BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047515
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 106 KSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK 165
K NV DH+S+YL V+D +SL +GW YA F L ++ Q Y V ++ + +FN +
Sbjct: 91 KGNNV-DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARE 146
Query: 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKE 202
+WGF F+PL D S GYLV+DT + AEV V++
Sbjct: 147 SDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 106 KSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK 165
K NV DH+S+YL VAD ++L +GW Y+ F L ++ Q + Y + ++ + +FN +
Sbjct: 90 KGNNV-DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARE 145
Query: 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKE 202
+WGF F+PL + + GYLV+DT + AEV V++
Sbjct: 146 SDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 109 NVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQ-DAMGKERRFNGVKLE 167
+V +H+SL+L VA L GW +A F + + N+D D + RF + +
Sbjct: 108 DVCNHLSLFLCVAHHEKLLPGWSHFAQFTIAV--SNKDPKKSKHSDTL---HRFWKKEHD 162
Query: 168 WGFDQFIPLEAFNDASNGYLVDDTCV-FGAEV-FVKERNIIKGECL 211
WG+ +FI L + G++ D C+ A+V ++ER CL
Sbjct: 163 WGWKKFIELPKLKE---GFIDDSGCLTIKAQVQVIRERVDRPFRCL 205
>sp|Q5RE06|ATX10_PONAB Ataxin-10 OS=Pongo abelii GN=ATXN10 PE=2 SV=1
Length = 476
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 66 AGKKFKN--SNRGRNKEEED-SSLFVCYNTHIIKLTGETCYINKSKNVK----DHISLYL 118
AGK+ N SN G + E D S++ + +H+I+L G CY NK K D I L L
Sbjct: 344 AGKETTNIFSNCGCVRAEGDISNVAEGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLIL 403
Query: 119 ---AVADTSSLTFGWEVYAV 135
++D++ W +YA+
Sbjct: 404 DNCNISDSNPFLTQWVIYAI 423
>sp|Q9UBB4|ATX10_HUMAN Ataxin-10 OS=Homo sapiens GN=ATXN10 PE=1 SV=1
Length = 475
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 66 AGKKFKN--SNRGRNKEEED-SSLFVCYNTHIIKLTGETCYINKSKNVK----DHISLYL 118
AGK+ N SN G + E D S++ + +H+I+L G CY NK K D I L L
Sbjct: 343 AGKETTNIFSNCGCVRAEGDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLIL 402
Query: 119 ---AVADTSSLTFGWEVYAV 135
++D++ W +YA+
Sbjct: 403 DNCNISDSNPFLTQWVIYAI 422
>sp|Q9ER24|ATX10_RAT Ataxin-10 OS=Rattus norvegicus GN=Atxn10 PE=1 SV=1
Length = 475
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 90 YNTHIIKLTGETCYINKSKNVK----DHISLYL---AVADTSSLTFGWEVYAV 135
+ +H+I+L G CY NK K D I L L + D + W VYAV
Sbjct: 370 FKSHLIRLIGNLCYKNKENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVYAV 422
>sp|Q4R4Y2|ATX10_MACFA Ataxin-10 OS=Macaca fascicularis GN=ATXN10 PE=2 SV=1
Length = 475
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 66 AGKKFKN--SNRGRNKEEED-SSLFVCYNTHIIKLTGETCYINKSKNVK----DHISLYL 118
GK+ N SN G + E D S++ + +H+I+L G CY NK K D I L L
Sbjct: 343 TGKETTNIFSNCGCVRAEGDISNVAEGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLIL 402
Query: 119 ---AVADTSSLTFGWEVYAV 135
++D++ W +YA+
Sbjct: 403 DNCNISDSNPFLTQWVIYAI 422
>sp|P28658|ATX10_MOUSE Ataxin-10 OS=Mus musculus GN=Atxn10 PE=1 SV=2
Length = 475
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 90 YNTHIIKLTGETCYINKSKNVK----DHISLYL---AVADTSSLTFGWEVYAV 135
+ +H+I+L G CY NK K D I L L + D + W VYAV
Sbjct: 370 FKSHLIRLIGNLCYKNKENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVYAV 422
>sp|A0JMG1|SPOLB_DANRE Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2
Length = 392
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 131 EVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVD 189
EV A F LL ++ AM +R + V+ +WGF +FI + D +NG L D
Sbjct: 97 EVRAKFKFSLLNAKREE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 152
Query: 190 DTCVFGAEVFVKERNI-IKGECLSMANITSSCKF------VWMGENFS 230
D EV V + ++ I G+ + C+ +W G F+
Sbjct: 153 DKLTLFCEVSVVQDSVNISGQSNTNMLKVPECQLSDDLGNLWEGSRFT 200
>sp|Q2TBW0|ATX10_BOVIN Ataxin-10 OS=Bos taurus GN=ATXN10 PE=2 SV=1
Length = 475
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 90 YNTHIIKLTGETCYINKSKNVK----DHISLYL---AVADTSSLTFGWEVYAV 135
+ +H+I+L G CY NK K D I L L + D++ W VYA+
Sbjct: 370 FKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDSCGLDDSNPFLTQWVVYAI 422
>sp|Q60MK8|UBP7_CAEBR Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis briggsae
GN=usp-7 PE=3 SV=1
Length = 1129
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 161 FNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSC 220
F+ +++WGF + + +GY++DD +I+ C A++ +
Sbjct: 132 FHNTEVDWGFSNYDQYDTLTSPKDGYVIDD--------------VIRLRCRFTADVPTGA 177
Query: 221 KFVW 224
++W
Sbjct: 178 NYMW 181
>sp|Q6GR09|SPOPL_XENLA Speckle-type POZ protein-like OS=Xenopus laevis GN=spopl PE=2 SV=1
Length = 392
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGECL 211
AM +R + V+ +WGF ++I + D +NG L DD EV V + +I I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKYIRRDFLLDEANGLLPDDKLTLYCEVSVVQDSINISGQSS 175
Query: 212 SMANITSSCK------FVWMGENFS 230
S C+ ++W F+
Sbjct: 176 SNNLKVPECRLAEDMGYLWENRRFT 200
>sp|C4LA32|SECA_TOLAT Protein translocase subunit SecA OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=secA PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 22 DYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNR 75
DYIV+ +E I+ +G A G +W +G Q IEAK G K +N N+
Sbjct: 325 DYIVK-------DDEVIIVDEHTGRTMA-GRRWSEGLHQAIEAKEGAKIRNENQ 370
>sp|Q7T330|SPOP_DANRE Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q5BL35|SPOLA_DANRE Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1
Length = 392
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 131 EVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVD 189
EV A F LL ++ AM +R + V+ +WGF +FI + D +NG L D
Sbjct: 97 EVRAKFKFSLLNAKREE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 152
Query: 190 DTCVFGAEVFVKERNI-IKGE 209
D EV V + ++ I G+
Sbjct: 153 DKLTLFCEVSVVQDSVNISGQ 173
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|O43791|SPOP_HUMAN Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q0VCW1|SPOP_BOVIN Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1
Length = 374
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 154 AMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNI-IKGE 209
AM +R + V+ +WGF +FI + D +NG L DD EV V + ++ I G+
Sbjct: 116 AMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ 173
>sp|Q2M2N2|SPOPL_MOUSE Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=3
Length = 392
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 131 EVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVD 189
EV A F LL ++ AM +R + V+ +WGF +FI + D +NG L D
Sbjct: 97 EVRAKFKFSLLNDKREE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 152
Query: 190 DTCVFGAEVFVKERNI 205
D EV V + ++
Sbjct: 153 DKLTLFCEVSVVQDSV 168
>sp|B2GBC9|UVRC_LACF3 UvrABC system protein C OS=Lactobacillus fermentum (strain NBRC
3956 / LMG 18251) GN=uvrC PE=3 SV=1
Length = 603
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 99 GETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKE 158
+ Y+ K+KN+K+ + Y + T + E A F + N++S+L+ + K
Sbjct: 27 AQIIYVGKAKNLKNRVRSYFKSSHTGKVAAMVEEVADFETIVTSSNKESFLLEITLIQKH 86
Query: 159 RRFNGVKLEWG 169
+ + +KL+ G
Sbjct: 87 QPYYNIKLKRG 97
>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1
Length = 392
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 131 EVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK-LEWGFDQFIPLEAFNDASNGYLVD 189
EV A F LL ++ AM +R + V+ +WGF +FI + D +NG L D
Sbjct: 97 EVRAKFKFSLLNAKREE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 152
Query: 190 DTCVFGAEVFVKERNI 205
D EV V + ++
Sbjct: 153 DKLTLFCEVSVVQDSV 168
>sp|Q7JKC3|UBP7_CAEEL Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis elegans
GN=usp-7 PE=2 SV=1
Length = 1135
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 161 FNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSC 220
F+ +++WGF + + + +GY+V+DT IK C A++ +
Sbjct: 135 FHNTEVDWGFSNYDQYDTLCNPKDGYVVNDT--------------IKLRCRFTADVPTGA 180
Query: 221 KFVW 224
++W
Sbjct: 181 NYMW 184
>sp|Q5FVB0|ATX10_XENTR Ataxin-10 OS=Xenopus tropicalis GN=atxn10 PE=2 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 90 YNTHIIKLTGETCYINKSKNVK----DHISLYL---AVADTSSLTFGWEVYAV 135
+ H+I+L G CY NK K D I+L L ++ D + W V+A+
Sbjct: 380 FKAHLIRLIGNLCYQNKENQEKVYQLDGIALILDNCSIDDNNPFLNQWAVFAI 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,463,858
Number of Sequences: 539616
Number of extensions: 3670774
Number of successful extensions: 7308
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 7301
Number of HSP's gapped (non-prelim): 39
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)