Query 047513
Match_columns 221
No_of_seqs 246 out of 2065
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-22 3.7E-27 145.7 12.3 86 47-137 13-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 4.2E-22 1.4E-26 140.4 7.3 88 53-145 1-90 (91)
3 3s8s_A Histone-lysine N-methyl 99.9 3.6E-21 1.2E-25 140.4 11.5 89 52-145 5-93 (110)
4 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-20 6.9E-25 129.9 12.0 83 51-138 4-86 (87)
5 3md1_A Nuclear and cytoplasmic 99.8 3E-20 1E-24 127.9 12.3 82 53-139 1-82 (83)
6 2dgo_A Cytotoxic granule-assoc 99.8 1E-19 3.4E-24 133.1 14.7 88 50-142 12-99 (115)
7 4f25_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 135.7 11.6 83 52-141 4-86 (115)
8 2x1f_A MRNA 3'-END-processing 99.8 5.2E-20 1.8E-24 130.5 11.8 85 52-141 1-85 (96)
9 1whw_A Hypothetical protein ri 99.8 8.3E-20 2.8E-24 130.0 12.3 86 51-141 6-91 (99)
10 2cq0_A Eukaryotic translation 99.8 6.6E-20 2.2E-24 131.5 11.8 87 50-141 12-98 (103)
11 2dgs_A DAZ-associated protein 99.8 8.7E-20 3E-24 130.0 12.2 85 51-141 8-92 (99)
12 2dnz_A Probable RNA-binding pr 99.8 8.4E-20 2.9E-24 128.9 12.0 85 52-141 4-88 (95)
13 1x5u_A Splicing factor 3B subu 99.8 6.2E-20 2.1E-24 132.0 11.5 87 50-141 12-98 (105)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.6E-20 1.9E-24 127.1 10.8 81 51-136 5-85 (85)
15 2cqc_A Arginine/serine-rich sp 99.8 1.2E-19 4E-24 128.1 12.2 82 51-137 13-94 (95)
16 2dnm_A SRP46 splicing factor; 99.8 5.3E-20 1.8E-24 132.0 10.4 87 50-141 10-96 (103)
17 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.2E-24 132.7 12.5 85 52-141 24-108 (115)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.7E-20 2.3E-24 131.2 10.8 87 51-142 10-96 (102)
19 1x5t_A Splicing factor 3B subu 99.8 5.9E-20 2E-24 130.0 10.3 85 52-141 4-89 (96)
20 2do4_A Squamous cell carcinoma 99.8 3E-19 1E-23 127.4 13.9 84 51-140 15-98 (100)
21 2lkz_A RNA-binding protein 5; 99.8 2.2E-20 7.7E-25 132.7 7.8 81 52-137 8-94 (95)
22 3p5t_L Cleavage and polyadenyl 99.8 1.3E-20 4.4E-25 132.2 6.5 83 54-141 2-86 (90)
23 3ns6_A Eukaryotic translation 99.8 1.3E-20 4.6E-25 134.9 6.4 82 52-138 5-93 (100)
24 1p27_B RNA-binding protein 8A; 99.8 9.1E-20 3.1E-24 131.4 10.7 83 52-139 22-104 (106)
25 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-19 5.6E-24 127.1 11.7 81 51-136 14-94 (94)
26 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5.2E-24 128.8 11.5 83 49-136 9-99 (99)
27 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-19 3.6E-24 130.1 10.7 87 50-141 9-95 (102)
28 1x4h_A RNA-binding protein 28; 99.8 1.7E-19 5.9E-24 130.9 11.9 86 51-141 13-104 (111)
29 2cph_A RNA binding motif prote 99.8 1.7E-19 5.8E-24 130.1 11.8 87 50-141 12-100 (107)
30 4a8x_A RNA-binding protein wit 99.8 1E-19 3.5E-24 126.5 10.2 83 52-139 3-86 (88)
31 2jrs_A RNA-binding protein 39; 99.8 2.5E-19 8.5E-24 130.0 12.7 85 50-139 23-107 (108)
32 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4.2E-24 131.6 11.0 85 51-140 24-108 (110)
33 2dng_A Eukaryotic translation 99.8 3.7E-19 1.3E-23 127.7 13.0 85 50-141 12-96 (103)
34 2cqd_A RNA-binding region cont 99.8 5.5E-19 1.9E-23 129.4 14.1 86 50-141 14-99 (116)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-19 4.8E-24 130.4 10.7 87 50-141 10-99 (106)
36 1wi8_A EIF-4B, eukaryotic tran 99.8 2.5E-19 8.5E-24 128.8 11.9 84 51-141 13-97 (104)
37 2div_A TRNA selenocysteine ass 99.8 1.8E-19 6E-24 128.3 10.8 85 51-140 7-96 (99)
38 2lea_A Serine/arginine-rich sp 99.8 4.6E-20 1.6E-24 139.2 7.7 112 25-141 19-130 (135)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 4.2E-19 1.4E-23 127.6 12.5 84 52-141 14-100 (105)
40 2d9p_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 127.9 11.7 85 50-141 12-96 (103)
41 2cpe_A RNA-binding protein EWS 99.8 2.1E-19 7.3E-24 130.9 10.9 87 50-141 12-106 (113)
42 1u6f_A Tcubp1, RNA-binding pro 99.8 4.5E-19 1.5E-23 133.8 12.8 88 50-142 39-126 (139)
43 2cq3_A RNA-binding protein 9; 99.8 9.2E-19 3.2E-23 125.5 13.8 86 49-141 11-96 (103)
44 3ucg_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 124.3 11.1 81 52-138 5-85 (89)
45 2fy1_A RNA-binding motif prote 99.8 3.9E-19 1.3E-23 130.6 12.0 85 51-141 5-89 (116)
46 3s7r_A Heterogeneous nuclear r 99.8 5.4E-19 1.9E-23 122.8 12.0 79 51-135 9-87 (87)
47 3n9u_C Cleavage and polyadenyl 99.8 2.2E-19 7.5E-24 138.8 11.0 83 52-139 54-138 (156)
48 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.5E-19 2.6E-23 125.9 13.1 84 51-141 13-96 (103)
49 2khc_A Testis-specific RNP-typ 99.8 6.3E-19 2.1E-23 129.4 12.9 82 50-136 37-118 (118)
50 2kxn_B Transformer-2 protein h 99.8 1.8E-19 6.3E-24 134.9 10.0 85 50-139 43-127 (129)
51 2dgv_A HnRNP M, heterogeneous 99.8 3.7E-19 1.3E-23 124.8 11.0 83 51-140 6-88 (92)
52 2do0_A HnRNP M, heterogeneous 99.8 1.8E-18 6.3E-23 126.1 14.6 85 51-141 13-97 (114)
53 2dgx_A KIAA0430 protein; RRM d 99.8 6E-19 2E-23 125.2 11.6 82 51-140 7-92 (96)
54 2jwn_A Embryonic polyadenylate 99.8 1.3E-19 4.5E-24 134.2 8.2 82 52-139 35-116 (124)
55 2rs2_A Musashi-1, RNA-binding 99.8 4.1E-19 1.4E-23 129.1 10.5 85 51-141 23-107 (109)
56 3ex7_B RNA-binding protein 8A; 99.8 2.5E-19 8.6E-24 133.0 9.6 86 51-141 20-105 (126)
57 2ywk_A Putative RNA-binding pr 99.8 6.8E-19 2.3E-23 124.2 11.2 80 52-137 15-94 (95)
58 2dh8_A DAZ-associated protein 99.8 5.5E-19 1.9E-23 127.1 10.8 85 51-141 14-98 (105)
59 3ulh_A THO complex subunit 4; 99.8 1.1E-18 3.9E-23 125.7 12.5 81 50-136 26-106 (107)
60 1p1t_A Cleavage stimulation fa 99.8 2.2E-19 7.7E-24 128.8 8.6 85 52-141 7-91 (104)
61 2dhg_A TRNA selenocysteine ass 99.8 5.5E-19 1.9E-23 126.8 10.6 86 51-142 7-94 (104)
62 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.9E-23 121.7 12.4 82 50-139 7-88 (91)
63 2cpf_A RNA binding motif prote 99.8 8.6E-19 2.9E-23 124.4 11.2 88 52-141 4-91 (98)
64 2cqp_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 125.7 9.8 82 52-138 14-95 (98)
65 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-18 5.4E-23 133.5 13.4 86 51-141 37-122 (156)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 2.4E-18 8.2E-23 123.3 13.5 84 51-141 13-96 (103)
67 2err_A Ataxin-2-binding protei 99.8 6E-19 2.1E-23 128.1 10.4 82 50-138 26-107 (109)
68 2ek1_A RNA-binding protein 12; 99.8 3.3E-19 1.1E-23 125.8 8.2 81 52-137 14-94 (95)
69 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-18 4.3E-23 134.1 12.1 86 51-141 68-153 (158)
70 1x4a_A Splicing factor, argini 99.8 2.7E-18 9.1E-23 124.4 12.8 83 51-141 20-102 (109)
71 2mss_A Protein (musashi1); RNA 99.8 2.5E-19 8.5E-24 121.1 6.6 75 55-135 1-75 (75)
72 1s79_A Lupus LA protein; RRM, 99.8 4.7E-19 1.6E-23 127.6 8.5 79 52-137 10-88 (103)
73 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.3E-19 8E-24 128.2 6.6 83 50-139 16-99 (100)
74 2nlw_A Eukaryotic translation 99.8 1.1E-18 3.9E-23 125.8 10.2 80 52-138 14-100 (105)
75 2kt5_A RNA and export factor-b 99.8 8.1E-18 2.8E-22 124.6 15.1 86 50-141 32-117 (124)
76 2cq4_A RNA binding motif prote 99.8 6.2E-19 2.1E-23 128.7 8.9 83 52-140 24-106 (114)
77 1x4b_A Heterogeneous nuclear r 99.8 1.2E-18 4.2E-23 127.6 10.4 84 52-141 26-109 (116)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-18 5.4E-23 134.8 11.7 86 51-141 70-155 (165)
79 2m2b_A RNA-binding protein 10; 99.8 4.5E-19 1.6E-23 132.8 8.0 84 51-140 21-110 (131)
80 2dis_A Unnamed protein product 99.8 8.6E-19 3E-23 126.8 9.2 85 52-141 7-95 (109)
81 2ki2_A SS-DNA binding protein 99.8 1.4E-19 4.8E-24 126.6 4.8 82 54-141 2-83 (90)
82 1fj7_A Nucleolin RBD1, protein 99.8 1.4E-19 4.8E-24 129.3 4.9 85 50-141 14-98 (101)
83 1x4e_A RNA binding motif, sing 99.8 1.7E-19 5.9E-24 124.8 5.2 80 51-135 3-82 (85)
84 1x5o_A RNA binding motif, sing 99.8 5.6E-18 1.9E-22 123.5 13.2 82 51-138 23-112 (114)
85 2cpi_A CCR4-NOT transcription 99.8 9.4E-19 3.2E-23 127.4 8.8 83 52-139 14-102 (111)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.4E-18 8.1E-23 129.6 11.3 81 50-135 60-140 (140)
87 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.2E-19 1.4E-23 120.4 6.3 76 54-135 1-76 (77)
88 3md3_A Nuclear and cytoplasmic 99.8 3.3E-18 1.1E-22 131.3 12.1 105 28-137 59-166 (166)
89 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-18 5.7E-23 124.9 9.3 79 52-141 15-95 (105)
90 1wg5_A Heterogeneous nuclear r 99.8 2.4E-18 8.1E-23 123.9 10.1 84 50-140 12-96 (104)
91 3r27_A HnRNP L, heterogeneous 99.8 4.1E-18 1.4E-22 121.8 10.9 80 49-139 17-98 (100)
92 2a3j_A U1 small nuclear ribonu 99.8 2.4E-18 8.1E-23 128.5 10.0 81 52-140 28-112 (127)
93 1wel_A RNA-binding protein 12; 99.8 6.8E-19 2.3E-23 130.6 6.7 85 49-139 21-105 (124)
94 2fc9_A NCL protein; structure 99.8 6.6E-18 2.3E-22 120.5 11.6 81 51-140 13-93 (101)
95 1fjc_A Nucleolin RBD2, protein 99.8 2.6E-18 8.9E-23 121.5 9.4 83 48-140 11-93 (96)
96 2cpx_A Hypothetical protein FL 99.8 1.2E-18 4.3E-23 127.2 7.9 86 51-141 23-108 (115)
97 2krb_A Eukaryotic translation 99.8 9E-19 3.1E-23 120.3 6.5 73 53-132 1-80 (81)
98 2g4b_A Splicing factor U2AF 65 99.8 4.2E-18 1.4E-22 131.9 10.9 103 29-136 69-172 (172)
99 1nu4_A U1A RNA binding domain; 99.8 1.7E-18 6E-23 122.5 8.0 82 51-140 6-91 (97)
100 3lqv_A PRE-mRNA branch site pr 99.8 3.7E-18 1.3E-22 124.7 9.7 82 51-140 6-87 (115)
101 2db1_A Heterogeneous nuclear r 99.8 5.4E-18 1.9E-22 124.8 10.6 82 51-139 15-99 (118)
102 2fc8_A NCL protein; structure 99.8 1.2E-17 3.9E-22 119.4 11.8 84 50-141 12-95 (102)
103 2ad9_A Polypyrimidine tract-bi 99.8 5.5E-18 1.9E-22 125.0 10.4 80 51-141 29-110 (119)
104 2cpy_A RNA-binding protein 12; 99.8 2.9E-18 1E-22 125.4 8.8 84 51-141 13-97 (114)
105 2cq1_A PTB-like protein L; RRM 99.8 1.4E-17 4.8E-22 119.5 12.2 80 51-141 13-94 (101)
106 2hgl_A HNRPF protein, heteroge 99.7 1.8E-18 6.3E-23 130.6 7.7 84 49-139 40-126 (136)
107 1wez_A HnRNP H', FTP-3, hetero 99.7 5.1E-18 1.8E-22 121.9 9.7 81 52-140 14-94 (102)
108 2j8a_A Histone-lysine N-methyl 99.7 2.9E-17 9.8E-22 121.6 13.2 79 53-136 2-94 (136)
109 2wbr_A GW182, gawky, LD47780P; 99.7 7.8E-18 2.7E-22 116.9 9.5 74 52-136 6-79 (89)
110 1x4d_A Matrin 3; structural ge 99.7 5.9E-18 2E-22 121.6 9.2 77 52-139 14-93 (102)
111 4f02_A Polyadenylate-binding p 99.7 1.6E-18 5.5E-23 139.9 6.9 107 28-141 75-184 (213)
112 3q2s_C Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 139.9 8.9 83 52-139 67-151 (229)
113 2yh0_A Splicing factor U2AF 65 99.7 9.8E-18 3.3E-22 132.7 11.1 85 51-140 112-196 (198)
114 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-18 4.5E-23 117.4 5.1 75 55-135 1-75 (75)
115 1x4c_A Splicing factor, argini 99.7 3.3E-17 1.1E-21 118.5 12.5 79 51-141 13-96 (108)
116 4f02_A Polyadenylate-binding p 99.7 1.9E-17 6.6E-22 133.5 12.4 85 51-140 13-97 (213)
117 2dgu_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 116.8 12.8 82 52-146 10-91 (103)
118 2dnp_A RNA-binding protein 14; 99.7 2.6E-17 9E-22 115.0 11.3 78 51-141 7-84 (90)
119 1why_A Hypothetical protein ri 99.7 3.5E-17 1.2E-21 116.0 12.0 77 52-139 16-94 (97)
120 2dgt_A RNA-binding protein 30; 99.7 4.7E-17 1.6E-21 114.2 12.5 79 50-141 7-85 (92)
121 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-18 6.2E-23 125.1 5.3 83 50-139 8-93 (107)
122 2lcw_A RNA-binding protein FUS 99.6 1.9E-19 6.4E-24 132.0 0.0 87 51-142 5-99 (116)
123 2i2y_A Fusion protein consists 99.7 2E-18 6.9E-23 132.0 5.7 80 50-139 70-149 (150)
124 2dnn_A RNA-binding protein 12; 99.7 8.9E-18 3E-22 122.1 8.7 79 52-138 15-93 (109)
125 2ytc_A PRE-mRNA-splicing facto 99.7 2.7E-17 9.2E-22 113.5 10.6 75 51-136 10-85 (85)
126 1fxl_A Paraneoplastic encephal 99.7 3.9E-17 1.3E-21 125.4 12.5 83 53-140 2-84 (167)
127 2dnq_A RNA-binding protein 4B; 99.7 3.5E-17 1.2E-21 114.4 11.2 78 51-141 6-83 (90)
128 2e5j_A Methenyltetrahydrofolat 99.7 1.6E-17 5.6E-22 117.8 9.6 79 51-139 17-95 (97)
129 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-17 5E-22 121.4 9.5 78 52-138 27-105 (111)
130 2qfj_A FBP-interacting repress 99.7 2.3E-17 8E-22 132.2 11.4 108 28-140 88-207 (216)
131 1x4g_A Nucleolysin TIAR; struc 99.7 3.1E-17 1.1E-21 118.8 10.8 80 51-141 23-102 (109)
132 2cpj_A Non-POU domain-containi 99.7 2.5E-17 8.4E-22 117.2 10.1 79 51-140 13-91 (99)
133 3egn_A RNA-binding protein 40; 99.7 1.7E-17 5.9E-22 125.8 9.8 83 51-141 43-133 (143)
134 1wex_A Hypothetical protein (r 99.7 2.7E-17 9.4E-22 118.6 10.3 79 52-141 14-94 (104)
135 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-17 9E-22 126.8 10.7 84 52-140 2-85 (168)
136 2e44_A Insulin-like growth fac 99.7 2.2E-17 7.4E-22 116.7 9.3 80 51-139 13-93 (96)
137 2la4_A Nuclear and cytoplasmic 99.7 1.9E-17 6.5E-22 118.1 9.0 76 52-138 26-101 (101)
138 2cpd_A Apobec-1 stimulating pr 99.7 1.6E-16 5.5E-21 112.9 13.5 77 51-140 13-91 (99)
139 1b7f_A Protein (SXL-lethal pro 99.7 2.4E-17 8.2E-22 127.0 9.9 103 28-135 63-168 (168)
140 2jvo_A Nucleolar protein 3; nu 99.7 4.4E-17 1.5E-21 118.1 10.4 78 50-140 28-105 (108)
141 2xnq_A Nuclear polyadenylated 99.7 8.5E-17 2.9E-21 114.3 11.4 76 50-138 19-95 (97)
142 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.4E-22 119.2 6.9 81 52-140 8-88 (102)
143 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.7E-22 123.7 7.3 82 51-139 21-106 (123)
144 2hvz_A Splicing factor, argini 99.7 2.8E-17 9.7E-22 117.2 8.5 78 54-141 1-78 (101)
145 2f3j_A RNA and export factor b 99.7 4.1E-17 1.4E-21 128.4 10.2 85 51-141 86-170 (177)
146 2e5g_A U6 snRNA-specific termi 99.7 8.7E-17 3E-21 113.3 10.4 79 52-141 7-85 (94)
147 3pgw_S U1-70K; protein-RNA com 99.7 8E-17 2.7E-21 143.3 12.6 84 52-140 101-184 (437)
148 1l3k_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 128.3 10.2 106 31-142 75-187 (196)
149 1fxl_A Paraneoplastic encephal 99.7 3.9E-17 1.3E-21 125.4 9.2 103 28-135 62-167 (167)
150 1whx_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 118.6 8.6 76 52-138 9-84 (111)
151 1x4f_A Matrin 3; structural ge 99.7 2.9E-17 1E-21 119.8 7.5 79 51-140 23-104 (112)
152 2cqh_A IGF-II mRNA-binding pro 99.7 7.7E-17 2.6E-21 113.2 9.4 79 51-141 6-86 (93)
153 2kvi_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 115.3 8.3 77 51-140 8-85 (96)
154 2cjk_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 125.9 8.2 101 33-139 66-167 (167)
155 2hgn_A Heterogeneous nuclear r 99.7 9.1E-18 3.1E-22 127.2 4.5 84 51-142 44-127 (139)
156 1fje_B Nucleolin RBD12, protei 99.7 4.8E-17 1.6E-21 126.5 8.5 100 29-138 72-174 (175)
157 1l3k_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 125.6 11.4 84 51-140 11-94 (196)
158 1wf1_A RNA-binding protein RAL 99.7 3.7E-16 1.3E-20 113.2 12.5 77 51-140 25-102 (110)
159 2hgm_A HNRPF protein, heteroge 99.7 4.2E-17 1.4E-21 121.5 6.9 80 51-138 40-121 (126)
160 1x5p_A Negative elongation fac 99.7 3.7E-16 1.3E-20 110.7 11.4 78 51-141 13-90 (97)
161 3md3_A Nuclear and cytoplasmic 99.7 2E-16 7E-21 121.2 10.6 81 54-140 1-81 (166)
162 3zzy_A Polypyrimidine tract-bi 99.7 3.7E-16 1.3E-20 116.7 11.6 78 53-140 28-108 (130)
163 1sjr_A Polypyrimidine tract-bi 99.7 2.8E-16 9.5E-21 121.7 11.1 80 52-140 45-126 (164)
164 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-16 4.5E-21 116.5 8.3 79 51-137 6-87 (114)
165 1wg1_A KIAA1579 protein, homol 99.7 2.5E-16 8.4E-21 109.7 9.3 76 52-139 4-79 (88)
166 2diu_A KIAA0430 protein; struc 99.7 3E-16 1E-20 110.0 8.9 74 52-140 7-86 (96)
167 2pe8_A Splicing factor 45; RRM 99.7 5.6E-16 1.9E-20 111.8 10.5 85 52-140 7-96 (105)
168 3nmr_A Cugbp ELAV-like family 99.7 2.6E-16 8.9E-21 121.8 9.4 79 52-136 94-175 (175)
169 3d2w_A TAR DNA-binding protein 99.7 4.9E-16 1.7E-20 108.7 9.8 76 51-140 9-86 (89)
170 3smz_A Protein raver-1, ribonu 99.7 3.6E-16 1.2E-20 130.8 10.5 103 28-140 75-177 (284)
171 2cq2_A Hypothetical protein LO 99.7 3.1E-16 1.1E-20 114.6 8.8 76 52-138 24-106 (114)
172 3smz_A Protein raver-1, ribonu 99.7 2.9E-16 9.8E-21 131.4 9.7 107 28-140 155-266 (284)
173 3tyt_A Heterogeneous nuclear r 99.7 6E-16 2E-20 124.5 11.0 77 52-138 3-80 (205)
174 3sde_A Paraspeckle component 1 99.7 6.1E-16 2.1E-20 128.5 11.1 102 28-140 76-181 (261)
175 2qfj_A FBP-interacting repress 99.6 5.3E-16 1.8E-20 124.3 10.0 83 52-139 27-109 (216)
176 2e5i_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 112.4 11.8 75 55-140 27-104 (124)
177 3beg_B Splicing factor, argini 99.6 2.9E-16 9.8E-21 115.0 7.4 78 51-140 14-96 (115)
178 3nmr_A Cugbp ELAV-like family 99.6 8.6E-16 3E-20 118.8 10.0 83 52-139 2-89 (175)
179 2hzc_A Splicing factor U2AF 65 99.6 9.8E-16 3.4E-20 106.0 8.9 71 52-134 5-86 (87)
180 2cjk_A Nuclear polyadenylated 99.6 6.3E-16 2.2E-20 119.0 8.6 82 52-140 2-83 (167)
181 2ghp_A U4/U6 snRNA-associated 99.6 5.8E-16 2E-20 130.0 8.9 106 28-138 177-291 (292)
182 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.2E-20 120.6 11.2 79 52-137 108-186 (193)
183 3pgw_A U1-A; protein-RNA compl 99.6 3.2E-15 1.1E-19 124.9 11.7 81 51-139 7-91 (282)
184 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4E-20 106.1 6.4 78 52-141 4-81 (88)
185 2bz2_A Negative elongation fac 99.6 3.5E-15 1.2E-19 110.3 9.2 78 51-141 37-114 (121)
186 3tyt_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 123.9 5.7 77 52-135 122-204 (205)
187 3u1l_A PRE-mRNA-splicing facto 99.6 3.2E-15 1.1E-19 122.7 9.5 79 50-139 131-230 (240)
188 2adc_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 120.6 10.0 81 48-138 29-110 (229)
189 2ghp_A U4/U6 snRNA-associated 99.6 2.6E-15 8.7E-20 126.1 8.4 101 29-141 99-200 (292)
190 1qm9_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 119.8 6.4 77 52-138 119-197 (198)
191 1fje_B Nucleolin RBD12, protei 99.6 1.7E-15 5.7E-20 117.7 4.4 84 50-140 10-93 (175)
192 2adc_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 117.0 10.3 77 52-138 150-228 (229)
193 1qm9_A Polypyrimidine tract-bi 99.5 9.4E-15 3.2E-19 115.8 7.5 77 52-138 2-79 (198)
194 3pgw_A U1-A; protein-RNA compl 99.5 3.1E-14 1E-18 118.9 10.9 75 52-136 206-281 (282)
195 1jmt_A Splicing factor U2AF 35 99.5 5.5E-15 1.9E-19 106.4 5.5 73 58-136 20-104 (104)
196 2dit_A HIV TAT specific factor 99.5 7.4E-14 2.5E-18 101.5 11.4 79 52-139 14-103 (112)
197 3v4m_A Splicing factor U2AF 65 99.5 1.6E-14 5.6E-19 104.1 7.8 83 52-139 4-98 (105)
198 3sde_A Paraspeckle component 1 99.5 4.5E-14 1.5E-18 117.2 11.4 77 51-138 20-96 (261)
199 3ue2_A Poly(U)-binding-splicin 99.5 4.6E-14 1.6E-18 103.8 9.3 86 52-138 19-109 (118)
200 2g4b_A Splicing factor U2AF 65 99.5 8.4E-14 2.9E-18 107.5 8.9 76 52-139 3-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.6E-18 109.3 9.3 76 52-139 3-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.6E-12 8.8E-17 91.7 7.7 66 63-140 27-92 (100)
203 3s6e_A RNA-binding protein 39; 99.3 9.7E-12 3.3E-16 90.8 10.1 81 52-141 6-96 (114)
204 3tht_A Alkylated DNA repair pr 99.3 4.7E-12 1.6E-16 109.0 9.3 75 51-136 16-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 6.5E-11 2.2E-15 82.1 8.1 73 52-138 6-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 1.1E-10 3.8E-15 85.7 8.9 75 51-136 16-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.0 4.9E-10 1.7E-14 90.4 7.6 74 65-139 141-214 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 1.7E-09 5.8E-14 75.4 7.1 72 52-137 14-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 7.9E-07 2.7E-11 63.3 10.0 73 51-134 19-96 (117)
210 1wey_A Calcipressin 1; structu 98.0 3.8E-05 1.3E-09 54.3 8.4 77 52-139 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.7 0.00092 3.2E-08 47.0 11.2 83 52-148 7-94 (104)
212 1uw4_A UPF3X; nonsense mediate 97.5 0.0008 2.7E-08 46.5 8.7 69 54-127 2-72 (91)
213 1whv_A Poly(A)-specific ribonu 97.2 0.0019 6.5E-08 44.9 8.0 56 52-121 15-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.1 0.0037 1.3E-07 45.2 9.2 72 52-136 23-95 (119)
215 2kn4_A Immunoglobulin G-bindin 96.9 0.00065 2.2E-08 51.1 3.5 36 82-124 2-37 (158)
216 3ctr_A Poly(A)-specific ribonu 96.8 0.0021 7.1E-08 44.8 5.3 55 53-121 6-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 96.7 0.0027 9.4E-08 56.3 6.7 56 52-118 52-107 (464)
218 3p3d_A Nucleoporin 53; structu 96.5 0.003 1E-07 46.3 4.6 84 52-138 6-99 (132)
219 2l08_A Regulator of nonsense t 95.9 0.0093 3.2E-07 41.5 4.4 71 53-127 9-80 (97)
220 2i2y_A Fusion protein consists 95.8 0.0017 5.7E-08 48.5 0.4 111 96-207 9-125 (150)
221 3d45_A Poly(A)-specific ribonu 89.8 1.2 4E-05 39.9 8.4 56 52-121 439-494 (507)
222 4f25_A Polyadenylate-binding p 87.3 0.029 1E-06 39.7 -3.1 43 27-69 62-113 (115)
223 2g0c_A ATP-dependent RNA helic 65.1 22 0.00076 22.4 6.1 68 55-136 2-75 (76)
224 3pgw_S U1-70K; protein-RNA com 58.9 0.008 2.8E-07 53.0 -15.4 53 161-213 106-165 (437)
225 4e8u_A Putative uncharacterize 56.4 31 0.0011 26.1 6.3 56 54-117 13-80 (172)
226 4eyt_A Telomerase associated p 30.0 1.3E+02 0.0043 20.2 8.1 81 52-145 11-98 (129)
227 2w7a_A LINE-1 ORF1P; RNA-bindi 27.0 1.5E+02 0.0051 20.2 5.4 34 100-133 62-98 (100)
228 3uzu_A Ribosomal RNA small sub 26.7 27 0.00093 28.3 1.8 35 54-88 115-149 (279)
229 3fut_A Dimethyladenosine trans 26.3 58 0.002 26.2 3.8 34 54-88 111-144 (271)
230 4bby_A Alkyldihydroxyacetoneph 21.4 86 0.0029 28.7 4.3 55 60-120 350-408 (658)
231 1igq_A Transcriptional repress 20.4 95 0.0033 19.2 3.0 22 82-109 21-42 (62)
232 1qyr_A KSGA, high level kasuga 20.0 87 0.003 24.7 3.6 34 54-87 91-124 (252)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=145.70 Aligned_cols=86 Identities=21% Similarity=0.443 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 47 KPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 47 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
+.....+++|||+|||+++|+++|+++|++||.|.+|.++.++. +|.++|||||+|.+.++|.+|++.|||..|+
T Consensus 13 en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 13 ENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-----AGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp ---CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----SCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-----CCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 33344678999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred CeEEEEEEeCC
Q 047513 127 EHILQVHLIPP 137 (221)
Q Consensus 127 gr~i~v~~a~~ 137 (221)
|+.|+|.+|+|
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 99999999987
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=140.39 Aligned_cols=88 Identities=19% Similarity=0.397 Sum_probs=79.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC-CceeCCeEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH-GYLLFEHIL 130 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~-g~~l~gr~i 130 (221)
+.+|||+|||+++|+++|+++|++|| .|.+|++++++. +|.++|||||+|.+.++|.+|++.++ +..++|+.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~-----t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-----SGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS-----SCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC-----CCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 46899999999999999999999999 799999999988 89999999999999999999998874 567999999
Q ss_pred EEEEeCCCccccccc
Q 047513 131 QVHLIPPEHVHLKLW 145 (221)
Q Consensus 131 ~v~~a~~~~~~~~~~ 145 (221)
+|.++.|+......|
T Consensus 76 ~V~~a~~~~~~~~DW 90 (91)
T 2lxi_A 76 SMHYSDPKPKINEDW 90 (91)
T ss_dssp EEECCCSCCCCSCSC
T ss_pred EEEEcCCCCCCCCCC
Confidence 999999887665444
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=140.39 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.++|||+|||+++++++|+++|++||.|.+|.++.++. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~-----tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR-----TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-----CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 678999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEeCCCccccccc
Q 047513 132 VHLIPPEHVHLKLW 145 (221)
Q Consensus 132 v~~a~~~~~~~~~~ 145 (221)
|.++.........+
T Consensus 80 V~~a~~~~~~~~~~ 93 (110)
T 3s8s_A 80 AQLDIKGQQRMKYY 93 (110)
T ss_dssp EEECSTTHHHHHHH
T ss_pred EEECCCCcHHHHHH
Confidence 99997765544433
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=129.92 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-----TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
+|.++.++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999765
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=3e-20 Score=127.92 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=78.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
+.+|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|..|+..|||..++|+.|+|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 36899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEeCCCc
Q 047513 133 HLIPPEH 139 (221)
Q Consensus 133 ~~a~~~~ 139 (221)
.++.++.
T Consensus 76 ~~a~~~~ 82 (83)
T 3md1_A 76 NWAAKLE 82 (83)
T ss_dssp EECCCCC
T ss_pred EecCcCC
Confidence 9998764
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=1e-19 Score=133.10 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|++.|||..|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-----TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34778999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccc
Q 047513 130 LQVHLIPPEHVHL 142 (221)
Q Consensus 130 i~v~~a~~~~~~~ 142 (221)
|+|.++.+.....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998876543
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=3.9e-20 Score=135.70 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-------~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-------CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45789999999999999999999999999999999984 45899999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.++...
T Consensus 77 V~~a~~~~~~ 86 (115)
T 4f25_A 77 VGRFKSRKER 86 (115)
T ss_dssp EEESSCCCC-
T ss_pred EEECCCcccc
Confidence 9999876543
No 8
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=5.2e-20 Score=130.47 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ-----TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 358999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.+....
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-20 Score=129.97 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-----TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT-----TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999887654
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=131.53 Aligned_cols=87 Identities=28% Similarity=0.475 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-----TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-----SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-----CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34679999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999887543
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=129.96 Aligned_cols=85 Identities=22% Similarity=0.496 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|++ |||..|+|+.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-----KQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-----TCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 4678999999999999999999999999999999999988 89999999999999999999997 99999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999887654
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.4e-20 Score=128.91 Aligned_cols=85 Identities=26% Similarity=0.523 Sum_probs=80.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD-----TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS-----SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC-----CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 678999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.++...
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 9999877543
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=132.04 Aligned_cols=87 Identities=22% Similarity=0.406 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-----TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34778999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 87 l~v~~a~~~~~~ 98 (105)
T 1x5u_A 87 IRVNKASAHNKN 98 (105)
T ss_dssp CEEEETTTTSCC
T ss_pred EEEEECCCCCcC
Confidence 999999887654
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.6e-20 Score=127.09 Aligned_cols=81 Identities=32% Similarity=0.518 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|..|++.|||..++|+.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT-----TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC-----CCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3678999999999999999999999999999999999977 89999999999999999999999999999999999
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
+|.+++
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999874
No 15
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=128.07 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-----SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3678999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEEeCC
Q 047513 131 QVHLIPP 137 (221)
Q Consensus 131 ~v~~a~~ 137 (221)
+|.++.+
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=132.01 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-----TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-----SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34679999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dnm_A 85 LRVQVARYGRRD 96 (103)
T ss_dssp CEEEECSSCCSC
T ss_pred EEEEECCcCCCC
Confidence 999999876543
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.2e-19 Score=132.69 Aligned_cols=85 Identities=25% Similarity=0.480 Sum_probs=80.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|+.||.|..|.++.++. ++.++|||||+|.+.++|..|++.|||..|.|+.|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-----TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-----SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 668999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.+....
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999887554
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=131.15 Aligned_cols=87 Identities=31% Similarity=0.509 Sum_probs=81.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|++.|||..|.|+.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS-----SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCcccc
Q 047513 131 QVHLIPPEHVHL 142 (221)
Q Consensus 131 ~v~~a~~~~~~~ 142 (221)
+|.++.+.....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998876543
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=129.96 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=80.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRL-RIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
++++|||+|||+++++++|+.+|++||.|..+ .++.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD-----TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT-----TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC-----CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 67899999999999999999999999999999 9999977 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99999887654
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3e-19 Score=127.38 Aligned_cols=84 Identities=23% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|++.|||..++|+.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 367899999999999999999999999999999999986 59999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.|...
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 21
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=132.67 Aligned_cols=81 Identities=11% Similarity=0.272 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCC--eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc----ee
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGT--IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY----LL 125 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~----~l 125 (221)
.=.+|||+|||+.+|+++|+++|++||. +.+|++++++. +|.++|||||+|.+.++|.+|++.|||. .+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~-----tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ-----TQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS-----SSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC-----CCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 3468999999999999999999999995 67999999998 8999999999999999999999999996 58
Q ss_pred CCeEEEEEEeCC
Q 047513 126 FEHILQVHLIPP 137 (221)
Q Consensus 126 ~gr~i~v~~a~~ 137 (221)
+|++|.|.+|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999864
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.3e-20 Score=132.21 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFG--TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+|||+|||+++++++|+++|++|| .|.++.++.++. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-----~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-----TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-----CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence 4799999999999999999999999 999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.|....
T Consensus 77 V~~~~~~~~~ 86 (90)
T 3p5t_L 77 VTPSNKLEHH 86 (90)
T ss_dssp ECCC------
T ss_pred EEECCCCccc
Confidence 9999876543
No 23
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.3e-20 Score=134.85 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCC------CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 52 KAAVLYIGRIRH------GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 52 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
.+++|||+|||+ ++++++|+++|++||.|..|.++.++. ||+++|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-----tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA-----TGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT-----TTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC-----CCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 468999999999 999999999999999999999999998 899999999999999999999999999999
Q ss_pred CC-eEEEEEEeCCC
Q 047513 126 FE-HILQVHLIPPE 138 (221)
Q Consensus 126 ~g-r~i~v~~a~~~ 138 (221)
.| +.|+|.++.|.
T Consensus 80 ~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 DLKHRLFLYTMKDV 93 (100)
T ss_dssp SSSCBCEEEESHHH
T ss_pred CCCeEEEEEECchh
Confidence 99 99999998764
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=131.36 Aligned_cols=83 Identities=18% Similarity=0.395 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++++|||+|||+.+++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-----CCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 668999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|.++.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99987654
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=127.14 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|++.|||..|+|+.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD-----TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS-----SCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3678999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
+|.+++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 26
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=128.77 Aligned_cols=83 Identities=19% Similarity=0.353 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR--------LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
+....++|||+|||+++++++|+++|++||.|.. +.++.++. +|.++|||||+|.+.++|..|++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----TGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-----TCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-----CCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3447789999999999999999999999999999 99999987 8999999999999999999999999
Q ss_pred CCceeCCeEEEEEEeC
Q 047513 121 HGYLLFEHILQVHLIP 136 (221)
Q Consensus 121 ~g~~l~gr~i~v~~a~ 136 (221)
||..++|+.|+|.+|.
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999874
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=130.14 Aligned_cols=87 Identities=21% Similarity=0.412 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE-----TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS-----SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34778999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 84 l~v~~a~~~~~~ 95 (102)
T 1x5s_A 84 IRVDQAGKSSDN 95 (102)
T ss_dssp CEEEEEECCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999877554
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.86 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=81.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC------Cce
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH------GYL 124 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~------g~~ 124 (221)
.+.++|||+|||+++++++|+.+|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|| |..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-----TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3678999999999999999999999999999999999988 89999999999999999999999999 999
Q ss_pred eCCeEEEEEEeCCCccc
Q 047513 125 LFEHILQVHLIPPEHVH 141 (221)
Q Consensus 125 l~gr~i~v~~a~~~~~~ 141 (221)
|+|+.|+|.++.+....
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999887554
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.06 Aligned_cols=87 Identities=23% Similarity=0.436 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeec-CcccccCCCCceeEEEEEECCHHHHHHHHHHh-CCceeCC
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARN-KKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM-HGYLLFE 127 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l-~g~~l~g 127 (221)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +. +|.++|||||+|.+.++|..|+..| ||..|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG-----TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS-----SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC-----CCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 347789999999999999999999999999999999998 66 7999999999999999999999999 9999999
Q ss_pred eEEEEEEeCCCccc
Q 047513 128 HILQVHLIPPEHVH 141 (221)
Q Consensus 128 r~i~v~~a~~~~~~ 141 (221)
+.|+|.++.+....
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999887554
No 30
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=126.50 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCC-ceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGK-SKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~-~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+++|||+|||+++++++|+++|++||.|..+.++.+.. ++. ++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM-----HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-----EEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC-----CCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 568999999999999999999999999999999999876 555 89999999999999999999999999999999
Q ss_pred EEEEeCCCc
Q 047513 131 QVHLIPPEH 139 (221)
Q Consensus 131 ~v~~a~~~~ 139 (221)
+|.++.|..
T Consensus 78 ~v~~a~~~~ 86 (88)
T 4a8x_A 78 TATAVLAPW 86 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999997754
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=130.02 Aligned_cols=85 Identities=26% Similarity=0.539 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...+++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|++.|||..|+|+.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----TGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT-----TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34678999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.++.
T Consensus 98 l~V~~a~~k~ 107 (108)
T 2jrs_A 98 MKVGHVTERT 107 (108)
T ss_dssp CEEECSCSSC
T ss_pred EEEEEcccCC
Confidence 9999998763
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.2e-19 Score=131.62 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----TGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT-----TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3668999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.+...
T Consensus 99 ~V~~a~~~~~ 108 (110)
T 1oo0_B 99 QVDWCFVKGP 108 (110)
T ss_dssp EEEESEESSC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.7e-19 Score=127.66 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+++++++|+++|++|| |..|.++.++. +|.++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD-----TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS-----SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC-----CCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 34678999999999999999999999997 99999999988 8999999999999999999999 99999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 999999887554
No 34
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-19 Score=129.43 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|.+|+..||+ .|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-----TGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS-----SCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC-----CCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 34678999999999999999999999999999999999988 899999999999999999999999998 899999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 88 l~V~~a~~~~~~ 99 (116)
T 2cqd_A 88 ANVNLAYLGAKP 99 (116)
T ss_dssp CEEEESTTTCCC
T ss_pred EEEEEcccCCCc
Confidence 999999765443
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.4e-19 Score=130.39 Aligned_cols=87 Identities=26% Similarity=0.422 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee---C
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL---F 126 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l---~ 126 (221)
....++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..+ .
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF-----TGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS-----SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 34778999999999999999999999999999999999988 899999999999999999999999999987 8
Q ss_pred CeEEEEEEeCCCccc
Q 047513 127 EHILQVHLIPPEHVH 141 (221)
Q Consensus 127 gr~i~v~~a~~~~~~ 141 (221)
|+.|+|.++.+....
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 999999999887543
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=128.77 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCC-CCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNT-GKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.+.++|||+|||+++++++|+++|+.|| |..|.++.++. + |.++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~-----~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS-----NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS-----CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC-----CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 4678999999999999999999999999 99999999987 6 899999999999999999999 99999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 86 l~V~~a~~~~~~ 97 (104)
T 1wi8_A 86 IRVDVADQAQDK 97 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999887654
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=128.28 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee-EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIK-RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...++|||+|||+++++++|+++|++||.|. .|.++.++. +|.++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-----TGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-----SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-----CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3678999999999999999999999999999 999999988 8999999999999999999999999999999999
Q ss_pred ----EEEEEeCCCcc
Q 047513 130 ----LQVHLIPPEHV 140 (221)
Q Consensus 130 ----i~v~~a~~~~~ 140 (221)
|+|.++.+...
T Consensus 82 ~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 82 PAKRFKLNYATYSGP 96 (99)
T ss_dssp SCEECCEEETTCCSS
T ss_pred cceeEEEeecCCCCC
Confidence 99999987643
No 38
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=4.6e-20 Score=139.19 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=84.9
Q ss_pred CccccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEE
Q 047513 25 DRKDAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGF 104 (221)
Q Consensus 25 ~~~~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~af 104 (221)
.+...+++....|+......+..+.....++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++||||
T Consensus 19 ~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----~g~~~G~af 93 (135)
T 2lea_A 19 SHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY-----TKESRGFAF 93 (135)
T ss_dssp ----------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS-----SSSCCSCCE
T ss_pred hhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCccceEEE
Confidence 344555555555554333333334445678999999999999999999999999999999999987 899999999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCccc
Q 047513 105 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 105 V~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~ 141 (221)
|+|.+.++|..|+..|||..|.|+.|+|.++.+....
T Consensus 94 V~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 94 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999876544
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=4.2e-19 Score=127.62 Aligned_cols=84 Identities=23% Similarity=0.420 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC---e
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE---H 128 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g---r 128 (221)
.+++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..+.| +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP------DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS------SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 67899999999999999999999999999999999987 58999999999999999999999999999988 9
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
.|+|.++.+....
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999887654
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=127.85 Aligned_cols=85 Identities=28% Similarity=0.488 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-------GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-------SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 347789999999999999999999999999999999987 4889999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|.|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2d9p_A 85 LYVALAQRKEER 96 (103)
T ss_dssp CEEEECSSCCCC
T ss_pred EEEEEecccccC
Confidence 999999887654
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=130.93 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIK--------RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
....++|||+|||+++++++|+++|++||.|. .|.++.++. +|.++|||||+|.+.++|..|+..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-----TGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-----TCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC-----CCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 34779999999999999999999999999998 699999977 89999999999999999999999999
Q ss_pred CceeCCeEEEEEEeCCCccc
Q 047513 122 GYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 122 g~~l~gr~i~v~~a~~~~~~ 141 (221)
|..|.|+.|+|.++.+....
T Consensus 87 g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TCEETTEECEEECSSCCCCS
T ss_pred CCccCCCEEEEEECCCCCCC
Confidence 99999999999999887553
No 42
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=133.85 Aligned_cols=88 Identities=20% Similarity=0.433 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-----TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-----TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 44678999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccc
Q 047513 130 LQVHLIPPEHVHL 142 (221)
Q Consensus 130 i~v~~a~~~~~~~ 142 (221)
|+|.++.+.....
T Consensus 114 l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 114 LKVALAASGHQRP 126 (139)
T ss_dssp EEEEESSCCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998876553
No 43
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.2e-19 Score=125.48 Aligned_cols=86 Identities=23% Similarity=0.420 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
.....++|||+|||+++++++|+++|++||.|..|.++.+.. .++|||||+|.+.++|..|+..|||..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 344779999999999999999999999999999999999853 3899999999999999999999999999999
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
.|+|.++.+....
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 84 KIEVNNATARVMT 96 (103)
T ss_dssp ECEEEECCSSCCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999887554
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.3e-19 Score=124.27 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~ 78 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-----SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIK 78 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-----SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-----CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEE
Confidence 357999999999999999999999999999999999987 8999999999999999999999 9999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++.+.
T Consensus 79 V~~a~~~ 85 (89)
T 3ucg_A 79 VIPKRTN 85 (89)
T ss_dssp EEETTTT
T ss_pred EEEccCC
Confidence 9998764
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=130.61 Aligned_cols=85 Identities=27% Similarity=0.482 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..+++|||+|||+++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR------TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST------TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 367899999999999999999999999999999999986 59999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 79 ~V~~a~~~~~~ 89 (116)
T 2fy1_A 79 KVEQAKKPSFQ 89 (116)
T ss_dssp EEEECCCSSCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=5.4e-19 Score=122.79 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|.+|++ +++..|+|+.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-----TGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----CCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 4778999999999999999999999999999999999988 89999999999999999999994 58899999999
Q ss_pred EEEEe
Q 047513 131 QVHLI 135 (221)
Q Consensus 131 ~v~~a 135 (221)
+|.+|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 47
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=138.77 Aligned_cols=83 Identities=16% Similarity=0.312 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG--TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..++|||+|||+++++++|+++|+.|| .|..|.++.++. +|+++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-----tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-----NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-----TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 568999999999999999999999999 999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.+..
T Consensus 129 l~V~~a~~~~ 138 (156)
T 3n9u_C 129 VDVRPATRQN 138 (156)
T ss_dssp CEEEECCHHH
T ss_pred eEEEEcCCCc
Confidence 9999987654
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-19 Score=125.94 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++. .++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3678999999999999999999999999999999999853 368999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999886544
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=6.3e-19 Score=129.41 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|++.|||..|+|+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ-----TSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS-----SSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----CCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44678999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|.+++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999873
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.8e-19 Score=134.88 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----SRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS-----SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34678999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.++.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999998765
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.7e-19 Score=124.81 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-------~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-------NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-------SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 36789999999999999999999999999999999885 68999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.+...
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-18 Score=126.06 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK------DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 367899999999999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2do0_A 87 HVKMDERALPK 97 (114)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999765443
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=125.16 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMH----AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
.+.++|||+|||+++++++|+ ++|++||.|.+|.++.++. + +|||||+|.+.++|..|++.|||..|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-----~---rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-----Y---QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-----T---TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-----C---CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 367899999999999999999 9999999999999999875 3 899999999999999999999999999
Q ss_pred CeEEEEEEeCCCcc
Q 047513 127 EHILQVHLIPPEHV 140 (221)
Q Consensus 127 gr~i~v~~a~~~~~ 140 (221)
|+.|+|.++.+...
T Consensus 79 gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 79 SKKILVSLATGASG 92 (96)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999987654
No 54
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=1.3e-19 Score=134.17 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+ .|||..|+|+.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-----SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-----TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 468999999999999999999999999999999999987 8999999999999999999999 8999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|.++.+..
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99987653
No 55
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=129.06 Aligned_cols=85 Identities=21% Similarity=0.394 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.++++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..+ |..|+|+.|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----TKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT-----TCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC-----CCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 4678999999999999999999999999999999999988 8999999999999999999999875 599999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.++...
T Consensus 97 ~V~~a~~~~~~ 107 (109)
T 2rs2_A 97 DPKVAFPRRAQ 107 (109)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=2.5e-19 Score=133.03 Aligned_cols=86 Identities=17% Similarity=0.362 Sum_probs=80.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
.|.++.+....
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99999876554
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=124.21 Aligned_cols=80 Identities=23% Similarity=0.480 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR------EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC------CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 66899999999999999999999999999999999987 488999999999999999999999999999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.++..
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 998753
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=127.08 Aligned_cols=85 Identities=22% Similarity=0.467 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+.. ||..|.|+.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-----TNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----SCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-----CCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3678999999999999999999999999999999999987 899999999999999999999988 9999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
.|.++.+....
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=1.1e-18 Score=125.75 Aligned_cols=81 Identities=19% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3477899999999999999999999999999999999987 5999999999999999999999999999999999
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999975
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=128.77 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|++.|||..|+|+.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-----TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-----TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-----CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 458999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.+....
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9999887654
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=126.80 Aligned_cols=86 Identities=17% Similarity=0.361 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce-eCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQ-FGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL-LFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~-l~gr 128 (221)
...++|||+|||+++++++|+++|+. ||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||.. |+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ------TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT------TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC------CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 46789999999999999999999999 9999999999987 58999999999999999999999999999 9999
Q ss_pred EEEEEEeCCCcccc
Q 047513 129 ILQVHLIPPEHVHL 142 (221)
Q Consensus 129 ~i~v~~a~~~~~~~ 142 (221)
.|+|.++.+.....
T Consensus 81 ~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 81 PVRLSVAIPKASRV 94 (104)
T ss_dssp CCCCCBCCCCCSCC
T ss_pred eEEEEEccCCCcCC
Confidence 99999998776543
No 62
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=121.71 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|+.| .|..|.++.+ . +|+++|||||+|.+.++|..|+. |||..|+|+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~-----~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-A-----HGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-T-----TSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-C-----CCCCceEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 3467899999999999999999999999 9999999998 4 79999999999999999999998 9999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.+..
T Consensus 79 i~v~~a~~~~ 88 (91)
T 2dgw_A 79 IEVFREKSGP 88 (91)
T ss_dssp EEEEEESSCC
T ss_pred EEEEECCcCC
Confidence 9999998764
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-19 Score=124.44 Aligned_cols=88 Identities=25% Similarity=0.390 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.++|||+|||+++++++|+++|++||.|..|.++.++.. ..++.++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK--AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT--TCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 6789999999999999999999999999999999887530 00237899999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.+....
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=125.70 Aligned_cols=82 Identities=10% Similarity=0.126 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+++++|+++|+.||.|..+.++.++. +|.++|||||+|.+.++|..|++.|||..|+|+.|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-----SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-----CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 568999999999999999999999999998888888877 899999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998654
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=1.6e-18 Score=133.46 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=81.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-----KKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3678999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 112 ~V~~a~~~~~~ 122 (156)
T 1h2v_Z 112 RTDWDAGFKEG 122 (156)
T ss_dssp EEEEESCCCTT
T ss_pred EEEECCCCCCc
Confidence 99999876554
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-18 Score=123.29 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.++. +|.++|||||+|.+.++|..|+. ++..|+|+.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-----TGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-----SCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999997 5789999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
.|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999887554
No 67
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=128.11 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||.++++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-------RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-------TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-------CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4477899999999999999999999999999999999884 448999999999999999999999999999999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|+|.++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999875
No 68
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.3e-19 Score=125.85 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+++|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT-----TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC-----CCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 568999999999999999999999999999888888877 899999999999999999999999999999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.++..
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998753
No 69
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.3e-18 Score=134.06 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY-----TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS-----CTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-----CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3578999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 143 ~v~~a~~~~~~ 153 (158)
T 2kn4_A 143 RVQMARYGRPP 153 (158)
T ss_dssp EEEEECCSSCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=124.38 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|..|++.||+..|.|+.|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 36789999999999999999999999999999998653 5588999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999887543
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.5e-19 Score=121.07 Aligned_cols=75 Identities=19% Similarity=0.465 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 134 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~ 134 (221)
+|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT-----TNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS-----STTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 589999999999999999999999999999999987 89999999999999999999996 999999999999987
Q ss_pred e
Q 047513 135 I 135 (221)
Q Consensus 135 a 135 (221)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=127.60 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++|+++|+++|++||.|.+|.++.++ .|.++|||||+|.+.++|..|+. +||..|+|+.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~------~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC------TTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC------CCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 56899999999999999999999999999999999987 48999999999999999999997 899999999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.++..
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 998654
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=128.21 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecC-cccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNK-KLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
....++|||+|||+++++++|+++|+.|| |..|.++.++ . +|+++|||||+|.+.++|..|+ .|||..|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN-----PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT-----TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc-----CCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 34779999999999999999999999999 9999999987 5 7999999999999999999999 9999999999
Q ss_pred EEEEEEeCCCc
Q 047513 129 ILQVHLIPPEH 139 (221)
Q Consensus 129 ~i~v~~a~~~~ 139 (221)
.|+|.++.++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998753
No 74
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=125.76 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 52 KAAVLYIGRIRHGF------YEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 52 ~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
.+++|||+|||+.+ ++++|+.+|++||.|..|.++. . +|.++|||||+|.+.++|..|+..|||..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~-----~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E-----DGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--B-----TTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--C-----CCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 56899999999999 8899999999999999999883 4 799999999999999999999999999999
Q ss_pred CCe-EEEEEEeCCC
Q 047513 126 FEH-ILQVHLIPPE 138 (221)
Q Consensus 126 ~gr-~i~v~~a~~~ 138 (221)
+|+ .|+|.++...
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999998654
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=8.1e-18 Score=124.63 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...+++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS------SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC------CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3467899999999999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 106 l~V~~a~~~~~~ 117 (124)
T 2kt5_A 106 MDIQLVASQIDL 117 (124)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEEeCCCCCC
Confidence 999999876554
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=128.75 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+ .|||..|+|+.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-----SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC-----SSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC-----CCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 558999999999999999999999999999999999988 8999999999999999999999 9999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 98 V~~a~~~~~ 106 (114)
T 2cq4_A 98 VQASQAEKN 106 (114)
T ss_dssp EEEHHHHHH
T ss_pred EEecCCCcc
Confidence 999876543
No 77
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=127.56 Aligned_cols=84 Identities=15% Similarity=0.332 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+.+|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+.. ||..|+|+.|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-----SKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT-----TSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----CCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 568999999999999999999999999999999999987 899999999999999999999977 99999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.++...
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 9999887654
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.6e-18 Score=134.82 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+.+|++||.|..|.++.++. +|.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----TGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-----CCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3568999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
.|.++.+....
T Consensus 145 ~V~~a~~~~~~ 155 (165)
T 1rk8_A 145 QVDWCFVKGPK 155 (165)
T ss_dssp EEEESEECC--
T ss_pred EEEEecCCCCC
Confidence 99999776543
No 79
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=132.84 Aligned_cols=84 Identities=11% Similarity=0.230 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc----e
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR--LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY----L 124 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~----~ 124 (221)
...++|||+|||+++++++|+++|++||.|.. |+++.++. +|+++|||||+|.+. +|..|+..|||. .
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-----tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-----TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-----SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-----CCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 36689999999999999999999999999966 99999998 899999999999999 999999999999 9
Q ss_pred eCCeEEEEEEeCCCcc
Q 047513 125 LFEHILQVHLIPPEHV 140 (221)
Q Consensus 125 l~gr~i~v~~a~~~~~ 140 (221)
++|+.|+|.++.+...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999988644
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.6e-19 Score=126.82 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEe-ecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC--CceeCC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGT-IKRLRIA-RNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH--GYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~--g~~l~g 127 (221)
+.++|||+|||+++++++|+++|+.||. |..|.++ .+.. +|.++|||||+|.+.++|..|+..|| +..+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD-----KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT-----TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC-----CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 6789999999999999999999999998 9999998 7776 78999999999999999999999996 589999
Q ss_pred eEEEEEEeCCCccc
Q 047513 128 HILQVHLIPPEHVH 141 (221)
Q Consensus 128 r~i~v~~a~~~~~~ 141 (221)
+.|+|.++.+....
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999999887653
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.4e-19 Score=126.56 Aligned_cols=82 Identities=20% Similarity=0.416 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.+ |..|+..|||..++|+.|+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE-----TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS-----SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC-----CCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 5899999999999999999999999999999999988 8999999999999999 999999999999999999999
Q ss_pred EeCCCccc
Q 047513 134 LIPPEHVH 141 (221)
Q Consensus 134 ~a~~~~~~ 141 (221)
+|.+....
T Consensus 76 ~a~~~~~~ 83 (90)
T 2ki2_A 76 EANPKKSL 83 (90)
T ss_dssp EC------
T ss_pred EcCCCCCC
Confidence 99876543
No 82
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-19 Score=129.32 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+.+|+.||.|.. .++.+.. +|.++|||||+|.+.++|..|++ |||..|.|+.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~-----~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR-----TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE-----EETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC-----CCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 346789999999999999999999999999877 5666666 78999999999999999999998 9999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.++...
T Consensus 87 l~V~~a~~~~~~ 98 (101)
T 1fj7_A 87 IKLEKPKGRDGT 98 (101)
T ss_dssp CEEECCSCCCCS
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-19 Score=124.80 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.++++|||+|||+++++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-----TNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-----SCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 3678999999999999999999999999999999999987 89999999999999999999999999999999998
Q ss_pred EEEEe
Q 047513 131 QVHLI 135 (221)
Q Consensus 131 ~v~~a 135 (221)
++.+.
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 87654
No 84
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=123.54 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee-----
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL----- 125 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l----- 125 (221)
...++|||+|||+++++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS------SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS------SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 367899999999999999999999999999999999986 589999999999999999999999999999
Q ss_pred ---CCeEEEEEEeCCC
Q 047513 126 ---FEHILQVHLIPPE 138 (221)
Q Consensus 126 ---~gr~i~v~~a~~~ 138 (221)
.+++|.|.++.|.
T Consensus 97 ~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCCCSSCBEEEECCCS
T ss_pred ccCCCCceeEEccCCC
Confidence 5788999999865
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-19 Score=127.43 Aligned_cols=83 Identities=12% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCcHHHHH---HHHhccCCeeEEEEeecCcccccCCC---CceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 52 KAAVLYIGRIRHGFYEKEMH---AFFSQFGTIKRLRIARNKKLRVLNTG---KSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~~~~~tg---~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
..++|||+|||+++++++|+ ++|++||.|..|.++.+.. ++ .++|||||+|.+.++|..|++.|||..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~-----~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS-----YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS-----CCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC-----cCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 56799999999999999999 9999999999999998865 44 5669999999999999999999999999
Q ss_pred CCeEEEEEEeCCCc
Q 047513 126 FEHILQVHLIPPEH 139 (221)
Q Consensus 126 ~gr~i~v~~a~~~~ 139 (221)
+|+.|+|.++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998875
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=129.64 Aligned_cols=81 Identities=32% Similarity=0.520 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT-----TCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC-----CCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34778999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEe
Q 047513 130 LQVHLI 135 (221)
Q Consensus 130 i~v~~a 135 (221)
|+|.+|
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=120.39 Aligned_cols=76 Identities=22% Similarity=0.414 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
++|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|..|+..++ ..++|+.|+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----TKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC-----SSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC-----CCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEE
Confidence 5799999999999999999999999999999999987 89999999999999999999999999 99999999999
Q ss_pred Ee
Q 047513 134 LI 135 (221)
Q Consensus 134 ~a 135 (221)
+|
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.3e-18 Score=131.34 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=92.4
Q ss_pred ccCCccccCCCCCCCCCCC---CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEE
Q 047513 28 DAADFLPLEGGPGRKLPEE---KPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGF 104 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~af 104 (221)
..+++..+.|++++..+.. .......++|||+|||+.+++++|+++|+.||.|..+.++.++. +|.++||||
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~af 133 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----TGSSRGYGF 133 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----TCCEEEEEE
T ss_pred HHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC-----CCCcceEEE
Confidence 4678888888877653332 23345678999999999999999999999999999999999987 899999999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeEEEEEEeCC
Q 047513 105 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 137 (221)
Q Consensus 105 V~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~ 137 (221)
|+|.+.++|.+|+..|||..++|+.|+|.+|.+
T Consensus 134 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 134 VSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999864
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=124.91 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g--~~l~gr~ 129 (221)
+.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.|++ ..|.|++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 6789999999999999999999999999999999875 48999999999999999998864 7899999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.++...
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999887654
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=123.87 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR-LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
....++|||+|||+++++++|+++|++||.|.. |.++.+ . +|+++|||||+|.+.++|..|+.. |+..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~-----~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-F-----QGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-S-----SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-C-----CCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 346789999999999999999999999999987 888888 4 799999999999999999999976 99999999
Q ss_pred EEEEEEeCCCcc
Q 047513 129 ILQVHLIPPEHV 140 (221)
Q Consensus 129 ~i~v~~a~~~~~ 140 (221)
.|+|.++.+...
T Consensus 85 ~i~v~~~~~~~~ 96 (104)
T 1wg5_A 85 YIEIFKSSRAEV 96 (104)
T ss_dssp CCEEEEECTTTS
T ss_pred EEEEEECCHHHH
Confidence 999999876643
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=121.76 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce--eC
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL--LF 126 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~--l~ 126 (221)
...++++|||+|||+++|+++|+++|++||.|.++.+++. +|||||+|.+.++|..|++.|||.. +.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------KRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 3447789999999999999999999999999999988754 4799999999999999999999875 78
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
|++|.|.+++++.
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998764
No 92
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=128.51 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 52 KAAVLYIGRIRHGFYEKEMH----AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|..|+..|||..|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 56899999999999999866 6999999999987753 57889999999999999999999999999999
Q ss_pred eEEEEEEeCCCcc
Q 047513 128 HILQVHLIPPEHV 140 (221)
Q Consensus 128 r~i~v~~a~~~~~ 140 (221)
++|+|.++.+...
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987654
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-19 Score=130.62 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
+....++|||+|||+++++++|+.+|+.||.|..+.++.+.. +|+++|||||+|.+.++|..||. |||..|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-----~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-----NGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-----TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-----CCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 344678999999999999999999999999998866666655 89999999999999999999998 999999999
Q ss_pred EEEEEEeCCCc
Q 047513 129 ILQVHLIPPEH 139 (221)
Q Consensus 129 ~i~v~~a~~~~ 139 (221)
.|.|.++.+..
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999987543
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=120.55 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++++++|+++|++||.| .++.+ . ++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-Q-----NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-S-----SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-C-----CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 367999999999999999999999999987 55665 3 79999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.+...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999988754
No 95
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=121.49 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 48 PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
......++|||+|||+.+++++|+++|++||.|..+ .. +|.++|||||+|.+.++|..|+..|||..++|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ-----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EE-----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 334467899999999999999999999999988765 22 68899999999999999999999999999999
Q ss_pred eEEEEEEeCCCcc
Q 047513 128 HILQVHLIPPEHV 140 (221)
Q Consensus 128 r~i~v~~a~~~~~ 140 (221)
+.|+|.++.+...
T Consensus 81 ~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 RSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEECSSSCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987654
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=127.15 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|+.||.|..+.+..+.. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3678999999999999999999999999985443333323 58889999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=120.25 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 53 AAVLYIGRIRHGF------YEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 53 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
+++|||+|||+.+ ++++|+++|++||.|..|.++. . +|.++|||||+|.+.++|..|+..|||..++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~-----~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E-----DGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--B-----TTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--C-----CCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 3789999999999 7899999999999999999873 4 7999999999999999999999999999999
Q ss_pred Ce-EEEE
Q 047513 127 EH-ILQV 132 (221)
Q Consensus 127 gr-~i~v 132 (221)
|+ .|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8876
No 98
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=4.2e-18 Score=131.93 Aligned_cols=103 Identities=21% Similarity=0.358 Sum_probs=91.5
Q ss_pred cCCccccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEE
Q 047513 29 AADFLPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEF 107 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f 107 (221)
.+|+..+.|++++...... .+....++|||+|||+.+++++|+++|++||.|..+.++.++. +|.++|||||+|
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~g~~~g~afV~f 143 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----TGLSKGYAFCEY 143 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----TCSEEEEEEEEE
T ss_pred HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC-----CCCcceEEEEEe
Confidence 6788888998777644332 2334578999999999999999999999999999999999987 899999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEEeC
Q 047513 108 NDPEVAEVVADAMHGYLLFEHILQVHLIP 136 (221)
Q Consensus 108 ~~~~~a~~al~~l~g~~l~gr~i~v~~a~ 136 (221)
.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999873
No 99
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.7e-18 Score=122.53 Aligned_cols=82 Identities=20% Similarity=0.430 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMH----AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
.++++|||+|||+++++++|+ .+|++||.|..|.++. +|.++|||||+|.+.++|..|+..|||..++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--------SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--------HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 367899999999999999999 9999999999998873 4778899999999999999999999999999
Q ss_pred CeEEEEEEeCCCcc
Q 047513 127 EHILQVHLIPPEHV 140 (221)
Q Consensus 127 gr~i~v~~a~~~~~ 140 (221)
|+.|+|.++.+...
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999987654
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=3.7e-18 Score=124.71 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..+++|||+|||+.+++++|+.+|+.||.|..|.++.+ +.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 36789999999999999999999999999999999875 4458999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.+...
T Consensus 78 ~v~~a~~~~~ 87 (115)
T 3lqv_A 78 VVLYYNANRA 87 (115)
T ss_dssp EEEECCHHHH
T ss_pred EEEEecCChh
Confidence 9999976543
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=5.4e-18 Score=124.83 Aligned_cols=82 Identities=9% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGT---IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
...++|||+|||+++|+++|+++|+.||. |..|.++.++ .|+++|||||+|.+.++|.+|+. |||..|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~------~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR------EGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS------SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC------CCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 46789999999999999999999999999 8999999987 49999999999999999999997 99999999
Q ss_pred eEEEEEEeCCCc
Q 047513 128 HILQVHLIPPEH 139 (221)
Q Consensus 128 r~i~v~~a~~~~ 139 (221)
+.|+|.++.+..
T Consensus 88 r~i~V~~a~~~~ 99 (118)
T 2db1_A 88 RYIEVFKSHRTE 99 (118)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999987654
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=119.42 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|+.|+ .|.++.++. ++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE-----TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS-----SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC-----CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34778999999999999999999999874 677888877 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999887654
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=124.96 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG--YLLFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g--~~l~gr 128 (221)
.++++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.|++ ..|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 36789999999999999999999999999999998875 48999999999999999998884 689999
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
.|+|.++.++...
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999887665
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=125.37 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTI-KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.+.++|||+|||+++++++|+++|+.||.| ..|.|+.++ +|+++|||||+|.+.++|..|+.. ||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~------~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN------NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT------TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC------CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 367899999999999999999999999999 889999987 599999999999999999999976 999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|.|.++.+....
T Consensus 86 i~v~~a~~~~~~ 97 (114)
T 2cpy_A 86 AFVHVVTLEDMR 97 (114)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999876543
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=119.47 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh--CCceeCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM--HGYLLFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l--~g~~l~gr 128 (221)
.++++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.| ++..+.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 36789999999999999999999999999999988764 489999999999999999976 56789999
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
+|.|.++.++...
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999999877654
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.8e-18 Score=130.58 Aligned_cols=84 Identities=8% Similarity=0.115 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 49 LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGT---IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
+....++|||+|||+++|+++|+++|++||. |..|.++.++ .|+++|||||+|.+.++|.+|+. |||..|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~------~g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR------EGRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS------SSCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC------CCCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 3446789999999999999999999999999 8899999987 49999999999999999999998 999999
Q ss_pred CCeEEEEEEeCCCc
Q 047513 126 FEHILQVHLIPPEH 139 (221)
Q Consensus 126 ~gr~i~v~~a~~~~ 139 (221)
+|+.|+|.++.+..
T Consensus 113 ~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 113 GHRYIEVFKSHRTE 126 (136)
T ss_dssp SSSEEEEEECCHHH
T ss_pred CCEEEEEEECChHH
Confidence 99999999986543
No 107
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=121.87 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++|+++|+++|+.||. ..|.|+.++ +|+++|||||+|.+.++|.+|+ .+|+..|+|+.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~------~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP------DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS------SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC------CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEE
Confidence 6689999999999999999999999995 499999986 6999999999999999999999 5899999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 86 V~~~~~~~~ 94 (102)
T 1wez_A 86 LFLNSTAGT 94 (102)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 999887654
No 108
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.9e-17 Score=121.58 Aligned_cols=79 Identities=11% Similarity=0.224 Sum_probs=71.3
Q ss_pred CcEEEEcCC----CCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECC----HHH----HHHHHH--
Q 047513 53 AAVLYIGRI----RHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFND----PEV----AEVVAD-- 118 (221)
Q Consensus 53 ~~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~----~~~----a~~al~-- 118 (221)
++.|||+|| |+.+++.+|+.+|++||+|.+|.++.|+. ||+++|||||+|.+ ++. |.+|+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-----Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-----SALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-----TCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 368999999 99999999999999999999999999999 99999999999996 333 788888
Q ss_pred HhCCceeCCeEEEEEEeC
Q 047513 119 AMHGYLLFEHILQVHLIP 136 (221)
Q Consensus 119 ~l~g~~l~gr~i~v~~a~ 136 (221)
.|||..|+|+.|+|.+-.
T Consensus 77 ~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp TTTCEEETTEEEEEEECC
T ss_pred hhcCCeecCcEEEEEECc
Confidence 789999999999999743
No 109
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.8e-18 Score=116.89 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|..|++.|||..++|+.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 457899999999999999999999999999998855 369999999999999999999999999999999
Q ss_pred EEEeC
Q 047513 132 VHLIP 136 (221)
Q Consensus 132 v~~a~ 136 (221)
|.+|.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99984
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=121.59 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc--eeCCe
Q 047513 52 KAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY--LLFEH 128 (221)
Q Consensus 52 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~--~l~gr 128 (221)
++++|||+|||+ ++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.||+. .|.|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 678999999999 9999999999999999999999765 379999999999999999998864 59999
Q ss_pred EEEEEEeCCCc
Q 047513 129 ILQVHLIPPEH 139 (221)
Q Consensus 129 ~i~v~~a~~~~ 139 (221)
+|+|.++.+..
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 1x4d_A 83 PVRVHLSQKYK 93 (102)
T ss_dssp ECEEEEECCCT
T ss_pred EEEEEECCCCC
Confidence 99999998643
No 111
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.6e-18 Score=139.90 Aligned_cols=107 Identities=23% Similarity=0.393 Sum_probs=91.1
Q ss_pred ccCCccccCCCCCCCCCCCCC---CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEE
Q 047513 28 DAADFLPLEGGPGRKLPEEKP---LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGF 104 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~~---~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~af 104 (221)
..+++..+.|++++....... .....++|||+|||+.+++++|+++|+.||.|..|.++.+. +.++||||
T Consensus 75 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-------~~~~g~~f 147 (213)
T 4f02_A 75 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------NGSKGYGF 147 (213)
T ss_dssp HHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------TEEEEEEE
T ss_pred HHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-------CCCceEEE
Confidence 456788888887775443321 22356799999999999999999999999999999999984 45799999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCccc
Q 047513 105 IEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 105 V~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~ 141 (221)
|+|.+.++|.+|++.|||..|+|+.|+|.++.++...
T Consensus 148 V~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 148 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCccc
Confidence 9999999999999999999999999999999886544
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.5e-18 Score=139.87 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG--TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++. +|+++|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-----tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-----TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-----CCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 567899999999999999999999999 999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.+..
T Consensus 142 l~V~~a~~~~ 151 (229)
T 3q2s_C 142 PVVTPVNKQF 151 (229)
T ss_dssp CEEEECCHHH
T ss_pred eEEEECCCCc
Confidence 9999987643
No 113
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=9.8e-18 Score=132.69 Aligned_cols=85 Identities=22% Similarity=0.421 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT-----TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC-----CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4668999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.|...
T Consensus 187 ~v~~a~~~~~ 196 (198)
T 2yh0_A 187 LVQRASVGAK 196 (198)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988643
No 114
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.3e-18 Score=117.40 Aligned_cols=75 Identities=17% Similarity=0.384 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 134 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~ 134 (221)
+|||+|||+++++++|+++|++||.|..+.++.++. +|.++|||||+|.+.++|..|+. +++..++|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-----TNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-----CSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 589999999999999999999999999999999987 89999999999999999999996 599999999999987
Q ss_pred e
Q 047513 135 I 135 (221)
Q Consensus 135 a 135 (221)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-17 Score=118.54 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC---
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE--- 127 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g--- 127 (221)
...++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|..|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 46789999999999999999999999999999998764 799999999999999999999999999
Q ss_pred --eEEEEEEeCCCccc
Q 047513 128 --HILQVHLIPPEHVH 141 (221)
Q Consensus 128 --r~i~v~~a~~~~~~ 141 (221)
+.|+|.++.+....
T Consensus 81 ~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSPS 96 (108)
T ss_dssp CEEEEEEEESSCCSCC
T ss_pred cceEEEEEeCCCCCCC
Confidence 99999999886543
No 116
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.9e-17 Score=133.53 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++|+++|+++|++||.|.+|.|++++. +|+++|||||+|.+.++|..|+..+|+..+.|+.|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-----TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC-----CCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 3668999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
++.++.+...
T Consensus 88 ~~~~~~~~~~ 97 (213)
T 4f02_A 88 RIMWSQRDPS 97 (213)
T ss_dssp EEEECCCCTH
T ss_pred cccccccccc
Confidence 9999876543
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=4.4e-17 Score=116.78 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
+.++|||+|||+++++++|+++|++||.|..|.+++ |||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 568999999999999999999999999999998753 5999999999999999999999999999999
Q ss_pred EEEeCCCcccccccc
Q 047513 132 VHLIPPEHVHLKLWR 146 (221)
Q Consensus 132 v~~a~~~~~~~~~~~ 146 (221)
|.++.+.........
T Consensus 77 v~~a~~~~~~~~~~~ 91 (103)
T 2dgu_A 77 IVFAKPPDQKRKERK 91 (103)
T ss_dssp EEECCCCCCCCCCCC
T ss_pred EEEcCCCcccchhhh
Confidence 999988766544433
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=115.03 Aligned_cols=78 Identities=12% Similarity=0.309 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++++++|+.+|++||.|..|.+++ +||||+|.+.++|..|+..|||..++|+.|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------------DYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------------SCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3778999999999999999999999999999998863 499999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 74 ~v~~a~~~~~~ 84 (90)
T 2dnp_A 74 NVELSTKGQKK 84 (90)
T ss_dssp EEEESCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999887543
No 119
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-17 Score=116.00 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC--CeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF--EHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~--gr~ 129 (221)
+.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|||..+. |+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 6689999999999999999999999999999988653 579999999999999999999999999 999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=114.18 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|..|+..|||..|.|+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------------DYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------------SEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34678999999999999999999999999999998863 49999999999999999999999999999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|+|.++.+....
T Consensus 74 l~V~~a~~~~~~ 85 (92)
T 2dgt_A 74 MHVQLSTSRLRT 85 (92)
T ss_dssp EEEEESSCCCSC
T ss_pred EEEEEccCCCCC
Confidence 999999877543
No 121
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=125.11 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGT---IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
....++|||+|||+++|+++|+++|+.||. |..|.++.++ .|+++|||||+|.+.++|..|+. +||..++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~------~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR------DGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT------TSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC------CCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 347789999999999999999999999998 8999999987 48999999999999999999998 9999999
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
|+.|+|.++.+..
T Consensus 81 gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 81 QRYVEVYEINNED 93 (107)
T ss_dssp SSCCCCEECCHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999987654
No 122
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-19 Score=132.00 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=80.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR--------LRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
.+.++|||+|||+++++++|+++|++||.|.. |.++.++. +|.++|||||+|.+.++|..|+..|||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----TGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 36789999999999999999999999999998 88999877 899999999999999999999999999
Q ss_pred ceeCCeEEEEEEeCCCcccc
Q 047513 123 YLLFEHILQVHLIPPEHVHL 142 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~~~~~~ 142 (221)
..|.|+.|+|.++.++....
T Consensus 80 ~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRADFN 99 (116)
Confidence 99999999999998876543
No 123
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=2e-18 Score=132.01 Aligned_cols=80 Identities=25% Similarity=0.448 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 346789999999999999999999999999999999775 3589999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.+..
T Consensus 140 l~v~~a~~~~ 149 (150)
T 2i2y_A 140 VRVELSNGEK 149 (150)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998763
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=122.13 Aligned_cols=79 Identities=11% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|+.| .|..|.|+.++ .|+++|||||+|.+.++|.+|+ .+||..|+|+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~------~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH------VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT------TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC------CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 45799999999999999999999999 89999999986 5999999999999999999999 7999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|..+.+.
T Consensus 87 V~~a~~~ 93 (109)
T 2dnn_A 87 VSPATER 93 (109)
T ss_dssp EEECCHH
T ss_pred EEECCcc
Confidence 9988653
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=113.54 Aligned_cols=75 Identities=24% Similarity=0.460 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh-CCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l-~g~~l~gr~ 129 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..| ||..++|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 36789999999999999999999999999999998764 479999999999999999989 999999999
Q ss_pred EEEEEeC
Q 047513 130 LQVHLIP 136 (221)
Q Consensus 130 i~v~~a~ 136 (221)
|+|.+++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999874
No 126
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=3.9e-17 Score=125.43 Aligned_cols=83 Identities=24% Similarity=0.502 Sum_probs=79.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 132 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v 132 (221)
.++|||+|||+++++++|+++|+.||.|..+.++.++. +|.++|||||+|.+.++|..|++.|||..+.|+.|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-----TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 58999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEeCCCcc
Q 047513 133 HLIPPEHV 140 (221)
Q Consensus 133 ~~a~~~~~ 140 (221)
.++.+...
T Consensus 77 ~~~~~~~~ 84 (167)
T 1fxl_A 77 SYARPSSA 84 (167)
T ss_dssp EECCCCCG
T ss_pred EecCCCcc
Confidence 99987654
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=114.39 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 367899999999999999999999999999999886 2699999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 73 ~v~~a~~~~~~ 83 (90)
T 2dnq_A 73 NVEASKNKSKA 83 (90)
T ss_dssp EEECSSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999887554
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=117.75 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3678999999999999999999999999996 555543 467999999999999999999999999999999
Q ss_pred EEEEeCCCc
Q 047513 131 QVHLIPPEH 139 (221)
Q Consensus 131 ~v~~a~~~~ 139 (221)
+|.++.+..
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.5e-17 Score=121.37 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|..|++.|||..|+|+.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 668999999999999999999999999 899988743 3467999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
+|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998643
No 130
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2.3e-17 Score=132.21 Aligned_cols=108 Identities=20% Similarity=0.342 Sum_probs=93.2
Q ss_pred ccCCccccCCCCCCCCCCCCC------------CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccC
Q 047513 28 DAADFLPLEGGPGRKLPEEKP------------LVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLN 95 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~~------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~ 95 (221)
+.+++..+.|+++++...... .....++|||+|||..+++++|+++|+.||.|..|.++.++.
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~----- 162 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT----- 162 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT-----
T ss_pred HHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC-----
Confidence 357888888888776443321 124568999999999999999999999999999999999987
Q ss_pred CCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 96 TGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 96 tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.+...
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 899999999999999999999999999999999999999987643
No 131
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=118.77 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 36789999999999999999999999999999998775 4799999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 92 ~v~~a~~~~~~ 102 (109)
T 1x4g_A 92 KCYWGKESPDM 102 (109)
T ss_dssp EEECCCCCCSS
T ss_pred EEEecCCCCCC
Confidence 99999887543
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=117.20 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+.++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|..|++.|||..|.|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 36789999999999999999999999999999988754 4799999999999999999999999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
+|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=125.80 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE--------EEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRL--------RIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
.+.++|||+|||+.+|+++|+.+|+.||.|..+ .+. . +|.++|||||+|.+.++|..|+..|||
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~-----~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---K-----EGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---E-----ETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---c-----CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 367899999999999999999999999998764 222 2 688999999999999999999999999
Q ss_pred ceeCCeEEEEEEeCCCccc
Q 047513 123 YLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~~~~~ 141 (221)
..|.|+.|.|.++.+....
T Consensus 115 ~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 115 YVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp BEETTEECEEEECCCSCC-
T ss_pred CEeCCcEEEEEECCCCCCc
Confidence 9999999999999876543
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=118.55 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc--eeCCeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY--LLFEHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~--~l~gr~ 129 (221)
+.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|++. .+.|++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 6689999999999999999999999999999988654 489999999999999999988764 599999
Q ss_pred EEEEEeCCCccc
Q 047513 130 LQVHLIPPEHVH 141 (221)
Q Consensus 130 i~v~~a~~~~~~ 141 (221)
|.|.++.++...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876554
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.6e-17 Score=126.77 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++++|||+|||+++++++|+++|+.||.|..|.++.++. +|.++|||||+|.+.++|..|+..|||..++|+.|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-----TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-----TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC-----CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 568999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 77 v~~~~~~~~ 85 (168)
T 1b7f_A 77 VSYARPGGE 85 (168)
T ss_dssp EEECCCCSS
T ss_pred EEecCCCcc
Confidence 999987654
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=116.69 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRL-RIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
..+++|||+|||+++++++|+.+|++||.|..| .++.++. + |.|||+|.+.++|..|+..|||..|+|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-----~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-----T----AVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-----S----EEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-----C----CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 357899999999999999999999999999999 4888765 3 34999999999999999999999999999
Q ss_pred EEEEEeCCCc
Q 047513 130 LQVHLIPPEH 139 (221)
Q Consensus 130 i~v~~a~~~~ 139 (221)
|+|.++.++.
T Consensus 84 l~V~~a~~~~ 93 (96)
T 2e44_A 84 LKVAYIPDEM 93 (96)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCccc
Confidence 9999998874
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.9e-17 Score=118.15 Aligned_cols=76 Identities=24% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||.++++++|+.+|++||.|.++.+.. ++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 568999999999999999999999999999998864 358999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++.++
T Consensus 95 V~~a~~~ 101 (101)
T 2la4_A 95 TGWGKER 101 (101)
T ss_dssp CCBCCCC
T ss_pred EEeccCC
Confidence 9998763
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-16 Score=112.95 Aligned_cols=77 Identities=21% Similarity=0.404 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQF--GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
...++|||+|||+.+++++|+.+|++| |.|..|.++ +|||||+|.+.++|..|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 367899999999999999999999999 889888653 36999999999999999999999999999
Q ss_pred EEEEEEeCCCcc
Q 047513 129 ILQVHLIPPEHV 140 (221)
Q Consensus 129 ~i~v~~a~~~~~ 140 (221)
.|+|.++.+...
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988654
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.4e-17 Score=126.99 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=90.5
Q ss_pred ccCCccccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEE
Q 047513 28 DAADFLPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIE 106 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~ 106 (221)
+.+++..+.|++++..+... ......++|||+|||..+++++|+++|++||.|..+.++.+.. +|.++|||||+
T Consensus 63 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~ 137 (168)
T 1b7f_A 63 KVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL-----TGRPRGVAFVR 137 (168)
T ss_dssp HHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT-----TCCEEEEEEEE
T ss_pred HhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC-----CCCcceEEEEE
Confidence 35788888888877654432 2334678999999999999999999999999999999999987 79999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 047513 107 FNDPEVAEVVADAMHGYLLFE--HILQVHLI 135 (221)
Q Consensus 107 f~~~~~a~~al~~l~g~~l~g--r~i~v~~a 135 (221)
|.+.++|..|+..|||..+.| ++|+|.+|
T Consensus 138 f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 138 YNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999999987 99999886
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=4.4e-17 Score=118.10 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+.+|++||.|..|.++ +|||||+|.+.++|..|+..|||..++|+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3477899999999999999999999999999999886 279999999999999999999999999999
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|+|.++.+...
T Consensus 95 l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 LEVVYSKLPAK 105 (108)
T ss_dssp CEEESCSCCC-
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=8.5e-17 Score=114.32 Aligned_cols=76 Identities=21% Similarity=0.462 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 50 VNKAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 50 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
..+.++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..|||..++|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34779999999998 99999999999999999999883 37999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q 047513 129 ILQVHLIPPE 138 (221)
Q Consensus 129 ~i~v~~a~~~ 138 (221)
.|+|.++.+.
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.3e-17 Score=119.23 Aligned_cols=81 Identities=21% Similarity=0.454 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+++|||+|||+++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+. +|..++|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 56899999999999999999999999999999999986 59999999999999999999997 99999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 80 v~~a~~~~~ 88 (102)
T 2xs2_A 80 LGPAIRKQN 88 (102)
T ss_dssp EEEEEECC-
T ss_pred EEECCcCcc
Confidence 999876543
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=123.67 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCe----eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTI----KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|..|+.. |+..|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~------~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP------DGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT------TSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC------CCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 367899999999999999999999999975 689999884 799999999999999999999975 999999
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
|+.|+|..+.+..
T Consensus 94 gR~i~V~~a~~~e 106 (123)
T 2dha_A 94 KRYIELFRSTAAE 106 (123)
T ss_dssp SCEECCEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999886544
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=117.23 Aligned_cols=78 Identities=28% Similarity=0.492 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 58999999999999999999999999999998775 35899999999999999999999999999999999
Q ss_pred EeCCCccc
Q 047513 134 LIPPEHVH 141 (221)
Q Consensus 134 ~a~~~~~~ 141 (221)
++.+....
T Consensus 71 ~a~~~~~~ 78 (101)
T 2hvz_A 71 LSTGMPRR 78 (101)
T ss_dssp ESSSCCCS
T ss_pred EccCCCCc
Confidence 99887643
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=4.1e-17 Score=128.45 Aligned_cols=85 Identities=18% Similarity=0.337 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
..+++|||+|||+.+++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 356899999999999999999999999999999999886 58999999999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 160 ~V~~a~~~~~~ 170 (177)
T 2f3j_A 160 DIQLVASQIDL 170 (177)
T ss_dssp EEEEESSGGGG
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=113.34 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+.+|++||.|..| +.++. +|. ||||+|.+.++|..|+. |||..|+|+.|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~-----~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD-----KGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS-----SCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC-----CCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 56799999999999999999999999999987 55554 555 99999999999999998 999999999999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.+....
T Consensus 76 V~~a~~~~~~ 85 (94)
T 2e5g_A 76 VRPREQKEFQ 85 (94)
T ss_dssp CBCSCCSCCC
T ss_pred EEECCcCCCC
Confidence 9988766543
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=8e-17 Score=143.34 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=80.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+.+|+++|..+|++||.|..|.|+.+.. +|.++|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-----SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-----CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 568999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 176 V~~a~~~~~ 184 (437)
T 3pgw_S 176 VDVERGRTV 184 (437)
T ss_pred EEEeCCCCC
Confidence 999987654
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=5.2e-17 Score=128.28 Aligned_cols=106 Identities=16% Similarity=0.275 Sum_probs=83.8
Q ss_pred CccccCCCCCCCCCCCC-------CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEE
Q 047513 31 DFLPLEGGPGRKLPEEK-------PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFG 103 (221)
Q Consensus 31 ~~~~l~g~~~r~~~~~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~a 103 (221)
++..+.|+++...+... ......++|||+|||+++++++|+++|+.||.|..|.++.+.. +|.++|||
T Consensus 75 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~a 149 (196)
T 1l3k_A 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG-----SGKKRGFA 149 (196)
T ss_dssp CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEE
T ss_pred CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC-----CCCccceE
Confidence 55666776555422211 1123558999999999999999999999999999999999987 89999999
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcccc
Q 047513 104 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHL 142 (221)
Q Consensus 104 fV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~~ 142 (221)
||+|.+.++|.+|+.. +|..|+|+.|.|.++.++....
T Consensus 150 fV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 150 FVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9999999999999965 8999999999999998876653
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=3.9e-17 Score=125.40 Aligned_cols=103 Identities=24% Similarity=0.321 Sum_probs=89.1
Q ss_pred ccCCccccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEE
Q 047513 28 DAADFLPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIE 106 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~ 106 (221)
+.+++..+.|++++..+... ......++|||+|||+.+++++|+++|++||.|..+.++.+.. +|.++|||||+
T Consensus 62 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~ 136 (167)
T 1fxl_A 62 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-----TGVSRGVGFIR 136 (167)
T ss_dssp HHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE
T ss_pred HHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC-----CCCccceEEEE
Confidence 35788888888877644432 2334678999999999999999999999999999999999987 89999999999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeE--EEEEEe
Q 047513 107 FNDPEVAEVVADAMHGYLLFEHI--LQVHLI 135 (221)
Q Consensus 107 f~~~~~a~~al~~l~g~~l~gr~--i~v~~a 135 (221)
|.+.++|.+|+..|||..++|+. |+|.||
T Consensus 137 f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 137 FDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999965 888775
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=118.63 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++||.|..|.++.. +|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-----------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4679999999999999999999999999999987643 47999999999999999999999999999999
Q ss_pred EEEeCCC
Q 047513 132 VHLIPPE 138 (221)
Q Consensus 132 v~~a~~~ 138 (221)
|.++...
T Consensus 78 V~~a~~~ 84 (111)
T 1whx_A 78 LEWAPIG 84 (111)
T ss_dssp EEEEETT
T ss_pred EEECCCC
Confidence 9998654
No 151
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=119.78 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC--ceeCC
Q 047513 51 NKAAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG--YLLFE 127 (221)
Q Consensus 51 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g--~~l~g 127 (221)
.++++|||+|||++ +++++|+++|++||.|.+|.+++. +|||||+|.+.++|..|++.||+ ..|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----------KSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 36789999999998 999999999999999999998653 58999999999999999998864 56999
Q ss_pred eEEEEEEeCCCcc
Q 047513 128 HILQVHLIPPEHV 140 (221)
Q Consensus 128 r~i~v~~a~~~~~ 140 (221)
+.|+|.++.+...
T Consensus 92 r~l~V~~a~~~~~ 104 (112)
T 1x4f_A 92 RCVKVDLSEKYKK 104 (112)
T ss_dssp SCCEEEEECSCSS
T ss_pred EEEEEEECccccc
Confidence 9999999976543
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=113.25 Aligned_cols=79 Identities=15% Similarity=0.328 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC-ceeCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGT-IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG-YLLFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g-~~l~gr 128 (221)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|..|+..||| ..++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 36789999999999999999999999999 5555542 248999999999999999999999 999999
Q ss_pred EEEEEEeCCCccc
Q 047513 129 ILQVHLIPPEHVH 141 (221)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (221)
.|+|.++.+....
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 9999999887554
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.6e-17 Score=115.27 Aligned_cols=77 Identities=21% Similarity=0.447 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
.+.++|||+|||+ .+++++|+.+|++||.|..|.+. +|||||+|.+.++|..|+..|||..+.|+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 4778999999998 99999999999999999999883 379999999999999999999999999999
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|+|.++.+...
T Consensus 75 l~V~~a~~~~~ 85 (96)
T 2kvi_A 75 LILEVSSSNAR 85 (96)
T ss_dssp BCEEEEECCCC
T ss_pred EEEEEcCcCCC
Confidence 99999977644
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.8e-17 Score=125.89 Aligned_cols=101 Identities=24% Similarity=0.397 Sum_probs=86.2
Q ss_pred cccCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHH
Q 047513 33 LPLEGGPGRKLPEEK-PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPE 111 (221)
Q Consensus 33 ~~l~g~~~r~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~ 111 (221)
..+.|+++....... ......++|||+|||+.+++++|+++|+.||.|..+.++.++. +|.++|||||+|.+.+
T Consensus 66 ~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 66 HILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD-----TGQSRGFGFVTYDSAD 140 (167)
T ss_dssp CEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS-----SSTTSEEEEEEESSHH
T ss_pred cccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC-----CCccceEEEEEECCHH
Confidence 456666665543322 1223567999999999999999999999999999999999987 8999999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEeCCCc
Q 047513 112 VAEVVADAMHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 112 ~a~~al~~l~g~~l~gr~i~v~~a~~~~ 139 (221)
+|.+|++ +||..++|+.|.|.++.|++
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 9999996 89999999999999998863
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=9.1e-18 Score=127.19 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++|+++|+++|++|| |..|.|+.++ .|+++|||||+|.+.++|..|| .+|+..|+|+.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~------~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP------DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS------SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC------CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 4678999999999999999999999999 6799999987 4999999999999999999999 899999999999
Q ss_pred EEEEeCCCcccc
Q 047513 131 QVHLIPPEHVHL 142 (221)
Q Consensus 131 ~v~~a~~~~~~~ 142 (221)
+|.++.+.....
T Consensus 116 ~V~~a~~~~~~~ 127 (139)
T 2hgn_A 116 ELFLNSTTGASN 127 (139)
T ss_dssp CCEECCCSCC--
T ss_pred EEEECCCCCCCC
Confidence 999998765543
No 156
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=4.8e-17 Score=126.49 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=85.9
Q ss_pred cCCccccCCCCCCCCCCCC---CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEE
Q 047513 29 AADFLPLEGGPGRKLPEEK---PLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFI 105 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~---~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV 105 (221)
.+++..+.|++++..+... ......++|||+|||+.+++++|+++|+.||.|..+ .. +|.++|||||
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~-----~~~~~g~afV 141 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ-----DGKSKGIAYI 141 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS-----SSSCCSEEEE
T ss_pred hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC-----CCCCceEEEE
Confidence 4788888888777644432 233467899999999999999999999999988765 33 7899999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 047513 106 EFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 138 (221)
Q Consensus 106 ~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~ 138 (221)
+|.+.++|.+|+..|||..|+|+.|+|.++.|+
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 142 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999999875
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.5e-16 Score=125.58 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++|+++|+++|+.||.|.+|.++.++. +|.++|||||+|.+.++|..|+.. ++..+.|+.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-----TKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-----CCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3678999999999999999999999999999999999988 899999999999999999999965 9999999999
Q ss_pred EEEEeCCCcc
Q 047513 131 QVHLIPPEHV 140 (221)
Q Consensus 131 ~v~~a~~~~~ 140 (221)
.|.++.+...
T Consensus 85 ~v~~~~~~~~ 94 (196)
T 1l3k_A 85 EPKRAVSRED 94 (196)
T ss_dssp EEEECCC---
T ss_pred eeecccCccc
Confidence 9999876543
No 158
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=3.7e-16 Score=113.20 Aligned_cols=77 Identities=14% Similarity=0.392 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 51 NKAAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
...++|||+|||+. +++++|+++|++||.|..|.+ . +|||||+|.+.++|..|+..|||..|+|+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H-----------KGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E-----------TTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 35689999999999 999999999999999999988 1 379999999999999999999999999999
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|+|.++.+...
T Consensus 92 l~V~~a~~~~~ 102 (110)
T 1wf1_A 92 LDINMAGEPKP 102 (110)
T ss_dssp CCEEESCCCCS
T ss_pred EEEEECCCCCC
Confidence 99999975443
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=4.2e-17 Score=121.49 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee--EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIK--RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
...++|||+|||+++|+++|+++|+.| .|. .|.|+.++ .|+++|||||+|.+.++|.+|+. +++..|+|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~------~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP------EGKITGEAFVQFASQELAEKALG-KHKERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS------SSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC------CCCCceEEEEEECCHHHHHHHHH-HCCCEECCE
Confidence 467899999999999999999999999 566 89999987 49999999999999999999996 588999999
Q ss_pred EEEEEEeCCC
Q 047513 129 ILQVHLIPPE 138 (221)
Q Consensus 129 ~i~v~~a~~~ 138 (221)
.|+|..+.++
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999988654
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=110.73 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|| ++++++|+.+|++||.|..|.+.. ++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 36789999996 899999999999999999998843 35899999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-16 Score=121.24 Aligned_cols=81 Identities=20% Similarity=0.452 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|..|+..|||..+.|+.|.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEE
Confidence 589999999999999999999999999999999987 47899999999999999999999999999999999999
Q ss_pred EeCCCcc
Q 047513 134 LIPPEHV 140 (221)
Q Consensus 134 ~a~~~~~ 140 (221)
++.+...
T Consensus 75 ~~~~~~~ 81 (166)
T 3md3_A 75 WAFQSQQ 81 (166)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9876543
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=3.7e-16 Score=116.71 Aligned_cols=78 Identities=15% Similarity=0.340 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeE-EEEEECCHHHHHHHHHHhCCceeCC--eE
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HI 129 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~l~g~~l~g--r~ 129 (221)
--.|||+||++.+|+++|+++|++||.|.+|.+.... +|| |||+|.+.++|..|++.|||..|.| +.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 3468899999999999999999999999999887642 477 9999999999999999999999988 99
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|+|.++++...
T Consensus 98 LrI~~ak~~~l 108 (130)
T 3zzy_A 98 LRIDFSKLTSL 108 (130)
T ss_dssp EEEEECSCSSC
T ss_pred EEEEecCCCce
Confidence 99999988754
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2.8e-16 Score=121.67 Aligned_cols=80 Identities=14% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC--eE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g--r~ 129 (221)
...+|||+||++.+|+++|+++|++||.|..|.+... .++|||||+|.+.++|..|++.|||..|.| +.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 4467999999999999999999999999999998643 246999999999999999999999999965 99
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|+|.++++...
T Consensus 116 L~V~~Ak~~~l 126 (164)
T 1sjr_A 116 LRIDFSKLTSL 126 (164)
T ss_dssp EEEEECSSSSC
T ss_pred EEEEEecCCcc
Confidence 99999998754
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=116.54 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCC---CCceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNT---GKSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
...++|||+|||+++++++|+++|++||.|. +.++.+.. + |+++|||||+|.+.++|.+|++.|+ .++|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~-----~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G 77 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE-----SKSYFPPKGYAFLLFQEESSVQALIDACL--EEDG 77 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS-----SCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC-----CCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCC
Confidence 3678999999999999999999999999999 88888776 5 7999999999999999999999984 3677
Q ss_pred eEEEEEEeCC
Q 047513 128 HILQVHLIPP 137 (221)
Q Consensus 128 r~i~v~~a~~ 137 (221)
+.|.+..+.+
T Consensus 78 ~~~~~~~~~~ 87 (114)
T 2dnl_A 78 KLYLCVSSPT 87 (114)
T ss_dssp EEEEEECCSS
T ss_pred cEEEeccCCC
Confidence 7777776543
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.5e-16 Score=109.72 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++| .|..+.+.. ++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR-----------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG-----------GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC-----------CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 56899999999999999999999999 999988841 468999999999999999999999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|.++..+.
T Consensus 72 V~~a~~~~ 79 (88)
T 1wg1_A 72 VQLQPTDA 79 (88)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99986653
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=110.01 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCcE-EEEcCCCCCCcHHH----HHHHHhcc-CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 52 KAAV-LYIGRIRHGFYEKE----MHAFFSQF-GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 52 ~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
+..| |||+|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|||..+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------------tg---G~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------------TG---CSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------------CT---TCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------------ec---CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3445 99999999999987 66899999 599887 35 9999999999999999999999999
Q ss_pred CCeEEEEEEeCCCcc
Q 047513 126 FEHILQVHLIPPEHV 140 (221)
Q Consensus 126 ~gr~i~v~~a~~~~~ 140 (221)
.||+|+|.+|+....
T Consensus 72 ~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 72 FGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSCCEEESSCCSCC
T ss_pred CCceEEEEecCCCcc
Confidence 999999999987643
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=5.6e-16 Score=111.82 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRH-----GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
++++|+|.||.. +-++++|+++|++||.|.+|.++.++.+ ++.++|||||+|.+.++|.+|+..|||..|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~----~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA----PDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC----CTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC----CCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 678999999963 2378999999999999999999998651 3689999999999999999999999999999
Q ss_pred CeEEEEEEeCCCcc
Q 047513 127 EHILQVHLIPPEHV 140 (221)
Q Consensus 127 gr~i~v~~a~~~~~ 140 (221)
|+.|.|.++.+..-
T Consensus 83 Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 83 GRVVKACFYNLDKF 96 (105)
T ss_dssp TEECEEEECCHHHH
T ss_pred CcEEEEEEcCHHHh
Confidence 99999999976443
No 168
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=2.6e-16 Score=121.79 Aligned_cols=79 Identities=28% Similarity=0.463 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC---Ce
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF---EH 128 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~---gr 128 (221)
..++|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||..+. ++
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP------DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT------TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC------CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 66899999999999999999999999999999999986 5899999999999999999999999998766 49
Q ss_pred EEEEEEeC
Q 047513 129 ILQVHLIP 136 (221)
Q Consensus 129 ~i~v~~a~ 136 (221)
+|+|.+|.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999874
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=4.9e-16 Score=108.70 Aligned_cols=76 Identities=22% Similarity=0.483 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce--eCCe
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL--LFEH 128 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~--l~gr 128 (221)
..+++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.. ++|.. +.|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------FRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------CCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------CCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 37789999999999999999999999999999998764 46999999999999883 56655 4599
Q ss_pred EEEEEEeCCCcc
Q 047513 129 ILQVHLIPPEHV 140 (221)
Q Consensus 129 ~i~v~~a~~~~~ 140 (221)
.|.|.++.|+..
T Consensus 75 ~v~v~~a~~k~~ 86 (89)
T 3d2w_A 75 SVHISNAEPKHN 86 (89)
T ss_dssp EEEEEECC----
T ss_pred EEEEEEcCCCCc
Confidence 999999987654
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=3.6e-16 Score=130.85 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=93.0
Q ss_pred ccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEE
Q 047513 28 DAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEF 107 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f 107 (221)
..+++..+.|+++++.+.. ..++|||+|||+.+++++|+++|+.||.|..+.++.+.. +|.++|||||+|
T Consensus 75 ~~l~~~~~~g~~i~v~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~f 144 (284)
T 3smz_A 75 NAFHQSRLRERELSVQLQP-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER-----TGQSKGYGFAEY 144 (284)
T ss_dssp HHHTTCEETTEECEEEECC-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEE
T ss_pred HHcCCCeeCCeEEEEEecC-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC-----CCccceEEEEEE
Confidence 4568888888887775533 568999999999999999999999999999999999987 899999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 108 NDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 108 ~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
.+.++|..|+..|||..++|+.|.|.++.+...
T Consensus 145 ~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 145 MKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999987654
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=114.55 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=68.5
Q ss_pred CCcEEEE--cCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee----
Q 047513 52 KAAVLYI--GRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL---- 125 (221)
Q Consensus 52 ~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l---- 125 (221)
+..+||| |||++++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|||..+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 5678999 889999999999999999999999877532 58999999999999999999999988
Q ss_pred -CCeEEEEEEeCCC
Q 047513 126 -FEHILQVHLIPPE 138 (221)
Q Consensus 126 -~gr~i~v~~a~~~ 138 (221)
.|++|.|.++...
T Consensus 93 g~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 93 GQKITLYLNFVEKV 106 (114)
T ss_dssp SCEEECEEEEESCC
T ss_pred CCCcEEEEEecccC
Confidence 6899999998754
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=2.9e-16 Score=131.44 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=92.9
Q ss_pred ccCCccccCCCCCCCCCCCC----CCCCCCcEEEEcCCCCCC-cHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeE
Q 047513 28 DAADFLPLEGGPGRKLPEEK----PLVNKAAVLYIGRIRHGF-YEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHF 102 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~----~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~ 102 (221)
..+++..+.|+++++.+... ......++|||+|||+.+ ++++|+++|+.||.|..+.++.+. +|.++||
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~------~g~~~g~ 228 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ------DGQLKGF 228 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS------SCCEEEE
T ss_pred HHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC------CCCcccE
Confidence 36788888888777644332 223467899999999995 999999999999999999999987 5999999
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 103 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 103 afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
|||+|.+.++|.+|+..|||..++|+.|+|.++.|...
T Consensus 229 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 229 AVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999999999999999999988765
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=6e-16 Score=124.48 Aligned_cols=77 Identities=12% Similarity=0.292 Sum_probs=71.6
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIR-HGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
++++|||+||| +.+++++|+.+|++||.|.+|+++.+. +|||||+|.+.++|..|++.|||..+.|+.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----------PGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----------TTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 57899999999 899999999999999999999997753 5899999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
+|.++...
T Consensus 73 ~v~~s~~~ 80 (205)
T 3tyt_A 73 NVCVSKQP 80 (205)
T ss_dssp EEEECSCS
T ss_pred EEEEccCC
Confidence 99998754
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=6.1e-16 Score=128.48 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=89.2
Q ss_pred ccCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEE
Q 047513 28 DAADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEF 107 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f 107 (221)
..+|+..+.|+++++.+.. +.++|||+|||+.+|+++|+++|+.||.|..|.++.+. +|.++|||||+|
T Consensus 76 ~~l~g~~i~g~~l~v~~a~-----~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~------~g~~~g~afV~f 144 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFAT-----HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD------RGRATGKGFVEF 144 (261)
T ss_dssp HHHTTCEETTEECEEEECC-----CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET------TSCEEEEEEEEE
T ss_pred HHcCCcEECCceeEeeecc-----cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC------CCCcCcEEEEEe
Confidence 3578888899888776554 56899999999999999999999999999999999994 799999999999
Q ss_pred CCHHHHHHHHHHhC-CceeC---CeEEEEEEeCCCcc
Q 047513 108 NDPEVAEVVADAMH-GYLLF---EHILQVHLIPPEHV 140 (221)
Q Consensus 108 ~~~~~a~~al~~l~-g~~l~---gr~i~v~~a~~~~~ 140 (221)
.+.++|..|+..|| |..+. +++|.|.++.+...
T Consensus 145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99999999999995 55555 99999999987543
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=5.3e-16 Score=124.26 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|+.||.|..|.++.+.. +|.++|||||+|.+.++|..|++.|||..|+|+.|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV-----TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C-----C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 558999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEeCCCc
Q 047513 132 VHLIPPEH 139 (221)
Q Consensus 132 v~~a~~~~ 139 (221)
|.++....
T Consensus 102 v~~~~~~~ 109 (216)
T 2qfj_A 102 VGRPSNIG 109 (216)
T ss_dssp EECCSCCG
T ss_pred EecCCCcc
Confidence 98876554
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.7e-15 Score=112.44 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeE-EEEEECCHHHHHHHHHHhCCceeCC--eEEE
Q 047513 55 VLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HILQ 131 (221)
Q Consensus 55 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~l~g~~l~g--r~i~ 131 (221)
.|||+||++.+++++|+++|++||.|..|.+... + || |||+|.+.++|..|++.|||..|.| +.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 4689999999999999999999999999988542 2 76 9999999999999999999999987 6999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.+|.+...
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999998754
No 177
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.9e-16 Score=114.99 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE-
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI- 129 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~- 129 (221)
...++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|..||+.|||..|+|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 35689999999999999999999999999999988653 79999999999999999999999999988
Q ss_pred ----EEEEEeCCCcc
Q 047513 130 ----LQVHLIPPEHV 140 (221)
Q Consensus 130 ----i~v~~a~~~~~ 140 (221)
|+|..+.+...
T Consensus 82 ~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 82 ETAYIRVKVDGPRSP 96 (115)
T ss_dssp CCCBCEEEECC----
T ss_pred eeEEEEeccCCCCCC
Confidence 88888776543
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=8.6e-16 Score=118.84 Aligned_cols=83 Identities=22% Similarity=0.484 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCC--CceeEEEEEECCHHHHHHHHHHhCCceeC---
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTG--KSKHFGFIEFNDPEVAEVVADAMHGYLLF--- 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg--~~~g~afV~f~~~~~a~~al~~l~g~~l~--- 126 (221)
+.++|||+|||+++++++|+++|++||.|.+|.++.++. +| .++|||||+|.+.++|..|++.|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 76 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS-----QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM 76 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS-----SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-----CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC
Confidence 568999999999999999999999999999999999987 65 89999999999999999999999998776
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
++.+.+.++.+..
T Consensus 77 ~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 77 HHPIQMKPADSEK 89 (175)
T ss_dssp SSCCEEEECGGGC
T ss_pred ccceEEccccccc
Confidence 6778888776543
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=9.8e-16 Score=105.98 Aligned_cols=71 Identities=28% Similarity=0.547 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQF----G-------TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
..++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|..|+ .|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------SSEEEEEESSHHHHHHHG-GG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------CcEEEEEcCCHHHHHHHH-hc
Confidence 56899999999999999999999999 8 8999888654 589999999999999999 99
Q ss_pred CCceeCCeEEEEEE
Q 047513 121 HGYLLFEHILQVHL 134 (221)
Q Consensus 121 ~g~~l~gr~i~v~~ 134 (221)
||..+.|+.|+|..
T Consensus 73 ~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 73 DGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCEETTEECEEEC
T ss_pred CCCEECCeEEEEeC
Confidence 99999999999873
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=6.3e-16 Score=118.97 Aligned_cols=82 Identities=23% Similarity=0.547 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
++++|||+|||+++|+++|+++|+.||.|.+|.++.++. +|.++|||||+|.+.++|..|+. ++..++|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-----TGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT-----TSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC-----CCCccceEEEEEccHHHHHHHHh--cccccCCeEcc
Confidence 468999999999999999999999999999999999987 89999999999999999999997 46789999999
Q ss_pred EEEeCCCcc
Q 047513 132 VHLIPPEHV 140 (221)
Q Consensus 132 v~~a~~~~~ 140 (221)
|.++.+...
T Consensus 75 v~~~~~~~~ 83 (167)
T 2cjk_A 75 PKRAIPRDE 83 (167)
T ss_dssp CEECCCHHH
T ss_pred cccccchhh
Confidence 999876543
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=5.8e-16 Score=130.05 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=87.9
Q ss_pred ccCCccccCCCCCCCCCCCC--------CCCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCC
Q 047513 28 DAADFLPLEGGPGRKLPEEK--------PLVNKAAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGK 98 (221)
Q Consensus 28 ~~~~~~~l~g~~~r~~~~~~--------~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~ 98 (221)
..+++..+.|+++.+.+... ......++|||+|||+. +++++|+++|+.||.|..|.++.+... ||.
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----tg~ 252 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE----HSF 252 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------C
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc----CCC
Confidence 34788888888766533221 12346689999999999 999999999999999999999887530 289
Q ss_pred ceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCC
Q 047513 99 SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 138 (221)
Q Consensus 99 ~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~ 138 (221)
++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.++
T Consensus 253 ~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 253 NNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999999999 99999999999999999875
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.8e-15 Score=120.61 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
..++|||+|||+++++++|+++|++||.|..|+++.+. +|.++|||||+|.+.++|..|+..+ +..++|+.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~------~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT------TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC------CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEE
Confidence 35899999999999999999999999999999999986 5899999999999999999999665 4599999999
Q ss_pred EEEeCC
Q 047513 132 VHLIPP 137 (221)
Q Consensus 132 v~~a~~ 137 (221)
|.++..
T Consensus 181 V~~~~~ 186 (193)
T 2voo_A 181 ILFKDD 186 (193)
T ss_dssp EEETTT
T ss_pred EEEhHH
Confidence 998654
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.2e-15 Score=124.91 Aligned_cols=81 Identities=21% Similarity=0.452 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 51 NKAAVLYIGRIRHGFYEKEMH----AFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
.+.++|||+|||+++++++|+ ++|+.||.|..|.++. +|+++|||||+|.+.++|..|++.|||..|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--------SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--------CCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 467899999999999999966 8999999999998876 4789999999999999999999999999999
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
|+.|+|.++.+..
T Consensus 79 g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 79 DKPMRIQYAKTDS 91 (282)
T ss_pred CcEEEEEEeccCc
Confidence 9999999997654
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=106.10 Aligned_cols=78 Identities=22% Similarity=0.486 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 131 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~ 131 (221)
.+++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++++. .+..+.|+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------FRAFAFVTFADDQIAQSLCG--EDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------CCSCCEEECSCHHHHHHTTT--CEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------CCCEEEEEECCHHHHHHHhc--CCceeCCEEEE
Confidence 6789999999999999999999999999999988754 46999999999999975421 13456899999
Q ss_pred EEEeCCCccc
Q 047513 132 VHLIPPEHVH 141 (221)
Q Consensus 132 v~~a~~~~~~ 141 (221)
|.++.++...
T Consensus 72 v~~a~~~~~~ 81 (88)
T 1wf0_A 72 ISNAEPKHNS 81 (88)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9999887553
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=3.5e-15 Score=110.30 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|| ++++++|+++|++||.|..|.+.. ++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46789999996 699999999999999999998853 35899999999999999999999999999999
Q ss_pred EEEEeCCCccc
Q 047513 131 QVHLIPPEHVH 141 (221)
Q Consensus 131 ~v~~a~~~~~~ 141 (221)
+|.++.+....
T Consensus 104 ~V~~a~~~~~~ 114 (121)
T 2bz2_A 104 KVNIARKQPML 114 (121)
T ss_dssp EEEECCSSCC-
T ss_pred EEEEeCCCCCC
Confidence 99999876543
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=7.3e-16 Score=123.95 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCe--eEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe-
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTI--KRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH- 128 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr- 128 (221)
+.++|||+|||+++++++|+++|++||.| ..++++.+. +..+|||||+|.+.++|..|+..|||..|.|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-------~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-------SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-------SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-------CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 45789999999999999999999999999 899888773 45569999999999999999999999999876
Q ss_pred ---EEEEEEe
Q 047513 129 ---ILQVHLI 135 (221)
Q Consensus 129 ---~i~v~~a 135 (221)
++.|+++
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 6777765
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=3.2e-15 Score=122.69 Aligned_cols=79 Identities=29% Similarity=0.439 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 50 VNKAAVLYIGRIRHGF---------YEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
....++||||||+..+ ++++|+.+|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----------kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----------KNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----------CCEEEEEeCCHHHHHHHHHHh
Confidence 3467899999999998 79999999999999999998764 589999999999999999999
Q ss_pred CCcee------------CCeEEEEEEeCCCc
Q 047513 121 HGYLL------------FEHILQVHLIPPEH 139 (221)
Q Consensus 121 ~g~~l------------~gr~i~v~~a~~~~ 139 (221)
||..| .|+.|.|.||.+..
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999 89999999997654
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=5e-15 Score=120.60 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 48 PLVNKAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 48 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
.+..++++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3344779999999999 99999999999999999999998874 589999999999999999999999999
Q ss_pred CeEEEEEEeCCC
Q 047513 127 EHILQVHLIPPE 138 (221)
Q Consensus 127 gr~i~v~~a~~~ 138 (221)
|+.|.|.++.+.
T Consensus 99 g~~l~v~~a~~~ 110 (229)
T 2adc_A 99 GKPIRITLSKHQ 110 (229)
T ss_dssp SSBCEEECCSCC
T ss_pred CeEEEEEEecCc
Confidence 999999999765
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=2.6e-15 Score=126.12 Aligned_cols=101 Identities=10% Similarity=0.179 Sum_probs=83.6
Q ss_pred cCCccccCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEE
Q 047513 29 AADFLPLEGGPGRKLPEEKPLVNKAAVLYIGRIRHGFYEKEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEF 107 (221)
Q Consensus 29 ~~~~~~l~g~~~r~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f 107 (221)
.+++..+.|++++..+. ..++|||+|||+.+++++|+++|+.|| .|..|.++.+. .|.++|||||+|
T Consensus 99 ~~~~~~~~g~~i~v~~~------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~------~~~~~g~afV~f 166 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHL------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR------FNTSRRFAYIDV 166 (292)
T ss_dssp TTTTCEETTEECEEEEC------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------CCEEEEEC
T ss_pred HhCCcEeCCcEEEEEEC------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC------CCCcceEEEEEE
Confidence 46888888887776543 568999999999999999999999999 99999999887 478999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEEeCCCccc
Q 047513 108 NDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 108 ~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~~ 141 (221)
.+.++|..|+..|||..++|+.|.|.++.|....
T Consensus 167 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 9999999999999999999999999999876543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=119.85 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-gr~ 129 (221)
+.++|||+|||..+++++|+++|+.|| .|..+.++.+. +|||||+|.+.++|..|+..|||..++ |+.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----------RKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----------SSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 478999999999999999999999999 99999986642 589999999999999999999999999 999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|+|.++.|.
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999764
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.7e-15 Score=117.71 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 047513 50 VNKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 129 (221)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~ 129 (221)
....++|||+|||+++++++|+++|..||.+.. .++.+.. +|.++|||||+|.+.++|..|+ .|||..+.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~-----~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR-----TGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE-----EETTTTEEEEEESSHHHHHHHH-HGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECC-----CCccccEEEEEECCHHHHHHHH-hcCCCEeCCeE
Confidence 347799999999999999999999999998765 2334444 6889999999999999999999 59999999999
Q ss_pred EEEEEeCCCcc
Q 047513 130 LQVHLIPPEHV 140 (221)
Q Consensus 130 i~v~~a~~~~~ 140 (221)
|.|.++.+...
T Consensus 83 l~v~~~~~~~~ 93 (175)
T 1fje_B 83 IKLEKPKGRDS 93 (175)
T ss_dssp EEEECCCCSSC
T ss_pred EEEecCCCccc
Confidence 99999987543
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=2e-14 Score=117.03 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG-TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHI 129 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-gr~ 129 (221)
+.++|||+|||+.+++++|+++|+.|| .|..|.++.. .+|||||+|.+.++|.+|+..|||..++ |+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------STTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------CCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 468999999999999999999999999 9999998653 2489999999999999999999999999 999
Q ss_pred EEEEEeCCC
Q 047513 130 LQVHLIPPE 138 (221)
Q Consensus 130 i~v~~a~~~ 138 (221)
|+|.++.+.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999764
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=9.4e-15 Score=115.81 Aligned_cols=77 Identities=18% Similarity=0.376 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 52 KAAVLYIGRIRH-GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
.+++|||+|||+ .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 468999999999 99999999999999999999998763 5899999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
.|.++.+.
T Consensus 72 ~v~~a~~~ 79 (198)
T 1qm9_A 72 RITLSKHQ 79 (198)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999765
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=3.1e-14 Score=118.92 Aligned_cols=75 Identities=19% Similarity=0.446 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC-CeEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-gr~i 130 (221)
..++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|+ |+.|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 56899999999999999999999999999999998653 489999999999999999999999999 9999
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
+|.|++
T Consensus 276 ~v~~ak 281 (282)
T 3pgw_A 276 KISFAK 281 (282)
T ss_pred EEEEec
Confidence 999985
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=5.5e-15 Score=106.37 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=64.8
Q ss_pred EcCCCCCCcHHHHHHHH------------hccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 58 IGRIRHGFYEKEMHAFF------------SQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 58 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
+.|||+.+++++|+++| ++||.|.+|.++.+. +|+++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~------~~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL------GDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS------SSSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC------CCCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 56777778888777666 999999999999876 478999999999999999999999999999
Q ss_pred CCeEEEEEEeC
Q 047513 126 FEHILQVHLIP 136 (221)
Q Consensus 126 ~gr~i~v~~a~ 136 (221)
+|+.|+|.++.
T Consensus 94 ~Gr~i~v~~sp 104 (104)
T 1jmt_A 94 NGQPIHAELSP 104 (104)
T ss_dssp TTEECCEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999863
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.4e-14 Score=101.51 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCc-----------HHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRHGFY-----------EKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|..|+..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--------~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--------HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--------CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--------CCCEEEEEEECCHHHHHHHHHHc
Confidence 678999999944332 5899999999999999965 442 37899999999999999999999
Q ss_pred CCceeCCeEEEEEEeCCCc
Q 047513 121 HGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 121 ~g~~l~gr~i~v~~a~~~~ 139 (221)
||..|+|+.|+|.++.+..
T Consensus 85 ng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TTCEETTEECEEEECCSCC
T ss_pred CCCEECCcEEEEEEeCCCC
Confidence 9999999999999998764
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=1.6e-14 Score=104.08 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=71.7
Q ss_pred CCcEEEEcCC--CCCC--------cHHHHHHHHhccCCeeEEEEeecCcccccCC--CCceeEEEEEECCHHHHHHHHHH
Q 047513 52 KAAVLYIGRI--RHGF--------YEKEMHAFFSQFGTIKRLRIARNKKLRVLNT--GKSKHFGFIEFNDPEVAEVVADA 119 (221)
Q Consensus 52 ~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~t--g~~~g~afV~f~~~~~a~~al~~ 119 (221)
++++|.|.|+ |..+ .+++|++.|++||.|.+|.|+++.. + +.++|||||+|.+.++|.+|+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~-----~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD-----GVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT-----TBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC-----CCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 5678999998 3333 3468999999999999999998865 3 46899999999999999999999
Q ss_pred hCCceeCCeEEEEEEeCCCc
Q 047513 120 MHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 120 l~g~~l~gr~i~v~~a~~~~ 139 (221)
|||..|+||.|+|.++.+..
T Consensus 79 lnG~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 79 LTGRKFANRVVVTKYCDPDS 98 (105)
T ss_dssp HTTCEETTEECEEEEECHHH
T ss_pred hCCCEeCCCEEEEEEeCHHH
Confidence 99999999999999987653
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=4.5e-14 Score=117.17 Aligned_cols=77 Identities=21% Similarity=0.501 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 130 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i 130 (221)
...++|||+|||+++|+++|+.+|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 46689999999999999999999999999999988553 5899999999999999999999999999999
Q ss_pred EEEEeCCC
Q 047513 131 QVHLIPPE 138 (221)
Q Consensus 131 ~v~~a~~~ 138 (221)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998764
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.6e-14 Score=103.80 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRH-----GFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
++++|+|.|+-. +-.+++|++.|++||.|.+|.|+.++.+ ...++.++||+||+|.+.++|.+|+..|||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~-~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQG-EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEES-SSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCC-cccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 578999999832 2246899999999999999999987540 0002567899999999999999999999999999
Q ss_pred CeEEEEEEeCCC
Q 047513 127 EHILQVHLIPPE 138 (221)
Q Consensus 127 gr~i~v~~a~~~ 138 (221)
||.|+|.++...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998654
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=8.4e-14 Score=107.48 Aligned_cols=76 Identities=26% Similarity=0.481 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQF----G-------TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
+.++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|..|+ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-----------~~~~g~afV~f~~~~~A~~A~-~~ 70 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------NQDKNFAFLEFRSVDETTQAM-AF 70 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-----------ETTTTEEEEEESSHHHHHHHG-GG
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-----------cCCCCEEEEEeCCHHHHHHHH-Hh
Confidence 56899999999999999999999999 6 5666654 344689999999999999999 89
Q ss_pred CCceeCCeEEEEEEeCCCc
Q 047513 121 HGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 121 ~g~~l~gr~i~v~~a~~~~ 139 (221)
||..+.|+.|.|.++.+..
T Consensus 71 ~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 71 DGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTCEETTEECEEECCSSCC
T ss_pred CCcEecCceeeecCCcccC
Confidence 9999999999999876553
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=1e-13 Score=109.33 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC-----------CeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFG-----------TIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
..++|||+|||+++++++|+++|+.|| .|..+.+ +.++|||||+|.+.++|..|+ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------~~~~g~afV~F~~~~~A~~Al-~l 70 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------NQDKNFAFLEFRSVDETTQAM-AF 70 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------ETTTTEEEEEESCSHHHHHHG-GG
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------cCCCCEEEEEeCCHHHHHHHH-Hh
Confidence 568999999999999999999999994 4444443 456799999999999999999 89
Q ss_pred CCceeCCeEEEEEEeCCCc
Q 047513 121 HGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 121 ~g~~l~gr~i~v~~a~~~~ 139 (221)
||..|.|+.|.|.++.+..
T Consensus 71 ~g~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 71 DGIIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEETTEEEEEECCCCCC
T ss_pred cCCEEcCceEEEeCCCCCC
Confidence 9999999999999987653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=91.67 Aligned_cols=66 Identities=17% Similarity=0.352 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCcc
Q 047513 63 HGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHV 140 (221)
Q Consensus 63 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~~ 140 (221)
..+++++|+++|++||.|..|.++. +++|||||+|.+.++|..|+..+++ +.|++|+|.++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 5689999999999999999998863 3579999999999999999987555 6799999999987654
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=9.7e-12 Score=90.76 Aligned_cols=81 Identities=10% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCC--C--------CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRH--G--------FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~--~--------~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
+++.|.+.|+=. . -.+++|++.|++||.|.+|.+..+ + ++||+||+|.+.++|.+|+..||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-------~--~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-------S--AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-------C--TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-------C--CcEEEEEEECCHHHHHHHHHHhC
Confidence 567888888722 1 123588999999999999988664 2 48999999999999999999999
Q ss_pred CceeCCeEEEEEEeCCCccc
Q 047513 122 GYLLFEHILQVHLIPPEHVH 141 (221)
Q Consensus 122 g~~l~gr~i~v~~a~~~~~~ 141 (221)
|..|+||.|+|.++....-.
T Consensus 77 G~~f~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 77 GRWFAGKMITAAYVPLPTYH 96 (114)
T ss_dssp TCEETTEECEEEEECHHHHH
T ss_pred CCEECCEEEEEEEEcHHHHH
Confidence 99999999999999765443
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=4.7e-12 Score=108.99 Aligned_cols=75 Identities=12% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCCcEEEEcC--CCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC--
Q 047513 51 NKAAVLYIGR--IRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF-- 126 (221)
Q Consensus 51 ~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~-- 126 (221)
.++.+||||| |++.+|+++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 3678999999 578999999999999999999886643 3589999999999999999999999873
Q ss_pred -Ce--EEEEEEeC
Q 047513 127 -EH--ILQVHLIP 136 (221)
Q Consensus 127 -gr--~i~v~~a~ 136 (221)
|+ .|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 44 57777774
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.5e-11 Score=82.13 Aligned_cols=73 Identities=18% Similarity=0.379 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCC----CCcH----HHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 047513 52 KAAVLYIGRIRH----GFYE----KEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGY 123 (221)
Q Consensus 52 ~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~ 123 (221)
+..||+|...+. +..+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|+. |||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------~~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------KMWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------SEEEEESSHHHHHHGGG-GTTC
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------CEEEEECChHHHHHHHh-cCCe
Confidence 567898987762 2333 578899999999999999886 27999999999999997 9999
Q ss_pred eeCCeEEEEEEeCCC
Q 047513 124 LLFEHILQVHLIPPE 138 (221)
Q Consensus 124 ~l~gr~i~v~~a~~~ 138 (221)
.++|+.|+|.++.|.
T Consensus 72 ~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 72 ELLNRTITIALKSPS 86 (91)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EeCCeEEEEEeCCCC
Confidence 999999999999876
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-10 Score=85.69 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECC-HHHHHHHHHHhC--CceeC
Q 047513 51 NKAAVLYIGRIRHG-FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFND-PEVAEVVADAMH--GYLLF 126 (221)
Q Consensus 51 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~-~~~a~~al~~l~--g~~l~ 126 (221)
..++.|||+||+++ ++.++|+++|++||.|.+|.+..+.. .|||.|.+ ..+|..|+..|| |..|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 37899999999999 99999999999999999999988764 59999999 899999999995 67888
Q ss_pred CeEEEEEEeC
Q 047513 127 EHILQVHLIP 136 (221)
Q Consensus 127 gr~i~v~~a~ 136 (221)
|..+.+.+..
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9888888754
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=4.9e-10 Score=90.42 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEeCCCc
Q 047513 65 FYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 139 (221)
Q Consensus 65 ~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr~i~v~~a~~~~ 139 (221)
-.+++|++.|++||.|.++.++.+..+ -..+++++|++||+|.+.++|.+|+..|||..++||.|.|.++....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~-~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQG-EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECC-SSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCC-cccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 456789999999999999999865430 00145899999999999999999999999999999999999986543
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.7e-09 Score=75.36 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCC------CcH---HHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 047513 52 KAAVLYIGRIRHG------FYE---KEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG 122 (221)
Q Consensus 52 ~~~~l~V~nLp~~------~te---~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g 122 (221)
+..||+|..++.. +.+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+||. |||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------------EEEECSCSHHHHHHHH-GGG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------------EEEEEcChHHHHHHHh-cCC
Confidence 6689999988743 232 4688999999999999998872 8999999999999997 999
Q ss_pred ceeCCeEEEEEEeCC
Q 047513 123 YLLFEHILQVHLIPP 137 (221)
Q Consensus 123 ~~l~gr~i~v~~a~~ 137 (221)
..++||.|+|.+-.|
T Consensus 80 ~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 80 MKVKGRAVKISGPSS 94 (95)
T ss_dssp SEETTEEEEEECCCC
T ss_pred eeeCCeEEEEeccCC
Confidence 999999999997543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=7.9e-07 Score=63.31 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc-----CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCcee
Q 047513 51 NKAAVLYIGRIRHGFYEKEMHAFFSQF-----GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLL 125 (221)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l 125 (221)
+..++|-+-|||..+++..|+.+...+ |.+..+.+..+. |-|+|+|.|...|-+|.-.|+|..|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----------~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----------NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----------TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----------CceEEEEccchhhHHHHhhcCCeee
Confidence 367899999999999999999999999 999999888875 4699999999999999889999999
Q ss_pred CCeEEEEEE
Q 047513 126 FEHILQVHL 134 (221)
Q Consensus 126 ~gr~i~v~~ 134 (221)
.|+.|+|.-
T Consensus 88 ~gr~Lr~gT 96 (117)
T 2l9w_A 88 QGKVIRSGT 96 (117)
T ss_dssp TTEEEEEEC
T ss_pred cCeEEEecC
Confidence 999999873
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=3.8e-05 Score=54.27 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCC-c----HHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGF-Y----EKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~-t----e~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
-+.+|+|.||+.++ . .+.++.+|..|+.+........-. -..|.|.+.++|.+|-..||+..++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----------Rirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----------RVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----------EEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----------EEEEEeCChHHHHHHHHHhccceec
Confidence 56789999998865 2 256799999999988876666532 4579999999999999999999999
Q ss_pred CeEEEEEEeCCCc
Q 047513 127 EHILQVHLIPPEH 139 (221)
Q Consensus 127 gr~i~v~~a~~~~ 139 (221)
|+.|+|.++.+..
T Consensus 73 g~~~r~YFgq~~~ 85 (104)
T 1wey_A 73 GKEMKLYFAQTLH 85 (104)
T ss_dssp TEECEEECCCCSS
T ss_pred CceeEEEecCCCC
Confidence 9999999998654
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.00092 Score=46.99 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc----c-CCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQ----F-GTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLF 126 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~----~-G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~ 126 (221)
...+|.|.|||+.+.++.|.-+|.. . |.|..+.... +-|+|+|.+...|++++. -..+.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~-k~~H~L~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLA-QADHELH 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHT-CSCCBSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhc-CCcceec
Confidence 4578999999999999999999987 2 5777776533 368999999999999984 3467889
Q ss_pred CeEEEEEEeCCCcccccccccc
Q 047513 127 EHILQVHLIPPEHVHLKLWRGF 148 (221)
Q Consensus 127 gr~i~v~~a~~~~~~~~~~~~~ 148 (221)
+..|.|....+.....-+..+-
T Consensus 73 ~~~LsV~P~~~~~~~r~ll~gl 94 (104)
T 2dhx_A 73 GAQLSLRPAPPRAPARLLLQGL 94 (104)
T ss_dssp SSBCEEEECCCCCCCCCCCCSC
T ss_pred CeEEEEEcCCCCCcceEeeecC
Confidence 9999999887776654444443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.48 E-value=0.0008 Score=46.46 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCC--CceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTG--KSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg--~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
++|.|++||+++|++++.+.++.+..+....+..... +. ..-.-|||.|.+.+++..-.+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~-----s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT-----SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC-----SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc-----CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999988877766665543 22 234779999999999999999999998753
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.21 E-value=0.0019 Score=44.91 Aligned_cols=56 Identities=18% Similarity=0.450 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
..+.++| ++|+.....||.++|+.||.| .|..+.|. .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------------eEEEEecCHHHHHHHHHhcc
Confidence 5567888 999999999999999999953 45666662 79999999999999998763
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0037 Score=45.18 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCC-eEE
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFE-HIL 130 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~g-r~i 130 (221)
..+.|.|-+.|+... ..+-.+|++||.|.+...... ..+-.|.|.++.+|++|| ..||..|+| -.|
T Consensus 23 ~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~-----------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mI 89 (119)
T 1wwh_A 23 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNT-----------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMI 89 (119)
T ss_dssp GGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSS-----------SSEEEEEESSHHHHHHHH-TTTTCEETTTEEC
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCC-----------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEE
Confidence 567888889999864 556678999999988776322 258899999999999999 569999985 667
Q ss_pred EEEEeC
Q 047513 131 QVHLIP 136 (221)
Q Consensus 131 ~v~~a~ 136 (221)
-|....
T Consensus 90 GV~p~~ 95 (119)
T 1wwh_A 90 GVKPCI 95 (119)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777654
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.88 E-value=0.00065 Score=51.09 Aligned_cols=36 Identities=19% Similarity=0.012 Sum_probs=29.1
Q ss_pred EEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCce
Q 047513 82 RLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYL 124 (221)
Q Consensus 82 ~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~ 124 (221)
.+.++.+ ...++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln-------~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILN-------GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEE-------CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEec-------CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 3556666 35689999999999999999998887643
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.0021 Score=44.84 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
...++| ++|+.....||..+|+.|| -..|..+.| ..|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET------------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC------------CeEEEEecCHHHHHHHHHhcc
Confidence 356777 9999999999999999999 345666665 279999999999999998764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.71 E-value=0.0027 Score=56.34 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=42.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHH
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVAD 118 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 118 (221)
..+.|+|. .|..+++.+|.++|++||.|.++.+-.+. | -|++|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-------g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-------G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-------S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-------C---eEEEEEeCCHHHHHHHHh
Confidence 44789997 79999999999999999999998776653 3 799999999999886653
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.50 E-value=0.003 Score=46.31 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEeec--------CcccccCCC-CceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKR-LRIARN--------KKLRVLNTG-KSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~--------~~~~~~~tg-~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
....|.|=+.|++.+.. +-+.|++||.|.+ +..... +. .....+ ....+-.|+|.++.+|.+|| ..|
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~-~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQD-RQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC------------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeecccccccccccccccc-ccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 44567777888876654 5567999999865 211110 00 000001 13468889999999999999 669
Q ss_pred CceeCCeEEEEEEeCCC
Q 047513 122 GYLLFEHILQVHLIPPE 138 (221)
Q Consensus 122 g~~l~gr~i~v~~a~~~ 138 (221)
|..|+|..|-|..+.+.
T Consensus 83 G~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TCEETTEECEEEECCHH
T ss_pred CeEeCcEEEEEEECCHH
Confidence 99999998888877543
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.92 E-value=0.0093 Score=41.45 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=50.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCC-CceeEEEEEECCHHHHHHHHHHhCCceeCC
Q 047513 53 AAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTG-KSKHFGFIEFNDPEVAEVVADAMHGYLLFE 127 (221)
Q Consensus 53 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg-~~~g~afV~f~~~~~a~~al~~l~g~~l~g 127 (221)
+-+|.|++||+.+|++++.+.++.+=.+....+.....+ .+ ..-.-|||.|.+.++...-.+.++|+.|-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s----~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS----LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS----SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 457999999999999998877776544333233222220 11 123678999999999999999999998753
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.84 E-value=0.0017 Score=48.49 Aligned_cols=111 Identities=13% Similarity=-0.123 Sum_probs=63.5
Q ss_pred CCCceeEEEEEECCHHHHHHHHHHh-CCceeCCeEEEEEEeCCCcccccccc---ccCCCCCCCchHHHHHHhhcccCCH
Q 047513 96 TGKSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQVHLIPPEHVHLKLWR---GFNCQYKPLDWVEVECKRLNKVRTL 171 (221)
Q Consensus 96 tg~~~g~afV~f~~~~~a~~al~~l-~g~~l~gr~i~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (221)
....+|+++|+|.+.+.|++|++.| ||..++| .|.+.++.+......... .........+...+....+....+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 4567899999999999999999999 9999999 999998865422111100 0011111122233344455555666
Q ss_pred HHHHHHHHHHHhHHHHH--HHHHHHcCccccCCccccc
Q 047513 172 EEHKKLMEKILKHDQKR--RKRIEAASIEYECPEIVGY 207 (221)
Q Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 207 (221)
++.......+.....-. ....+.+||+|...+....
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~ 125 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAAD 125 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHH
Confidence 66666665543211000 0013456666665554443
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.82 E-value=1.2 Score=39.92 Aligned_cols=56 Identities=18% Similarity=0.442 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhC
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMH 121 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (221)
.+..++|+ +|..+...+|.++|+.||.+ +|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------------CeEEEEECCHHHHHHHHHHHH
Confidence 45678886 88888999999999999953 5554444 369999999999999998885
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=87.31 E-value=0.029 Score=39.69 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=12.7
Q ss_pred cccCCccccCCCCCCCCCCCC---------CCCCCCcEEEEcCCCCCCcHHH
Q 047513 27 KDAADFLPLEGGPGRKLPEEK---------PLVNKAAVLYIGRIRHGFYEKE 69 (221)
Q Consensus 27 ~~~~~~~~l~g~~~r~~~~~~---------~~~~~~~~l~V~nLp~~~te~~ 69 (221)
.+.+++..+.|+++++.+... ......++|||+|||+++|++.
T Consensus 62 i~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 62 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred HHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 346788888888766532211 1122446799999999998764
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.14 E-value=22 Score=22.42 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=40.7
Q ss_pred EEEEcC-CCCCCcHHHHHHHHhccCC-----eeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCCceeCCe
Q 047513 55 VLYIGR-IRHGFYEKEMHAFFSQFGT-----IKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 128 (221)
Q Consensus 55 ~l~V~n-Lp~~~te~~L~~~F~~~G~-----i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g~~l~gr 128 (221)
++||+. --..+...+|-.++..-+. |-.|.+.. .|.||+-... .+..++..|++..+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------------~~s~v~v~~~-~~~~~~~~l~~~~i~g~ 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------------NASYVEILNG-KGPHVLKVMKNTTVKGK 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------------SCEEEEECTT-CHHHHHHHHTTCCC---
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------------CcEEEEECHH-HHHHHHHHhccccCcCc
Confidence 466642 2234677788888876543 34455533 3788887654 46678889999999999
Q ss_pred EEEEEEeC
Q 047513 129 ILQVHLIP 136 (221)
Q Consensus 129 ~i~v~~a~ 136 (221)
.+.|..+.
T Consensus 68 ~~~v~~~~ 75 (76)
T 2g0c_A 68 QLKVNKAN 75 (76)
T ss_dssp CCCEEECC
T ss_pred eEEEEECC
Confidence 99988753
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=58.92 E-value=0.008 Score=53.04 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=30.5
Q ss_pred HHHhhcccCCHHHHHHHHHHHHh-------HHHHHHHHHHHcCccccCCccccccCCCCc
Q 047513 161 ECKRLNKVRTLEEHKKLMEKILK-------HDQKRRKRIEAASIEYECPEIVGYVMPAPK 213 (221)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 213 (221)
++..+....+.++...++..+.. .+..+....+++||+|..++.+..++..-+
T Consensus 106 fV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 33444455566665555555432 222234456789999998877766654433
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.36 E-value=31 Score=26.09 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=37.4
Q ss_pred cEEEEcCCCC---------CCcHHHHHHHH--hccCCeeEEEEeecCcccccCCCCceeEEEEEECC-HHHHHHHH
Q 047513 54 AVLYIGRIRH---------GFYEKEMHAFF--SQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFND-PEVAEVVA 117 (221)
Q Consensus 54 ~~l~V~nLp~---------~~te~~L~~~F--~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~-~~~a~~al 117 (221)
.++.|-|+|. ..+...|.+.| +.|.++. +....++ .-..|+++|.|.+ ..--..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------SBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------CCCceeEEEEecCChHHHHHHH
Confidence 4566677776 13457899977 8998865 5555554 2368999999985 44444454
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.97 E-value=1.3e+02 Score=20.23 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHhCC-------ce
Q 047513 52 KAAVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAMHG-------YL 124 (221)
Q Consensus 52 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l~g-------~~ 124 (221)
.++-|-|-|+|..+-..++--.....|---+|..+. |.|.+.|.+.++...|+..|-+ ..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------------gqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------------SCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------------CeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 567888889999998888776667777655665433 5789999999999988876522 23
Q ss_pred eCCeEEEEEEeCCCccccccc
Q 047513 125 LFEHILQVHLIPPEHVHLKLW 145 (221)
Q Consensus 125 l~gr~i~v~~a~~~~~~~~~~ 145 (221)
+.|....|--..|.......|
T Consensus 78 irgqicdvistipedeeknyw 98 (129)
T 4eyt_A 78 IRGQICDVISTIPEDEEKNYW 98 (129)
T ss_dssp ETTEEEEEECCCCHHHHHHHH
T ss_pred EcceeeeeeecCCchhhhchh
Confidence 557777776666766655555
No 227
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=26.99 E-value=1.5e+02 Score=20.17 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=23.5
Q ss_pred eeEEEEEECCH---HHHHHHHHHhCCceeCCeEEEEE
Q 047513 100 KHFGFIEFNDP---EVAEVVADAMHGYLLFEHILQVH 133 (221)
Q Consensus 100 ~g~afV~f~~~---~~a~~al~~l~g~~l~gr~i~v~ 133 (221)
...-.|.|... +....|........+.|.+|++.
T Consensus 62 PRhIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 62 PRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred CCeEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 34666777654 44555666666788999999886
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.73 E-value=27 Score=28.29 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=27.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeec
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARN 88 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 88 (221)
....|+|||+.++..-|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 46789999999999999999876555666655554
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=26.30 E-value=58 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=27.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEeec
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIARN 88 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 88 (221)
..+.|+|||+.++..-|..++.. +.+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999877 66666655554
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.38 E-value=86 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=39.9
Q ss_pred CCCCCCcHHHHHHHHh----ccCCeeEEEEeecCcccccCCCCceeEEEEEECCHHHHHHHHHHh
Q 047513 60 RIRHGFYEKEMHAFFS----QFGTIKRLRIARNKKLRVLNTGKSKHFGFIEFNDPEVAEVVADAM 120 (221)
Q Consensus 60 nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (221)
..+.+.+--||..+|- .+|-|+.+.+...+. .....++++.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~------P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT------PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC------CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC------CccccccccccCCchhhhhhHHHH
Confidence 4455555557888874 478888887766553 445678899999999998887665
No 231
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.43 E-value=95 Score=19.20 Aligned_cols=22 Identities=14% Similarity=0.519 Sum_probs=16.2
Q ss_pred EEEEeecCcccccCCCCceeEEEEEECC
Q 047513 82 RLRIARNKKLRVLNTGKSKHFGFIEFND 109 (221)
Q Consensus 82 ~v~i~~~~~~~~~~tg~~~g~afV~f~~ 109 (221)
.++++.++. ..+.|+++|.|++
T Consensus 21 ~arlllnrR------ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR------PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC------CSSTTEEEEEETT
T ss_pred hhhhhhccC------CCcCceEEEEEec
Confidence 456666653 4568999999997
No 232
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.01 E-value=87 Score=24.71 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=24.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEee
Q 047513 54 AVLYIGRIRHGFYEKEMHAFFSQFGTIKRLRIAR 87 (221)
Q Consensus 54 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 87 (221)
..+.|+|+|+.++...|..++.....+..+.++.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 3688999999999998888887544454444443
Done!