Query 047513
Match_columns 221
No_of_seqs 246 out of 2065
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4208 Nucleolar RNA-binding 99.8 3.3E-20 7.2E-25 146.0 11.3 172 45-221 41-214 (214)
2 PLN03134 glycine-rich RNA-bind 99.8 1.7E-18 3.8E-23 132.9 13.8 91 50-145 31-121 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 1.5E-18 3.3E-23 150.8 4.9 148 49-214 103-257 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.4E-17 1.2E-21 141.4 12.1 82 53-139 269-350 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 1.2E-16 2.6E-21 106.8 10.0 70 56-131 1-70 (70)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-16 4.2E-21 137.9 11.6 83 52-139 2-84 (352)
7 TIGR01645 half-pint poly-U bin 99.7 1.6E-17 3.5E-22 152.3 4.2 154 52-212 106-266 (612)
8 KOG0121 Nuclear cap-binding pr 99.7 1.4E-16 3E-21 116.8 7.2 84 51-139 34-117 (153)
9 TIGR01659 sex-lethal sex-letha 99.7 3.9E-16 8.5E-21 135.8 10.8 110 25-139 164-276 (346)
10 KOG0125 Ataxin 2-binding prote 99.7 5.1E-16 1.1E-20 129.8 10.1 102 30-138 72-174 (376)
11 KOG0122 Translation initiation 99.7 6.4E-16 1.4E-20 124.6 10.0 85 49-138 185-269 (270)
12 TIGR01645 half-pint poly-U bin 99.7 5.6E-16 1.2E-20 142.2 11.0 109 26-139 165-285 (612)
13 TIGR01648 hnRNP-R-Q heterogene 99.6 7.5E-16 1.6E-20 141.0 6.8 100 29-136 36-136 (578)
14 KOG0149 Predicted RNA-binding 99.6 1.2E-15 2.7E-20 122.5 7.1 79 52-136 11-89 (247)
15 TIGR01628 PABP-1234 polyadenyl 99.6 8.3E-16 1.8E-20 142.1 5.7 139 55-209 2-146 (562)
16 PF14259 RRM_6: RNA recognitio 99.6 1.3E-14 2.8E-19 97.4 10.0 70 56-131 1-70 (70)
17 KOG0148 Apoptosis-promoting RN 99.6 4.3E-15 9.3E-20 121.5 8.8 106 23-139 117-239 (321)
18 KOG0126 Predicted RNA-binding 99.6 2.4E-16 5.2E-21 122.0 0.6 80 52-136 34-113 (219)
19 PLN03120 nucleic acid binding 99.6 1.2E-14 2.7E-19 120.0 10.5 78 52-138 3-80 (260)
20 PLN03213 repressor of silencin 99.6 1.5E-14 3.2E-19 126.8 10.0 78 52-138 9-88 (759)
21 TIGR01622 SF-CC1 splicing fact 99.6 2.2E-15 4.8E-20 135.8 5.1 152 51-209 87-245 (457)
22 KOG0113 U1 small nuclear ribon 99.6 2E-14 4.3E-19 119.0 10.1 85 51-140 99-183 (335)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.7E-14 8.1E-19 129.4 13.0 82 52-138 294-375 (509)
24 KOG0107 Alternative splicing f 99.6 1.2E-14 2.6E-19 112.0 8.0 78 52-139 9-86 (195)
25 TIGR01622 SF-CC1 splicing fact 99.6 3.3E-14 7.3E-19 128.2 12.3 103 29-136 149-264 (457)
26 KOG4207 Predicted splicing fac 99.6 8.1E-15 1.8E-19 115.7 6.8 80 52-136 12-91 (256)
27 KOG0111 Cyclophilin-type pepti 99.5 3.7E-15 8E-20 118.7 4.6 86 52-142 9-94 (298)
28 KOG0144 RNA-binding protein CU 99.5 7.5E-15 1.6E-19 126.7 6.2 108 28-141 95-209 (510)
29 PLN03121 nucleic acid binding 99.5 8.1E-14 1.8E-18 113.5 11.5 77 52-137 4-80 (243)
30 KOG0130 RNA-binding protein RB 99.5 2.7E-14 5.8E-19 105.7 7.3 81 52-137 71-151 (170)
31 TIGR01628 PABP-1234 polyadenyl 99.5 3E-14 6.5E-19 131.8 9.2 84 51-140 283-366 (562)
32 KOG0117 Heterogeneous nuclear 99.5 2.3E-14 5.1E-19 124.1 7.9 132 50-205 80-221 (506)
33 KOG0148 Apoptosis-promoting RN 99.5 4.8E-14 1E-18 115.4 7.4 82 53-139 62-143 (321)
34 KOG0114 Predicted RNA-binding 99.5 1.8E-13 3.8E-18 97.0 9.2 81 52-140 17-97 (124)
35 smart00362 RRM_2 RNA recogniti 99.5 2.6E-13 5.6E-18 89.8 9.6 72 55-133 1-72 (72)
36 KOG4205 RNA-binding protein mu 99.5 1.8E-15 3.8E-20 128.8 -1.5 156 52-216 5-163 (311)
37 KOG0144 RNA-binding protein CU 99.5 1.9E-13 4.2E-18 118.1 10.6 143 43-202 24-175 (510)
38 smart00360 RRM RNA recognition 99.5 2.7E-13 5.8E-18 89.4 8.7 71 58-133 1-71 (71)
39 COG0724 RNA-binding proteins ( 99.5 2.9E-13 6.4E-18 111.6 10.4 80 53-137 115-194 (306)
40 KOG0131 Splicing factor 3b, su 99.5 8.1E-14 1.8E-18 108.1 6.2 82 50-136 6-87 (203)
41 KOG0145 RNA-binding protein EL 99.5 2.5E-13 5.5E-18 110.7 9.0 84 52-140 40-123 (360)
42 KOG0123 Polyadenylate-binding 99.5 1.4E-13 3.1E-18 120.6 8.0 107 23-141 50-156 (369)
43 KOG0131 Splicing factor 3b, su 99.4 1.1E-13 2.4E-18 107.3 4.9 107 29-140 70-179 (203)
44 KOG0108 mRNA cleavage and poly 99.4 3.5E-13 7.6E-18 119.5 8.2 82 54-140 19-100 (435)
45 cd00590 RRM RRM (RNA recogniti 99.4 2.3E-12 5E-17 85.7 10.2 74 55-134 1-74 (74)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.1E-12 4.5E-17 117.5 11.3 77 52-138 274-351 (481)
47 TIGR01648 hnRNP-R-Q heterogene 99.4 1.8E-12 4E-17 118.9 10.5 95 33-140 207-309 (578)
48 KOG0145 RNA-binding protein EL 99.4 4.1E-12 9E-17 103.7 10.9 80 52-136 277-356 (360)
49 KOG0105 Alternative splicing f 99.4 1.1E-12 2.3E-17 102.2 6.5 79 52-138 5-83 (241)
50 KOG0124 Polypyrimidine tract-b 99.4 4.9E-13 1.1E-17 113.6 4.6 149 54-216 114-276 (544)
51 KOG0117 Heterogeneous nuclear 99.4 2.3E-12 4.9E-17 111.9 8.8 97 32-141 232-334 (506)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4E-12 8.7E-17 115.6 10.8 77 52-139 1-79 (481)
53 KOG0127 Nucleolar protein fibr 99.4 6.5E-12 1.4E-16 111.5 11.1 85 51-140 290-380 (678)
54 KOG0127 Nucleolar protein fibr 99.3 3.7E-12 7.9E-17 113.0 9.0 83 52-140 116-198 (678)
55 smart00361 RRM_1 RNA recogniti 99.3 1.8E-11 3.9E-16 82.5 8.6 61 67-132 2-69 (70)
56 KOG0146 RNA-binding protein ET 99.3 3.5E-12 7.7E-17 104.5 5.4 86 51-141 283-368 (371)
57 PF13893 RRM_5: RNA recognitio 99.3 4.1E-11 8.9E-16 77.0 8.6 56 70-135 1-56 (56)
58 KOG0146 RNA-binding protein ET 99.3 1.4E-11 3E-16 101.0 7.1 99 37-141 2-104 (371)
59 KOG0147 Transcriptional coacti 99.2 1.8E-11 3.9E-16 108.8 6.4 79 55-138 280-358 (549)
60 KOG0109 RNA-binding protein LA 99.2 2.6E-11 5.7E-16 100.4 6.3 72 54-138 3-74 (346)
61 KOG4206 Spliceosomal protein s 99.2 6.5E-11 1.4E-15 95.0 8.1 80 52-139 8-91 (221)
62 KOG0124 Polypyrimidine tract-b 99.2 8.5E-11 1.8E-15 100.1 8.1 106 26-136 171-288 (544)
63 KOG0110 RNA-binding protein (R 99.2 6.1E-11 1.3E-15 108.1 7.3 150 52-206 514-669 (725)
64 KOG0109 RNA-binding protein LA 99.2 3.3E-11 7.1E-16 99.8 4.7 101 24-138 50-150 (346)
65 KOG4205 RNA-binding protein mu 99.2 1.2E-10 2.7E-15 99.3 8.4 103 34-142 71-180 (311)
66 KOG0415 Predicted peptidyl pro 99.1 8.6E-11 1.9E-15 99.7 7.0 82 50-136 236-317 (479)
67 KOG4212 RNA-binding protein hn 99.1 2.3E-10 4.9E-15 99.5 8.4 79 52-136 43-122 (608)
68 KOG0132 RNA polymerase II C-te 99.1 3.8E-10 8.1E-15 103.9 7.8 97 53-160 421-519 (894)
69 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.2E-09 2.6E-14 97.8 10.0 81 52-137 404-484 (940)
70 TIGR01642 U2AF_lg U2 snRNP aux 99.0 8.7E-10 1.9E-14 100.8 8.8 86 52-139 408-503 (509)
71 KOG0110 RNA-binding protein (R 99.0 2.1E-10 4.5E-15 104.7 4.1 113 23-140 573-695 (725)
72 KOG0153 Predicted RNA-binding 98.9 4.5E-09 9.7E-14 89.1 8.7 75 52-137 227-302 (377)
73 KOG0123 Polyadenylate-binding 98.9 5E-09 1.1E-13 92.1 8.2 76 54-140 2-77 (369)
74 KOG0533 RRM motif-containing p 98.9 7.1E-09 1.5E-13 85.5 8.4 81 52-138 82-162 (243)
75 KOG4212 RNA-binding protein hn 98.9 4.1E-09 8.8E-14 91.8 6.9 75 51-135 534-608 (608)
76 KOG1548 Transcription elongati 98.9 2.5E-08 5.4E-13 84.6 10.6 81 51-137 132-220 (382)
77 KOG0106 Alternative splicing f 98.8 5.4E-09 1.2E-13 84.5 3.6 72 54-138 2-73 (216)
78 KOG0151 Predicted splicing reg 98.7 7E-08 1.5E-12 88.5 10.1 84 51-136 172-255 (877)
79 KOG1457 RNA binding protein (c 98.7 1.3E-07 2.8E-12 76.1 10.3 85 51-140 32-120 (284)
80 KOG0116 RasGAP SH3 binding pro 98.7 4.2E-08 9.1E-13 86.9 8.1 83 50-138 285-367 (419)
81 KOG4209 Splicing factor RNPS1, 98.7 2.3E-08 4.9E-13 82.4 5.8 83 49-137 97-179 (231)
82 KOG0147 Transcriptional coacti 98.6 2.4E-09 5.3E-14 95.4 -2.6 154 49-208 175-336 (549)
83 KOG0226 RNA-binding proteins [ 98.6 6.7E-08 1.4E-12 79.0 5.7 79 51-134 188-266 (290)
84 KOG4660 Protein Mei2, essentia 98.6 4.2E-08 9.1E-13 87.8 3.5 70 52-131 74-143 (549)
85 KOG4454 RNA binding protein (R 98.5 3.2E-08 6.9E-13 79.3 1.8 77 52-135 8-84 (267)
86 PF04059 RRM_2: RNA recognitio 98.5 1E-06 2.2E-11 62.9 9.3 79 54-137 2-86 (97)
87 KOG0120 Splicing factor U2AF, 98.4 3.2E-07 7E-12 82.5 5.1 91 52-147 288-378 (500)
88 KOG4211 Splicing factor hnRNP- 98.4 1.5E-06 3.3E-11 76.9 9.1 79 52-137 102-181 (510)
89 KOG1190 Polypyrimidine tract-b 98.4 3E-06 6.4E-11 73.7 9.8 78 53-140 297-375 (492)
90 KOG4211 Splicing factor hnRNP- 98.3 2.2E-06 4.8E-11 75.9 8.7 80 52-140 9-88 (510)
91 KOG3152 TBP-binding protein, a 98.1 2E-06 4.4E-11 70.5 3.6 78 52-129 73-157 (278)
92 KOG1995 Conserved Zn-finger pr 98.0 4.4E-06 9.5E-11 71.5 3.8 84 51-139 64-155 (351)
93 KOG4210 Nuclear localization s 98.0 8.3E-06 1.8E-10 69.4 5.3 86 50-141 181-267 (285)
94 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4.1E-10 57.3 5.8 60 53-123 1-60 (105)
95 PF11608 Limkain-b1: Limkain b 97.9 6E-05 1.3E-09 51.9 6.9 68 54-136 3-75 (90)
96 COG5175 MOT2 Transcriptional r 97.8 4.3E-05 9.3E-10 65.2 6.6 79 54-136 115-201 (480)
97 KOG1190 Polypyrimidine tract-b 97.8 3E-05 6.5E-10 67.6 5.6 76 52-137 413-490 (492)
98 KOG4206 Spliceosomal protein s 97.8 0.00011 2.3E-09 59.5 8.1 76 51-136 144-220 (221)
99 KOG1457 RNA binding protein (c 97.7 3.3E-05 7.2E-10 62.4 4.0 65 53-126 210-274 (284)
100 KOG0120 Splicing factor U2AF, 97.7 0.00011 2.4E-09 66.5 7.2 72 69-142 425-496 (500)
101 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00015 3.4E-09 45.8 5.4 52 54-117 2-53 (53)
102 KOG0106 Alternative splicing f 97.6 3.8E-05 8.3E-10 62.3 3.2 76 50-138 96-171 (216)
103 KOG4307 RNA binding protein RB 97.6 0.00023 5E-09 65.9 8.3 77 52-134 866-943 (944)
104 KOG2314 Translation initiation 97.6 0.00018 3.8E-09 65.1 7.3 80 51-136 56-142 (698)
105 KOG4849 mRNA cleavage factor I 97.6 5.7E-05 1.2E-09 64.7 3.4 76 54-134 81-158 (498)
106 KOG1456 Heterogeneous nuclear 97.5 0.00091 2E-08 58.0 10.2 79 50-138 284-363 (494)
107 KOG1365 RNA-binding protein Fu 97.5 0.00011 2.3E-09 63.7 4.5 83 53-141 280-365 (508)
108 PF08952 DUF1866: Domain of un 97.5 0.00083 1.8E-08 51.2 8.5 73 52-138 26-107 (146)
109 KOG0129 Predicted RNA-binding 97.4 0.00042 9E-09 62.2 6.9 66 49-119 366-432 (520)
110 KOG1855 Predicted RNA-binding 97.3 0.00032 7E-09 61.6 4.6 80 45-124 223-310 (484)
111 KOG0112 Large RNA-binding prot 97.3 0.00058 1.2E-08 64.9 6.5 95 32-138 435-531 (975)
112 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0024 5.3E-08 45.8 7.9 83 52-136 5-90 (100)
113 KOG0129 Predicted RNA-binding 97.2 0.0023 5E-08 57.6 8.7 125 50-180 256-393 (520)
114 KOG1548 Transcription elongati 97.1 0.0024 5.3E-08 54.8 7.8 78 52-138 264-352 (382)
115 KOG0105 Alternative splicing f 97.0 0.0028 6.2E-08 50.0 6.9 63 52-126 114-176 (241)
116 KOG4676 Splicing factor, argin 97.0 0.0017 3.6E-08 56.6 5.8 81 52-135 6-86 (479)
117 KOG2202 U2 snRNP splicing fact 96.9 0.00055 1.2E-08 56.4 1.9 66 68-139 83-149 (260)
118 KOG1365 RNA-binding protein Fu 96.8 0.0017 3.7E-08 56.5 4.8 76 53-135 161-240 (508)
119 KOG0128 RNA-binding protein SA 96.8 0.00056 1.2E-08 64.6 1.9 83 53-141 736-818 (881)
120 KOG0115 RNA-binding protein p5 96.6 0.0018 3.9E-08 53.5 3.1 84 26-121 10-93 (275)
121 KOG2416 Acinus (induces apopto 96.6 0.0027 5.9E-08 58.0 4.2 74 52-136 443-520 (718)
122 KOG2193 IGF-II mRNA-binding pr 96.5 0.0021 4.6E-08 56.6 3.3 76 55-141 3-79 (584)
123 PF07576 BRAP2: BRCA1-associat 96.5 0.05 1.1E-06 39.7 9.8 69 52-127 12-81 (110)
124 KOG0128 RNA-binding protein SA 96.4 0.00034 7.4E-09 66.0 -2.2 70 52-126 666-735 (881)
125 KOG1456 Heterogeneous nuclear 96.4 0.021 4.6E-07 49.7 8.7 79 52-140 119-201 (494)
126 PF08675 RNA_bind: RNA binding 96.0 0.053 1.1E-06 37.4 7.0 56 52-121 8-63 (87)
127 KOG2068 MOT2 transcription fac 95.9 0.0036 7.8E-08 53.6 1.2 83 54-138 78-163 (327)
128 KOG0112 Large RNA-binding prot 95.7 0.0035 7.7E-08 59.7 0.8 82 50-137 369-450 (975)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.019 4.2E-07 45.5 4.8 83 52-137 6-97 (176)
130 PF10309 DUF2414: Protein of u 95.7 0.09 2E-06 34.2 6.9 56 52-120 4-62 (62)
131 KOG1996 mRNA splicing factor [ 95.6 0.051 1.1E-06 46.0 7.2 66 68-137 301-366 (378)
132 KOG4307 RNA binding protein RB 95.4 0.013 2.8E-07 54.8 3.0 80 51-136 432-512 (944)
133 KOG2135 Proteins containing th 95.2 0.015 3.3E-07 51.9 2.8 77 53-141 372-449 (526)
134 PF15023 DUF4523: Protein of u 94.7 0.14 3E-06 39.0 6.4 71 52-135 85-159 (166)
135 PF04847 Calcipressin: Calcipr 94.6 0.15 3.3E-06 40.6 6.8 63 66-139 8-72 (184)
136 KOG4285 Mitotic phosphoprotein 93.6 0.39 8.4E-06 40.9 7.6 75 53-140 197-272 (350)
137 KOG0804 Cytoplasmic Zn-finger 93.6 0.32 7E-06 43.5 7.5 68 53-127 74-142 (493)
138 PF03880 DbpA: DbpA RNA bindin 93.5 0.6 1.3E-05 31.3 7.2 67 55-135 2-74 (74)
139 KOG4210 Nuclear localization s 92.3 0.2 4.3E-06 42.8 4.2 82 51-137 86-167 (285)
140 KOG2253 U1 snRNP complex, subu 91.7 0.12 2.5E-06 48.2 2.3 72 49-134 36-107 (668)
141 KOG4574 RNA-binding protein (c 91.5 0.13 2.8E-06 49.3 2.5 72 57-139 302-375 (1007)
142 KOG2591 c-Mpl binding protein, 90.4 0.55 1.2E-05 43.2 5.2 72 51-134 173-248 (684)
143 KOG4660 Protein Mei2, essentia 89.0 0.74 1.6E-05 42.2 4.9 77 55-136 390-471 (549)
144 PF11767 SET_assoc: Histone ly 87.5 3.3 7.2E-05 27.3 6.1 55 64-132 11-65 (66)
145 KOG2318 Uncharacterized conser 85.9 4.9 0.00011 37.3 8.3 84 52-135 173-305 (650)
146 KOG4454 RNA binding protein (R 81.7 0.3 6.5E-06 39.8 -1.0 80 26-123 65-148 (267)
147 KOG4483 Uncharacterized conser 78.1 4.6 9.9E-05 35.9 5.0 56 51-118 389-445 (528)
148 KOG4676 Splicing factor, argin 77.5 0.29 6.3E-06 43.1 -2.4 78 53-140 151-228 (479)
149 KOG2891 Surface glycoprotein [ 73.9 3.6 7.8E-05 34.9 3.1 74 52-125 148-247 (445)
150 KOG2193 IGF-II mRNA-binding pr 73.5 0.1 2.3E-06 46.2 -6.2 77 51-136 78-155 (584)
151 PF15513 DUF4651: Domain of un 67.1 15 0.00033 23.8 4.3 18 68-85 9-26 (62)
152 PF03468 XS: XS domain; Inter 65.7 16 0.00034 26.8 4.8 56 54-117 9-74 (116)
153 KOG4410 5-formyltetrahydrofola 59.0 26 0.00057 29.9 5.4 47 54-110 331-377 (396)
154 smart00596 PRE_C2HC PRE_C2HC d 55.0 21 0.00045 23.7 3.4 60 68-135 2-62 (69)
155 COG0724 RNA-binding proteins ( 52.8 17 0.00036 29.1 3.4 40 51-90 223-262 (306)
156 PF07530 PRE_C2HC: Associated 51.5 39 0.00084 22.2 4.3 61 68-136 2-63 (68)
157 KOG2295 C2H2 Zn-finger protein 47.1 3 6.5E-05 38.5 -2.0 73 52-129 230-302 (648)
158 PF09707 Cas_Cas2CT1978: CRISP 42.9 57 0.0012 22.6 4.2 49 52-108 24-72 (86)
159 PF10567 Nab6_mRNP_bdg: RNA-re 40.7 60 0.0013 27.9 4.8 85 52-136 14-106 (309)
160 KOG1295 Nonsense-mediated deca 35.4 54 0.0012 29.1 3.9 72 52-126 6-78 (376)
161 KOG4008 rRNA processing protei 31.8 44 0.00095 27.8 2.6 33 51-83 38-70 (261)
162 KOG4019 Calcineurin-mediated s 31.8 74 0.0016 25.4 3.8 77 52-139 9-91 (193)
163 COG5638 Uncharacterized conser 29.2 2.1E+02 0.0045 26.0 6.4 84 52-135 145-295 (622)
164 PF07292 NID: Nmi/IFP 35 domai 28.2 1E+02 0.0023 21.4 3.7 33 103-135 1-34 (88)
165 COG0030 KsgA Dimethyladenosine 27.0 80 0.0017 26.6 3.5 36 53-88 95-130 (259)
166 PRK11558 putative ssRNA endonu 26.1 1.1E+02 0.0025 21.7 3.6 51 52-110 26-76 (97)
167 PF02714 DUF221: Domain of unk 25.1 97 0.0021 26.4 3.8 33 103-137 1-33 (325)
168 KOG4365 Uncharacterized conser 22.8 12 0.00026 33.8 -2.2 76 54-135 4-79 (572)
169 KOG0156 Cytochrome P450 CYP2 s 22.8 1.4E+02 0.0031 27.5 4.6 62 54-130 33-97 (489)
170 PRK11230 glycolate oxidase sub 22.7 3.7E+02 0.0081 24.8 7.3 63 53-121 189-255 (499)
171 COG5193 LHP1 La protein, small 22.6 40 0.00086 30.2 0.9 61 52-117 173-243 (438)
172 PF00398 RrnaAD: Ribosomal RNA 22.1 1E+02 0.0022 25.7 3.2 29 52-80 96-126 (262)
173 PF11411 DNA_ligase_IV: DNA li 20.7 80 0.0017 18.1 1.6 17 63-79 19-35 (36)
No 1
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.83 E-value=3.3e-20 Score=146.00 Aligned_cols=172 Identities=40% Similarity=0.631 Sum_probs=157.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 047513 45 EEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQF-GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY 123 (221)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~ 123 (221)
++.++....+.+||+.+|..+.+.++..+|.+| |.+..+++.+++. ||.++|||||+|++.+.|..|.+.||++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkr-----TGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKR-----TGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccc-----cCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 444556678899999999999999999999998 7888999999999 9999999999999999999999999999
Q ss_pred eeCCeEEEEEEeCCC-ccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhHHHHHHHHHHHcCccccCC
Q 047513 124 LLFEHILQVHLIPPE-HVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHDQKRRKRIEAASIEYECP 202 (221)
Q Consensus 124 ~l~gr~i~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (221)
.|+++.|.|.+..|. ..+...|..+...+.+.....+.....+...+.++..+.+......+....+....++|++.++
T Consensus 116 Ll~e~lL~c~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~~~~~~~~t~~e~~k~~~k~~~~~~~~~~~~~~~~i~~~~~ 195 (214)
T KOG4208|consen 116 LLMEHLLECHVMPPEQKVEKNLKKVSGTPFKPGKTVPIKRLQDNKDLTHEERRKKLVKENKKDAKDDKAVTEAGIEPEVS 195 (214)
T ss_pred hhhhheeeeEEeCchhhhhhhhhhhcCCcCCCCCcccccccCcccccchHHhhHHHHhhhhhhhcccchhcccCcccccc
Confidence 999999999999999 8899999999999999999989899999999999999888888888888999999999999999
Q ss_pred ccccccCCCCcccccCCCC
Q 047513 203 EIVGYVMPAPKKIKSKSSP 221 (221)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ 221 (221)
+++....+++..+.+..+|
T Consensus 196 e~~~~~~~~~~~kk~~~~~ 214 (214)
T KOG4208|consen 196 EPVTKKVPIKTRKKESPEP 214 (214)
T ss_pred ccccccCCCcccccCCCCC
Confidence 9999999888887766553
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.7e-18 Score=132.93 Aligned_cols=91 Identities=23% Similarity=0.430 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...+++|||+|||+++++++|+++|.+||.|.+|.++.+.. +++++|||||+|.+.++|+.|++.||+..|+|+.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-----TGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-----CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44678999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccccccc
Q 047513 130 LQVHLIPPEHVHLKLW 145 (221)
Q Consensus 130 i~v~~a~~~~~~~~~~ 145 (221)
|+|.++.++......+
T Consensus 106 l~V~~a~~~~~~~~~~ 121 (144)
T PLN03134 106 IRVNPANDRPSAPRAY 121 (144)
T ss_pred EEEEeCCcCCCCCCCC
Confidence 9999998776554444
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.5e-18 Score=150.85 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=112.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
.....++|||+|||+++|+++|+++|..||.|.+|+|+.+.. +++++|||||+|.+.++|..|+..|||..+.++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~-----tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK-----TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 344678999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred EEEEEEeCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHh-------HHHHHHHHHHHcCccccC
Q 047513 129 ILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILK-------HDQKRRKRIEAASIEYEC 201 (221)
Q Consensus 129 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~ 201 (221)
+|+|.++.|....... ..+....+....++++..++++.+.. .++.+.+....+||+|+.
T Consensus 178 ~i~V~~a~p~~~~~~~-------------~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 178 RLKVSYARPGGESIKD-------------TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred eeeeeccccccccccc-------------ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 9999998775332111 12333445555666666666665432 222233445678888887
Q ss_pred CccccccCCCCcc
Q 047513 202 PEIVGYVMPAPKK 214 (221)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (221)
.+.+..++..-+.
T Consensus 245 ~e~A~~Ai~~lng 257 (346)
T TIGR01659 245 REEAQEAISALNN 257 (346)
T ss_pred HHHHHHHHHHhCC
Confidence 7666655544333
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=5.4e-17 Score=141.43 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
+.+|||+|||+.+++++|+++|++||.|.+++++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~-----t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT-----TNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC-----CCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44799999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeCCCc
Q 047513 133 HLIPPEH 139 (221)
Q Consensus 133 ~~a~~~~ 139 (221)
.|+..+.
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9987664
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=1.2e-16 Score=106.81 Aligned_cols=70 Identities=36% Similarity=0.684 Sum_probs=66.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
|||+|||+++++++|+++|++||.|..+.++.+. ++..+|||||+|.+.++|..|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~------~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS------SGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET------TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc------cccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999973 699999999999999999999999999999999986
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.9e-16 Score=137.94 Aligned_cols=83 Identities=24% Similarity=0.507 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.++|||+|||+.+++++|+++|+.||.|.+|+|+.++. +|+++|||||+|.+.++|..|++.|||..|.|+.|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~-----~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV-----TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC-----CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 457999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|.++.|..
T Consensus 77 v~~a~~~~ 84 (352)
T TIGR01661 77 VSYARPSS 84 (352)
T ss_pred EEeecccc
Confidence 99998764
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=1.6e-17 Score=152.30 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=112.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||||||+.+++++|+++|..||.|.+|.++.++. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~-----TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC-----CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 568999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhH-------HHHHHHHHHHcCccccCCcc
Q 047513 132 VHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKH-------DQKRRKRIEAASIEYECPEI 204 (221)
Q Consensus 132 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~ 204 (221)
|................ ........++....+....+.++..+.++.+... +.......+++||+|...+.
T Consensus 181 V~rp~~~p~a~~~~~~~--~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMV--QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ecccccccccccccccc--cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 98643221111000000 0000122345556666677777777777766443 22334566788999987776
Q ss_pred ccccCCCC
Q 047513 205 VGYVMPAP 212 (221)
Q Consensus 205 ~~~~~~~~ 212 (221)
...+....
T Consensus 259 A~kAI~am 266 (612)
T TIGR01645 259 QSEAIASM 266 (612)
T ss_pred HHHHHHHh
Confidence 55544333
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.4e-16 Score=116.75 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..+++||||||+..++|++|.++|+.+|+|..|.+-.++. +-.++|||||+|.+.++|..|+..++|+.++.++|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----CcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 4789999999999999999999999999999999999998 88999999999999999999999999999999999
Q ss_pred EEEEeCCCc
Q 047513 131 QVHLIPPEH 139 (221)
Q Consensus 131 ~v~~a~~~~ 139 (221)
++.|...-.
T Consensus 109 r~D~D~GF~ 117 (153)
T KOG0121|consen 109 RIDWDAGFV 117 (153)
T ss_pred eeeccccch
Confidence 999975443
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=3.9e-16 Score=135.80 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=94.7
Q ss_pred CccccCCccccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEE
Q 047513 25 DRKDAADFLPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFG 103 (221)
Q Consensus 25 ~~~~~~~~~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~a 103 (221)
.+...+|+..+.++++++.+... ......++|||+|||+.+++++|+++|++||.|..|.++.++. +|+++|||
T Consensus 164 ~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~-----tg~~kG~a 238 (346)
T TIGR01659 164 RAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL-----TGTPRGVA 238 (346)
T ss_pred HHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC-----CCccceEE
Confidence 34456899999999888765432 2233567899999999999999999999999999999999988 89999999
Q ss_pred EEEECCHHHHHHHHHHhCCceeCC--eEEEEEEeCCCc
Q 047513 104 FIEFNDPEVAEVVADAMHGYLLFE--HILQVHLIPPEH 139 (221)
Q Consensus 104 fV~f~~~~~a~~al~~l~g~~l~g--r~i~v~~a~~~~ 139 (221)
||+|.+.++|+.||+.||+..+.+ ++|+|.++....
T Consensus 239 FV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 239 FVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 999999999999999999998865 789999987653
No 10
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=5.1e-16 Score=129.81 Aligned_cols=102 Identities=23% Similarity=0.424 Sum_probs=86.9
Q ss_pred CCccccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEEC
Q 047513 30 ADFLPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFN 108 (221)
Q Consensus 30 ~~~~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~ 108 (221)
.++.+..|-++...+.+. +..+.+.+|+|+|||+.+.+-||+.+|.+||.|.+|.|+.+. .-++|||||+|+
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-------RGSKGFGFVTme 144 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-------RGSKGFGFVTME 144 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-------CCCCccceEEec
Confidence 344555665655544443 334577899999999999999999999999999999999984 458999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 047513 109 DPEVAEVVADAMHGYLLFEHILQVHLIPPE 138 (221)
Q Consensus 109 ~~~~a~~al~~l~g~~l~gr~i~v~~a~~~ 138 (221)
+.++|++|-++|||..+.||+|+|..|.++
T Consensus 145 n~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 145 NPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999999999999876
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.4e-16 Score=124.61 Aligned_cols=85 Identities=28% Similarity=0.489 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
..++.++|-|.||+.++++.+|+++|..||.|..|.+..++. ||.++|||||.|.+.++|.+||..|||+-++.-
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~-----TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE-----TGLSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccc-----cCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 455788999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q 047513 129 ILQVHLIPPE 138 (221)
Q Consensus 129 ~i~v~~a~~~ 138 (221)
.|+|.|++|.
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999986
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=5.6e-16 Score=142.24 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=93.4
Q ss_pred ccccCCccccCCCCCCCCCCCC------------CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccc
Q 047513 26 RKDAADFLPLEGGPGRKLPEEK------------PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRV 93 (221)
Q Consensus 26 ~~~~~~~~~l~g~~~r~~~~~~------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~ 93 (221)
+...+|+..+.|+++++..... ......++|||+|||+++++++|+++|+.||.|.+|++++++.
T Consensus 165 Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~--- 241 (612)
T TIGR01645 165 ALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT--- 241 (612)
T ss_pred HHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---
Confidence 3346889999999777643211 1112457999999999999999999999999999999999988
Q ss_pred cCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCc
Q 047513 94 LNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 94 ~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~ 139 (221)
+|+++|||||+|.+.++|..|+..|||..|+|+.|+|.++.+..
T Consensus 242 --tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 242 --GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred --CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 89999999999999999999999999999999999999987643
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=7.5e-16 Score=141.04 Aligned_cols=100 Identities=21% Similarity=0.402 Sum_probs=84.3
Q ss_pred cCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEEC
Q 047513 29 AADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFN 108 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~ 108 (221)
.+++..+.|+|.+.. +..+....++|||+|||+++++++|+.+|++||.|.+|+|+.+ . +|.++|||||+|.
T Consensus 36 ~~~g~r~~g~Pp~~~--~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~-----sG~sRGfaFV~F~ 107 (578)
T TIGR01648 36 QENGQRKYGGPPPGW--SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-F-----SGQNRGYAFVTFC 107 (578)
T ss_pred ccCCcccCCCCCCcc--cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-C-----CCCccceEEEEeC
Confidence 455666677766653 2233346799999999999999999999999999999999999 5 7999999999999
Q ss_pred CHHHHHHHHHHhCCceeC-CeEEEEEEeC
Q 047513 109 DPEVAEVVADAMHGYLLF-EHILQVHLIP 136 (221)
Q Consensus 109 ~~~~a~~al~~l~g~~l~-gr~i~v~~a~ 136 (221)
+.++|+.||+.||+..+. |+.|.|..+.
T Consensus 108 ~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 108 GKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CHHHHHHHHHHcCCCeecCCccccccccc
Confidence 999999999999999885 7877776653
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=122.46 Aligned_cols=79 Identities=23% Similarity=0.443 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.-++||||||+|.+..+.|+++|.+||+|.+..|+.|+. +|+++|||||+|.|.++|.+|++. ..-.|+||+-.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~-----t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aN 84 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN-----TGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKAN 84 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC-----CccccceeeEEeecHHHHHHHhcC-CCCcccccccc
Confidence 346899999999999999999999999999999999999 999999999999999999999965 45678999999
Q ss_pred EEEeC
Q 047513 132 VHLIP 136 (221)
Q Consensus 132 v~~a~ 136 (221)
|.+|.
T Consensus 85 cnlA~ 89 (247)
T KOG0149|consen 85 CNLAS 89 (247)
T ss_pred cchhh
Confidence 99874
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=8.3e-16 Score=142.10 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=102.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 134 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~ 134 (221)
+|||||||+++|+++|+++|+.||.|.+|+|+++.. +++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~-----t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV-----TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 799999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred eCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhHHH------HHHHHHHHcCccccCCcccccc
Q 047513 135 IPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHDQ------KRRKRIEAASIEYECPEIVGYV 208 (221)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~ 208 (221)
+..+..... .+ ...+....+....+.++.....+.+..... ...+..+.++|.|+..+....+
T Consensus 77 s~~~~~~~~--~~---------~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 77 SQRDPSLRR--SG---------VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred ccccccccc--cC---------CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHH
Confidence 764432211 01 112333445555666666555554432211 1122345677777766555444
Q ss_pred C
Q 047513 209 M 209 (221)
Q Consensus 209 ~ 209 (221)
.
T Consensus 146 i 146 (562)
T TIGR01628 146 I 146 (562)
T ss_pred H
Confidence 3
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=1.3e-14 Score=97.45 Aligned_cols=70 Identities=30% Similarity=0.616 Sum_probs=64.3
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 56 LYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 56 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
|||+|||+++++++|+.+|+.||.|..+.+..++ .|.++|+|||+|.+.++|..|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~------~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK------DGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST------TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee------ccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999986 488999999999999999999999999999999875
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.3e-15 Score=121.48 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=94.0
Q ss_pred CCCccccCCccccCCCCCCCCCCCCCC-----------------CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEE
Q 047513 23 SSDRKDAADFLPLEGGPGRKLPEEKPL-----------------VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRI 85 (221)
Q Consensus 23 ~~~~~~~~~~~~l~g~~~r~~~~~~~~-----------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 85 (221)
+.++...|||.=|++|.||..|+...+ ...+++|||||++..+++++|++.|+.||.|.+|++
T Consensus 117 AEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv 196 (321)
T KOG0148|consen 117 AENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV 196 (321)
T ss_pred HHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE
Confidence 345566899999999999987765432 467899999999999999999999999999999999
Q ss_pred eecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCc
Q 047513 86 ARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 86 ~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~ 139 (221)
..++ ||+||.|++.|.|..||..+||..++|+.++|.|-+...
T Consensus 197 Fk~q-----------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 197 FKDQ-----------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eccc-----------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 8874 799999999999999999999999999999999976543
No 18
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.4e-16 Score=121.99 Aligned_cols=80 Identities=30% Similarity=0.578 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++.-|||||||+..||.||-.+|++||+|.+|-+++|+. ||+++||||+.|++..+.-.|+..|||..|.||.|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~-----TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK-----TGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC-----CCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 678899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeC
Q 047513 132 VHLIP 136 (221)
Q Consensus 132 v~~a~ 136 (221)
|....
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 99763
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=119.95 Aligned_cols=78 Identities=15% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|..|+ .|||..|.|+.|+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~ 73 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVT 73 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEE
Confidence 357999999999999999999999999999999988743 4699999999999999999 5999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++..-
T Consensus 74 Vt~a~~~ 80 (260)
T PLN03120 74 ITPAEDY 80 (260)
T ss_pred EEeccCC
Confidence 9998643
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.5e-14 Score=126.81 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCH--HHHHHHHHHhCCceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDP--EVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~--~~a~~al~~l~g~~l~gr~ 129 (221)
...+||||||++.+++++|+..|+.||.|.+|.|++. +| +|||||+|... .++.+||..|||..+.|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-------TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-------KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-------cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 5679999999999999999999999999999999944 67 89999999987 6899999999999999999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|+|..|+|.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999999764
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=2.2e-15 Score=135.83 Aligned_cols=152 Identities=15% Similarity=0.219 Sum_probs=106.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||..+++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+ .|+|..|.|++|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~-----~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i 160 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN-----SRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPI 160 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-----CCCcceEEEEEECCHHHHHHHH-HhCCCEECCeee
Confidence 3578999999999999999999999999999999999988 8999999999999999999999 599999999999
Q ss_pred EEEEeCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhH-------HHHHHHHHHHcCccccCCc
Q 047513 131 QVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKH-------DQKRRKRIEAASIEYECPE 203 (221)
Q Consensus 131 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~ 203 (221)
.|.++............... ...+....+....+....++++..++++.+... +.......+.++|+|...+
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~-~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQP-GDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred EEeecchhhhhhhhcccccC-CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 99987543322111000000 000112334445555666777766666654322 1112234456677777655
Q ss_pred cccccC
Q 047513 204 IVGYVM 209 (221)
Q Consensus 204 ~~~~~~ 209 (221)
.+..++
T Consensus 240 ~A~~A~ 245 (457)
T TIGR01622 240 EAKEAL 245 (457)
T ss_pred HHHHHH
Confidence 554443
No 22
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=118.99 Aligned_cols=85 Identities=26% Similarity=0.437 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
++-+||||+.|+++++|..|+..|..||.|..|.|+.+.. ||+++|||||+|.+..++..|.+..+|..|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v-----TgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV-----TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc-----cCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 4668999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
.|.+-.....
T Consensus 174 ~VDvERgRTv 183 (335)
T KOG0113|consen 174 LVDVERGRTV 183 (335)
T ss_pred EEEecccccc
Confidence 9998755444
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=3.7e-14 Score=129.44 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+++++|+++|+.||.|..+.++.+.. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA-----TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 457999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++...
T Consensus 369 v~~a~~~ 375 (509)
T TIGR01642 369 VQRACVG 375 (509)
T ss_pred EEECccC
Confidence 9998654
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=112.03 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
-.+.||||||+..+++.+|...|..||.|..|-|...+ .|||||+|+++.+|..|+..|+|..|.|..|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------CCceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 46899999999999999999999999999999887765 48999999999999999999999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|+++.-..
T Consensus 79 VE~S~G~~ 86 (195)
T KOG0107|consen 79 VELSTGRP 86 (195)
T ss_pred EEeecCCc
Confidence 99986543
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=3.3e-14 Score=128.15 Aligned_cols=103 Identities=29% Similarity=0.470 Sum_probs=87.6
Q ss_pred cCCccccCCCCCCCCCCCC-------------CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccC
Q 047513 29 AADFLPLEGGPGRKLPEEK-------------PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLN 95 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~-------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~ 95 (221)
.+++..+.|+++...+... ......++|||+|||..+++++|+++|+.||.|..|.++.+..
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~----- 223 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE----- 223 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----
Confidence 4677777777665432110 0112358999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 047513 96 TGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136 (221)
Q Consensus 96 tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~ 136 (221)
+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 88999999999999999999999999999999999999975
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=8.1e-15 Score=115.71 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.-..|-|-||.+.++.++|+.+|.+||.|-+|.|++|+. |+.++|||||-|.+..+|+.|+++|+|.+|+|+.|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-----Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-----TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-----cccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 446899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeC
Q 047513 132 VHLIP 136 (221)
Q Consensus 132 v~~a~ 136 (221)
|++|.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99985
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.7e-15 Score=118.66 Aligned_cols=86 Identities=34% Similarity=0.591 Sum_probs=82.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.-++||||+|...+++.-|...|-.||.|.+|.++.|.. +++.+|||||+|...++|..||+.||+..|.||.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye-----sqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE-----SQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchh-----cccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 558999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEeCCCcccc
Q 047513 132 VHLIPPEHVHL 142 (221)
Q Consensus 132 v~~a~~~~~~~ 142 (221)
|.+|.|.+...
T Consensus 84 VN~AkP~kike 94 (298)
T KOG0111|consen 84 VNLAKPEKIKE 94 (298)
T ss_pred EeecCCccccC
Confidence 99999987764
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=7.5e-15 Score=126.69 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=93.1
Q ss_pred ccCCccccCCC--CCCCCCCCCCCCC--CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEE
Q 047513 28 DAADFLPLEGG--PGRKLPEEKPLVN--KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFG 103 (221)
Q Consensus 28 ~~~~~~~l~g~--~~r~~~~~~~~~~--~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~a 103 (221)
.-+|.++|.|. |+...+.+.+.+. ..++||||-|+..++|.+++++|++||.|.+|.|+++.. |.++|||
T Consensus 95 Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------~~sRGca 168 (510)
T KOG0144|consen 95 ALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------GLSRGCA 168 (510)
T ss_pred HhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc------cccccee
Confidence 35778888877 6777766654433 478999999999999999999999999999999999985 9999999
Q ss_pred EEEECCHHHHHHHHHHhCCce-eCC--eEEEEEEeCCCccc
Q 047513 104 FIEFNDPEVAEVVADAMHGYL-LFE--HILQVHLIPPEHVH 141 (221)
Q Consensus 104 fV~f~~~~~a~~al~~l~g~~-l~g--r~i~v~~a~~~~~~ 141 (221)
||.|...+.|..||+.|||.. +.| .+|.|+||++.+.+
T Consensus 169 FV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 169 FVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred EEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999999999999964 554 78999999987654
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=8.1e-14 Score=113.51 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+++.. ..|||||+|.+++.+..|+ .|||..|.+++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------YACTAYVTFKDAYALETAV-LLSGATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------cceEEEEEECCHHHHHHHH-hcCCCeeCCceEE
Confidence 568999999999999999999999999999999998743 4589999999999999999 8999999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.....
T Consensus 75 It~~~~ 80 (243)
T PLN03121 75 ITRWGQ 80 (243)
T ss_pred EEeCcc
Confidence 998653
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.7e-14 Score=105.73 Aligned_cols=81 Identities=20% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.++.|||.+++..+++++|...|..||+|.++.+-.++. ||-.+|||+|+|++...|+.|+..+||..|.|..|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR-----tGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR-----TGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc-----cccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 678999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.|+--
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 999853
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=3e-14 Score=131.78 Aligned_cols=84 Identities=26% Similarity=0.481 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+||++.+++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|||..|+|++|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~------~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l 356 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE------KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPL 356 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC------CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCcee
Confidence 356789999999999999999999999999999999994 69999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
.|.++..+..
T Consensus 357 ~V~~a~~k~~ 366 (562)
T TIGR01628 357 YVALAQRKEQ 366 (562)
T ss_pred EEEeccCcHH
Confidence 9999976543
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.3e-14 Score=124.11 Aligned_cols=132 Identities=22% Similarity=0.388 Sum_probs=100.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-Ce
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-EH 128 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-gr 128 (221)
...++.||||.||.++.|++|.-+|.+.|.|-++++|.++. +|.++|||||+|.+.+.|+.|++.||++.|. |+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~-----sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF-----SGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc-----CCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 35789999999999999999999999999999999999999 9999999999999999999999999999875 89
Q ss_pred EEEEEEeCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHH---------HhHHHHHHHHHHHcCccc
Q 047513 129 ILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKI---------LKHDQKRRKRIEAASIEY 199 (221)
Q Consensus 129 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~ 199 (221)
.|.|..+.... ++|-+.-. +..+.++..+..++. -+.-..+.+.++++||+|
T Consensus 155 ~igvc~Svan~---RLFiG~IP----------------K~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 155 LLGVCVSVANC---RLFIGNIP----------------KTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred EeEEEEeeecc---eeEeccCC----------------ccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 99888764331 23322221 223334433333321 111233567889999999
Q ss_pred cCCccc
Q 047513 200 ECPEIV 205 (221)
Q Consensus 200 ~~~~~~ 205 (221)
....-.
T Consensus 216 e~H~~A 221 (506)
T KOG0117|consen 216 ESHRAA 221 (506)
T ss_pred ecchhH
Confidence 866543
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.8e-14 Score=115.38 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
--.|||+-|...++-++|++.|..||+|.+++|++|.. |++++|||||.|.+.++|++||..|||..|++|.|+-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~-----T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN-----TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc-----CCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 34699999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeCCCc
Q 047513 133 HLIPPEH 139 (221)
Q Consensus 133 ~~a~~~~ 139 (221)
.||..+.
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9997654
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.8e-13 Score=97.00 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..+.|||.|||+.+|.++..++|+.||.|..|++-..+. .+|-|||.|++..+|.+|++.|+|+.+.++.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--------TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--------TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--------cCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 678999999999999999999999999999999977654 479999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|-+..|...
T Consensus 89 vlyyq~~~~ 97 (124)
T KOG0114|consen 89 VLYYQPEDA 97 (124)
T ss_pred EEecCHHHH
Confidence 999776543
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2.6e-13 Score=89.83 Aligned_cols=72 Identities=36% Similarity=0.653 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
+|||+|||..+++++|+++|..||.|..+.+..+ .+.++|+|||+|.+.+.|..|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-------~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-------TGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988876 35678999999999999999999999999999998863
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=1.8e-15 Score=128.81 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=122.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.++||||+|++.++++.|+.+|.+||+|.+|.+++++. +++++||+||+|.+.+...+++ ....+.|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~-----t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS-----TGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC-----CCCcccccceecCCCcchheee-cccccccCCcccc
Confidence 678999999999999999999999999999999999998 8999999999999999988888 4466789999999
Q ss_pred EEEeCCCcccccccccc--CCCCCC-CchHHHHHHhhcccCCHHHHHHHHHHHHhHHHHHHHHHHHcCccccCCcccccc
Q 047513 132 VHLIPPEHVHLKLWRGF--NCQYKP-LDWVEVECKRLNKVRTLEEHKKLMEKILKHDQKRRKRIEAASIEYECPEIVGYV 208 (221)
Q Consensus 132 v~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 208 (221)
+..+.|+.......... ...|.. ++.. ........++++++.+....+..+..+.+.+.+.+|.|+..+.|+.+
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~---~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPD---TTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCC---CchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 99998887654433221 011110 1100 01112223455667777777888888899999999999999999999
Q ss_pred CCCCcccc
Q 047513 209 MPAPKKIK 216 (221)
Q Consensus 209 ~~~~~~~~ 216 (221)
...++|.+
T Consensus 156 ~~~~f~~~ 163 (311)
T KOG4205|consen 156 TLQKFHDF 163 (311)
T ss_pred cccceeee
Confidence 98888865
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.9e-13 Score=118.05 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 43 LPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 43 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
..+.+.+..+.-++|||.||..++|.||+.+|.+||.|.+|-+++|+. |+.++|||||.|.+.++|.+|+.+||+
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~-----t~~s~gcCFv~~~trk~a~~a~~Alhn 98 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS-----TGQSKGCCFVKYYTRKEADEAINALHN 98 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc-----cCcccceEEEEeccHHHHHHHHHHhhc
Confidence 344444555667899999999999999999999999999999999998 999999999999999999999999998
Q ss_pred ce-eC--CeEEEEEEeCCCccccccccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhHHHHH------HHHHH
Q 047513 123 YL-LF--EHILQVHLIPPEHVHLKLWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHDQKR------RKRIE 193 (221)
Q Consensus 123 ~~-l~--gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 193 (221)
.. |- .++|.|++|+.+..+- ..-.+++...+++..++.+...++.++...+... ...++
T Consensus 99 ~ktlpG~~~pvqvk~Ad~E~er~------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 99 QKTLPGMHHPVQVKYADGERERI------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred ccccCCCCcceeecccchhhhcc------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc
Confidence 65 44 4789999987665431 2234567778888889988888888775444321 12233
Q ss_pred HcCccccCC
Q 047513 194 AASIEYECP 202 (221)
Q Consensus 194 ~~~i~~~~~ 202 (221)
=+|+.|.+-
T Consensus 167 caFV~fstk 175 (510)
T KOG0144|consen 167 CAFVKFSTK 175 (510)
T ss_pred eeEEEEehH
Confidence 356666544
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.7e-13 Score=89.39 Aligned_cols=71 Identities=39% Similarity=0.651 Sum_probs=66.5
Q ss_pred EcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 58 IGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
|+|||..+++++|+.+|.+||.|..+.+..++. ++.++|+|||+|.+.++|..|+..+++..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-----~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-----TGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-----CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999998876 78999999999999999999999999999999998873
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=111.62 Aligned_cols=80 Identities=33% Similarity=0.643 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
.++|||+|||..+++++|+.+|..||.|..+.+..++. +|.++|||||+|.+.++|..|+..++|..|.|+.|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~-----~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE-----TGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc-----cCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEe
Confidence 59999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEeCC
Q 047513 133 HLIPP 137 (221)
Q Consensus 133 ~~a~~ 137 (221)
.++.+
T Consensus 190 ~~~~~ 194 (306)
T COG0724 190 QKAQP 194 (306)
T ss_pred ecccc
Confidence 99654
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=8.1e-14 Score=108.05 Aligned_cols=82 Identities=26% Similarity=0.437 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.+...|||||||+..++++.|+++|-+.|+|.++.++.++. +...+||||++|.++++|+-|+..||...|.|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv-----~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV-----TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh-----cccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 34678999999999999999999999999999999999998 8899999999999999999999999999999999
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|..+.
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 9999987
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.5e-13 Score=110.71 Aligned_cols=84 Identities=23% Similarity=0.473 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.-+.|.|.-||.++|+++|+.+|+..|+|.+|++++|+- +|.+-|||||.|.++.+|++|+..|||..+..+.|+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-----tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-----TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-----cccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 446799999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.+|.|...
T Consensus 115 VSyARPSs~ 123 (360)
T KOG0145|consen 115 VSYARPSSD 123 (360)
T ss_pred EEeccCChh
Confidence 999998754
No 42
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.4e-13 Score=120.57 Aligned_cols=107 Identities=24% Similarity=0.424 Sum_probs=96.5
Q ss_pred CCCccccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeE
Q 047513 23 SSDRKDAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHF 102 (221)
Q Consensus 23 ~~~~~~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~ 102 (221)
+..+.+.+|+..+.|+++|.+|....+. .|||.||+++++..+|.++|+.||.|.+|++..+.. | ++||
T Consensus 50 a~~A~~~~n~~~~~~~~~rim~s~rd~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~------g-~kg~ 118 (369)
T KOG0123|consen 50 AERALDTMNFDVLKGKPIRIMWSQRDPS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN------G-SKGY 118 (369)
T ss_pred HHHHHHHcCCcccCCcEEEeehhccCCc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC------C-ceee
Confidence 3456678999999999999999887654 399999999999999999999999999999999974 6 9999
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCccc
Q 047513 103 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 103 afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~ 141 (221)
||+|.++++|.+|++.+||..+.|+.|.|....++..+
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 99999999999999999999999999999988766543
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=1.1e-13 Score=107.27 Aligned_cols=107 Identities=25% Similarity=0.395 Sum_probs=93.3
Q ss_pred cCCccccCCCCCCCCCCCC--CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeecCcccccCCCCceeEEEE
Q 047513 29 AADFLPLEGGPGRKLPEEK--PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR-LRIARNKKLRVLNTGKSKHFGFI 105 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~~tg~~~g~afV 105 (221)
-+|+..|.|+|++...... ...+.+..+||+||.+.+++..|...|+.||.+.. -.+++++. ||.++|||||
T Consensus 70 iln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~-----tg~~~~~g~i 144 (203)
T KOG0131|consen 70 ILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD-----TGNPKGFGFI 144 (203)
T ss_pred HHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCccccccc-----CCCCCCCeEE
Confidence 3678899999999765542 23446689999999999999999999999998865 37888888 8999999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 106 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 106 ~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
.|.+.+.+.+|+..+||..+..++|.|.++..+..
T Consensus 145 ~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 145 NYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred echhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999999999999876544
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=3.5e-13 Score=119.50 Aligned_cols=82 Identities=28% Similarity=0.467 Sum_probs=78.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
+.|||||+|+++++++|..+|+..|.|.+++++.|+. ||+++||||++|.+.++|..|++.|||..+.|++|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~-----tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE-----TGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc-----CCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeCCCcc
Q 047513 134 LIPPEHV 140 (221)
Q Consensus 134 ~a~~~~~ 140 (221)
++.-...
T Consensus 94 ~~~~~~~ 100 (435)
T KOG0108|consen 94 YASNRKN 100 (435)
T ss_pred cccccch
Confidence 9865544
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=2.3e-12 Score=85.66 Aligned_cols=74 Identities=36% Similarity=0.641 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 134 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~ 134 (221)
+|+|+|||+.+++++|+.+|..||.|..+.+..++. +.+.|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~------~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD------TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC------CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998874 47789999999999999999999999999999998864
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.40 E-value=2.1e-12 Score=117.46 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+++|||+|||+ .+++++|+.+|+.||.|..|+++.++ +|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 567999999998 69999999999999999999998863 4899999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
+|.++...
T Consensus 344 ~v~~s~~~ 351 (481)
T TIGR01649 344 RVCPSKQQ 351 (481)
T ss_pred EEEEcccc
Confidence 99998654
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=1.8e-12 Score=118.90 Aligned_cols=95 Identities=25% Similarity=0.357 Sum_probs=77.9
Q ss_pred cccCCCCCCCCCCCCC------CCCCCcEEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEeecCcccccCCCCceeEEE
Q 047513 33 LPLEGGPGRKLPEEKP------LVNKAAVLYIGRIRHGFYEKEMHAFFSQF--GTIKRLRIARNKKLRVLNTGKSKHFGF 104 (221)
Q Consensus 33 ~~l~g~~~r~~~~~~~------~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~~tg~~~g~af 104 (221)
..++|+.+.+.+.... ......+|||+||++++++++|+++|+.| |.|..|.+++ +|||
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------------gfAF 273 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------------DYAF 273 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------------CeEE
Confidence 3456766655433221 12245789999999999999999999999 9999886643 5999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 105 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 105 V~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
|+|.+.++|.+|++.|||..|+|+.|+|.++.|...
T Consensus 274 VeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 274 VHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999999999999999988644
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4.1e-12 Score=103.70 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.++.|||-||.++++|.-|.++|+.||.|..|++++|.. |.+.+|||||.+.+-++|..||..|||+.++++.|.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~t-----tnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFT-----TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCC-----cccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 568899999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeC
Q 047513 132 VHLIP 136 (221)
Q Consensus 132 v~~a~ 136 (221)
|.+-.
T Consensus 352 VsFKt 356 (360)
T KOG0145|consen 352 VSFKT 356 (360)
T ss_pred EEEec
Confidence 99854
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=102.19 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||||||.++.+.+|.++|.+||.|..|.+...+ .+.+||||+|+++.+|+.||..-+|+.++|..|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR 76 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR 76 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------CCCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence 56899999999999999999999999999999886543 3568999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|+++...
T Consensus 77 VEfprgg 83 (241)
T KOG0105|consen 77 VEFPRGG 83 (241)
T ss_pred EEeccCC
Confidence 9998654
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.9e-13 Score=113.60 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=109.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
|+||||.|.+...|+.|+..|..||+|.+|.+.+|+. |++.+|||||+|+-++.|+.|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----cccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 7899999999999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred EeCCCccccc-------cccccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhHHHH-------HHHHHHHcCccc
Q 047513 134 LIPPEHVHLK-------LWRGFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHDQK-------RRKRIEAASIEY 199 (221)
Q Consensus 134 ~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~ 199 (221)
.-..-...+. ..+.+++ +.........++++.+.+++.+.+...+ .+.+.+..||+|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnR---------iYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNR---------IYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 259 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhhe---------EEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEe
Confidence 4211111000 0011111 1111223345666666666666554433 345667889999
Q ss_pred cCCccccccCCCCcccc
Q 047513 200 ECPEIVGYVMPAPKKIK 216 (221)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ 216 (221)
+.-...+++.+-.+.++
T Consensus 260 ~n~qs~~eAiasMNlFD 276 (544)
T KOG0124|consen 260 NNLQSQSEAIASMNLFD 276 (544)
T ss_pred ccccchHHHhhhcchhh
Confidence 97777766666555443
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.3e-12 Score=111.90 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=82.7
Q ss_pred ccccCCCCCCCCCCCCCCCC------CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEE
Q 047513 32 FLPLEGGPGRKLPEEKPLVN------KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFI 105 (221)
Q Consensus 32 ~~~l~g~~~r~~~~~~~~~~------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV 105 (221)
-..|+|..+.+.|++..... .-..|||.||+.++|++.|..+|++||.|..|+.++| ||||
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------------YaFV 298 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------------YAFV 298 (506)
T ss_pred ceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------------eeEE
Confidence 35678887877777643221 2247999999999999999999999999999977654 9999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCccc
Q 047513 106 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 106 ~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~ 141 (221)
.|.+.++|.+|++.+||+.|+|..|.|.+|+|....
T Consensus 299 Hf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 299 HFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999999999999999999999999999999997554
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=4e-12 Score=115.63 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHH--hCCceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADA--MHGYLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--l~g~~l~gr~ 129 (221)
++++|||+|||+++++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|..|+.. +++..++|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------KRQALVEFEDEESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeE
Confidence 3679999999999999999999999999999988764 37999999999999999986 4788999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|.|.++....
T Consensus 70 l~v~~s~~~~ 79 (481)
T TIGR01649 70 AFFNYSTSQE 79 (481)
T ss_pred EEEEecCCcc
Confidence 9999997654
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.5e-12 Score=111.49 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh-----CC-ce
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM-----HG-YL 124 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l-----~g-~~ 124 (221)
..+.+|||.|||+++|+++|..+|++||.|.++.++.++. ||++.|.|||.|.+..+|..||... .| +.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~-----T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD-----TGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC-----CCCcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 3568999999999999999999999999999999999999 9999999999999999999999876 24 78
Q ss_pred eCCeEEEEEEeCCCcc
Q 047513 125 LFEHILQVHLIPPEHV 140 (221)
Q Consensus 125 l~gr~i~v~~a~~~~~ 140 (221)
|.||.|.|..|.++..
T Consensus 365 l~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKE 380 (678)
T ss_pred EeccEEeeeeccchHH
Confidence 9999999999977654
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.7e-12 Score=113.05 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+-++|+|.|||+.+.+.+|..+|+.||.|..|.|++.+. |+.+|||||.|....+|..|++.+||..|+||+|-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d------gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VA 189 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD------GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVA 189 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC------CCccceEEEEEeeHHHHHHHHHhccCceecCceeE
Confidence 368999999999999999999999999999999998775 77779999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|+||-++..
T Consensus 190 VDWAV~Kd~ 198 (678)
T KOG0127|consen 190 VDWAVDKDT 198 (678)
T ss_pred Eeeeccccc
Confidence 999977643
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.8e-11 Score=82.46 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=54.5
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeecCcccccCC--CCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 67 EKEMHAFFS----QFGTIKRLR-IARNKKLRVLNT--GKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 67 e~~L~~~F~----~~G~i~~v~-i~~~~~~~~~~t--g~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
+++|+++|+ .||.|..+. +..++. + +.++|||||+|.+.++|..|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~-----~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNV-----GYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCC-----CCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568889998 999999985 666654 5 889999999999999999999999999999999986
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=3.5e-12 Score=104.45 Aligned_cols=86 Identities=28% Similarity=0.524 Sum_probs=81.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.++|.|||-.||.++.+.+|..+|-.||.|.+.++..|+. |..+++||||.|+++.+++.||..|||+.|+-++|
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA-----TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA-----TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc-----cccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 4789999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.+-.|+...
T Consensus 358 KVQLKRPkdan 368 (371)
T KOG0146|consen 358 KVQLKRPKDAN 368 (371)
T ss_pred hhhhcCccccC
Confidence 99998887654
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=4.1e-11 Score=76.99 Aligned_cols=56 Identities=29% Similarity=0.556 Sum_probs=50.3
Q ss_pred HHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 047513 70 MHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 135 (221)
Q Consensus 70 L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a 135 (221)
|+.+|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..++|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886652 489999999999999999999999999999999986
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.4e-11 Score=100.98 Aligned_cols=99 Identities=21% Similarity=0.392 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCCCCC-CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHH
Q 047513 37 GGPGRKLPEEKPLVN-KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEV 115 (221)
Q Consensus 37 g~~~r~~~~~~~~~~-~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~ 115 (221)
++||.+.+.+.+.+. +.++||||-|...-+|+|++.+|..||.|.+|.+.+..+ |.++|||||.|.+..+|+.
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d------g~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD------GNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC------CCCCCceEEEeccchHHHH
Confidence 456666666654433 678999999999999999999999999999999999885 9999999999999999999
Q ss_pred HHHHhCCce-eC--CeEEEEEEeCCCccc
Q 047513 116 VADAMHGYL-LF--EHILQVHLIPPEHVH 141 (221)
Q Consensus 116 al~~l~g~~-l~--gr~i~v~~a~~~~~~ 141 (221)
||..|||.. +- ...|.|++++.++++
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchHHH
Confidence 999999965 33 467999999877664
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.22 E-value=1.8e-11 Score=108.78 Aligned_cols=79 Identities=28% Similarity=0.626 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 134 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~ 134 (221)
.||||||++++++.+|+.+|..||.|..|.++.+.. ||.++||||++|.+.++|..|++.|||..|-|+.|+|..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~-----tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE-----TGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccc-----cccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 399999999999999999999999999999999988 899999999999999999999999999999999999988
Q ss_pred eCCC
Q 047513 135 IPPE 138 (221)
Q Consensus 135 a~~~ 138 (221)
....
T Consensus 355 v~~r 358 (549)
T KOG0147|consen 355 VTER 358 (549)
T ss_pred eeee
Confidence 6543
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.6e-11 Score=100.37 Aligned_cols=72 Identities=28% Similarity=0.549 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
-.|||||||..+++.+|+.+|.+||.|.+|.|+.+ ||||..++...+..||..|||+.|+|..|.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------------YgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------------cceEEeecccccHHHHhhcccceecceEEEEE
Confidence 36999999999999999999999999999999886 89999999999999999999999999999999
Q ss_pred EeCCC
Q 047513 134 LIPPE 138 (221)
Q Consensus 134 ~a~~~ 138 (221)
-++.+
T Consensus 70 aSksK 74 (346)
T KOG0109|consen 70 ASKSK 74 (346)
T ss_pred ecccc
Confidence 98776
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=6.5e-11 Score=94.97 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHH----HHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHA----FFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
++.||||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|-.|+..|+|+.|.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------TPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------CCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 455999999999999988777 999999999987655 57789999999999999999999999999999
Q ss_pred eEEEEEEeCCCc
Q 047513 128 HILQVHLIPPEH 139 (221)
Q Consensus 128 r~i~v~~a~~~~ 139 (221)
+++++.+|..+.
T Consensus 80 K~mriqyA~s~s 91 (221)
T KOG4206|consen 80 KPMRIQYAKSDS 91 (221)
T ss_pred chhheecccCcc
Confidence 999999997553
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=8.5e-11 Score=100.11 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=91.7
Q ss_pred ccccCCccccCCCCCCCCCCCCCC------------CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccc
Q 047513 26 RKDAADFLPLEGGPGRKLPEEKPL------------VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRV 93 (221)
Q Consensus 26 ~~~~~~~~~l~g~~~r~~~~~~~~------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~ 93 (221)
+.++||+..++|+.+++......+ ...-.+|||..++++.+++||+..|..||+|.+|.+.+.+.
T Consensus 171 AlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt--- 247 (544)
T KOG0124|consen 171 ALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT--- 247 (544)
T ss_pred HHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC---
Confidence 457899999999988874322211 12446899999999999999999999999999999999987
Q ss_pred cCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 047513 94 LNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136 (221)
Q Consensus 94 ~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~ 136 (221)
++..+||||++|.+..+...|+..||-+.++|..|+|-.+.
T Consensus 248 --~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 248 --GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred --CCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 77899999999999999999999999999999999998763
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=6.1e-11 Score=108.11 Aligned_cols=150 Identities=19% Similarity=0.296 Sum_probs=99.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||.||++++|.++|...|...|.|..+.|...++.. +--.+.|||||+|.+.++|+.|+..|+|+.|.|+.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~--~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPA--NKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccc--ccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 34459999999999999999999999999999888776410 0123569999999999999999999999999999999
Q ss_pred EEEeCCCcccc-----cccc-ccCCCCCCCchHHHHHHhhcccCCHHHHHHHHHHHHhHHHHHHHHHHHcCccccCCccc
Q 047513 132 VHLIPPEHVHL-----KLWR-GFNCQYKPLDWVEVECKRLNKVRTLEEHKKLMEKILKHDQKRRKRIEAASIEYECPEIV 205 (221)
Q Consensus 132 v~~a~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (221)
|.++.-..... ..+. +..--.+.++.... .+ +....+..++++....+++...+...++++|++|..+.-+
T Consensus 592 lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt--~r-EVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 592 LKISENKPASTVGKKKSKKKKGTKILVRNIPFEAT--KR-EVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred EEeccCccccccccccccccccceeeeeccchHHH--HH-HHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 99987111100 0000 00111112222211 11 1111222345555555666655667788899999876544
Q ss_pred c
Q 047513 206 G 206 (221)
Q Consensus 206 ~ 206 (221)
.
T Consensus 669 ~ 669 (725)
T KOG0110|consen 669 K 669 (725)
T ss_pred H
Confidence 3
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=3.3e-11 Score=99.79 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCccccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEE
Q 047513 24 SDRKDAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFG 103 (221)
Q Consensus 24 ~~~~~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~a 103 (221)
.+....+++-+|.|..|.+...... ....++|+||||.+.++..+|+..|..||.|.+|.|..+ |+
T Consensus 50 edairNLhgYtLhg~nInVeaSksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------------y~ 115 (346)
T KOG0109|consen 50 EDAIRNLHGYTLHGVNINVEASKSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------------YA 115 (346)
T ss_pred HHHHhhcccceecceEEEEEecccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------------ee
Confidence 3455678899999998876544433 347789999999999999999999999999999999775 99
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 047513 104 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 138 (221)
Q Consensus 104 fV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~ 138 (221)
||.|+-.++|..|+..|+|..|.|++++|+++..+
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999999999999999999998644
No 65
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=1.2e-10 Score=99.29 Aligned_cols=103 Identities=21% Similarity=0.402 Sum_probs=89.2
Q ss_pred ccCCC---CCCCCCCCCCCCCC----CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEE
Q 047513 34 PLEGG---PGRKLPEEKPLVNK----AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIE 106 (221)
Q Consensus 34 ~l~g~---~~r~~~~~~~~~~~----~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~ 106 (221)
.|+|+ +.++.++++..... ..+||||+||.++++++++++|.+||.|..+.++.|.. +.+++||+||.
T Consensus 71 ~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~-----~~~~rgFgfv~ 145 (311)
T KOG4205|consen 71 KLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKT-----TSRPRGFGFVT 145 (311)
T ss_pred ccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccc-----ccccccceeeE
Confidence 34555 56778887655433 34899999999999999999999999999999999998 89999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcccc
Q 047513 107 FNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHL 142 (221)
Q Consensus 107 f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~~ 142 (221)
|.+++++..++ ..+-+.|.++.+.|..|.|+....
T Consensus 146 ~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 146 FDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eccccccceec-ccceeeecCceeeEeeccchhhcc
Confidence 99999999988 568889999999999999987654
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.6e-11 Score=99.70 Aligned_cols=82 Identities=26% Similarity=0.455 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.++..+|||-.|.+-+++++|.-+|+.||.|.+|.++++.. ||.+-.||||+|++.++++.|.-.|++..|.++.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k-----tgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK-----TGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc-----ccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 34678999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|.++.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9999974
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=2.3e-10 Score=99.48 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQ-FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..+.+||.|||+++.+.+|+++|.. .|+|.+|.+..|. +|+++|||.|+|.+++.+++|++.||.+.+.||+|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~------~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE------SGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc------CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 4567999999999999999999975 7999999999998 59999999999999999999999999999999999
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
.|+...
T Consensus 117 ~vKEd~ 122 (608)
T KOG4212|consen 117 VVKEDH 122 (608)
T ss_pred EEeccC
Confidence 998754
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=3.8e-10 Score=103.88 Aligned_cols=97 Identities=13% Similarity=0.294 Sum_probs=83.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
++|||||+|+..+++.+|..+|..||.|.+|.++.. +|||||.+....+|.+|+..|+.+.+.++.|+|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 589999999999999999999999999999988665 579999999999999999999999999999999
Q ss_pred EEeCCCccccccccccCC--CCCCCchHHH
Q 047513 133 HLIPPEHVHLKLWRGFNC--QYKPLDWVEV 160 (221)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~--~~~~~~~~~~ 160 (221)
.|+.....+......|+- .+.-++|.++
T Consensus 490 ~Wa~g~G~kse~k~~wD~~lGVt~IP~~kL 519 (894)
T KOG0132|consen 490 AWAVGKGPKSEYKDYWDVELGVTYIPWEKL 519 (894)
T ss_pred eeeccCCcchhhhhhhhcccCeeEeehHhc
Confidence 999887776633344444 4445777755
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=1.2e-09 Score=97.78 Aligned_cols=81 Identities=14% Similarity=0.340 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
-++.|||++|...+...+|..+|++||.|...+++++.. +.-.++|+||++.+..+|.+||.+||.+.|.|+.|.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR-----sPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR-----SPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC-----CCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 457899999999999999999999999999999999877 667899999999999999999999999999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|..++.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 998853
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.03 E-value=8.7e-10 Score=100.76 Aligned_cols=86 Identities=17% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCC----------CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRHG----------FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~~----------~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
+..+|+|.||... ...++|+++|.+||.|..|.|+++.. -..++...|++||+|.+.++|..|+..||
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~--~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNG--DRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCc--CCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 4568999999532 12367999999999999999987521 00145678999999999999999999999
Q ss_pred CceeCCeEEEEEEeCCCc
Q 047513 122 GYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 122 g~~l~gr~i~v~~a~~~~ 139 (221)
|..|+|+.|.|.|.....
T Consensus 486 Gr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CCEECCeEEEEEEeCHHH
Confidence 999999999999987654
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=2.1e-10 Score=104.70 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=91.3
Q ss_pred CCCccccCCccccCCCCCCCCCC----------CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCccc
Q 047513 23 SSDRKDAADFLPLEGGPGRKLPE----------EKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLR 92 (221)
Q Consensus 23 ~~~~~~~~~~~~l~g~~~r~~~~----------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~ 92 (221)
+...-..|+|..|.|..+-..-. ..+.....+.|+|.|||+.++-.+++.+|..||.+.+|+++.-..
T Consensus 573 A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~-- 650 (725)
T KOG0110|consen 573 AQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG-- 650 (725)
T ss_pred HHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc--
Confidence 33444577888888874332111 112233457999999999999999999999999999999988744
Q ss_pred ccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 93 VLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 93 ~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
.+.++|||||+|-++.+|.+|+++|.++-|.||.|.+.|+..+..
T Consensus 651 ---k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 651 ---KGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ---chhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 577899999999999999999999999999999999999976644
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=4.5e-09 Score=89.11 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHH-hCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADA-MHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-l~g~~l~gr~i 130 (221)
...+|||++|-..+++.+|+.+|.+||+|..+.+.... ++|||+|.+.++|+.|.+. +|...++|++|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 55799999999999999999999999999999887753 5999999999999988765 56567899999
Q ss_pred EEEEeCC
Q 047513 131 QVHLIPP 137 (221)
Q Consensus 131 ~v~~a~~ 137 (221)
.|.|..|
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5e-09 Score=92.08 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
..|||| +++|+..|.++|+.+|.|.++++.++ .+ +-|||||.|.++.+|.+||+.||...+.|++|++-
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d-------~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD-------AT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeec-------CC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 368999 99999999999999999999999998 43 99999999999999999999999999999999999
Q ss_pred EeCCCcc
Q 047513 134 LIPPEHV 140 (221)
Q Consensus 134 ~a~~~~~ 140 (221)
|+..+..
T Consensus 71 ~s~rd~~ 77 (369)
T KOG0123|consen 71 WSQRDPS 77 (369)
T ss_pred hhccCCc
Confidence 9865543
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=7.1e-09 Score=85.48 Aligned_cols=81 Identities=19% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+++|+|.|||+.++++||.++|..||.+..+.+..++ .|.+.|.|-|.|...++|.+|++.+||..++|+++.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~------~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR------AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC------CCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 45789999999999999999999999999999999998 599999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
+....+.
T Consensus 156 ~~~i~~~ 162 (243)
T KOG0533|consen 156 IEIISSP 162 (243)
T ss_pred eEEecCc
Confidence 8887543
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.88 E-value=4.1e-09 Score=91.80 Aligned_cols=75 Identities=27% Similarity=0.340 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...|+|||.|||.++|+..|++-|..||.|.+..|+. .|+++| .|.|.++++|++|+..|+|..+.|+.|
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--------~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--------NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--------cCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 3678999999999999999999999999999999865 477777 899999999999999999999999999
Q ss_pred EEEEe
Q 047513 131 QVHLI 135 (221)
Q Consensus 131 ~v~~a 135 (221)
.|.+.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99873
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.85 E-value=2.5e-08 Score=84.60 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIK--------RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
..++.|||+|||.++|-+++.++|+.||.|. .|++-++. .|..+|-|++.|...++...|+..|++
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~------~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN------QGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC------CCCccCceEEEeecccHHHHHHHHhCc
Confidence 3567799999999999999999999999875 36677766 499999999999999999999999999
Q ss_pred ceeCCeEEEEEEeCC
Q 047513 123 YLLFEHILQVHLIPP 137 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~ 137 (221)
..|.|+.|+|..|.-
T Consensus 206 ~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 206 DELRGKKLRVERAKF 220 (382)
T ss_pred ccccCcEEEEehhhh
Confidence 999999999999854
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=5.4e-09 Score=84.49 Aligned_cols=72 Identities=29% Similarity=0.514 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
..+|||+||+.+.+.+|..+|..||.+.++.+.. ||+||+|.+..+|..|+..|||..|.|..+.|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve 68 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVE 68 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------------ccceeccCchhhhhcccchhcCceecceeeeee
Confidence 3699999999999999999999999998887633 689999999999999999999999999889999
Q ss_pred EeCCC
Q 047513 134 LIPPE 138 (221)
Q Consensus 134 ~a~~~ 138 (221)
++...
T Consensus 69 ~~r~~ 73 (216)
T KOG0106|consen 69 HARGK 73 (216)
T ss_pred ccccc
Confidence 88764
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.73 E-value=7e-08 Score=88.48 Aligned_cols=84 Identities=18% Similarity=0.362 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...+.|||+||++.++++.|-..|+.||+|..+++++.+. .....+.+-||||.|-+..+|++|+..|+|..+.+..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRt--EeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRT--EEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccc--hhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3567899999999999999999999999999999998653 01124567899999999999999999999999999999
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
++-|.+
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999983
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=76.06 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEee-cCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC---
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIAR-NKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF--- 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~--- 126 (221)
+.-+||||++||.++...+|+.+|..|-....+.+.. ++. ....+-+||++|.+...|..|+..|||..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~-----~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG-----DQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC-----CccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 3568999999999999999999999986555554433 222 2235689999999999999999999999997
Q ss_pred CeEEEEEEeCCCcc
Q 047513 127 EHILQVHLIPPEHV 140 (221)
Q Consensus 127 gr~i~v~~a~~~~~ 140 (221)
+..|++++|+....
T Consensus 107 ~stLhiElAKSNtK 120 (284)
T KOG1457|consen 107 GSTLHIELAKSNTK 120 (284)
T ss_pred CceeEeeehhcCcc
Confidence 78899999876543
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=4.2e-08 Score=86.93 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.....+|||.|||++++..+|.++|.+||.|....|..-.. .++..+||||+|.+...++.|+.+ +-..++++.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~-----~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~k 358 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP-----GGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRK 358 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc-----CCCcCceEEEEEeecchhhhhhhc-CccccCCee
Confidence 34556799999999999999999999999998887765432 345559999999999999999965 678899999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|.|+.-.+.
T Consensus 359 l~Veek~~~ 367 (419)
T KOG0116|consen 359 LNVEEKRPG 367 (419)
T ss_pred EEEEecccc
Confidence 999987653
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=2.3e-08 Score=82.42 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
...+...+||||+.+.+|.+++..+|..||.|..+.++.+.. +|.++||+||+|.+.+.+..++. |||..|.|+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~-----~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF-----RGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeecccc-----CCCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 344778999999999999999999999999999999999998 88999999999999999999996 999999999
Q ss_pred EEEEEEeCC
Q 047513 129 ILQVHLIPP 137 (221)
Q Consensus 129 ~i~v~~a~~ 137 (221)
.|.|.+..-
T Consensus 171 ~i~vt~~r~ 179 (231)
T KOG4209|consen 171 AIEVTLKRT 179 (231)
T ss_pred cceeeeeee
Confidence 999988643
No 82
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.62 E-value=2.4e-09 Score=95.38 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
++...++||+..|+..+++.+|.+||+.+|.|..|+++.++. +++++|.|||+|.|.++...|| .|.|..+.|-
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~-----s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~ 248 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN-----SRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV 248 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc-----chhhcceeEEEEecccchhhHh-hhcCCcccCc
Confidence 445678999999999999999999999999999999999998 9999999999999999999999 8999999999
Q ss_pred EEEEEEeCCCcccccccccc-CCCCCCCchHHHHHHhhcccCCHHHH-------HHHHHHHHhHHHHHHHHHHHcCcccc
Q 047513 129 ILQVHLIPPEHVHLKLWRGF-NCQYKPLDWVEVECKRLNKVRTLEEH-------KKLMEKILKHDQKRRKRIEAASIEYE 200 (221)
Q Consensus 129 ~i~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (221)
+|-|......+.+...-..+ ...-.-.+..++.+..+....+++.. +++....+..+.++++..++.+|+|-
T Consensus 249 pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred eeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 99999865544331111111 10111122222444445555555554 44444555566667777788888887
Q ss_pred CCcccccc
Q 047513 201 CPEIVGYV 208 (221)
Q Consensus 201 ~~~~~~~~ 208 (221)
..+....+
T Consensus 329 ~~~~ar~a 336 (549)
T KOG0147|consen 329 NKEDARKA 336 (549)
T ss_pred cHHHHHHH
Confidence 65544433
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=6.7e-08 Score=79.01 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
....+||.|-|.-+++++.|-..|.+|-.-....++++.. ||+++||+||.|.+..++.+|+.+|||..++.++|
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR-----TgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR-----TGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccccc-----ccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 3667899999999999999999999998877788999998 99999999999999999999999999999999998
Q ss_pred EEEE
Q 047513 131 QVHL 134 (221)
Q Consensus 131 ~v~~ 134 (221)
.+..
T Consensus 263 klRk 266 (290)
T KOG0226|consen 263 KLRK 266 (290)
T ss_pred Hhhh
Confidence 7654
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=4.2e-08 Score=87.78 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|+|-|||..+++++|+.+|+.||+|..|+.... .+|..||+|.|..+|++|+++||+..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----------~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----------KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----------cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 6689999999999999999999999999999766444 459999999999999999999999999998887
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.2e-08 Score=79.31 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..+||||+|+...++++-|.++|-+-|+|..|.|+.+++ +..+ ||||.|.++.+..-|++.+||..+.++.|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------CCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 458999999999999999999999999999999988875 6666 999999999999999999999999999988
Q ss_pred EEEe
Q 047513 132 VHLI 135 (221)
Q Consensus 132 v~~a 135 (221)
+.+-
T Consensus 81 ~~~r 84 (267)
T KOG4454|consen 81 RTLR 84 (267)
T ss_pred cccc
Confidence 8874
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=1e-06 Score=62.86 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC----C
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQ--FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF----E 127 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~----g 127 (221)
+||.|.|||...|.++|.+++.. .|....+.++.|-. ++.+.|||||.|.+++.+..-.+.++|..+. .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~-----~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~ 76 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK-----NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSK 76 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc-----CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCC
Confidence 68999999999999999998876 36777788888877 8889999999999999999999999998875 4
Q ss_pred eEEEEEEeCC
Q 047513 128 HILQVHLIPP 137 (221)
Q Consensus 128 r~i~v~~a~~ 137 (221)
+.+.|.+|.-
T Consensus 77 Kvc~i~yAri 86 (97)
T PF04059_consen 77 KVCEISYARI 86 (97)
T ss_pred cEEEEehhHh
Confidence 6677777653
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=3.2e-07 Score=82.51 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=83.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
....+||++||...++.++.++...||.+....+..+.. +|.++||||.+|.++.....|+..|||..+++..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~-----~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA-----TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc-----cccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 557899999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCccccccccc
Q 047513 132 VHLIPPEHVHLKLWRG 147 (221)
Q Consensus 132 v~~a~~~~~~~~~~~~ 147 (221)
|..|.+.......|..
T Consensus 363 vq~A~~g~~~~~~~~~ 378 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFN 378 (500)
T ss_pred eehhhccchhccccCC
Confidence 9999887766665544
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.40 E-value=1.5e-06 Score=76.94 Aligned_cols=79 Identities=15% Similarity=0.295 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR-LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...+|-+.+||+.+|++||.+||+..-.|.. |.++.+. .+++.|-|||.|++.+.|+.|+. -|...|+.|-|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~------rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYI 174 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ------RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYI 174 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC------CCCcccceEEEecCHHHHHHHHH-HHHHhhccceE
Confidence 6679999999999999999999998755544 4556665 48899999999999999999995 47788999999
Q ss_pred EEEEeCC
Q 047513 131 QVHLIPP 137 (221)
Q Consensus 131 ~v~~a~~ 137 (221)
.|..+.-
T Consensus 175 EvF~Ss~ 181 (510)
T KOG4211|consen 175 EVFRSSR 181 (510)
T ss_pred EeehhHH
Confidence 9987743
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.37 E-value=3e-06 Score=73.66 Aligned_cols=78 Identities=23% Similarity=0.438 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 53 AAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 53 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.+|-|.||... +|.+.|..+|+.||.|.+|.|..++. -.|+|.|.+...|+.|+.+|+|..+.|++|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lr 366 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLR 366 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----------cceeeeecchhHHHHHHHHhhcceecCceEE
Confidence 678999998665 89999999999999999999998854 5899999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.+++....
T Consensus 367 vt~SKH~~v 375 (492)
T KOG1190|consen 367 VTLSKHTNV 375 (492)
T ss_pred EeeccCccc
Confidence 999875444
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.35 E-value=2.2e-06 Score=75.95 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..-.|-+.+|||++|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.++++.|++ .+...++.|-|.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-------~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIE 79 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-------NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIE 79 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-------CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEE
Confidence 456788899999999999999999995 677666665 79999999999999999999994 588888999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.-+.+...
T Consensus 80 Vf~~~~~e~ 88 (510)
T KOG4211|consen 80 VFTAGGAEA 88 (510)
T ss_pred EEccCCccc
Confidence 998866544
No 91
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.13 E-value=2e-06 Score=70.46 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcc---cccCCCC----ceeEEEEEECCHHHHHHHHHHhCCce
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKL---RVLNTGK----SKHFGFIEFNDPEVAEVVADAMHGYL 124 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---~~~~tg~----~~g~afV~f~~~~~a~~al~~l~g~~ 124 (221)
..++||+++||+.+...-|+++|+.||.|-+|.+...... ++...|. .---|+|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999988776542 0011122 23457799999999999999999999
Q ss_pred eCCeE
Q 047513 125 LFEHI 129 (221)
Q Consensus 125 l~gr~ 129 (221)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.03 E-value=4.4e-06 Score=71.54 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIK--------RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
...-+|||.+||..+++++|.++|.++|.|. .|.+-+++. |+.++|-|.|.|.++..|+.|+.-+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dke-----T~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKE-----TGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccccc-----ccCcCCceeeeecChhhhhhhhhhhcc
Confidence 3567899999999999999999999999874 355666776 899999999999999999999999999
Q ss_pred ceeCCeEEEEEEeCCCc
Q 047513 123 YLLFEHILQVHLIPPEH 139 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~~~ 139 (221)
..|.+..|.|.+|....
T Consensus 139 kdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccCCCchhhhhhhcc
Confidence 99999999998886544
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.02 E-value=8.3e-06 Score=69.40 Aligned_cols=86 Identities=14% Similarity=0.358 Sum_probs=76.7
Q ss_pred CCCCcEEE-EcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 50 VNKAAVLY-IGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 50 ~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
...+.++| |++|+..++.++|+.+|..+|.|..++++.++. +|.+.|||||.|.+...+..++.. +...++++
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~-----s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE-----SGDSKGFAYVDFSAGNSKKLALND-QTRSIGGR 254 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCC-----ccchhhhhhhhhhhchhHHHHhhc-ccCcccCc
Confidence 33555666 999999999999999999999999999999998 999999999999999999999876 78889999
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
++.+....+....
T Consensus 255 ~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 255 PLRLEEDEPRPKS 267 (285)
T ss_pred ccccccCCCCccc
Confidence 9999998887543
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.97 E-value=1.9e-05 Score=57.31 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=39.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY 123 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~ 123 (221)
++.|+|.+++..++-++|+..|+.||.|.+|.+.... ..|||-|.+++.|+.|+..+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----------CEEEEEECCcchHHHHHHHHHhc
Confidence 3678999999999999999999999999999887754 37999999999999998866543
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.91 E-value=6e-05 Score=51.86 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 54 AVLYIGRIRHGFYEKE----MHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
+.|||.|||.+.+... |++++..|| .|..| + .+-|+|-|.+.+.|.+|...|+|-.+.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------------S---GGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------------e---CCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 4699999999887765 566667786 55554 2 26899999999999999999999999999
Q ss_pred EEEEEEeC
Q 047513 129 ILQVHLIP 136 (221)
Q Consensus 129 ~i~v~~a~ 136 (221)
.|.|.+..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999874
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.85 E-value=4.3e-05 Score=65.15 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=60.6
Q ss_pred cEEEEcCCCCCCcHHH----H--HHHHhccCCeeEEEEeecCcccccCCCCceeEE--EEEECCHHHHHHHHHHhCCcee
Q 047513 54 AVLYIGRIRHGFYEKE----M--HAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFG--FIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~a--fV~f~~~~~a~~al~~l~g~~l 125 (221)
.-+||-+||+.+..++ | .++|++||.|..|.+-.... -+++. .+++ ||+|...++|.+||.+.+|..+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~--s~nst--~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTS--SLNST--ASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccc--ccccc--cccceEEEEecchHHHHHHHHHhccccc
Confidence 3589999999876665 3 57999999999886644321 11111 2333 9999999999999999999999
Q ss_pred CCeEEEEEEeC
Q 047513 126 FEHILQVHLIP 136 (221)
Q Consensus 126 ~gr~i~v~~a~ 136 (221)
+||.|++.+..
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999998864
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.84 E-value=3e-05 Score=67.56 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC-eE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTI-KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE-HI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g-r~ 129 (221)
++.+++++|+|.++++++|...|..-|.. ....+. ++.+-+|++.+.+.+.|-.|+-.+|.+.+++ ..
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff----------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----------QKDRKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeec----------CCCcceeecccCChhHhhhhccccccccCCCCce
Confidence 45689999999999999999999998765 333331 3345699999999999999999999998885 58
Q ss_pred EEEEEeCC
Q 047513 130 LQVHLIPP 137 (221)
Q Consensus 130 i~v~~a~~ 137 (221)
|+|.+++.
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99998753
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.82 E-value=0.00011 Score=59.46 Aligned_cols=76 Identities=18% Similarity=0.392 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-gr~ 129 (221)
.+..++|+.|||..++.+.|..+|.+|+.-..++++.... +.|||+|.+...+..|...+.|..+. ...
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----------~iAfve~~~d~~a~~a~~~lq~~~it~~~~ 213 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----------GIAFVEFLSDRQASAAQQALQGFKITKKNT 213 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----------ceeEEecchhhhhHHHhhhhccceeccCce
Confidence 4567899999999999999999999999989998887653 89999999999999999999998877 777
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
+.|.++.
T Consensus 214 m~i~~a~ 220 (221)
T KOG4206|consen 214 MQITFAK 220 (221)
T ss_pred EEecccC
Confidence 7777653
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.74 E-value=3.3e-05 Score=62.41 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
..||||.||.++++|++|+.+|+.|-....++|... .....||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---------~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---------GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---------CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 458999999999999999999999976555554332 13478999999999999999999998764
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=0.00011 Score=66.46 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=58.7
Q ss_pred HHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcccc
Q 047513 69 EMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHL 142 (221)
Q Consensus 69 ~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~~ 142 (221)
+++.-++.||.|..|.++++-.. .+.....|.-||+|.+.+++++|+.+|+|..|.+|.+...|..++..+.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~--~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~ 496 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPD--ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHA 496 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCC--CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhc
Confidence 45666779999999999887210 1134467899999999999999999999999999999999998776654
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.65 E-value=0.00015 Score=45.84 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHH
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVA 117 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al 117 (221)
+.|-|.|.+.+..+. +..+|.+||.|..+.+.... -+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~-----------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST-----------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC-----------cEEEEEECCHHHHHhhC
Confidence 578899999876654 55589999999998876332 48999999999999885
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=3.8e-05 Score=62.32 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....+.+.|.+++..+.+.+|..+|..+|.+....+ ..+++||+|...+++..|+..|+|..+.++.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------------hccccceeehhhhhhhhcchhccchhhcCce
Confidence 456788999999999999999999999999854433 2368999999999999999999999999999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|.+......
T Consensus 163 l~~~~~~~d 171 (216)
T KOG0106|consen 163 ISVEKNSRD 171 (216)
T ss_pred eeecccCcc
Confidence 999554443
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.63 E-value=0.00023 Score=65.88 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTI-KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..++|-+.|+|++++-+||-+||..|-.+ .+|.+-++. .|...|-|.|.|++.++|.+|...|++..|..+.|
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd------~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND------DGVPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecC------CCCcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 44589999999999999999999999755 456666655 59999999999999999999999999999999998
Q ss_pred EEEE
Q 047513 131 QVHL 134 (221)
Q Consensus 131 ~v~~ 134 (221)
.+.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8765
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00018 Score=65.15 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCc------HHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce
Q 047513 51 NKAAVLYIGRIRHGFY------EKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL 124 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~ 124 (221)
.-...|+|.|+|---. ...|..+|+++|.+..+.++.+.. |..+||.|++|.+..+|+.|+..|||+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~------ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE------GGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc------CCeeeEEEEEecChhhHHHHHHhcccce
Confidence 3557899999987422 234678899999999999998886 5599999999999999999999999999
Q ss_pred eC-CeEEEEEEeC
Q 047513 125 LF-EHILQVHLIP 136 (221)
Q Consensus 125 l~-gr~i~v~~a~ 136 (221)
|. .+.+.|...+
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 87 6777777653
No 105
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=5.7e-05 Score=64.66 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=66.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFG--TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
-.+|||||-|.+|++||.+.+...| .+.++++..++. .|.++|||+|...+..+.+..++.|....|.|..-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~-----NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRT-----NGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhccc-----CCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 4699999999999999999998877 567788888887 899999999999999999999999999999887655
Q ss_pred EEE
Q 047513 132 VHL 134 (221)
Q Consensus 132 v~~ 134 (221)
|--
T Consensus 156 V~~ 158 (498)
T KOG4849|consen 156 VLS 158 (498)
T ss_pred eec
Confidence 443
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.55 E-value=0.00091 Score=57.97 Aligned_cols=79 Identities=18% Similarity=0.345 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 50 VNKAAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
..+++.+.|.+|... +.-+.|..+|-.||.|..|++++.+. |-|.|++.+....++|+..||+..+.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----------gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----------GTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----------ceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 446789999999887 45567899999999999999999764 7899999999999999999999999999
Q ss_pred EEEEEEeCCC
Q 047513 129 ILQVHLIPPE 138 (221)
Q Consensus 129 ~i~v~~a~~~ 138 (221)
.|.|.+++..
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999988643
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.54 E-value=0.00011 Score=63.75 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCC-eeE--EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGT-IKR--LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...|.+.+||+..+-++|-.||..|.. |.. |.+..+. .|++.|-|||+|.+.+.|..|+...|.....+|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~------qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG------QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC------CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 457889999999999999999999863 433 6777775 5999999999999999999999888888888999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|.|..+.-+...
T Consensus 354 iEvfp~S~eeln 365 (508)
T KOG1365|consen 354 IEVFPCSVEELN 365 (508)
T ss_pred EEEeeccHHHHH
Confidence 999987655444
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.50 E-value=0.00083 Score=51.18 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=52.2
Q ss_pred CCcEEEEcCCC------CCCcH---HHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 52 KAAVLYIGRIR------HGFYE---KEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 52 ~~~~l~V~nLp------~~~te---~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
+..||.|.-+. ..+.+ .+|-+.|..||.+.-+++..+ .-+|+|.+..+|.+|+ .++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------------~mwVTF~dg~sALaal-s~dg 91 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------------TMWVTFRDGQSALAAL-SLDG 91 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------------CEEEEESSCHHHHHHH-HGCC
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------------eEEEEECccHHHHHHH-ccCC
Confidence 55677776554 12332 256677889999888877664 4699999999999999 7899
Q ss_pred ceeCCeEEEEEEeCCC
Q 047513 123 YLLFEHILQVHLIPPE 138 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~~ 138 (221)
..++|+.|+|.+-.|.
T Consensus 92 ~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTPD 107 (146)
T ss_dssp SEETTEEEEEEE----
T ss_pred cEECCEEEEEEeCCcc
Confidence 9999999999997665
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00042 Score=62.18 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHH
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFS-QFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADA 119 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (221)
+-++.+|||||+||.-++.++|..+|. -||.|.++-|-+|+. -+-++|-|-|+|.+..+-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k-----~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK-----LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc-----cCCCCCcceeeecccHHHHHHHhh
Confidence 445778999999999999999999999 499999999999966 678999999999999999999853
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00032 Score=61.56 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=61.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCc--------eeEEEEEECCHHHHHHH
Q 047513 45 EEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKS--------KHFGFIEFNDPEVAEVV 116 (221)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~--------~g~afV~f~~~~~a~~a 116 (221)
..+.++.++++|.+-|||.+-.-+.|.++|+.+|.|..|+|.....-+..+.|.+ +-||+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 3344456889999999999988899999999999999999877621111112222 57899999999999999
Q ss_pred HHHhCCce
Q 047513 117 ADAMHGYL 124 (221)
Q Consensus 117 l~~l~g~~ 124 (221)
.+.|+...
T Consensus 303 ~e~~~~e~ 310 (484)
T KOG1855|consen 303 RELLNPEQ 310 (484)
T ss_pred HHhhchhh
Confidence 98776543
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.29 E-value=0.00058 Score=64.89 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=74.1
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHH
Q 047513 32 FLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPE 111 (221)
Q Consensus 32 ~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~ 111 (221)
+..|.....+...... .....+.+||++|+.++....|...|..||.|..|.+-. ..-|+||.|++..
T Consensus 435 ~~~I~~g~~r~glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----------gq~yayi~yes~~ 502 (975)
T KOG0112|consen 435 GPLIGNGTHRIGLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----------GQPYAYIQYESPP 502 (975)
T ss_pred CCccccCccccccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----------CCcceeeecccCc
Confidence 4444433444433321 233678899999999999999999999999998876532 2469999999999
Q ss_pred HHHHHHHHhCCceeCC--eEEEEEEeCCC
Q 047513 112 VAEVVADAMHGYLLFE--HILQVHLIPPE 138 (221)
Q Consensus 112 ~a~~al~~l~g~~l~g--r~i~v~~a~~~ 138 (221)
.++.|+..|.|..|++ +.|+|.++.+-
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999999985 77999998654
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.24 E-value=0.0024 Score=45.78 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEE-EeecCcccc-cCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe-
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLR-IARNKKLRV-LNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH- 128 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~~~~~-~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr- 128 (221)
..+.|.|=+.|+..+ ..+-++|++||.|.+.. +..+....- ........+-.|.|.++.+|.+|| ..||..|+|.
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 445678889999854 55667899999997664 111000000 000123468889999999999999 5699999885
Q ss_pred EEEEEEeC
Q 047513 129 ILQVHLIP 136 (221)
Q Consensus 129 ~i~v~~a~ 136 (221)
.+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577664
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0023 Score=57.55 Aligned_cols=125 Identities=20% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCcee---EEEEEECCHHHHHHHHHHhCCceeC
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKH---FGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g---~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
..-++.||||+||++++|+.|...|..||.+. |..+..... ..--.++| |+|+.|+++.+...-+.++.- +
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~--~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANS--RGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccc--cccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 34567899999999999999999999999863 333321110 00112455 999999999988876654432 3
Q ss_pred CeEEEEEEeCCCc----cccccccccCCCCC-----C-CchHHHHHHhhcccCCHHHHHHHHHH
Q 047513 127 EHILQVHLIPPEH----VHLKLWRGFNCQYK-----P-LDWVEVECKRLNKVRTLEEHKKLMEK 180 (221)
Q Consensus 127 gr~i~v~~a~~~~----~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (221)
+..+-+.+..|.. .+-..|.-++..|- + .+...++...+.+..+.++...+.+.
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 3333333333321 22233433333221 2 34455677777777777777666664
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.09 E-value=0.0024 Score=54.79 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCC----CCc-------HHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRH----GFY-------EKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
..++|.+.|+-. ..+ .++|++--.+||.|..|.|.- ..+.|.+-|.|.+.+.|..||..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---------~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---------RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---------cCCCceeEEEeCChHHHHHHHHHh
Confidence 668899998722 222 245666678999999886643 234689999999999999999999
Q ss_pred CCceeCCeEEEEEEeCCC
Q 047513 121 HGYLLFEHILQVHLIPPE 138 (221)
Q Consensus 121 ~g~~l~gr~i~v~~a~~~ 138 (221)
+|..|+||.|...+....
T Consensus 335 ~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDGK 352 (382)
T ss_pred cCeeecceEEEEEEeCCc
Confidence 999999999998876543
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.0028 Score=50.02 Aligned_cols=63 Identities=8% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
....|.|++||++.++++|++++..-|.|....+.++ |.+.|+|...++++-|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4568999999999999999999999999998888776 58999999999999999999987765
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.97 E-value=0.0017 Score=56.65 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..+.|.|.||.+.+|.++++.+|+..|.|..+.++.+... .........|||.|.|...+..|- +|.+++|-++.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d--~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdrali 82 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDD--SKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALI 82 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCC--ccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEE
Confidence 3458999999999999999999999999999988774320 001235678999999999888774 8888888888777
Q ss_pred EEEe
Q 047513 132 VHLI 135 (221)
Q Consensus 132 v~~a 135 (221)
|..+
T Consensus 83 v~p~ 86 (479)
T KOG4676|consen 83 VRPY 86 (479)
T ss_pred EEec
Confidence 7655
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.86 E-value=0.00055 Score=56.44 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=53.2
Q ss_pred HHHHHHHh-ccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCc
Q 047513 68 KEMHAFFS-QFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 68 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~ 139 (221)
+++...|. +||+|..+.|..+. .-...|-+||.|...++|++|+..||+..+.|++|.+.+..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl------~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL------GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc------chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 34555555 89999988665553 24568999999999999999999999999999999999975433
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.84 E-value=0.0017 Score=56.48 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc----CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQF----GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
.-.|...+||+++++.++.+||..- |....|.++..+ .|+..|-|||.|..+++|+.|+.. |...++.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp------dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP------DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC------CCCcccceEEEecCHHHHHHHHHH-HHHHHhHH
Confidence 4467778999999999999999742 345567677766 499999999999999999999954 66666666
Q ss_pred EEEEEEe
Q 047513 129 ILQVHLI 135 (221)
Q Consensus 129 ~i~v~~a 135 (221)
.|.+..+
T Consensus 234 YIElFRS 240 (508)
T KOG1365|consen 234 YIELFRS 240 (508)
T ss_pred HHHHHHH
Confidence 6655443
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.00056 Score=64.63 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
-..|+|+|.|+..|.+.|+.+++.+|.+.+++++..+. |+++|.|+|.|.+..++.++....+...+....+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~------gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA------GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc------cccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 35699999999999999999999999999999998885 999999999999999999998888888888888888
Q ss_pred EEeCCCccc
Q 047513 133 HLIPPEHVH 141 (221)
Q Consensus 133 ~~a~~~~~~ 141 (221)
..+.|....
T Consensus 810 ~vsnp~~~K 818 (881)
T KOG0128|consen 810 QVSNPERDK 818 (881)
T ss_pred cccCCcccc
Confidence 887774433
No 120
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0018 Score=53.49 Aligned_cols=84 Identities=24% Similarity=0.250 Sum_probs=66.8
Q ss_pred ccccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEE
Q 047513 26 RKDAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFI 105 (221)
Q Consensus 26 ~~~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV 105 (221)
+...+|+...-|+..+....- . ..|||.||+..++.+.|.+.|+.||.|....+..|. .+++.+-++|
T Consensus 10 ak~eLd~~~~~~~~lr~rfa~-----~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~------r~k~t~eg~v 77 (275)
T KOG0115|consen 10 AKRELDGRFPKGRSLRVRFAM-----H-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD------RGKPTREGIV 77 (275)
T ss_pred HHHhcCCCCCCCCceEEEeec-----c-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc------cccccccchh
Confidence 334566666666655543332 2 679999999999999999999999999877666665 4889999999
Q ss_pred EECCHHHHHHHHHHhC
Q 047513 106 EFNDPEVAEVVADAMH 121 (221)
Q Consensus 106 ~f~~~~~a~~al~~l~ 121 (221)
.|...-.+..|+..++
T Consensus 78 ~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCR 93 (275)
T ss_pred hhhcchhHHHHHHHhc
Confidence 9999999999988774
No 121
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.56 E-value=0.0027 Score=57.99 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee---CC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQ-FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL---FE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l---~g 127 (221)
.+..|||.||-.-+|.-+|+.+++. +|.|... ..| +.+.+|||.|.+.++|.....+|||..+ ++
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD---------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD---------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HHH---------HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 5678999999999999999999995 6666655 222 3467999999999999999999999876 46
Q ss_pred eEEEEEEeC
Q 047513 128 HILQVHLIP 136 (221)
Q Consensus 128 r~i~v~~a~ 136 (221)
+.|.+.|..
T Consensus 512 K~L~adf~~ 520 (718)
T KOG2416|consen 512 KHLIADFVR 520 (718)
T ss_pred ceeEeeecc
Confidence 889998874
No 122
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.54 E-value=0.0021 Score=56.57 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=60.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce-eCCeEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL-LFEHILQVH 133 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~-l~gr~i~v~ 133 (221)
.+|+|||.+.++..+|+.+|...-.-..-.++. -.||+||.+.+...|.+|++.++|.. +.|.++.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----------ecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 589999999999999999997641111111111 13899999999999999999999965 889999999
Q ss_pred EeCCCccc
Q 047513 134 LIPPEHVH 141 (221)
Q Consensus 134 ~a~~~~~~ 141 (221)
..-|+..+
T Consensus 72 ~sv~kkqr 79 (584)
T KOG2193|consen 72 HSVPKKQR 79 (584)
T ss_pred chhhHHHH
Confidence 98877654
No 123
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.48 E-value=0.05 Score=39.72 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQF-GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
....+.+...|+.++..+|..+.+.+ ..|..+++.++. ..++-.+++.|.+...|..-...+||..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-------~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-------TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-------CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555555556666676555555 467788998873 4578889999999999999999999998874
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.00034 Score=66.00 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
...++||+||+..+.+.+|...|..+|.+..+.+.-... .++.+|+||++|.+++.+.+|+....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n-----~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN-----EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh-----ccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 346799999999999999999999999887776654444 7899999999999999999999665555554
No 125
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.44 E-value=0.021 Score=49.69 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=63.8
Q ss_pred CCcEEEEcCC--CCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC--
Q 047513 52 KAAVLYIGRI--RHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE-- 127 (221)
Q Consensus 52 ~~~~l~V~nL--p~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g-- 127 (221)
.+..|.+.-| -+.+|-+.|+.+-...|.|.+|.|+.. +| -.|.|+|++.+.|++|...|||..|..
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-------ng---VQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-------NG---VQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-------cc---eeeEEeechhHHHHHHHhhcccccccccc
Confidence 4455555544 446888999999999999999988765 23 479999999999999999999988763
Q ss_pred eEEEEEEeCCCcc
Q 047513 128 HILQVHLIPPEHV 140 (221)
Q Consensus 128 r~i~v~~a~~~~~ 140 (221)
-.|+|++|+|.+.
T Consensus 189 CTLKIeyAkP~rl 201 (494)
T KOG1456|consen 189 CTLKIEYAKPTRL 201 (494)
T ss_pred eeEEEEecCccee
Confidence 5689999998765
No 126
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.95 E-value=0.053 Score=37.42 Aligned_cols=56 Identities=18% Similarity=0.406 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
.....||+ .|......||.++|+.||.| .|..+.+ .-|||...+.+.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d------------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND------------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT------------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC------------CcEEEEeecHHHHHHHHHHhc
Confidence 44677786 99999999999999999986 4555555 369999999999999988775
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.85 E-value=0.0036 Score=53.61 Aligned_cols=83 Identities=16% Similarity=0.359 Sum_probs=60.9
Q ss_pred cEEEEcCCCCCCcHHH-HH--HHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 54 AVLYIGRIRHGFYEKE-MH--AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~-L~--~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.-+||-+|+.....+. |. .+|.+||.|..|.+..+.... ...+ ...-+||+|...++|..||...+|..+.|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~-s~~~-~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSS-SSSG-GTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccc-cCCC-CCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3478888887755444 33 589999999998877754100 0012 22348999999999999999999999999998
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
++.+..+.
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88876554
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.73 E-value=0.0035 Score=59.74 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...+++||+|||+..+++.+|+..|..+|.|..|.|-+... +...-|+||.|.+...+..|...+.+..|+.-.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------CcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 34678999999999999999999999999999998877643 556689999999999999999999998888667
Q ss_pred EEEEEeCC
Q 047513 130 LQVHLIPP 137 (221)
Q Consensus 130 i~v~~a~~ 137 (221)
+++.+..+
T Consensus 443 ~r~glG~~ 450 (975)
T KOG0112|consen 443 HRIGLGQP 450 (975)
T ss_pred cccccccc
Confidence 77776654
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.71 E-value=0.019 Score=45.47 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCe---eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQ-FGTI---KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
....|.|++||++.|++++...++. ++.- .++.-...... .......-|||.|.+.+++..-...++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~---~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS---FKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS---STTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc---CCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999998887776 6654 33331122110 011235679999999999999999999988753
Q ss_pred -----eEEEEEEeCC
Q 047513 128 -----HILQVHLIPP 137 (221)
Q Consensus 128 -----r~i~v~~a~~ 137 (221)
..-.|.+|.-
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 3456666654
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.66 E-value=0.09 Score=34.24 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc---CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQF---GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
.+..|+|.|+.. ++.+++..+|..| .....|..+-|. -|-|.|.+.+.|.+|+.+|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------------cEEEEECCHHHHHHHHHcC
Confidence 346799999954 7788999999998 134677777774 4789999999999999764
No 131
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.64 E-value=0.051 Score=45.98 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 047513 68 KEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 137 (221)
Q Consensus 68 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~ 137 (221)
.++.+...+||.|..|.|...+.. .-.-.---||+|...++|.+|+-.|||..|+||.+...+..-
T Consensus 301 de~keEceKyg~V~~viifeip~~----p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQ----PEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCC----ccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 356667889999999988776431 111224579999999999999999999999999998887643
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.36 E-value=0.013 Score=54.76 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR-LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+..|||-.||..+++.++-.+|...-.|.+ |.+.+.+ +++.++.|||.|..++++..|+..-+.+.++.+.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P------~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP------TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC------cccccchhhheeccccccchhhhcccccccCceE
Confidence 35678999999999999999999988666666 7776666 6889999999999988888887666777788899
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|+-..
T Consensus 506 irv~si~ 512 (944)
T KOG4307|consen 506 IRVDSIA 512 (944)
T ss_pred EEeechh
Confidence 9998643
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.17 E-value=0.015 Score=51.95 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=60.9
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 53 AAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 53 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+.|-+.-.|+. -+-++|..+|.+||.|..|.+-... -.|.|+|.+..+|-.|. ..++..|+++.|+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----------~~a~vTF~t~aeag~a~-~s~~avlnnr~iK 439 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIK 439 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----------hhheeeeeccccccchh-ccccceecCceeE
Confidence 344545555555 3568899999999999998775543 47899999999997776 6799999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.|..|...+
T Consensus 440 l~whnps~~t 449 (526)
T KOG2135|consen 440 LFWHNPSPVT 449 (526)
T ss_pred EEEecCCccc
Confidence 9999886543
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.68 E-value=0.14 Score=39.00 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCCCcH-H---HHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 52 KAAVLYIGRIRHGFYE-K---EMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te-~---~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
+=.||.|.=|..++.. + .+...++.||+|.+|.+. | +.-|.|.|.|..+|-.|+.+++. ...|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------G--rqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------G--RQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------C--CceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 4468888766555432 3 445567789999988652 2 35799999999999999988876 4567
Q ss_pred eEEEEEEe
Q 047513 128 HILQVHLI 135 (221)
Q Consensus 128 r~i~v~~a 135 (221)
..+.+.|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 77787774
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.56 E-value=0.15 Score=40.64 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=45.8
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC--CceeCCeEEEEEEeCCCc
Q 047513 66 YEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 66 te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~--g~~l~gr~i~v~~a~~~~ 139 (221)
....|+.+|..|+.+..+.....- +-..|.|.+.+.|.+|...|+ +..+.|..++|.++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-----------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-----------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-----------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-----------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999998887665542 357899999999999999999 999999999999985443
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.63 E-value=0.39 Score=40.92 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=53.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE-EE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI-LQ 131 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~-i~ 131 (221)
..-|-|-++|+.-..- +-.+|.+||.|....... .--+-+|-|.+..+|++|| ..||..|+|-. |-
T Consensus 197 D~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~~-----------ngNwMhirYssr~~A~KAL-skng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTPS-----------NGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIG 263 (350)
T ss_pred cceEEEeccCccchhH-HHHHHHhhCeeeeeecCC-----------CCceEEEEecchhHHHHhh-hhcCeeeccceEEe
Confidence 4456666888875544 556799999987754432 2258999999999999999 56999998754 55
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|..+.-+..
T Consensus 264 VkpCtDksv 272 (350)
T KOG4285|consen 264 VKPCTDKSV 272 (350)
T ss_pred eeecCCHHH
Confidence 665544433
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.60 E-value=0.32 Score=43.49 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQF-GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
++.|+|-.+|-.++..||-.|...+ -.|.+++++++. -..+-..++.|.+..+|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-------~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-------MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-------CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998876 468899999974 3456788899999999999999999998874
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.47 E-value=0.6 Score=31.30 Aligned_cols=67 Identities=27% Similarity=0.416 Sum_probs=38.3
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhccCC-----eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 55 VLYIG-RIRHGFYEKEMHAFFSQFGT-----IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 55 ~l~V~-nLp~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
++||. +=-..++..+|-.++...+. |-.|.+..+ |+||+-.. +.+..++..|++..+.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------------~S~vev~~-~~a~~v~~~l~~~~~~gk 67 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------------FSFVEVPE-EVAEKVLEALNGKKIKGK 67 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------------EEEEE-T-T-HHHHHHHHTT--SSS-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------------EEEEEECH-HHHHHHHHHhcCCCCCCe
Confidence 45553 22335788899999887653 445665443 78888665 477888999999999999
Q ss_pred EEEEEEe
Q 047513 129 ILQVHLI 135 (221)
Q Consensus 129 ~i~v~~a 135 (221)
.++|+.|
T Consensus 68 ~v~ve~A 74 (74)
T PF03880_consen 68 KVRVERA 74 (74)
T ss_dssp ---EEE-
T ss_pred eEEEEEC
Confidence 9999875
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.26 E-value=0.2 Score=42.79 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...+++|++++.+.+.+.+...++..+|.+....+..... ...++|++++.|...+.+..|+...-.+.+.+..+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----SLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhcc-----ccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 4678999999999999888888999999877776666555 68899999999999999999995433346666665
Q ss_pred EEEEeCC
Q 047513 131 QVHLIPP 137 (221)
Q Consensus 131 ~v~~a~~ 137 (221)
...+...
T Consensus 161 ~~dl~~~ 167 (285)
T KOG4210|consen 161 EKDLNTR 167 (285)
T ss_pred cCccccc
Confidence 5555433
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.67 E-value=0.12 Score=48.23 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
+..+..++||+|+...+..+-+..+...+|.|..+... -|||+.|.......+|+..++-..++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------------~fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------------KFGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------------hhcccchhhHHHHHHHHHHhcccCCCcc
Confidence 44567899999999999999999999999988765321 2899999999999999999998889888
Q ss_pred EEEEEE
Q 047513 129 ILQVHL 134 (221)
Q Consensus 129 ~i~v~~ 134 (221)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 877665
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.54 E-value=0.13 Score=49.26 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=59.0
Q ss_pred EEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee--CCeEEEEEE
Q 047513 57 YIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL--FEHILQVHL 134 (221)
Q Consensus 57 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l--~gr~i~v~~ 134 (221)
++.|.+-..+...|..+++.||.|.+....++-. +|.|+|...+.|-.|+++|+|..+ .|-+.+|.+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc-----------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 3334455677788999999999999988777654 899999999999999999999874 478899999
Q ss_pred eCCCc
Q 047513 135 IPPEH 139 (221)
Q Consensus 135 a~~~~ 139 (221)
|++-.
T Consensus 371 ak~~~ 375 (1007)
T KOG4574|consen 371 AKTLP 375 (1007)
T ss_pred ccccc
Confidence 87643
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.40 E-value=0.55 Score=43.16 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQ--FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG--YLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g--~~l~ 126 (221)
..-|.|.++-||..+..++++.+|.. |-.+++|.+..+.. =||+|++..+|+.|...|.. ..|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------------WyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------------WYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------------eEEEeecchhHHHHHHHHHHHHHhhc
Confidence 35578999999999999999999986 67888888866532 48999999999999887765 3477
Q ss_pred CeEEEEEE
Q 047513 127 EHILQVHL 134 (221)
Q Consensus 127 gr~i~v~~ 134 (221)
|++|...+
T Consensus 241 gKpImARI 248 (684)
T KOG2591|consen 241 GKPIMARI 248 (684)
T ss_pred Ccchhhhh
Confidence 87776554
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.95 E-value=0.74 Score=42.20 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=48.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC----CeE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFS-QFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF----EHI 129 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~----gr~ 129 (221)
++-|.|+|-..|...|...-. ..|.-..+.++.|-. +....|||||.|.+++.+..+.+++||..+. .+.
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~-----nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFK-----NKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccc-----cccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 344444444444333333311 145555556666644 5567899999999999999999999997643 344
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
..+.||.
T Consensus 465 a~itYAr 471 (549)
T KOG4660|consen 465 ASITYAR 471 (549)
T ss_pred eeeehhh
Confidence 5555554
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.47 E-value=3.3 Score=27.25 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 64 GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 64 ~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
.++-++++..+..|+- .. |..++ + || ||.|.+..+|+++....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~------t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR------T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC------C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999974 23 33444 3 33 89999999999999999999988777654
No 145
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.95 E-value=4.9 Score=37.35 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHHhcc----CCeeEEEEeecCcc-----cccCCCC-----------------------
Q 047513 52 KAAVLYIGRIRHG-FYEKEMHAFFSQF----GTIKRLRIARNKKL-----RVLNTGK----------------------- 98 (221)
Q Consensus 52 ~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~~~-----~~~~tg~----------------------- 98 (221)
...+|-|=||.|+ +...+|.-+|+.| |.|.+|.|...... ...+.|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 5678999999997 7889999999986 68888887654321 0011222
Q ss_pred --------------ceeEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 047513 99 --------------SKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLI 135 (221)
Q Consensus 99 --------------~~g~afV~f~~~~~a~~al~~l~g~~l~g--r~i~v~~a 135 (221)
..-||.|+|.+...|......++|..|.. ..|-+.|.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 23589999999999999999999999984 45555554
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=81.71 E-value=0.3 Score=39.82 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=60.9
Q ss_pred ccccCCccccCCCCCCCCCCCCCCCCCCcEEEEcC----CCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCcee
Q 047513 26 RKDAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGR----IRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKH 101 (221)
Q Consensus 26 ~~~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g 101 (221)
+...+||..|.+.++.+. ++-|+ |...++++.+...|++-|.+..+++.++.+ |+++-
T Consensus 65 a~~L~ng~~l~~~e~q~~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d------~rnrn 126 (267)
T KOG4454|consen 65 AGQLENGDDLEEDEEQRT------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND------GRNRN 126 (267)
T ss_pred hhhhcccchhccchhhcc------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc------CCccC
Confidence 344567777776655543 44455 666789999999999999999999998874 88999
Q ss_pred EEEEEECCHHHHHHHHHHhCCc
Q 047513 102 FGFIEFNDPEVAEVVADAMHGY 123 (221)
Q Consensus 102 ~afV~f~~~~~a~~al~~l~g~ 123 (221)
++|+.+......-.++....+.
T Consensus 127 ~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 127 FGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccchhhhhhhcCcHHhhhhccc
Confidence 9999998777777777665544
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.05 E-value=4.6 Score=35.94 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHH
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTI-KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVAD 118 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 118 (221)
+=.++|-|.++|.....+||-..|..||.- -+|.++-+ -++|..|.+...|..|+.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------------ceeEEeecchHHHHHHhh
Confidence 345789999999999999999999999752 34444444 379999999999999984
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.49 E-value=0.29 Score=43.07 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
.++++|++|+..+...++-+.|..+|.|.+..+.. |....+|-++|........|+ .++|..+.-...++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS---------KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRR 220 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------cCCCcchhhhHhhhhhHHHHH-Hhcchhhhhhhhhh
Confidence 37899999999999999999999999988766533 334457779999888888888 56887776555555
Q ss_pred EEeCCCcc
Q 047513 133 HLIPPEHV 140 (221)
Q Consensus 133 ~~a~~~~~ 140 (221)
....|...
T Consensus 221 ai~kP~kK 228 (479)
T KOG4676|consen 221 AIIKPHKK 228 (479)
T ss_pred hhcCcccc
Confidence 55555443
No 149
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.92 E-value=3.6 Score=34.88 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCC------------CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCce-----eEEE---------E
Q 047513 52 KAAVLYIGRIRHG------------FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSK-----HFGF---------I 105 (221)
Q Consensus 52 ~~~~l~V~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~-----g~af---------V 105 (221)
.+.|||+.+||-. .++.-|+..|..||.|..|.|+-....+..++|+.. ||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 5568888888742 466789999999999999887543222333455553 3433 3
Q ss_pred EECCHHHHHHHHHHhCCcee
Q 047513 106 EFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 106 ~f~~~~~a~~al~~l~g~~l 125 (221)
.|-.-.....|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 33333334456667776543
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=73.49 E-value=0.1 Score=46.24 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEE-eecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRI-ARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..++.+-|.|+|+...++.|..++.+||.+..|.. +.+.. .-..-|+|...+.+..|+..|+|..+....
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---------tavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---------TAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---------HHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 35577999999999999999999999999988854 33433 122336788999999999999999999998
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
+.+.|..
T Consensus 149 ~k~~YiP 155 (584)
T KOG2193|consen 149 LKVGYIP 155 (584)
T ss_pred hhcccCc
Confidence 8888763
No 151
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.12 E-value=15 Score=23.81 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=14.9
Q ss_pred HHHHHHHhccCCeeEEEE
Q 047513 68 KEMHAFFSQFGTIKRLRI 85 (221)
Q Consensus 68 ~~L~~~F~~~G~i~~v~i 85 (221)
.+||++|+.+|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876554
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.69 E-value=16 Score=26.84 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=29.3
Q ss_pred cEEEEcCCCCC---------CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCH-HHHHHHH
Q 047513 54 AVLYIGRIRHG---------FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDP-EVAEVVA 117 (221)
Q Consensus 54 ~~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~-~~a~~al 117 (221)
.++.|-|++.. .+.+.|.+.|..|..+. +....+. .-..|+++|.|..- .--..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------TEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------CCCcEEEEEEECCChHHHHHHH
Confidence 35566666443 35578999999998864 5555553 34689999999854 3444454
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=58.96 E-value=26 Score=29.92 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=34.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCH
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDP 110 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~ 110 (221)
+-||++|||.++.-.||...+...|.+ -..+.+. | +.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--------g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--------G-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee--------c-CCcceeEecCCc
Confidence 469999999999999999999887753 2233332 1 357899999764
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=55.04 E-value=21 Score=23.73 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=42.3
Q ss_pred HHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 047513 68 KEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 135 (221)
Q Consensus 68 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a 135 (221)
++|.+.|..+| .+..+.-+..++ ++.+.-.-+|+.....+... .|+=..++|+.+.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~-----~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD-----TKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC-----CCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46778888888 678888888877 66677778888765432222 45556678888888753
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=52.75 E-value=17 Score=29.06 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCc
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKK 90 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 90 (221)
.....+++++++..++...+...|..+|.+....+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 3567899999999999999999999999997776666543
No 156
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.47 E-value=39 Score=22.24 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred HHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 047513 68 KEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 136 (221)
Q Consensus 68 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~ 136 (221)
++|.+.|...| .|..+.-+..+. ++.+.-.-||+.....+.. +.++=..+++..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~-----~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRN-----TKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCC-----CCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 46777888877 678887777775 5777788888887655433 2345566788888887643
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.13 E-value=3 Score=38.52 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+++|+.|++++++-.+|..+...+--+..+.+...-. ......+++|+|.---....|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~a-----ek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINA-----EKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchH-----HHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 457899999999999999999988876555555444332 2345678899999877777888888987665433
No 158
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.86 E-value=57 Score=22.63 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEEC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFN 108 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~ 108 (221)
...-||||+++..+.+.-...+.+..+.-.-+ +.... ....||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~-------~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSD-------NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEcc-------CCCCCEEEEEeC
Confidence 34569999999988876555555544443333 33332 227799998873
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.70 E-value=60 Score=27.87 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccc--cCCCCceeEEEEEECCHHHHHHH----HHHhCC--c
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRV--LNTGKSKHFGFIEFNDPEVAEVV----ADAMHG--Y 123 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~--~~tg~~~g~afV~f~~~~~a~~a----l~~l~g--~ 123 (221)
..+.|...|+..+++-..+-..|.+||+|.+|.++.+...+- ...........+.|-+.+.|..- ++.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 456788889998888888888899999999999988751000 00123456788899988887643 333443 3
Q ss_pred eeCCeEEEEEEeC
Q 047513 124 LLFEHILQVHLIP 136 (221)
Q Consensus 124 ~l~gr~i~v~~a~ 136 (221)
.+....|.+.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4667777777754
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.44 E-value=54 Score=29.08 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGT-IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
....|.|.+||+..++.+|.+-...|-. +....+....... -..-.+.+||.|...++...-...++|+.|-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~---~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESL---RNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccc---hhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3467889999999999998887776532 2223333211100 0113588999999999988888888998753
No 161
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.83 E-value=44 Score=27.78 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRL 83 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 83 (221)
.....+|+-|+|..+|++.|.++.+++|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 355789999999999999999999999865443
No 162
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.80 E-value=74 Score=25.37 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCCCcH-----HHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGFYE-----KEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
-++++++-+++..+-. .....+|.+|.+.....+.+ +.+.--|.|.++..|..|.-.+++..|.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----------sfrrvRi~f~~p~~a~~a~i~~~~~~f~ 77 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----------SFRRVRINFSNPEAAADARIKLHSTSFN 77 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----------hhceeEEeccChhHHHHHHHHhhhcccC
Confidence 3455667777665322 22344555555443333332 2356678999999999999999999999
Q ss_pred Ce-EEEEEEeCCCc
Q 047513 127 EH-ILQVHLIPPEH 139 (221)
Q Consensus 127 gr-~i~v~~a~~~~ 139 (221)
|+ .+...++.+..
T Consensus 78 ~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 78 GKNELKLYFAQPGH 91 (193)
T ss_pred CCceEEEEEccCCC
Confidence 88 78887776543
No 163
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.21 E-value=2.1e+02 Score=25.99 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHHhcc----CCeeEEEEeecCcc-----cccCCC------------------------
Q 047513 52 KAAVLYIGRIRHG-FYEKEMHAFFSQF----GTIKRLRIARNKKL-----RVLNTG------------------------ 97 (221)
Q Consensus 52 ~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~~~-----~~~~tg------------------------ 97 (221)
+..+|-|-||.|+ +...+|.-.|+.| |.+..|.|...... +..+.|
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~ 224 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF 224 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence 4457888899997 7778999999875 56776765442211 000000
Q ss_pred --------------C-----------------ceeEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 047513 98 --------------K-----------------SKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLI 135 (221)
Q Consensus 98 --------------~-----------------~~g~afV~f~~~~~a~~al~~l~g~~l~g--r~i~v~~a 135 (221)
. ..-||.|++.+.+.+......++|..+.. ..+.+.+.
T Consensus 225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 02488899999999999999999988764 44555544
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=28.20 E-value=1e+02 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEECCHHHHHHHHHHhC-CceeCCeEEEEEEe
Q 047513 103 GFIEFNDPEVAEVVADAMH-GYLLFEHILQVHLI 135 (221)
Q Consensus 103 afV~f~~~~~a~~al~~l~-g~~l~gr~i~v~~a 135 (221)
|+|+|.+...|++.+..-. ...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 6899999999999885322 23466666666654
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.03 E-value=80 Score=26.64 Aligned_cols=36 Identities=3% Similarity=0.018 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeec
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARN 88 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 88 (221)
.....|+|||+++|..-+..++...-.+....+|..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 346779999999999999988877544444444443
No 166
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.14 E-value=1.1e+02 Score=21.66 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCH
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDP 110 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~ 110 (221)
...-||||+++..+.+.--..+-+.++.-. +.+... +....||+|-++-+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~-avmv~~-------~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGN-VVMAWA-------TNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-EEEEEc-------CCCCCCcEEEecCCC
Confidence 345699999988877654444444454422 223332 233459999887653
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.13 E-value=97 Score=26.43 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 047513 103 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 137 (221)
Q Consensus 103 afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~ 137 (221)
|||+|.+..+|..|++.+.... ++.+.+..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999998655443 34457776643
No 168
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=12 Score=33.79 Aligned_cols=76 Identities=5% Similarity=-0.158 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
+..|+..+|-.+++.++.-.|..||-|..+...+... .|...-.+|+.-.. ..+..++..+--..+.|..+++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~-----~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVN-----GSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCcccc-----CCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhh
Confidence 4556778888899999999999999998877665544 56666677776543 33444554444455556666666
Q ss_pred Ee
Q 047513 134 LI 135 (221)
Q Consensus 134 ~a 135 (221)
++
T Consensus 78 ~~ 79 (572)
T KOG4365|consen 78 VS 79 (572)
T ss_pred cC
Confidence 65
No 169
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.76 E-value=1.4e+02 Score=27.51 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCc---HHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 54 AVLYIGRIRHGFY---EKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 54 ~~l~V~nLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.-=+||||+.-.. ...+..+=.+||.|-.+++-.. -.|.-.+.+.|..|+. -|+..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~--------------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV--------------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc--------------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4446788866433 3455666668999987777443 3588899999999995 48888988885
No 170
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.73 E-value=3.7e+02 Score=24.83 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHh----ccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFS----QFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
+..+.++.-....+..+|..+|. .+|-|+.+.+...+. .......++.|.+.+++..++..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~------p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK------PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC------CcceEEEEEECCCHHHHHHHHHHHH
Confidence 34455543222233456667665 577888887766553 3345677889999999998887754
No 171
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=40 Score=30.20 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCCcHH--------HHHHHHhc--cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHH
Q 047513 52 KAAVLYIGRIRHGFYEK--------EMHAFFSQ--FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVA 117 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al 117 (221)
..+.+|+.+++...+.+ ++...|.. .|.+..+..-++.. ...++|..|++|...+.+++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~-----nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWL-----NKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhh-----hccccCcccccccChHHHHHHh
Confidence 34678888887765544 88999988 67778887777764 4678899999999999999876
No 172
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.12 E-value=1e+02 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh--ccCCe
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFS--QFGTI 80 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~--~~G~i 80 (221)
....++|||||+.++..-|..++. .||.+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CCceEEEEEecccchHHHHHHHhhccccccc
Confidence 456789999999999999988886 35543
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.71 E-value=80 Score=18.13 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHhccCC
Q 047513 63 HGFYEKEMHAFFSQFGT 79 (221)
Q Consensus 63 ~~~te~~L~~~F~~~G~ 79 (221)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36788999999988653
Done!