BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047513
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio
rerio GN=mki67ip PE=2 SV=2
Length = 269
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 10/161 (6%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
VLY+G + G +E ++ ++F QFG + RLR++R+KK TG SK +GF+EF EVA
Sbjct: 45 GVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKK-----TGGSKGYGFVEFECDEVA 99
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++VA+ M+ YL+ E I++ H+IPPE VH KL+ G +K + V R NK T ++
Sbjct: 100 KIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVT--RYNKTHTEDD 157
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECPEIVGYVMPAPKK 214
KK+ K+L + K RKR+ A I+Y+ P G+ P K
Sbjct: 158 VKKVGTKLLSKESKLRKRLAAKGIDYDFP---GFAAQIPAK 195
>sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1
Length = 276
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 7/149 (4%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
V+YIG I YE ++ +FSQFGT+ RLR++R+KK TG SK + ++EF EVA
Sbjct: 41 GVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKK-----TGNSKGYAYVEFECDEVA 95
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++VAD M+ YL E +L+ +PPE VH +L+ G +++ V R NK R+ E
Sbjct: 96 KIVADTMNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAV--SRYNKRRSEAE 153
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECP 202
KK+ +++L + K RKR+ I+Y+ P
Sbjct: 154 QKKMTQRMLSKENKVRKRLAEKGIDYDFP 182
>sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1827.05c PE=4 SV=1
Length = 276
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 5/113 (4%)
Query: 41 RKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSK 100
+K+ E K L K VLY+GR+ HGFYEK+M +FSQFG + RLR++RN+K TG SK
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRK-----TGSSK 146
Query: 101 HFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYK 153
H+ FIEF +VA VVA+ MH YLL+ +LQ +IP + VH +++G + +K
Sbjct: 147 HYAFIEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFK 199
>sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus laevis GN=mki67ipl PE=2 SV=2
Length = 278
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
V+YIG I E ++ +F+QFGT+ RLR++R+KK TG SK + ++E+ EVA
Sbjct: 41 GVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKK-----TGNSKGYAYVEYECDEVA 95
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++VAD M+ YL E +L+ + PE VH +L+ G N +++ V R N R EE
Sbjct: 96 KIVADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVT--RYNSKRNKEE 153
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECP 202
KK+ ++++ + K RKR+ I+Y+ P
Sbjct: 154 VKKMTQRMISKEYKLRKRLAEKGIDYDFP 182
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 94/152 (61%), Gaps = 7/152 (4%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
V+Y+G + YE ++ A+FSQFGT+ R R++R+KK TG SK +GF+EF +VA
Sbjct: 45 GVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKK-----TGNSKGYGFVEFESEDVA 99
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++ A+ M+ YL E +L+ H IPPE VH +L+R ++ +K + V KR N+ R+L +
Sbjct: 100 KIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAV--KRYNQNRSLVQ 157
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECPEIV 205
++ E+ K ++ RKR+ I+Y P +V
Sbjct: 158 KLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189
>sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo
sapiens GN=MKI67IP PE=1 SV=1
Length = 293
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 94/152 (61%), Gaps = 7/152 (4%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
V+Y+ + + E ++ ++FSQFGT+ R R++R+K+ TG SK + F+EF +VA
Sbjct: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKR-----TGNSKGYAFVEFESEDVA 99
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++VA+ M+ YL E +L+ H +PPE VH +L++ +N +K + V KR N+ RTL +
Sbjct: 100 KIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSV--KRYNRNRTLTQ 157
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECPEIV 205
++ E+ K ++ RK++ I+Y+ P ++
Sbjct: 158 KLRMEERFKKKERLLRKKLAKKGIDYDFPSLI 189
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
Query: 41 RKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSK 100
+K ++K L + ++Y+ R+ HGF+EKE+ +F+QFG +K +R+ARNKK TG S+
Sbjct: 78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKK-----TGNSR 132
Query: 101 HFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
H+GF+EF + E A + ++M+ YLL H+LQV ++P
Sbjct: 133 HYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLP 168
>sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus
norvegicus GN=Mki67ip PE=2 SV=1
Length = 271
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPE 111
+ V+Y+G + E ++ + +QFG I+R R++R+K+ TG S+ F F+EF +
Sbjct: 42 NSGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKR-----TGNSRGFAFVEFESED 96
Query: 112 VAEVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTL 171
VA++VA+ M YL E +L +P E VH L+ N + P + V KR N+ R
Sbjct: 97 VAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAV--KRYNQKRGH 154
Query: 172 EEHKKLMEKILKHDQKRRKRIEAASIEYECPEIVGYVMPAPKK 214
+ K+ + K ++ RK++ I+Y P + V+P PKK
Sbjct: 155 LQMLKMEYRFKKKEKLLRKKLAKKGIDYSFPSL---VLPKPKK 194
>sp|Q91VE6|MK67I_MOUSE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus
musculus GN=Mki67ip PE=2 SV=1
Length = 317
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
V+Y+G + E ++ + +QFG I R R++R+K+ TG SK + F+EF +VA
Sbjct: 47 GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKR-----TGNSKGYAFVEFESEDVA 101
Query: 114 EVVADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEE 173
++VA+ M YL E +L +P + VH L+ N + + V KR N+ R +
Sbjct: 102 KIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAV--KRYNRKRGHLQ 159
Query: 174 HKKLMEKILKHDQKRRKRIEAASIEYECPEIVGYVMPAPKKI 215
K+ + K ++ RK++ A I+Y P + V+P PK I
Sbjct: 160 MLKMEYRFKKKEKLLRKKLAAKGIDYSFPSL---VLPKPKNI 198
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAE 114
++IG ++ E +H+ FSQ G + ++I RNK+ TG+S+ +GF+EFN AE
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQ-----TGQSERYGFVEFNTHAAAE 139
Query: 115 VVADAMHGYLL 125
V + +G ++
Sbjct: 140 KVLQSYNGTMM 150
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 45 EEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGF 104
EE+ ++ K + +Y+ + E+E+ FSQ GTI ++ ++K GKSK FGF
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK------GKSKGFGF 348
Query: 105 IEFNDPEVAEVVADAMHGYLL 125
+ F+ PE A HG +
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMF 369
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 35 LEGGPGRKLPEE--KPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLR 92
L G GR+ + K + +A L + + E+E+ F +FG I+R+ +A++K+
Sbjct: 181 LRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKE-- 238
Query: 93 VLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 137
TG++K F F+ + D + A D + GY IL+ P
Sbjct: 239 ---TGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 37 GGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNT 96
GG R LP L + +RH ++++ F QFG +K + + R+ T
Sbjct: 28 GGRSRDLP---------TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRD-----YYT 73
Query: 97 GKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132
G + FGF++F DP A M GYLL L V
Sbjct: 74 GDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 109
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 31 DFLPLEGGPGRKL-PEEKPLVNK--AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIAR 87
+F P++G R + + P + K A ++I + K ++ FS FG I ++A
Sbjct: 97 NFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVAT 156
Query: 88 NKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHL-KLWR 146
++ TGKSK FG++ F + E A DA++G LL + ++++ P HL K R
Sbjct: 157 DE------TGKSKGFGYVHFEEDESASEAIDALNGMLL--NGQEIYVGP----HLSKKER 204
Query: 147 GFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHD 185
+ ++ V K +N T +E ++L+ K K D
Sbjct: 205 ESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTD 243
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
L+I + +K++ F+ +GTI + K+ GKSK FGF+ F+ PE A
Sbjct: 321 LFIKNLDDSIDDKKLEEEFAPYGTIT------SAKVMTTENGKSKGFGFVCFSTPEEA 372
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAE 114
VL++ ++ ++++H FS+FGTI + R+K+ TG S + FIEF + + E
Sbjct: 249 VLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKR-----TGDSLQYAFIEFENQKDCE 303
Query: 115 VVADAMHGYLLFEHILQVHL 134
M G L+ +H + V
Sbjct: 304 QAYFKMQGVLIDDHRIHVDF 323
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEV 112
+A +YIG + E ++ FS+FG + + R+K+ TGKSK F F+++ D
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKE-----TGKSKGFAFLKYEDQRS 84
Query: 113 AEVVADAMHGYLLFEHILQV 132
+ D M L + +++V
Sbjct: 85 TVLAVDNMTNVKLLDRLVRV 104
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEV 112
+A +Y+G I E ++ A FSQ+G I + + R+K TGKSK F F+ + D
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDK-----GTGKSKGFAFLAYEDQRS 89
Query: 113 AEVVADAMHGYLLFEHILQV 132
+ D ++G L+ ++V
Sbjct: 90 TILAVDNLNGALVLGRTIKV 109
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+G + E + F FG I + + ++ +TG+SK +GFI F+D E A
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS-----DTGRSKGYGFITFSDSECARR 319
Query: 116 VADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNCQYKPLD 156
+ ++G+ L ++V HV +L G + + D
Sbjct: 320 ALEQLNGFELAGRPMRVG-----HVTERLDGGTDITFPDGD 355
>sp|Q64368|DAZL_MOUSE Deleted in azoospermia-like OS=Mus musculus GN=Dazl PE=1 SV=1
Length = 298
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ +FF+++G++K ++I ++ TG S
Sbjct: 29 GYVLPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------TGVS 79
Query: 100 KHFGFIEF-NDPEVAEVVADAM--HG 122
K +GF+ F ND +V ++V + HG
Sbjct: 80 KGYGFVSFYNDVDVQKIVESQINFHG 105
>sp|Q86SG3|DAZ4_HUMAN Deleted in azoospermia protein 4 OS=Homo sapiens GN=DAZ4 PE=1 SV=2
Length = 579
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 29 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 79
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 80 KGYGFVSFVNDVDVQKIVGSQIH 102
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 194 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 244
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 245 KGYGFVSFVNDVDVQKIVGSQIH 267
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+G + E + F FG I+ +++ + + TG+SK +GFI F+D E A+
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----TGRSKGYGFITFSDSECAKK 306
Query: 116 VADAMHGYLL 125
+ ++G+ L
Sbjct: 307 ALEQLNGFEL 316
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 31 DFLPLEGGPGRKLPEEK-PLVNK--AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIAR 87
+++PL G P R + + P V + A ++I + K +H FS FG I ++A
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA- 156
Query: 88 NKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
V ++G+SK +GF+++ + E A+ + ++G LL + QV++ P
Sbjct: 157 -----VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK--QVYVGP 198
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
LY+G + + ++ F Q GT+ +R+ R+ L T +S +G++ F +P+ A
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD-----LVTRRSLGYGYVNFTNPQDA 90
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPE 111
+++ LY+ + ++++ FS FGT+ ++ R+ G SK GF+ F PE
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN------GTSKGSGFVAFATPE 369
Query: 112 VAEVVADAMHGYLLFEHILQVHL 134
A + G ++ L V +
Sbjct: 370 EATEAMSQLSGKMIESKPLYVAI 392
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 38 GPGRKLPEEKPLVNKA--AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLN 95
GP + E NK +Y+ + + ++ F ++G I + ++ +
Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE----- 251
Query: 96 TGKSKHFGFIEFNDPEVAEVVADAMHGY 123
GKSK FGF+ F + + A ++++G+
Sbjct: 252 -GKSKGFGFVNFENADDAARAVESLNGH 278
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+G + E + F FG I+ +++ + + TG+SK +GFI F+D E A+
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----TGRSKGYGFITFSDSECAKK 306
Query: 116 VADAMHGYLL 125
+ ++G+ L
Sbjct: 307 ALEQLNGFEL 316
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+G + E + F FG I+ +++ + + TG+SK +GFI F+D E A+
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----TGRSKGYGFITFSDSECAKK 306
Query: 116 VADAMHGYLL 125
+ ++G+ L
Sbjct: 307 ALEQLNGFEL 316
>sp|Q95192|DAZL_MACFA Deleted in azoospermia-like OS=Macaca fascicularis GN=DAZL PE=2
SV=3
Length = 295
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ +FF+++G++K ++I ++ TG S
Sbjct: 29 GYVLPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------TGVS 79
Query: 100 KHFGFIE-FNDPEVAEVVADAM--HG 122
K +GF+ FND +V ++V + HG
Sbjct: 80 KGYGFVSFFNDVDVQKIVESQINFHG 105
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE D M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + F+ FG+I ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + +F Q+G A + K+ + GKS+ FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGA------ALSVKVMTDDHGKSRGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDDMNG 253
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+Y+G I E + F+ FG IK + ++ + T K K F F+E+ PE A++
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPI-----TQKHKGFAFVEYEIPEGAQL 186
Query: 116 VADAMHGYLLFEHILQVHLIPPEHVHLKLWRGFNC--QYKPLDWVEVECKRLNKVRTLEE 173
+ M+G L+ ++K+ R N + +D V+ E K N++
Sbjct: 187 ALEQMNGALMGGR------------NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASI 234
Query: 174 HKKLMEKILK 183
H L E+ +K
Sbjct: 235 HPDLSEEDIK 244
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+Y+ I E+++ + F FG I ++A+ L K +GFIE+ + + +
Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHT-----HKGYGFIEYANKQAMDE 283
Query: 116 VADAMHGYLLFEHILQV--HLIPP 137
+M+ + L +L+V + PP
Sbjct: 284 AIASMNLFDLGGQLLRVGRSITPP 307
>sp|Q6DRC4|EIF3G_DANRE Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio
GN=eif3g PE=1 SV=1
Length = 293
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFND 109
+ A + + + E ++ F FG+I R+ +A++K NTG+SK F FI F+
Sbjct: 208 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-----NTGQSKGFAFISFHR 262
Query: 110 PEVAEVVADAMHGYLLFEHILQVHLIPPEH 139
E A + G+ IL V P +
Sbjct: 263 REDAARAIAGVSGFGYDHLILNVEWAKPSN 292
>sp|Q9BGN8|DAZL_CALJA Deleted in azoospermia-like OS=Callithrix jacchus GN=DAZL PE=2 SV=1
Length = 296
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ FF+++G++K ++I ++ TG S
Sbjct: 29 GYVLPEGKIMPN---TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR------TGVS 79
Query: 100 KHFGFIE-FNDPEVAEVVADAM--HG 122
K +GF+ FND +V ++V + HG
Sbjct: 80 KGYGFVSFFNDVDVQKIVESQINFHG 105
>sp|Q92904|DAZL_HUMAN Deleted in azoospermia-like OS=Homo sapiens GN=DAZL PE=1 SV=1
Length = 295
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ +FF+++G++K ++I ++ TG S
Sbjct: 29 GYILPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------TGVS 79
Query: 100 KHFGFIE-FNDPEVAEVVADAM--HG 122
K +GF+ FND +V ++V + HG
Sbjct: 80 KGYGFVSFFNDVDVQKIVESQINFHG 105
>sp|Q3ZC12|EIF3G_BOVIN Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus
GN=EIF3G PE=2 SV=1
Length = 320
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 21 PVSSDRKDAADFLP--LEGGPGRKLPEEKP--LVNKAAVLYIGRIRHGFYEKEMHAFFSQ 76
PV + + ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
FG+I R+ +A++K TG+SK F FI F+ E A + G+ IL V
Sbjct: 262 FGSISRIYLAKDK-----TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
Query: 137 P 137
P
Sbjct: 317 P 317
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE D M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + F FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F ++G A + K+ + GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGP------ALSVKVMTDDNGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|O75821|EIF3G_HUMAN Eukaryotic translation initiation factor 3 subunit G OS=Homo
sapiens GN=EIF3G PE=1 SV=2
Length = 320
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 21 PVSSDRKDAADFLP--LEGGPGRKLPEEKP--LVNKAAVLYIGRIRHGFYEKEMHAFFSQ 76
PV + + ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
FG+I R+ +A++K TG+SK F FI F+ E A + G+ IL V
Sbjct: 262 FGSISRIYLAKDK-----TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
Query: 137 P 137
P
Sbjct: 317 P 317
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 28 DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMHAFFSQFGTIKRLR 84
D +F ++G P R + + P + K+ V +++ + K ++ S FG I
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 85 IARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
+ V + SK +GF+ F E AE M+G LL
Sbjct: 130 V-------VCDENGSKGYGFVHFETHEAAERAIKKMNGMLL 163
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEV 112
A LY+G + E ++ FS G I +RI R+ L T S ++ ++ F +
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD-----LITSGSSNYAYVNFQHTKD 64
Query: 113 AEVVADAMH 121
AE D M+
Sbjct: 65 AEHALDTMN 73
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ ++F Q+GT+K ++I ++ TG S
Sbjct: 25 GYVLPEGKIMPN---TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR------TGVS 75
Query: 100 KHFGFIEFND 109
K +GF+ F D
Sbjct: 76 KGYGFVSFLD 85
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE + M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE + M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE + M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE + M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|Q5RK09|EIF3G_RAT Eukaryotic translation initiation factor 3 subunit G OS=Rattus
norvegicus GN=Eif3g PE=2 SV=1
Length = 320
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 21 PVSSDRKDAADFLP--LEGGPGRKLPEEKP--LVNKAAVLYIGRIRHGFYEKEMHAFFSQ 76
PV + + ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
FG+I R+ +A++K TG+SK F FI F+ E A + G+ IL V
Sbjct: 262 FGSISRIYLAKDK-----TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
Query: 137 P 137
P
Sbjct: 317 P 317
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
LY+ + G ++ + FS FGTI ++ ++ G+SK FGF+ F+ PE A
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKV-------MMEGGRSKGFGFVCFSSPEEATK 348
Query: 116 VADAMHGYLLFEHILQVHL 134
M+G ++ L V L
Sbjct: 349 AVTEMNGRIVATKPLYVAL 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 16 VSSQLPVSSDRK-DAADFLPLEGGPGRKL-PEEKPLVNKAAV--LYIGRIRHGFYEKEMH 71
V+ Q P ++R D +F ++G P R + + P + K+ V ++I + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
FS FG I ++ V + SK +GF+ F E AE + M+G LL
Sbjct: 117 DTFSAFGNILSCKV-------VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
+YI ++ + F +FG +++ ++ +GKSK FGF+ F E A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE------SGKSKGFGFVSFERHEDAQK 246
Query: 116 VADAMHG 122
D M+G
Sbjct: 247 AVDEMNG 253
>sp|Q9Z1D1|EIF3G_MOUSE Eukaryotic translation initiation factor 3 subunit G OS=Mus
musculus GN=Eif3g PE=1 SV=2
Length = 320
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 21 PVSSDRKDAADFLP--LEGGPGRKLPEEKP--LVNKAAVLYIGRIRHGFYEKEMHAFFSQ 76
PV + + ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136
FG+I R+ +A++K TG+SK F FI F+ E A + G+ IL V
Sbjct: 262 FGSISRIYLAKDK-----TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
Query: 137 P 137
P
Sbjct: 317 P 317
>sp|Q4V7Y4|DAZLB_XENLA Deleted in azoospermia-like-B OS=Xenopus laevis GN=dazl-b PE=2 SV=2
Length = 286
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ FF++FG +K ++I ++ TG S
Sbjct: 22 GFVLPEGKIMPN---TVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDR------TGVS 72
Query: 100 KHFGFIEFND 109
K +GFI F+D
Sbjct: 73 KGYGFISFSD 82
>sp|Q9NR90|DAZ3_HUMAN Deleted in azoospermia protein 3 OS=Homo sapiens GN=DAZ3 PE=1 SV=1
Length = 486
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 29 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 79
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 80 KGYGFVSFVNDVDVQKIVGSQIH 102
>sp|Q9NQZ3|DAZ1_HUMAN Deleted in azoospermia protein 1 OS=Homo sapiens GN=DAZ1 PE=1 SV=2
Length = 744
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 29 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 79
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 80 KGYGFVSFVNDVDVQKIVGSQIH 102
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 194 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 244
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 245 KGYGFVSFVNDVDVQKIVGSQIH 267
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 359 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 409
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 410 KGYGFVSFVNDVDVQKIVGSQIH 432
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDP 110
++IGR+ + E E+ +F +FG I+++RI ++K T KSK + FI F DP
Sbjct: 108 TIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKI-----TQKSKGYAFIVFKDP 158
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
L+I + F + E+ F FG I ++ ++ T +SK FGF+ F++P A+
Sbjct: 403 LFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRA-----TNQSKCFGFVSFDNPSSAQT 457
Query: 116 VADAMHGYLLFEHILQVHL 134
AM+G+ + L+V L
Sbjct: 458 AIQAMNGFQIGMKRLKVQL 476
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
L++G + E+E+ + F FG+I+ + R G SK F++F+ A+
Sbjct: 137 LFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPD------GSSKGCAFVKFSSHAEAQA 190
Query: 116 VADAMHG 122
A+HG
Sbjct: 191 AIQALHG 197
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
L++G+I EK++ F QFG I L + +++ TG K F+ + + A
Sbjct: 49 LFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRY-----TGMHKGCAFLTYCARDSAIK 103
Query: 116 VADAMH 121
A+H
Sbjct: 104 AQTALH 109
>sp|Q13117|DAZ2_HUMAN Deleted in azoospermia protein 2 OS=Homo sapiens GN=DAZ2 PE=1 SV=3
Length = 558
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 40 GRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS 99
G LPE K + N +++G I E E+ + F ++G++K ++I N+ TG S
Sbjct: 29 GWVLPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR------TGVS 79
Query: 100 KHFGFIEF-NDPEVAEVVADAMH 121
K +GF+ F ND +V ++V +H
Sbjct: 80 KGYGFVSFVNDVDVQKIVGSQIH 102
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 31 DFLPLEGGPGRKL-PEEKPLVNKAA--VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIAR 87
++ P+EG P R + + P ++ ++I + K +H FS FG I +++A
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVAT 188
Query: 88 NKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125
+ + G+SK FGF+ + E A+ ++++G LL
Sbjct: 189 D------DLGQSKCFGFVHYETEEAAQAAIESVNGMLL 220
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVA 113
+Y+ I + EKE F+ FG I + + ++ + GKSK FGF+ F + E A
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE------GKSKGFGFVNFEEHEAA 301
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115
L++ + +++ F FGTI + K+ V + GKSK FGF+ F+ PE A
Sbjct: 353 LFVKNLDEQIDSEKLEEEFKPFGTIT------SSKVMVDDAGKSKGFGFVCFSTPEEATK 406
Query: 116 VADAMHGYLLFEHILQVHL 134
M+ ++ L V L
Sbjct: 407 AITEMNQRMVNGKPLYVAL 425
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFN 108
L ++ ++IG + E + +F ++GT+ L+I ++ TG+S+ FGF+ F
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-----TGRSRGFGFLSFE 208
Query: 109 DP-EVAEVVADAMHGYLLFEHILQVHLIPP 137
P V EVV +HIL +I P
Sbjct: 209 KPSSVDEVVK--------TQHILDGKVIDP 230
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 39 PGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGK 98
P R +P ++ +K +++G I KE FFSQ+GTI ++ +K +TG+
Sbjct: 230 PKRAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK-----DTGQ 282
Query: 99 SKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVHLIPPEHVHLK 143
S+ FGF+ ++ + + V + ++ F + +++ P H+ K
Sbjct: 283 SRGFGFVTYDSADAVDRV--CQNKFIDFKDRKIEIKRAEPRHMQQK 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,363,522
Number of Sequences: 539616
Number of extensions: 3631970
Number of successful extensions: 11057
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 504
Number of HSP's that attempted gapping in prelim test: 10352
Number of HSP's gapped (non-prelim): 970
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)