876
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.42 E-value=0.58 Score=45.91 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+||+++++.....
T Consensus 216 GtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 216 GTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp TTTHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 789999999999876443
No 218
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.35 E-value=0.79 Score=38.57 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+++++....
T Consensus 53 G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 53 GVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp GGCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 78999999999988644
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.06 E-value=1.2 Score=36.54 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++++++....
T Consensus 46 G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 46 GAGKSHLLQAWVAQALE 62 (149)
T ss_dssp TTTTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 78999999999987653
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=75.65 E-value=0.94 Score=38.10 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+++++.+.
T Consensus 13 GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 13 SAGKSGIVRCLQSVLP 28 (178)
T ss_dssp TSSHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHhcC
Confidence 7899999999998754
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.63 E-value=0.7 Score=46.06 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+++++...
T Consensus 59 GtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 59 GTGKTLLARAVAGEAN 74 (476)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 7899999999998653
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.14 E-value=0.68 Score=45.53 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+||++|++.....
T Consensus 225 GtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 225 GTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp TSSHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHhCCC
Confidence 789999999999876543
No 223
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.67 E-value=1.1 Score=37.32 Aligned_cols=16 Identities=0% Similarity=0.013 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 11 GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 11 CCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999987753
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.53 E-value=0.71 Score=49.07 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||+||++|++....
T Consensus 248 GTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 248 GTGKTLIARAVANETGA 264 (806)
T ss_dssp TSCHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 78999999999986543
No 225
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.52 E-value=0.64 Score=46.59 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||++|+++++..
T Consensus 248 GtGKT~lAraia~~~ 262 (489)
T 3hu3_A 248 GTGKTLIARAVANET 262 (489)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998765
No 226
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.04 E-value=1.3 Score=37.55 Aligned_cols=16 Identities=6% Similarity=0.385 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 11 GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 11 GVGKSTVLAKVKEILD 26 (194)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998775
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.72 E-value=0.7 Score=45.37 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||+||+++++.....
T Consensus 225 GTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 225 GTGKTLLARACAAQTNAT 242 (434)
T ss_dssp TSSHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 789999999999876543
No 228
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=72.18 E-value=1.2 Score=36.16 Aligned_cols=35 Identities=14% Similarity=-0.120 Sum_probs=21.4
Q ss_pred EEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 75 FLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 75 ~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
-.|+||++..-.......+...+.......+||.|
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~ 112 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGI 112 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEE
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 46899999544434444555544444455678777
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=71.45 E-value=1.4 Score=37.19 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 15 GsGKst~a~~La~~l 29 (185)
T 3trf_A 15 GAGKTSVGSQLAKLT 29 (185)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999999875
No 230
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.32 E-value=1.4 Score=37.74 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 10 GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 10 GAGKSTISAEISKKLG 25 (205)
T ss_dssp TSCHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHhcC
Confidence 7899999999998754
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.74 E-value=1.5 Score=37.74 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 35 GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 35 GAGKTTLGKAFARKLN 50 (199)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 7899999999998753
No 232
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.40 E-value=1.7 Score=36.89 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 13 GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 13 GVGSTTSSQLAMDNLR 28 (192)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998765
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.96 E-value=0.78 Score=44.77 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.6
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.|||.||+++++.....|
T Consensus 226 GTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 226 GTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp TTTHHHHHHHHHHHHTCEE
T ss_pred CchHHHHHHHHHHHhCCCE
Confidence 7899999999998765443
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=69.72 E-value=1.6 Score=37.54 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 28 GsGKSTla~~L~~~l 42 (202)
T 3t61_A 28 GSGKSSVGEAIAEAC 42 (202)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998875
No 235
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=69.39 E-value=1.7 Score=36.42 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 14 GsGKsTla~~La~~l~ 29 (175)
T 1via_A 14 GSGKSTLARALAKDLD 29 (175)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 6899999999998753
No 236
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.12 E-value=1.7 Score=41.10 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=22.7
Q ss_pred CchhHHHHHhhhcCCCCCCCCchHHHHHHHHHHHcCCCchHH
Q 047511 110 KDDCLQVFTQHCLGMRDFSMQQSLKDISEKIVIRCNGLPLPA 151 (471)
Q Consensus 110 ~~ea~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLal 151 (471)
.++-.+++...+-.... .--.+.+..|++.+.|.|-.+
T Consensus 182 ~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 182 VKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp HHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHH
Confidence 44556677665532211 112356788899999988654
No 237
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.93 E-value=2 Score=38.07 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.4
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++.....+
T Consensus 16 GvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 16 GVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHC
Confidence 799999999999887653
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.21 E-value=1.7 Score=39.09 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+++++..
T Consensus 55 GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 55 GTGKTLLAKAIAGEA 69 (257)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998765
No 239
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.12 E-value=1.8 Score=39.10 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||+++++...
T Consensus 54 GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 54 GTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7999999999998653
No 240
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.09 E-value=1.8 Score=36.10 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 14 GsGKSTl~~~La~~l 28 (173)
T 1kag_A 14 GAGKSTIGRQLAQQL 28 (173)
T ss_dssp TSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998864
No 241
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.61 E-value=1.9 Score=36.54 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 15 GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 15 ATGKTTLSQALATGL 29 (193)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998765
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.41 E-value=1.7 Score=41.65 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=36.9
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcCC-CcEEEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMSR-KKFLLVL 79 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LiVL 79 (471)
|+||||||..++..+...- ..+.+.+.... ...+.. ... .+....-....+.+.+++...++...+. +--+||+
T Consensus 84 GsGKTtlal~la~~~~~~g-~~vlyi~~E~s-~~~~~a-~~~--g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVI 158 (366)
T 1xp8_A 84 SGGKTTLALAIVAQAQKAG-GTCAFIDAEHA-LDPVYA-RAL--GVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVV 158 (366)
T ss_dssp TSSHHHHHHHHHHHHHHTT-CCEEEEESSCC-CCHHHH-HHT--TCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEE
T ss_pred CCChHHHHHHHHHHHHHCC-CeEEEEECCCC-hhHHHH-HHc--CCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 6899999999887764321 11222222110 011100 000 0000000011234566777777666543 4558999
Q ss_pred ecC
Q 047511 80 DDV 82 (471)
Q Consensus 80 DDV 82 (471)
|.+
T Consensus 159 Dsl 161 (366)
T 1xp8_A 159 DSV 161 (366)
T ss_dssp ECT
T ss_pred eCh
Confidence 998
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.29 E-value=2 Score=38.81 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||++++...
T Consensus 11 GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 11 CSGKTDMAIQIAQET 25 (253)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 689999999998765
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.29 E-value=1.8 Score=36.27 Aligned_cols=13 Identities=8% Similarity=0.021 Sum_probs=11.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||+|+.+..
T Consensus 12 GsGKST~a~~L~~ 24 (181)
T 1ly1_A 12 GSGKSTWAREFIA 24 (181)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 7899999999987
No 245
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=66.02 E-value=2.2 Score=35.89 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++.+
T Consensus 21 GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 21 GVGKTTLGKELASKS 35 (180)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998775
No 246
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=65.57 E-value=4.6 Score=38.15 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||..++..+..
T Consensus 56 G~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 56 SMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999887654
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.54 E-value=1.9 Score=36.64 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.++..
T Consensus 19 GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 19 GSGKSTIAEALANL 32 (191)
T ss_dssp TSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhc
Confidence 78999999999764
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.44 E-value=2.3 Score=36.03 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.++..+.
T Consensus 10 GsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 10 GVGKTTLVKKIVERLG 25 (178)
T ss_dssp TSSHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999998764
No 249
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.11 E-value=2.2 Score=38.33 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||++++....
T Consensus 59 G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 59 GVGKTHLARAVAGEAR 74 (254)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999997653
No 250
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.10 E-value=2.5 Score=36.41 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 35 GsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 35 GSGKSTLACALNQMLY 50 (200)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999998775
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=64.90 E-value=2.5 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.++..+..
T Consensus 23 GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 23 GSGKTTIATRLADLLQK 39 (186)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 78999999999987754
No 252
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=64.68 E-value=2.4 Score=36.57 Aligned_cols=17 Identities=6% Similarity=0.091 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 14 GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 14 GSGKSSQATLLKDWIEL 30 (213)
T ss_dssp TSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 68999999999987643
No 253
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=64.66 E-value=2.3 Score=35.73 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=9.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 15 GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 15 GVGKTHTAHTLHERLP 30 (183)
T ss_dssp ----CHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHhcC
Confidence 6899999999987643
No 254
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=64.51 E-value=2.4 Score=36.45 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.++...
T Consensus 39 GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 39 GSGKTTIAHGVADET 53 (200)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh
Confidence 789999999998765
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.48 E-value=2.2 Score=35.37 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=11.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.+ ..
T Consensus 11 GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 11 GSGKSEFAKLL-KE 23 (179)
T ss_dssp TSCHHHHHHHH-HH
T ss_pred CCCHHHHHHHH-HH
Confidence 78999999999 44
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.28 E-value=1.9 Score=41.14 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=36.5
Q ss_pred CCccchHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHcC-CCcEEEEE
Q 047511 1 MIGETNLSVSIEMLVNKLASEAILLFSLQEQIQSDLKKWKKILVFIATADQPVNGTDELGLLQEKLKNQMS-RKKFLLVL 79 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~~~~~~~~~lq~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LiVL 79 (471)
|+||||||.+++..+...-. .+.+.+... ..... ..+.+ .+...........+.++....++..++ .+.-++|+
T Consensus 71 GsGKSTLal~la~~~~~~gg-~VlyId~E~-s~~~~-ra~rl--gv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVI 145 (356)
T 3hr8_A 71 SSGKTTLALHAIAEAQKMGG-VAAFIDAEH-ALDPV-YAKNL--GVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVV 145 (356)
T ss_dssp TSSHHHHHHHHHHHHHHTTC-CEEEEESSC-CCCHH-HHHHH--TCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCC-eEEEEeccc-ccchH-HHHHc--CCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEe
Confidence 68999999999977654211 111111110 00111 11111 000000011133456666666665553 45568999
Q ss_pred ecC
Q 047511 80 DDV 82 (471)
Q Consensus 80 DDV 82 (471)
|.|
T Consensus 146 DSi 148 (356)
T 3hr8_A 146 DSV 148 (356)
T ss_dssp ECT
T ss_pred hHh
Confidence 998
No 257
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.24 E-value=2.3 Score=38.91 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||++++...
T Consensus 54 GtGKTtLakala~~~ 68 (274)
T 2x8a_A 54 GCGKTLLAKAVANES 68 (274)
T ss_dssp TSCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHc
Confidence 789999999998754
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=63.97 E-value=3.1 Score=44.83 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+.+++.+..
T Consensus 201 G~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 201 GVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 79999999999998744
No 259
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=63.95 E-value=2.6 Score=35.06 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 12 GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 12 GCGMTTVGRELARALG 27 (173)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998753
No 260
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=63.76 E-value=2.8 Score=35.95 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 12 G~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 12 GSGKTTAVINIATALSR 28 (206)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 79999999999988765
No 261
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=63.71 E-value=2.3 Score=39.10 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+++++..
T Consensus 64 GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 64 GNGKTLLARAVATEC 78 (297)
T ss_dssp SSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999999998865
No 262
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.35 E-value=2.7 Score=34.88 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 17 GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 17 GSGKSSLAQELGLALK 32 (168)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998753
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=63.26 E-value=2.8 Score=36.21 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 20 GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 20 RSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987643
No 264
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=63.19 E-value=3 Score=35.02 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||+..+...++.+
T Consensus 14 GsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 14 HSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhHhc
Confidence 689999999998876543
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.80 E-value=3.1 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+...+.
T Consensus 32 GsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 32 GSGKSTLSNPLAAALS 47 (208)
T ss_dssp TSCTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6899999999988775
No 266
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=62.79 E-value=2.7 Score=36.58 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 11 GvGKTT~a~~LA~~la~~ 28 (209)
T 3cwq_A 11 GVGKTTTAVHLSAYLALQ 28 (209)
T ss_dssp TSSHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 799999999999887654
No 267
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=62.69 E-value=3.1 Score=35.39 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+.+.+.
T Consensus 10 GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 10 GSGKSTQIQLLAQYLE 25 (197)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998764
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.69 E-value=2.8 Score=35.55 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 13 GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 13 GAGKGTQCARIVEKY 27 (196)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998764
No 269
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=62.65 E-value=2.7 Score=39.20 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||.++++...
T Consensus 162 GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 162 GIGKSYLLAAMAHELS 177 (308)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999876
No 270
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.51 E-value=2.6 Score=35.15 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 18 GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 18 GSGKSAVASEVAHQL 32 (175)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh
Confidence 789999999998764
No 271
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=62.35 E-value=2.8 Score=34.59 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+.+..
T Consensus 10 GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 10 CSGKSTVGSLLSRSL 24 (168)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998865
No 272
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.33 E-value=4.1 Score=43.14 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+.+++.+..
T Consensus 217 GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 217 GVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999987643
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.30 E-value=2.8 Score=35.30 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 14 GsGKST~~~~La~~l 28 (186)
T 3cm0_A 14 GAGKGTQASRLAQEL 28 (186)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998765
No 274
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.27 E-value=2.8 Score=35.28 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 12 GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 12 GSGKSTIGRRLAKAL 26 (184)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999998874
No 275
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=62.16 E-value=3.1 Score=35.98 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 19 GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 19 RAGKSTQSRKLVEALCA 35 (215)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999987654
No 276
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=62.14 E-value=2.8 Score=35.46 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 10 GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 10 GSGKTTQAKKLYEYLK 25 (195)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999998764
No 277
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.02 E-value=2.7 Score=39.93 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||+++++.+..
T Consensus 80 GtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 80 GTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TSSHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 79999999999998753
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.93 E-value=2.6 Score=35.79 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=11.8
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||++.+..
T Consensus 12 GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 12 GVGKSTTCKRLAA 24 (189)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 7899999999975
No 279
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=61.84 E-value=2.9 Score=35.61 Aligned_cols=16 Identities=6% Similarity=-0.107 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++....
T Consensus 22 GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 22 GSGKGTQCEKLVEKYG 37 (199)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999998753
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.81 E-value=2.8 Score=35.42 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 15 GsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 15 GVGRRHIKNTLITKH 29 (180)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhC
Confidence 789999999998754
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=61.09 E-value=3.1 Score=35.37 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 19 GsGKsT~~~~La~~l 33 (196)
T 2c95_A 19 GSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998865
No 282
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=60.67 E-value=3 Score=38.37 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++...
T Consensus 60 GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 60 GVGKTEIARRLAKLAN 75 (310)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7999999999998763
No 283
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=60.66 E-value=3.5 Score=35.55 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||.++.+++.++..
T Consensus 10 GsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 10 GSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 789999999999987653
No 284
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=60.65 E-value=3.1 Score=35.66 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 30 GsGKST~a~~La~~l 44 (201)
T 2cdn_A 30 GAGKGTQAVKLAEKL 44 (201)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998865
No 285
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=60.19 E-value=2.4 Score=36.73 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+...+.
T Consensus 10 GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 10 GAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6799999999988764
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.68 E-value=3.1 Score=35.85 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 22 GsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 22 GVGKGTLIKKVLSEF 36 (204)
T ss_dssp TSCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhC
Confidence 789999999998765
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=59.43 E-value=3.3 Score=36.90 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+++.+
T Consensus 37 GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 37 GSGKGTVCQRIAQNF 51 (246)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999999765
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=59.08 E-value=3.4 Score=36.03 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 14 GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 14 GAGKGTQAPNLQERFH 29 (220)
T ss_dssp TSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcC
Confidence 6899999999988753
No 289
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=58.90 E-value=3.3 Score=35.02 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=12.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.+++.
T Consensus 20 GsGKSTv~~~La~~ 33 (184)
T 1y63_A 20 GTGKTSMAEMIAAE 33 (184)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 68999999999876
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.55 E-value=3.6 Score=37.85 Aligned_cols=15 Identities=27% Similarity=0.116 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+++....
T Consensus 43 GsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 43 GSGKTSLRSAIFEET 57 (287)
T ss_dssp TSCTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998764
No 291
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=58.42 E-value=3.8 Score=36.91 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 29 GvGKTT~a~nLA~~la~ 45 (262)
T 2ph1_A 29 GVGKSTVTALLAVHYAR 45 (262)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987765
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=58.32 E-value=3.2 Score=35.63 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=11.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||+|+.++.
T Consensus 11 GsGKSTl~~~L~~ 23 (204)
T 2if2_A 11 GCGKSTVAQMFRE 23 (204)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 7899999999987
No 293
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=58.28 E-value=4 Score=36.85 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 14 GSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 14 GVGKSTFSKNLAKILS 29 (260)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999998754
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=58.27 E-value=3.1 Score=34.46 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.++..+
T Consensus 43 GaGKTTLlr~l~g~l 57 (158)
T 1htw_A 43 GAGKTTLTRGMLQGI 57 (158)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC
Confidence 689999999998765
No 295
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.19 E-value=3.6 Score=35.93 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 15 GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 15 ASGKGTQCELIKTKYQ 30 (222)
T ss_dssp TSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999998754
No 296
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=58.16 E-value=3.9 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 13 GvGKTt~a~~LA~~la~ 29 (260)
T 3q9l_A 13 GVGKTTSSAAIATGLAQ 29 (260)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 79999999999988765
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=57.94 E-value=3.7 Score=34.61 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 16 GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 16 GSGKGTQCANIVRDF 30 (194)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998764
No 298
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.86 E-value=3.9 Score=35.42 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 35 GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 35 ASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7899999999988765
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.85 E-value=3.3 Score=35.48 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=12.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.+...
T Consensus 17 GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 17 GAGKTSLVRALVKA 30 (205)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 78999999999865
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.81 E-value=3.5 Score=36.21 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 17 GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 17 GSGKGTVSSRITTHF 31 (227)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHc
Confidence 789999999998764
No 301
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.64 E-value=3.6 Score=37.94 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++...
T Consensus 57 GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 57 GVGKTELAKTLAATLF 72 (311)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHc
Confidence 7999999999998764
No 302
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=57.61 E-value=3.7 Score=37.08 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=15.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 11 GvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 11 GIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999988764
No 303
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=57.61 E-value=6.1 Score=34.31 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||.|+.++++.
T Consensus 10 GsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 10 GAGKGTQAKRLAKEK 24 (206)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 789999999998764
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=57.44 E-value=3.8 Score=35.52 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 10 GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 10 GAGKGTQAEQIIEKY 24 (216)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998764
No 305
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=56.90 E-value=3.9 Score=36.10 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 26 GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 26 GAGKGTQAPKLAKNFC 41 (233)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 7899999999998753
No 306
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.78 E-value=3.5 Score=37.19 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||++|+++++..
T Consensus 39 GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 39 GTGKELIASRLHYLS 53 (265)
T ss_dssp TSCHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHhc
Confidence 799999999998764
No 307
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=56.75 E-value=4.3 Score=35.68 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 13 GvGKTt~a~~LA~~la~~ 30 (237)
T 1g3q_A 13 GTGKTTVTANLSVALGDR 30 (237)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 799999999999887653
No 308
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=56.66 E-value=1.3 Score=35.97 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=20.1
Q ss_pred EEEEEecCCCCCcchhhhccccccCC-CCCcEEEee
Q 047511 75 FLLVLDDVWNENYSDWDSLSLPFEAG-APGCQIILT 109 (471)
Q Consensus 75 ~LiVLDDVw~~~~~~~~~l~~~~~~~-~~gsriiiT 109 (471)
-.++||++-.-.......+...+... ..+.++|+|
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~ 112 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIAS 112 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 46889999544334444444433322 345778887
No 309
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=56.39 E-value=4.4 Score=35.28 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+..+
T Consensus 12 GvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 12 EVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 799999999998876653
No 310
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=56.25 E-value=4.4 Score=37.09 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 12 GvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 12 GIGKSTTTQNLVAALAE 28 (289)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 79999999999988765
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.99 E-value=4.2 Score=35.53 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 15 GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 15 GAGKGTLCKAMAEAL 29 (227)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998764
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.99 E-value=4.4 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.++....
T Consensus 11 G~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 11 GVGKTTLIHKASEVLK 26 (189)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhcc
Confidence 7899999999987664
No 313
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=55.93 E-value=4.5 Score=37.43 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 51 GvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 51 GIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 79999999999988765
No 314
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=55.68 E-value=4.2 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||++..++....
T Consensus 24 GvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 24 GSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999986654
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.59 E-value=3.8 Score=35.50 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 18 GsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 18 GVGKGTVREAVFKDP 32 (208)
T ss_dssp TSCHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHhhC
Confidence 789999999998764
No 316
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=55.57 E-value=3.6 Score=36.45 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 15 GvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 15 GDGGSCIAANFAFALSQE 32 (245)
T ss_dssp TSSHHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHhC
Confidence 799999999999887654
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=55.48 E-value=4.1 Score=34.92 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 25 GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 25 GAGKGTQCEKLVKDY 39 (203)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999998764
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=55.46 E-value=4.3 Score=35.00 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+...+.
T Consensus 16 GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 16 ASGKTTLAQALARTLG 31 (211)
T ss_dssp TSSHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999987654
No 319
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=55.39 E-value=7.3 Score=36.11 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 72 RKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 72 ~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
+++-++|+|++-.-.....+.+...+....+.+++|++
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEE
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 45678899999444445566666666554556777666
No 320
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=55.32 E-value=4.4 Score=35.18 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+++.+++.+.
T Consensus 12 GsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 12 GSGKTTVINEVYHRLV 27 (205)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7899999999998774
No 321
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=55.10 E-value=4.1 Score=35.31 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=12.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++...
T Consensus 10 GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 10 GAGKGTQGERIVEKY 24 (216)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999997653
No 322
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.04 E-value=4.7 Score=37.77 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|.+++..+...
T Consensus 24 GvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 24 GVGKTTISAATALWMARS 41 (324)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHC
Confidence 799999999999876653
No 323
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=54.96 E-value=4.5 Score=33.87 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 15 GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 15 GAGKTTVSMALEEYLV 30 (179)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6899999999988764
No 324
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=54.53 E-value=2.9 Score=37.07 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 10 GvGKTt~a~~LA~~la~ 26 (254)
T 3kjh_A 10 GVGKTTVAAGLIKIMAS 26 (254)
T ss_dssp SHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999988654
No 325
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.50 E-value=4.6 Score=35.05 Aligned_cols=15 Identities=13% Similarity=0.003 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++..
T Consensus 10 GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 10 VAGKGTQAQFIMEKY 24 (214)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998765
No 326
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.35 E-value=4.6 Score=35.17 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 15 GsGKsT~a~~La~~l 29 (217)
T 3be4_A 15 GSGKGTQCEFIKKEY 29 (217)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998875
No 327
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=54.28 E-value=4.2 Score=38.90 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||+|+++++..
T Consensus 82 GtGKT~la~~la~~l 96 (376)
T 1um8_A 82 GSGKTLMAQTLAKHL 96 (376)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999999999876
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=54.03 E-value=4.2 Score=34.85 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=12.8
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+....
T Consensus 16 GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 16 GVGKGTVRKRIFEDP 30 (207)
T ss_dssp TSCHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHhh
Confidence 789999999997654
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.03 E-value=4.4 Score=34.28 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+.....
T Consensus 11 GaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 11 GTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHhhCC
Confidence 7899999999987654
No 330
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.01 E-value=4.7 Score=35.35 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 10 GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 10 GSGKGTQGNLVKDKY 24 (223)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998765
No 331
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=54.00 E-value=4.4 Score=35.96 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+++.+.
T Consensus 12 g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 12 AVGKSTFVKLLTKTYP 27 (241)
T ss_dssp TSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 7899999999998753
No 332
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.99 E-value=3.5 Score=43.78 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||.||+++++....
T Consensus 521 GtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 521 GCGKTLLAKAIANECQA 537 (806)
T ss_dssp TSSHHHHHHHHHHTTTC
T ss_pred CCCchHHHHHHHHHhCC
Confidence 68999999999987543
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.96 E-value=4.3 Score=38.14 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||+++++...
T Consensus 55 GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 55 GTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCTTHHHHHHHHHSC
T ss_pred CccHHHHHHHHHHhCc
Confidence 7899999999998754
No 334
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=53.95 E-value=5.3 Score=33.62 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.+...+..
T Consensus 16 GsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 16 GTGKTTLLKKLIPALCA 32 (174)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 68999999999877543
No 335
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.80 E-value=4.2 Score=34.74 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+.+.+
T Consensus 14 GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 14 KSGKTTQCMNIMESI 28 (204)
T ss_dssp TSSHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHH
Confidence 689999999998765
No 336
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=53.67 E-value=5.2 Score=36.83 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||||+.+...+...
T Consensus 41 GsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 41 GSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp TSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 689999999999887653
No 337
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=53.54 E-value=5.1 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 47 GvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 47 GVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHh
Confidence 79999999999988764
No 338
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=53.37 E-value=5.3 Score=35.83 Aligned_cols=17 Identities=12% Similarity=0.343 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 13 GvGKTt~a~~LA~~la~ 29 (263)
T 1hyq_A 13 GTGKTTITANLGVALAQ 29 (263)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999988765
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=53.17 E-value=5.6 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+...+.
T Consensus 32 GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 32 RSGKTTLANQLSQTLR 47 (201)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6899999999987664
No 340
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=52.95 E-value=5.3 Score=36.54 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 15 GvGKTT~a~nLA~~La~ 31 (286)
T 2xj4_A 15 GAGKSTIAVHLVTALLY 31 (286)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999988765
No 341
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=52.90 E-value=5.8 Score=34.52 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.++....
T Consensus 33 GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 33 GTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999999986654
No 342
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=52.81 E-value=6 Score=37.56 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCccchHHHHHHHHHHHhh
Q 047511 1 MIGETNLSVSIEMLVNKLA 19 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~~ 19 (471)
|.||||+|+.++..+...|
T Consensus 34 G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 34 GSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCCe
Confidence 7899999999999876555
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.74 E-value=5.1 Score=39.71 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|+++++.+..
T Consensus 211 G~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 211 GVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp TTTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999988643
No 344
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.60 E-value=4.2 Score=35.38 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|.++++.++
T Consensus 68 GtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 68 NTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp GGCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999987653
No 345
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=52.56 E-value=4.7 Score=36.33 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|..++..+.
T Consensus 38 GvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 38 GVGKSTSAIILATLLS 53 (267)
T ss_dssp SSCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHH
Confidence 7999999999998876
No 346
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.27 E-value=4.7 Score=38.33 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||++|+++++..
T Consensus 61 GtGKT~la~~ia~~~ 75 (363)
T 3hws_A 61 GSGKTLLAETLARLL 75 (363)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 799999999999875
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=52.12 E-value=5.2 Score=35.62 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||+.+...+
T Consensus 35 GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 35 ASGKSTVCEKIMELL 49 (245)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999998765
No 348
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=51.57 E-value=5.4 Score=34.11 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 12 GsGKst~~~~la~~lg 27 (208)
T 3ake_A 12 ASGKSSVARRVAAALG 27 (208)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC
Confidence 6899999999988653
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.56 E-value=4.7 Score=36.14 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+.....
T Consensus 42 GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 42 GAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp GGTTHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcC
Confidence 6899999999987653
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=51.25 E-value=4.6 Score=34.85 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=12.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 30 GsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 30 AVGKSTVVRCLRERI 44 (207)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhhC
Confidence 789999999987654
No 351
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=51.16 E-value=4.5 Score=36.29 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 17 GvGKTt~a~~LA~~la~~ 34 (257)
T 1wcv_1 17 GVGKTTTAINLAAYLARL 34 (257)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHC
Confidence 799999999999887653
No 352
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.00 E-value=4.7 Score=35.16 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.++-.
T Consensus 35 GsGKSTll~~l~g~ 48 (231)
T 4a74_A 35 GSGKTQLAHTLAVM 48 (231)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 78999999999864
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=50.99 E-value=5.4 Score=34.40 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||||++++.....
T Consensus 29 GaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 29 GVGRSHIKNALLSQNP 44 (197)
T ss_dssp TSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhhCC
Confidence 7899999999987643
No 354
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=50.82 E-value=5.6 Score=37.73 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|.+++..+..
T Consensus 36 GvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 36 GVGKTTMSAATGVYLAE 52 (349)
T ss_dssp STTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 79999999999877654
No 355
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.21 E-value=5.4 Score=37.32 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||||+.++..+
T Consensus 15 GsGKTtla~~La~~l 29 (323)
T 3crm_A 15 AAGKTDLAMALADAL 29 (323)
T ss_dssp TSCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999999875
No 356
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.19 E-value=5.6 Score=39.27 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||+||+++++.+.
T Consensus 73 GtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 73 GTGKTALALAIAQELG 88 (456)
T ss_dssp TSSHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhC
Confidence 7899999999998864
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=50.14 E-value=6.1 Score=36.83 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.+...+..
T Consensus 100 GsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 100 AVGKSTTARVLQALLAR 116 (312)
T ss_dssp TSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHhhccc
Confidence 78999999999887653
No 358
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.12 E-value=4.9 Score=35.56 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.5
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||++.+..
T Consensus 40 GsGKSTLl~~i~~ 52 (251)
T 2ehv_A 40 GTGKTTFAAQFIY 52 (251)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7899999998874
No 359
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=50.01 E-value=5 Score=34.70 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=11.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||||+.++.
T Consensus 30 GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 30 ASGKTTLALQTGL 42 (220)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7899999999987
No 360
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.95 E-value=5.9 Score=34.43 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.++-.
T Consensus 32 GsGKSTLl~~l~Gl 45 (208)
T 3b85_A 32 GSGKTYLAMAKAVQ 45 (208)
T ss_dssp TSSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999999876
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.95 E-value=5.7 Score=33.86 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||||++++.....
T Consensus 11 G~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 11 GTGKSTLLKKLFAEYP 26 (186)
T ss_dssp TSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 7999999999877643
No 362
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=49.81 E-value=6.2 Score=36.44 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 115 GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 115 GAGKTTTLAKLAAISML 131 (296)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987654
No 363
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=49.21 E-value=6.5 Score=36.15 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=11.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+.+.+.
T Consensus 15 GSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 15 GAGTSTVKHTFDQIFR 30 (290)
T ss_dssp ---CCTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6799999999988664
No 364
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=49.20 E-value=7 Score=33.14 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=22.2
Q ss_pred HHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 67 KNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 67 ~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
.+.+.++.-+|++|.+-.-+.+ |......+.. .|..||+|
T Consensus 70 ~~~~~~~~dvviIDE~Q~~~~~-~~~~l~~l~~--~~~~Vi~~ 109 (184)
T 2orw_A 70 RKYIEEDTRGVFIDEVQFFNPS-LFEVVKDLLD--RGIDVFCA 109 (184)
T ss_dssp GGGCCTTEEEEEECCGGGSCTT-HHHHHHHHHH--TTCEEEEE
T ss_pred HHHhcCCCCEEEEECcccCCHH-HHHHHHHHHH--CCCCEEEE
Confidence 3344445679999998432223 3333332322 27788888
No 365
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.06 E-value=4.4 Score=37.93 Aligned_cols=16 Identities=6% Similarity=0.015 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+|||+||+++++...
T Consensus 56 GtGKT~la~~la~~~~ 71 (331)
T 2r44_A 56 GLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 7899999999988653
No 366
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=48.91 E-value=7 Score=37.38 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+...
T Consensus 154 GvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 154 GVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TSSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 799999999999887653
No 367
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=48.75 E-value=5.7 Score=34.06 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 14 GaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 14 GAGKSTLLKKLFQEH 28 (198)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhC
Confidence 789999999998754
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=48.75 E-value=6.3 Score=35.07 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+.+..
T Consensus 39 GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 39 GSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999998764
No 369
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=48.63 E-value=5.7 Score=33.81 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.++..
T Consensus 18 GsGKST~~~~La~~ 31 (203)
T 1uf9_A 18 GSGKSTVAALLRSW 31 (203)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHC
Confidence 68999999999875
No 370
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=48.57 E-value=7.3 Score=34.38 Aligned_cols=18 Identities=11% Similarity=-0.145 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.||||+++.+++.+...
T Consensus 35 GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 35 GAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 689999999999887654
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=48.19 E-value=5.5 Score=34.23 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.6
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+....
T Consensus 31 GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 31 NSGKTTLAKNLQKHL 45 (207)
T ss_dssp TSSHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhc
Confidence 689999999998653
No 372
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=47.85 E-value=7.2 Score=35.76 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|.|||||++.++..+...
T Consensus 45 G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 45 GMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 789999999998876543
No 373
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=47.78 E-value=5.7 Score=34.72 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=12.9
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.|||||++.+....
T Consensus 33 GsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 33 GVGKGTLIKKLLNEF 47 (218)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhhC
Confidence 789999999998754
No 374
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=47.51 E-value=4.7 Score=37.93 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.4
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+++.+++.+..
T Consensus 17 GaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 17 GIGKSTTGRVMASAASG 33 (334)
T ss_dssp TSSHHHHHHHHHSGGGC
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 78999999999887643
No 375
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=47.43 E-value=7.4 Score=36.05 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.++..+..
T Consensus 110 GsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 110 GGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999987653
No 376
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=47.03 E-value=4 Score=38.39 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+++.+++.+..
T Consensus 14 GsGKTT~~~~La~~L~~ 30 (331)
T 1e2k_A 14 GMGKTTTTQLLVALGSR 30 (331)
T ss_dssp TSSHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 78999999999887653
No 377
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.81 E-value=6.6 Score=37.02 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+.++..+.
T Consensus 17 gSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 17 ASGKTELSIEVAKKFN 32 (340)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHcC
Confidence 6899999999988653
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=46.52 E-value=6.8 Score=35.10 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 37 GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 37 GAGKGTLCKALAESLN 52 (252)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcC
Confidence 7899999999997653
No 379
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=46.37 E-value=6.8 Score=36.40 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||||..++..+
T Consensus 20 gsGKt~la~~La~~~ 34 (316)
T 3foz_A 20 ASGKTALAIELRKIL 34 (316)
T ss_dssp TSCHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHhC
Confidence 689999999999874
No 380
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=46.35 E-value=7.3 Score=34.36 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+++.+.+.+.
T Consensus 36 GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 36 GSGKTTVINEVYHRLV 51 (229)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999999998765
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.19 E-value=6.2 Score=33.85 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=11.6
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||+++.+..
T Consensus 12 GsGKST~~~~La~ 24 (206)
T 1jjv_A 12 GSGKTTIANLFTD 24 (206)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 6899999999976
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=46.17 E-value=7.4 Score=34.94 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+++.++..+.
T Consensus 58 GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 58 GSGKTTVGKIMARSLG 73 (250)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC
Confidence 6899999999998654
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=46.14 E-value=6.6 Score=33.20 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||.+.+..
T Consensus 39 g~GKSTLl~~l~~ 51 (191)
T 1oix_A 39 GVGKSNLLSRFTR 51 (191)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 6899999988764
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=46.06 E-value=8.4 Score=33.90 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+.+.+..
T Consensus 31 g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 31 GSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 68999999999987755
No 385
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=45.99 E-value=7 Score=34.93 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.+...+.
T Consensus 32 GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 32 ASGKSSVCAKIVQLLG 47 (252)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhh
Confidence 6899999999987654
No 386
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.94 E-value=6.1 Score=34.72 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=7.3
Q ss_pred CCccchHHHHHH-HHH
Q 047511 1 MIGETNLSVSIE-MLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~-~~~ 15 (471)
|.|||||++.+. ...
T Consensus 37 GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 37 GCGKTTVANKLLEKQK 52 (231)
T ss_dssp C----CHHHHHHC---
T ss_pred CCCHHHHHHHHHhcCC
Confidence 789999999998 553
No 387
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=45.89 E-value=5.1 Score=38.35 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+++.+++.+..
T Consensus 59 GsGKTT~~~~Lae~L~~ 75 (376)
T 1of1_A 59 GMGKTTTTQLLVALGSR 75 (376)
T ss_dssp TSSHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 79999999999887653
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=45.71 E-value=9.6 Score=37.28 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++.....
T Consensus 109 GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 109 GSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987764
No 389
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.53 E-value=7.2 Score=34.15 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||.+.+.....
T Consensus 26 GsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 26 GAGKSSLIQALLKTQP 41 (219)
T ss_dssp TSCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhccCC
Confidence 7899999999987653
No 390
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=45.43 E-value=8.3 Score=35.78 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||++..++..+..
T Consensus 114 GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 114 GTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHh
Confidence 78999999999988754
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=45.31 E-value=5.6 Score=34.39 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+||||||.++..+
T Consensus 44 GsGKStLA~~La~~ 57 (205)
T 2qmh_A 44 GVGKSETALELVQR 57 (205)
T ss_dssp TTTTHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 68999999999865
No 392
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=45.05 E-value=6.6 Score=34.52 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||||+.++..
T Consensus 34 GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 34 RTGKTQICHTLAVT 47 (243)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 68999999999875
No 393
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.00 E-value=7.1 Score=39.03 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.4
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||++++...
T Consensus 74 GtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 74 GVGKTHLARAVAGEA 88 (499)
T ss_dssp SSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 789999999999765
No 394
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=44.92 E-value=7.9 Score=33.76 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+.+.+..
T Consensus 16 gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 16 GAGKSTNRDYLAERLRE 32 (213)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999887754
No 395
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=44.87 E-value=8.5 Score=35.84 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
||||||.|..++-.+..
T Consensus 58 GVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 58 GIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 89999999888877655
No 396
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=44.72 E-value=7.4 Score=35.69 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.+...
T Consensus 12 GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 12 GSGKSTWAREFIAK 25 (301)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 68999999999874
No 397
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.64 E-value=7.5 Score=39.33 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||++++.....
T Consensus 118 GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 118 GVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SSSHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 79999999999987643
No 398
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=44.23 E-value=5.4 Score=37.56 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||..++.++.
T Consensus 50 gsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 50 GTGKSRLSIDLAAHFP 65 (339)
T ss_dssp TSSHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHCC
Confidence 6899999999998753
No 399
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=44.13 E-value=6.9 Score=34.84 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 34 GsGKSTLl~~l~G 46 (240)
T 2onk_A 34 GAGKSVFLELIAG 46 (240)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 7899999998864
No 400
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=44.06 E-value=7.6 Score=36.43 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 29 GvGKTTva~~LA~~lA~ 45 (329)
T 2woo_A 29 GVGKTTTSCSLAIQMSK 45 (329)
T ss_dssp SSSHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 79999999999987664
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=44.04 E-value=7.8 Score=33.61 Aligned_cols=15 Identities=20% Similarity=-0.035 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||||+..+....
T Consensus 48 gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 48 GSGKTLLIEKLIDNL 62 (226)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 799999998887653
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=43.78 E-value=8.5 Score=34.11 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||+|+.++..+.
T Consensus 19 GsGKsTla~~la~~lg 34 (233)
T 3r20_A 19 GTGKSSVSRGLARALG 34 (233)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6899999999987753
No 403
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=43.75 E-value=6.9 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 12 GvGKTT~a~nLA~~LA~ 28 (361)
T 3pg5_A 12 GVGKTTLSTNVAHYFAL 28 (361)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 79999999999988765
No 404
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=43.72 E-value=7.6 Score=32.98 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||.+.+..
T Consensus 15 g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 15 GVGKSNLLSRFTR 27 (199)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 6899999988764
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=43.57 E-value=7.6 Score=33.65 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=11.6
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||+|+.+..
T Consensus 14 GSGKST~~~~L~~ 26 (218)
T 1vht_A 14 GSGKSTVANAFAD 26 (218)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6899999999976
No 406
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.47 E-value=8.9 Score=35.52 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.++.....
T Consensus 112 GsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 112 GVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 78999999999977543
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=43.40 E-value=9.6 Score=33.21 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+++.+..
T Consensus 13 gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 13 GAGKTTARNVVVETLEQ 29 (213)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999988765
No 408
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=43.32 E-value=7.9 Score=31.16 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=11.5
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||..++.+.
T Consensus 11 ~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 11 NVGKSSLFNRLLKK 24 (161)
T ss_dssp TSSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhCC
Confidence 68999999888653
No 409
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=43.26 E-value=7.9 Score=31.16 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=10.7
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++..
T Consensus 13 ~~GKssl~~~l~~ 25 (166)
T 2ce2_X 13 GVGKSALTIQLIQ 25 (166)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 6899999887754
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=43.25 E-value=8.2 Score=33.35 Aligned_cols=15 Identities=20% Similarity=-0.048 Sum_probs=12.7
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||||+.++....
T Consensus 40 g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 40 GSGKTLLIERTIERI 54 (221)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999887664
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=43.12 E-value=6.1 Score=34.73 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=11.0
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 40 GsGKSTLl~~l~G 52 (224)
T 2pcj_A 40 GSGKSTLLYILGL 52 (224)
T ss_dssp TSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 7899999998763
No 412
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=42.90 E-value=9.5 Score=35.61 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 115 G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 115 GTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999987764
No 413
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=42.52 E-value=10 Score=33.34 Aligned_cols=16 Identities=19% Similarity=-0.118 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||..++....
T Consensus 33 GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 33 GTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7899999988876654
No 414
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=42.51 E-value=7.5 Score=36.59 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|.+++..+..
T Consensus 26 GvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 26 GVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp TSSHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHh
Confidence 79999999999877654
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=42.50 E-value=8.7 Score=32.84 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.||||+|+.+...
T Consensus 22 GSGKSTva~~L~~~ 35 (192)
T 2grj_A 22 GTGKSTVCEILKNK 35 (192)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 68999999999876
No 416
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=42.39 E-value=9.8 Score=35.67 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.++..++.
T Consensus 139 GaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 139 GSGKTTTIAKLANWLKN 155 (328)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 78999999999987654
No 417
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=42.29 E-value=12 Score=34.57 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 108 G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 108 GTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CSSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987654
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=42.09 E-value=9.6 Score=34.56 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||..++..+
T Consensus 40 GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 40 GAGKSMLALQLAAQI 54 (279)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 689999999887644
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=42.07 E-value=8.2 Score=35.94 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.2
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+||||||..++..+
T Consensus 13 gsGKt~la~~La~~~ 27 (322)
T 3exa_A 13 AVGKTKTSVMLAKRL 27 (322)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhC
Confidence 689999999998764
No 420
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=42.03 E-value=8.5 Score=37.74 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|++++....
T Consensus 60 GtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 60 GVGKTEIARRLAKLAN 75 (444)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 7899999999998853
No 421
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.03 E-value=8.6 Score=35.55 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=13.1
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||++|+++++..
T Consensus 35 GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 35 GTGKELVARALHACS 49 (304)
T ss_dssp TSCHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHhC
Confidence 799999999998753
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=42.01 E-value=10 Score=36.13 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.++..+..
T Consensus 167 GsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 167 GGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhccc
Confidence 78999999999987654
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=41.95 E-value=7.8 Score=34.70 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.6
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 39 GsGKSTLlk~l~G 51 (250)
T 2d2e_A 39 GAGKSTLGKILAG 51 (250)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 7899999998875
No 424
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.76 E-value=8 Score=32.29 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.8
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||+.+++--
T Consensus 36 GsGKStll~ai~~~ 49 (182)
T 3kta_A 36 GSGKSNIGDAILFV 49 (182)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999999998753
No 425
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=41.75 E-value=10 Score=34.96 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 108 G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 108 GSGKTTTAAKLALYYKG 124 (295)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999987654
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=41.65 E-value=11 Score=33.57 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|+.+++.+..
T Consensus 37 GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 37 GAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999987754
No 427
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=41.37 E-value=10 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|.+++..+.
T Consensus 28 GvGKTt~a~~lA~~la 43 (348)
T 3io3_A 28 GVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7999999999987665
No 428
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=41.17 E-value=8.2 Score=34.99 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.4
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 56 GsGKSTLlk~l~G 68 (267)
T 2zu0_C 56 GSGKSTLSATLAG 68 (267)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 7899999998875
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=41.12 E-value=3.9 Score=36.91 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.+++.+
T Consensus 34 GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 34 AAGKSTFVNILKQLC 48 (263)
T ss_dssp TSSHHHHHTTTGGGC
T ss_pred CCCHHHHHHHHHHhc
Confidence 789999999988765
No 430
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=41.02 E-value=11 Score=33.13 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCcE-EEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 59 LGLLQEKLKNQMSRKKF-LLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 59 ~~~~~~~l~~~L~~kr~-LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
..++.+.+++.+.+.++ +||+|.+-.-+.++++.+. .+.. .|-.||+|
T Consensus 74 ~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~ 122 (223)
T 2b8t_A 74 APEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIIS 122 (223)
T ss_dssp THHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEE
Confidence 44555566665555555 9999998322223433332 2222 37788888
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.81 E-value=6.4 Score=32.99 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=13.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.+......
T Consensus 12 GsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 12 DSGKTTLITRMMPILRE 28 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 46999999999876654
No 432
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=40.72 E-value=9.7 Score=38.12 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=14.9
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+|++++.++..
T Consensus 405 GsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 405 TVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CSCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999988764
No 433
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=40.70 E-value=9.1 Score=32.00 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=10.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||+.++..
T Consensus 31 ~~GKSsli~~l~~ 43 (190)
T 3con_A 31 GVGKSALTIQLIQ 43 (190)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999988764
No 434
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=40.23 E-value=10 Score=35.13 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||++.+...+.
T Consensus 90 GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 90 AVGKSTTARVLQALLS 105 (308)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999999987664
No 435
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=40.20 E-value=11 Score=35.85 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.8
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|.+++..+.
T Consensus 28 GvGKTTvaanLA~~lA 43 (354)
T 2woj_A 28 GVGKTTSSCSIAIQMA 43 (354)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7999999999987665
No 436
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.16 E-value=11 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 107 GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 107 GSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999987765
No 437
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=40.08 E-value=10 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|..++..+.
T Consensus 119 GvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 119 GVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 7999999999998876
No 438
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=39.92 E-value=9.8 Score=35.55 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.||||||+.+...+.
T Consensus 102 GSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 102 AVGKSTTSRVLKALLS 117 (321)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7899999999987654
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=39.88 E-value=10 Score=36.63 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.9
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||||..++..+.
T Consensus 12 gsGKttla~~La~~~~ 27 (409)
T 3eph_A 12 GVGKSQLSIQLAQKFN 27 (409)
T ss_dssp SSSHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHCC
Confidence 6899999999998754
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=39.76 E-value=8.5 Score=32.17 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||.+.+..
T Consensus 12 gvGKStLl~~l~~ 24 (184)
T 2zej_A 12 GSGKTTLLQQLMK 24 (184)
T ss_dssp TSSHHHHHHHHTC
T ss_pred CCCHHHHHHHHhc
Confidence 6899999988765
No 441
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=39.69 E-value=11 Score=36.82 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHh
Q 047511 1 MIGETNLSVSIEMLVNKL 18 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~~ 18 (471)
|+||||+|..++..+..+
T Consensus 110 GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 110 GAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp TSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 799999999999887664
No 442
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=39.67 E-value=9.7 Score=30.81 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=10.8
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++.+
T Consensus 15 ~~GKssl~~~l~~ 27 (168)
T 1z2a_A 15 AVGKSSMIQRYCK 27 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999988763
No 443
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=39.50 E-value=7.6 Score=34.55 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 42 GsGKSTLl~~l~G 54 (240)
T 1ji0_A 42 GAGKTTTLSAIAG 54 (240)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 7899999998864
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=39.44 E-value=7.6 Score=33.90 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=10.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 45 GsGKSTLlk~l~G 57 (214)
T 1sgw_A 45 GIGKTTLLKTIST 57 (214)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 7899999998764
No 445
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.16 E-value=7.7 Score=35.05 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 42 GsGKSTLlk~l~G 54 (262)
T 1b0u_A 42 GSGKSTFLRCINF 54 (262)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 7899999998764
No 446
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=39.16 E-value=7.7 Score=34.43 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.++..
T Consensus 41 GsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 41 GCGKSSLLSALLAE 54 (237)
T ss_dssp TSSHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999998765
No 447
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=39.06 E-value=7.7 Score=34.90 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 43 GsGKSTLlk~l~G 55 (257)
T 1g6h_A 43 GSGKSTLINVITG 55 (257)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 7899999998864
No 448
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=39.03 E-value=6.4 Score=39.39 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|+|||+||+++++..
T Consensus 51 GtGKT~LAraLa~~l 65 (500)
T 3nbx_X 51 GIAKSLIARRLKFAF 65 (500)
T ss_dssp SSSHHHHHHHGGGGB
T ss_pred hHHHHHHHHHHHHHH
Confidence 799999999998765
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=38.99 E-value=7.8 Score=35.08 Aligned_cols=13 Identities=8% Similarity=0.232 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 60 GsGKSTLlk~l~G 72 (263)
T 2olj_A 60 GSGKSTFLRCLNL 72 (263)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHc
Confidence 7899999998864
No 450
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.84 E-value=11 Score=39.84 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|+++++.+.
T Consensus 211 GtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 211 GVGKTAIAEGLAQQII 226 (758)
T ss_dssp TTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999998863
No 451
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.73 E-value=7.9 Score=34.31 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=10.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.+.-
T Consensus 41 GsGKSTLl~~l~G 53 (235)
T 3tif_A 41 GSGKSTMLNIIGC 53 (235)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 7899999988763
No 452
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=38.27 E-value=9.9 Score=35.83 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.9
Q ss_pred CCccchHH-HHHHHHHHH
Q 047511 1 MIGETNLS-VSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA-~~v~~~~~~ 17 (471)
|+||||++ +.+.+.+..
T Consensus 22 GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 22 GIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp SSCTTHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 78999999 999876543
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=38.23 E-value=9.8 Score=31.66 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=11.2
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++..
T Consensus 17 gvGKStL~~~l~~ 29 (188)
T 2wjg_A 17 NVGKSTIFNALTG 29 (188)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 6899999988864
No 454
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=38.02 E-value=11 Score=30.45 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.7
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++..
T Consensus 14 ~~GKssl~~~l~~ 26 (168)
T 1u8z_A 14 GVGKSALTLQFMY 26 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 6899999887764
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=37.87 E-value=8.3 Score=34.95 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||++.+.-
T Consensus 47 GsGKSTLl~~l~G 59 (266)
T 4g1u_C 47 GAGKSTLLRLLTG 59 (266)
T ss_dssp TSCHHHHHHHHTS
T ss_pred CCcHHHHHHHHhc
Confidence 7899999998864
No 456
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=37.56 E-value=12 Score=34.81 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=14.0
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||..++..+..
T Consensus 78 G~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 78 SMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999876543
No 457
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.53 E-value=8.5 Score=34.66 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 51 GsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 51 GAGKTTTLRIISTL 64 (256)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999988643
No 458
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=37.51 E-value=12 Score=36.78 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||++..++..+..
T Consensus 110 G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 110 GSGKTTTVAKLARYFQK 126 (443)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999987654
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=37.48 E-value=8.5 Score=34.48 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 36 GsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 36 GAGKSTLLARMAGM 49 (249)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhCC
Confidence 78999999988643
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.48 E-value=6.2 Score=34.75 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=12.1
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.+...
T Consensus 30 GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 30 GSGKTTYLNHFEKY 43 (230)
T ss_dssp TSCHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHhc
Confidence 78999999998764
No 461
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=37.39 E-value=10 Score=35.05 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=11.5
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||.+.++.
T Consensus 28 G~GKSTLl~~L~g 40 (301)
T 2qnr_A 28 GLGKSTLINSLFL 40 (301)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHhC
Confidence 7999999999875
No 462
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=37.35 E-value=8.6 Score=33.90 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=12.2
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++..
T Consensus 44 GsGKSTLl~~l~Gl 57 (229)
T 2pze_A 44 GAGKTSLLMMIMGE 57 (229)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 78999999998765
No 463
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.19 E-value=11 Score=34.24 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|.|||||.+.++....
T Consensus 12 GaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 12 GLGKSTLVNTLFKSQV 27 (270)
T ss_dssp SSSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhCCCC
Confidence 7899999999987643
No 464
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=37.02 E-value=10 Score=31.03 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=11.0
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++..
T Consensus 13 gvGKStL~~~l~~ 25 (165)
T 2wji_A 13 NVGKSTIFNALTG 25 (165)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHhC
Confidence 6899999988764
No 465
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=37.02 E-value=12 Score=30.15 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.8
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++..
T Consensus 10 ~~GKssl~~~l~~ 22 (164)
T 1r8s_A 10 AAGKTTILYKLKL 22 (164)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999988754
No 466
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.87 E-value=8.8 Score=34.98 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||++.+.--
T Consensus 44 GsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 44 GVGKSTLFQNFNGI 57 (275)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHcC
Confidence 78999999988643
No 467
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=36.84 E-value=8.8 Score=35.05 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=11.0
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 57 GsGKSTLlk~l~G 69 (279)
T 2ihy_A 57 GAGKTTLLNILNA 69 (279)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 7899999998764
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=36.74 E-value=13 Score=32.52 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.||||+++.+++.+..
T Consensus 15 g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 15 RTGKTTQCNILYKKLQP 31 (216)
T ss_dssp SSSHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 78999999999987654
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=36.72 E-value=8.9 Score=34.72 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=11.1
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.|||||.+.++-
T Consensus 43 GsGKSTLl~~i~G 55 (266)
T 2yz2_A 43 GSGKSTLLQIVAG 55 (266)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 7899999998764
No 470
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=36.63 E-value=8.9 Score=34.13 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=11.8
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 38 GsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 38 GGGKSTIFSLLERF 51 (243)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999988754
No 471
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=36.59 E-value=14 Score=35.02 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||.++...+..
T Consensus 71 GsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 71 SSGKTTVALHAVANAQA 87 (349)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999876643
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=36.54 E-value=12 Score=30.27 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=10.8
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++.+
T Consensus 13 ~~GKssli~~l~~ 25 (167)
T 1c1y_A 13 GVGKSALTVQFVQ 25 (167)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999888764
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=36.30 E-value=13 Score=32.66 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=13.0
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||+|+.++..+
T Consensus 26 gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 26 SSGKSTVAKIIAKDF 40 (236)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc
Confidence 689999999998764
No 474
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=36.25 E-value=9.1 Score=34.51 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 56 GsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 56 GSGKSTIAKLLYRF 69 (260)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcc
Confidence 78999999988643
No 475
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=36.23 E-value=9.1 Score=34.19 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 45 GsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 45 GSGKSTLTKLIQRF 58 (247)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999987643
No 476
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=36.19 E-value=12 Score=30.73 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=11.3
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||..++.+.
T Consensus 19 ~~GKssli~~l~~~ 32 (181)
T 2fn4_A 19 GVGKSALTIQFIQS 32 (181)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhC
Confidence 68999999887653
No 477
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=36.13 E-value=14 Score=33.37 Aligned_cols=17 Identities=6% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 93 G~GKTt~a~nLA~~lA~ 109 (271)
T 3bfv_A 93 GAGKSTIAANLAVAYAQ 109 (271)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 78999999999987664
No 478
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=35.88 E-value=14 Score=36.73 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.5
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|.|||||++.++..+..
T Consensus 303 GSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 303 GVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhhh
Confidence 78999999999987654
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=35.56 E-value=9.5 Score=34.65 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=12.0
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 55 GsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 55 GSGKSTVAALLQNL 68 (271)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 78999999988754
No 480
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=35.53 E-value=16 Score=32.97 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCcEEEEEecCCCCCcchhhhccccccCCCCCcEEEee
Q 047511 63 QEKLKNQMSRKKFLLVLDDVWNENYSDWDSLSLPFEAGAPGCQIILT 109 (471)
Q Consensus 63 ~~~l~~~L~~kr~LiVLDDVw~~~~~~~~~l~~~~~~~~~gsriiiT 109 (471)
...+...|....=+|++|... |.+....+.... ..|.-|++|
T Consensus 88 ~~~la~aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t 129 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGT 129 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEE
T ss_pred HHHHHHHHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEE
Confidence 445666665566688889994 444444333322 235556665
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=35.48 E-value=12 Score=31.19 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=10.2
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||.+.+.+
T Consensus 24 ~~GKssL~~~l~~ 36 (198)
T 3t1o_A 24 LSGKTTNLKWIYS 36 (198)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 6899999866654
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=35.31 E-value=12 Score=30.24 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.4
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++..
T Consensus 16 ~~GKssli~~l~~ 28 (170)
T 1z08_A 16 CVGKTSLVLRYCE 28 (170)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999877653
No 483
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=35.28 E-value=12 Score=36.13 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=8.7
Q ss_pred CCccchHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVN 16 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~ 16 (471)
|+||||+|..++..+.
T Consensus 122 GvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 122 GVSKTVSTVTLAHALR 137 (403)
T ss_dssp ------CHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 7999999999998776
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=35.26 E-value=9.6 Score=34.21 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|.|||||.+.++-.
T Consensus 41 GsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 41 GCGKSTLLDLLLGI 54 (253)
T ss_dssp SSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 78999999988653
No 485
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=35.21 E-value=12 Score=31.20 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=11.4
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+|||||..++...
T Consensus 58 g~GKSsll~~l~~~ 71 (193)
T 2ged_A 58 NSGKTSLLTLLTTD 71 (193)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcC
Confidence 68999999887653
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=35.14 E-value=13 Score=31.00 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=10.6
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++.+
T Consensus 17 ~vGKSsli~~l~~ 29 (184)
T 1m7b_A 17 QCGKTALLHVFAK 29 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 6899999987654
No 487
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=35.10 E-value=13 Score=29.94 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=10.5
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++..
T Consensus 13 ~~GKSsli~~l~~ 25 (167)
T 1kao_A 13 GVGKSALTVQFVT 25 (167)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999877654
No 488
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.04 E-value=13 Score=30.09 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=10.6
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++.+
T Consensus 13 ~~GKssli~~l~~ 25 (170)
T 1ek0_A 13 AVGKSSIVLRFVS 25 (170)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 6899999887753
No 489
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=34.89 E-value=13 Score=30.07 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.7
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++..
T Consensus 16 ~~GKssli~~l~~ 28 (170)
T 1r2q_A 16 AVGKSSLVLRFVK 28 (170)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999987754
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=34.88 E-value=11 Score=31.66 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.9
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+||||||.++..+
T Consensus 26 GaGKStlal~L~~r 39 (181)
T 3tqf_A 26 NIGKSELSLALIDR 39 (181)
T ss_dssp SSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 78999999988763
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=34.83 E-value=12 Score=34.17 Aligned_cols=13 Identities=8% Similarity=0.205 Sum_probs=11.5
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|.||||+|+.+..
T Consensus 85 GSGKSTva~~La~ 97 (281)
T 2f6r_A 85 GSGKSSVAQRLKN 97 (281)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6899999999983
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=34.80 E-value=12 Score=30.51 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.1
Q ss_pred CCccchHHHHHH
Q 047511 1 MIGETNLSVSIE 12 (471)
Q Consensus 1 ~iGKTtLA~~v~ 12 (471)
|+|||||..++.
T Consensus 14 ~vGKSsl~~~l~ 25 (175)
T 2nzj_A 14 GVGKTSLASLFA 25 (175)
T ss_dssp TSSHHHHHHHHH
T ss_pred CccHHHHHHHHh
Confidence 689999988765
No 493
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=34.75 E-value=13 Score=30.09 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=10.7
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++.+
T Consensus 16 ~~GKSsli~~l~~ 28 (170)
T 1z0j_A 16 GVGKSSIMWRFVE 28 (170)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999988753
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=34.72 E-value=11 Score=30.37 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.9
Q ss_pred CCccchHHHHHH
Q 047511 1 MIGETNLSVSIE 12 (471)
Q Consensus 1 ~iGKTtLA~~v~ 12 (471)
|+|||||..++.
T Consensus 12 ~~GKSsli~~l~ 23 (166)
T 3q72_A 12 GVGKSALARIFG 23 (166)
T ss_dssp TSSHHHHHHHHC
T ss_pred CCCHHHHHHHHc
Confidence 689999987764
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=34.67 E-value=12 Score=38.36 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=13.5
Q ss_pred CCccchHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLV 15 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~ 15 (471)
|.||||||++++..+
T Consensus 70 GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 70 GTGKSMLGQAMAELL 84 (604)
T ss_dssp TSSHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHhccC
Confidence 789999999999865
No 496
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=34.66 E-value=15 Score=33.76 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.8
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||+|..++..+..
T Consensus 115 G~GKTtva~nLA~~lA~ 131 (299)
T 3cio_A 115 DSGKTFVSSTLAAVIAQ 131 (299)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 78999999999987764
No 497
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=34.46 E-value=15 Score=34.75 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHHH
Q 047511 1 MIGETNLSVSIEMLVNK 17 (471)
Q Consensus 1 ~iGKTtLA~~v~~~~~~ 17 (471)
|+||||||.+++..+..
T Consensus 73 GsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 73 SSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68999999999877654
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=34.28 E-value=13 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=10.9
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
++|||||..++..
T Consensus 25 ~~GKSsli~~l~~ 37 (179)
T 1z0f_A 25 GVGKSCLLHQFTE 37 (179)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6899999988764
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=34.23 E-value=11 Score=30.55 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=10.7
Q ss_pred CCccchHHHHHHH
Q 047511 1 MIGETNLSVSIEM 13 (471)
Q Consensus 1 ~iGKTtLA~~v~~ 13 (471)
|+|||||..++..
T Consensus 13 ~~GKssli~~l~~ 25 (172)
T 2erx_A 13 GVGKSSLVLRFVK 25 (172)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 6899999987754
No 500
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=34.13 E-value=14 Score=32.44 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.6
Q ss_pred CCccchHHHHHHHH
Q 047511 1 MIGETNLSVSIEML 14 (471)
Q Consensus 1 ~iGKTtLA~~v~~~ 14 (471)
|+||||||..++.+
T Consensus 40 G~GKT~l~l~~~~~ 53 (251)
T 2zts_A 40 GTGKTTFAAQFIYK 53 (251)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 78999999987654
Done!