STRING 9.05 
  AT5G04600 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT5G04600
RNA recognition motif (RRM)-containing protein; RNA recognition motif (RRM)-containing protein; FUNCTIONS IN- RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA recognition motif (RRM)-containing protein (TAIR-AT3G47120.1); Has 7009 Blast hits to 6604 proteins in 494 [...] (222 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G25260
acidic ribosomal protein P0-related; acidic ribosomal protein P0-related; FUNCTIONS IN- structu [...] (235 aa)
      0.937
AT3G13230
RNA binding; RNA binding; FUNCTIONS IN- RNA binding; LOCATED IN- cellular_component unknown; EX [...] (215 aa)
      0.925
AT2G44860
60S ribosomal protein L24, putative; 60S ribosomal protein L24, putative; FUNCTIONS IN- structu [...] (159 aa)
      0.921
AT5G06360
ribosomal protein S8e family protein; ribosomal protein S8e family protein; FUNCTIONS IN- struc [...] (260 aa)
     0.918
AT5G14520
pescadillo-related; pescadillo-related; FUNCTIONS IN- transcription coactivator activity; INVOL [...] (590 aa)
     0.902
AT3G23620
brix domain-containing protein; brix domain-containing protein; FUNCTIONS IN- molecular_functio [...] (314 aa)
     0.899
NAP57
NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase; Encodes a putative pse [...] (565 aa)
     0.879
IMP4
IMP4; Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located i [...] (294 aa)
      0.879
AT1G23280
MAK16 protein-related; MAK16 protein-related; FUNCTIONS IN- molecular_function unknown; INVOLVE [...] (303 aa)
      0.872
SWA1
SWA1 (SLOW WALKER1); nucleotide binding; Encodes a transducin family nucleolar protein with six [...] (530 aa)
      0.869
 
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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
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