Query 047515
Match_columns 248
No_of_seqs 153 out of 1109
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 99.9 1.3E-26 2.8E-31 188.9 16.2 130 20-200 2-132 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1.9E-26 4.1E-31 187.8 15.1 125 22-199 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 99.9 3.6E-24 7.7E-29 174.7 14.2 132 18-200 2-136 (139)
4 cd03773 MATH_TRIM37 Tripartite 99.9 1E-22 2.2E-27 163.9 12.9 127 18-199 2-130 (132)
5 cd00270 MATH_TRAF_C Tumor Necr 99.9 2.1E-22 4.7E-27 165.3 11.7 133 21-198 1-148 (149)
6 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.5E-21 3.3E-26 161.2 10.4 134 21-199 1-147 (147)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 4.8E-21 1E-25 160.4 12.7 135 21-198 1-147 (148)
8 cd00121 MATH MATH (meprin and 99.9 1.9E-20 4.1E-25 144.4 14.7 125 21-199 1-126 (126)
9 cd03781 MATH_TRAF4 Tumor Necro 99.8 1.1E-20 2.4E-25 157.9 12.9 133 21-198 1-153 (154)
10 cd03779 MATH_TRAF1 Tumor Necro 99.8 3.6E-20 7.7E-25 155.2 11.9 135 21-198 1-146 (147)
11 PF00917 MATH: MATH domain; I 99.8 2.1E-20 4.6E-25 145.0 9.7 118 27-200 1-119 (119)
12 cd03777 MATH_TRAF3 Tumor Necro 99.8 7.5E-20 1.6E-24 158.6 13.6 137 18-199 36-184 (186)
13 cd03771 MATH_Meprin Meprin fam 99.8 9.7E-19 2.1E-23 149.5 13.3 132 21-198 2-166 (167)
14 cd03778 MATH_TRAF2 Tumor Necro 99.8 6.7E-19 1.5E-23 150.1 12.0 138 17-198 15-163 (164)
15 smart00061 MATH meprin and TRA 99.7 5.1E-17 1.1E-21 121.0 11.3 94 23-174 2-95 (95)
16 COG5077 Ubiquitin carboxyl-ter 99.7 3.9E-17 8.4E-22 163.7 5.9 133 17-203 35-174 (1089)
17 cd03783 MATH_Meprin_Alpha Mepr 99.5 5.1E-14 1.1E-18 120.5 9.8 134 21-198 2-166 (167)
18 cd03782 MATH_Meprin_Beta Mepri 99.4 8.5E-13 1.8E-17 112.9 10.7 132 21-198 2-166 (167)
19 KOG1987 Speckle-type POZ prote 99.0 2.8E-09 6E-14 96.4 12.4 162 23-247 6-187 (297)
20 KOG1863 Ubiquitin carboxyl-ter 98.5 8.9E-08 1.9E-12 101.9 4.6 132 19-205 25-157 (1093)
21 KOG0297 TNF receptor-associate 90.0 0.21 4.6E-06 48.2 2.5 82 19-143 278-365 (391)
22 cd03777 MATH_TRAF3 Tumor Necro 47.9 8.8 0.00019 33.4 1.0 31 218-248 37-76 (186)
23 COG5077 Ubiquitin carboxyl-ter 32.1 19 0.00042 38.3 0.7 28 219-247 38-65 (1089)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=1.3e-26 Score=188.89 Aligned_cols=130 Identities=18% Similarity=0.325 Sum_probs=108.5
Q ss_pred CcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccc
Q 047515 20 PADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTG 99 (248)
Q Consensus 20 ~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~ 99 (248)
.++|+|+|+|||.+. +.++|++|.+||++|+| .+| |
T Consensus 2 ~~~~~~~I~~~S~l~-----e~~~S~~f~vgG~~W~i----------------------------~~~---P-------- 37 (137)
T cd03772 2 EATFSFTVERFSRLS-----ESVLSPPCFVRNLPWKI----------------------------MVM---P-------- 37 (137)
T ss_pred CcEEEEEECCcccCC-----CcEECCCEEECCcceEE----------------------------EEE---e--------
Confidence 579999999999993 57999999999999999 777 8
Q ss_pred eeecccccC-CCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchh
Q 047515 100 ETCYINKSK-NVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEA 178 (248)
Q Consensus 100 ~~~~G~~~~-~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~ 178 (248)
+|+... ...++|||||.|.+.. ....|++.|+|+|+|+||+++....... ..+.|.....+|||.+||+|++
T Consensus 38 ---~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~ 110 (137)
T cd03772 38 ---RNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSE 110 (137)
T ss_pred ---CCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHH
Confidence 775421 2348999999997643 3348999999999999998644433332 5578977778999999999999
Q ss_pred hccCCCCceeCCEEEEEEEEEE
Q 047515 179 FNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 179 L~~~~~gfLvnD~l~i~a~V~V 200 (248)
|+++++|||+||+|+|+|+|.|
T Consensus 111 L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 111 VTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred hcCCCCCcEECCEEEEEEEEEe
Confidence 9988899999999999999998
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=1.9e-26 Score=187.78 Aligned_cols=125 Identities=28% Similarity=0.463 Sum_probs=106.7
Q ss_pred EEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccccee
Q 047515 22 DYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGET 101 (248)
Q Consensus 22 ~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~ 101 (248)
+|+|+|+|||.+. +.+.|++|.+|||.|+| .+| |
T Consensus 2 ~f~w~I~~fS~~~-----~~~~S~~F~vGG~~W~l----------------------------~~y---P---------- 35 (134)
T cd03775 2 SFTWRIKNWSELE-----KKVHSPKFKCGGFEWRI----------------------------LLF---P---------- 35 (134)
T ss_pred cEEEEECCcccCC-----cceeCCCEEECCeeEEE----------------------------EEe---C----------
Confidence 6999999999974 58999999999999999 777 9
Q ss_pred ecccccCCCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCch
Q 047515 102 CYINKSKNVKDHISLYLAVADTSS----LTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLE 177 (248)
Q Consensus 102 ~~G~~~~~~~~~lSlyL~~~~~~~----~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~ 177 (248)
+|+.. .+||||||.+++.+. .+.+|.+.|+|.|+|+||.++....... ..++|+....+|||.+||+++
T Consensus 36 -~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~ 108 (134)
T cd03775 36 -QGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELR 108 (134)
T ss_pred -CCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHH
Confidence 88642 689999999976543 2568999999999999998776544332 678998877899999999999
Q ss_pred hhccC----CCCceeCCEEEEEEEEE
Q 047515 178 AFNDA----SNGYLVDDTCVFGAEVF 199 (248)
Q Consensus 178 ~L~~~----~~gfLvnD~l~i~a~V~ 199 (248)
+|++| ++|||+||+|+|+++|+
T Consensus 109 ~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 109 KLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred HHcccccCCCCceeECCEEEEEEEEC
Confidence 99965 57999999999999984
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.92 E-value=3.6e-24 Score=174.70 Aligned_cols=132 Identities=28% Similarity=0.384 Sum_probs=108.1
Q ss_pred CCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515 18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI 94 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~ 94 (248)
.++.+|+|+|+|||.+.+ ..++.+.|++|.+||+ +|+| .+| |
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l----------------------------~~y---P--- 46 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCL----------------------------RVN---P--- 46 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEE----------------------------EEe---C---
Confidence 356789999999999875 3457999999999995 9999 777 9
Q ss_pred ccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515 95 IKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI 174 (248)
Q Consensus 95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi 174 (248)
+|+.. +..+|+||||.+++.. .+.+.|+|+|.|+||+++....... ...+.|.. ..+|||.+||
T Consensus 47 --------~G~~~-~~~~~iSlyL~l~~~~----~~~v~a~f~~~l~n~~~~~~~~~~~--~~~~~f~~-~~~wG~~~fi 110 (139)
T cd03774 47 --------KGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFI 110 (139)
T ss_pred --------CCCCC-CCCCeEEEEEEEccCC----CCcEEEEEEEEEEecCCCeeeeecc--cCcEeCCC-CCccCHHHee
Confidence 88653 3568999999997532 3679999999999999765432221 13577864 5789999999
Q ss_pred CchhhccCCCCceeCCEEEEEEEEEE
Q 047515 175 PLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 175 ~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
++++|.++.+|||+||+++|+|+|.|
T Consensus 111 ~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 111 RRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred eHHHhhhhhcccccCCEEEEEEEEEE
Confidence 99999988889999999999999998
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.89 E-value=1e-22 Score=163.87 Aligned_cols=127 Identities=18% Similarity=0.331 Sum_probs=102.8
Q ss_pred CCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccc
Q 047515 18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKL 97 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~ 97 (248)
++-.+++|+|.|||.+++. ++.++|++|.+||++|+| .+| |
T Consensus 2 ~~~~~~~~~I~~fS~~~~~--~~~~~S~~F~vgG~~W~i----------------------------~~y---P------ 42 (132)
T cd03773 2 PPYDSATFTLENFSTLRQS--ADPVYSDPLNVDGLCWRL----------------------------KVY---P------ 42 (132)
T ss_pred CCCcccEEEECChhhhhcC--CcceeCCCeEeCCccEEE----------------------------EEE---C------
Confidence 3556799999999999652 368999999999999999 888 9
Q ss_pred cceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCch
Q 047515 98 TGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLE 177 (248)
Q Consensus 98 ~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~ 177 (248)
+|+.. ...+|||+||.+.+. ..|.+.++|+|+|+||.++....... ..+.|.. ..+|||.+|++++
T Consensus 43 -----~G~~~-~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~ 108 (132)
T cd03773 43 -----DGNGE-VRGNFLSVFLELCSG----LGEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLD 108 (132)
T ss_pred -----CCCCC-CCCCEEEEEEEeecC----CCCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHH
Confidence 88653 346899999998753 23678899999999996555444332 5677865 5679999999999
Q ss_pred hhccCCCCceeC--CEEEEEEEEE
Q 047515 178 AFNDASNGYLVD--DTCVFGAEVF 199 (248)
Q Consensus 178 ~L~~~~~gfLvn--D~l~i~a~V~ 199 (248)
+|.+ +|||+| |+|+|+|.|+
T Consensus 109 ~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 109 LLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred HHhh--CCCcCCCCCEEEEEEEEe
Confidence 9974 799999 9999999985
No 5
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=2.1e-22 Score=165.28 Aligned_cols=133 Identities=26% Similarity=0.376 Sum_probs=102.0
Q ss_pred cEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515 21 ADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII 95 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~ 95 (248)
++|+|+|++||.+++. +.++.++|++|.+| ||+|+| .+| |
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i----------------------------~~y---P---- 45 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCL----------------------------RLY---L---- 45 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---e----
Confidence 5899999999999762 33478999999999 999999 777 9
Q ss_pred cccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCC--ceeEEec--cCCceeEec-----CCC
Q 047515 96 KLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQD--SYLVVQD--AMGKERRFN-----GVK 165 (248)
Q Consensus 96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~--~~~~~~~--~~~~~~~F~-----~~~ 165 (248)
+|+.. ...+||||||.+.+... ....|.+.|+|+|.|+||.++ ....... .....+.|. ...
T Consensus 46 -------~G~~~-~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 117 (149)
T cd00270 46 -------NGDGT-GKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENN 117 (149)
T ss_pred -------CCCCC-CCCCEEEEEEEEeccCCCccccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCC
Confidence 88643 34579999999976543 235799999999999999874 2221110 001123454 145
Q ss_pred CCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
.+|||.+|+++++|++ .|||+||+|+|+|+|
T Consensus 118 ~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v 148 (149)
T cd00270 118 IGFGYPEFVPLEKLES--RGYVKDDTLFIKVEV 148 (149)
T ss_pred CCcCcceEeEHHHhcc--CCCEeCCEEEEEEEE
Confidence 7899999999999984 589999999999998
No 6
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.86 E-value=1.5e-21 Score=161.19 Aligned_cols=134 Identities=20% Similarity=0.272 Sum_probs=101.6
Q ss_pred cEEEEEEcCcccccc-cccce--EEEcCcEEE--cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515 21 ADYIVRIKSYSLLAE-EAIVE--KYESGAFQA--RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII 95 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~-~~~~~--~~~S~~F~v--gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~ 95 (248)
++|+|+|.|||.+++ .+.++ .++|++|.+ |||+|+| .+| |
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i----------------------------~~y---P---- 45 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCA----------------------------RLN---L---- 45 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---e----
Confidence 579999999998765 34445 488999996 7999999 788 9
Q ss_pred cccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEe--ccCCceeEecC-----CCCC
Q 047515 96 KLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQ--DAMGKERRFNG-----VKLE 167 (248)
Q Consensus 96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~--~~~~~~~~F~~-----~~~~ 167 (248)
+|... +..+|||+||.+.+... ...+|.+.|+|+|.|++|.++...... ......+.|.. .+..
T Consensus 46 -------~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~ 117 (147)
T cd03776 46 -------SLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKG 117 (147)
T ss_pred -------CCCCC-CCCCEEEEEEEEeccCCCcccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCC
Confidence 88754 35689999999976432 234799999999999999864332111 11112345752 3468
Q ss_pred CcccccCCchhhccCCCCceeCCEEEEEEEEE
Q 047515 168 WGFDQFIPLEAFNDASNGYLVDDTCVFGAEVF 199 (248)
Q Consensus 168 wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~ 199 (248)
|||.+||++++|+. .+||+||+++|+|+|.
T Consensus 118 ~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 118 FGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred eeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 99999999999984 5899999999999983
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.86 E-value=4.8e-21 Score=160.38 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=105.4
Q ss_pred cEEEEEEcCccccccc-ccce--EEEcCcE--EEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515 21 ADYIVRIKSYSLLAEE-AIVE--KYESGAF--QARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII 95 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~-~~~~--~~~S~~F--~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~ 95 (248)
++|.|+|++||.+++. +.++ .+.|++| .++||+|+| .+| |
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i----------------------------~~y---p---- 45 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCA----------------------------RAY---L---- 45 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEE----------------------------EEE---c----
Confidence 5899999999999754 4455 7999999 999999999 888 9
Q ss_pred cccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeE--EeccCCceeEecCC----CCCC
Q 047515 96 KLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLV--VQDAMGKERRFNGV----KLEW 168 (248)
Q Consensus 96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~--~~~~~~~~~~F~~~----~~~w 168 (248)
+|..+ +..+|||+||.++..+.. ...|.+.++++|.|++|.+....+ ........+.|... +..|
T Consensus 46 -------nG~~~-~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~ 117 (148)
T cd03780 46 -------NGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIAS 117 (148)
T ss_pred -------CCCCC-CCCCEEEEEEEEecCccccccCcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCc
Confidence 88764 356899999999864322 247999999999999998543321 11100124668654 5679
Q ss_pred cccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 169 GFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 169 G~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
|+.+||++++|+..+.+||.||++.|+|.|
T Consensus 118 G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 118 GCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred ChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999999998655799999999999987
No 8
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.85 E-value=1.9e-20 Score=144.36 Aligned_cols=125 Identities=31% Similarity=0.428 Sum_probs=99.1
Q ss_pred cEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccce
Q 047515 21 ADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGE 100 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~ 100 (248)
.+|+|+|.+|+.... +.++|+.|.++|++|+| .+| |
T Consensus 1 ~~~~~~i~~~~~~~~----~~~~S~~f~~~g~~W~l----------------------------~~~---p--------- 36 (126)
T cd00121 1 GKHTWKIVNFSELEG----ESIYSPPFEVGGYKWRI----------------------------RIY---P--------- 36 (126)
T ss_pred CEEEEEECCCCCCCC----cEEECCCEEEcCEeEEE----------------------------EEE---c---------
Confidence 478999999999322 68999999999999999 888 8
Q ss_pred eecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEec-CCCCCCcccccCCchhh
Q 047515 101 TCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFN-GVKLEWGFDQFIPLEAF 179 (248)
Q Consensus 101 ~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~Fi~~~~L 179 (248)
+|... ..+|||+||.|.+.......|.+.|+|+|.|+|+++....... ..+.|. ....+|||.+|+++++|
T Consensus 37 --~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l 108 (126)
T cd00121 37 --NGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDL 108 (126)
T ss_pred --CCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHh
Confidence 66542 4679999999987654446799999999999999833332222 334443 55689999999999999
Q ss_pred ccCCCCceeCCEEEEEEEEE
Q 047515 180 NDASNGYLVDDTCVFGAEVF 199 (248)
Q Consensus 180 ~~~~~gfLvnD~l~i~a~V~ 199 (248)
++ .++++||+|+|+|+|.
T Consensus 109 ~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 109 ED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cc--CCcEECCEEEEEEEEC
Confidence 95 3349999999999983
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.85 E-value=1.1e-20 Score=157.94 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=101.9
Q ss_pred cEEEEEEcCccccccc--c-cceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515 21 ADYIVRIKSYSLLAEE--A-IVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII 95 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~--~-~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~ 95 (248)
++|.|+|+|||.+++. + .++.+.|++|.+| ||.|+| .+| |
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P---- 45 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQV----------------------------SAF---L---- 45 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEE----------------------------EEE---C----
Confidence 5799999999999874 2 3578999999999 999999 888 9
Q ss_pred cccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCC--ce--eEEec--cCCceeEec------
Q 047515 96 KLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQD--SY--LVVQD--AMGKERRFN------ 162 (248)
Q Consensus 96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~--~~--~~~~~--~~~~~~~F~------ 162 (248)
+|..+ ...+|||+||.++..+... ..|.+.|+++|+|++|.+. .. ..... .......|.
T Consensus 46 -------nG~~~-~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~ 117 (154)
T cd03781 46 -------NGNGS-GEGSHLSVYIRVLPGEYDNLLEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASR 117 (154)
T ss_pred -------CCCCC-CCCCEEEEEEEEecCCcccccCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccc
Confidence 88754 3568999999998743322 4799999999999999864 11 11000 001133454
Q ss_pred --CCCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 163 --GVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 163 --~~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
..+.+|||..||++++|+ +.+||+||+++|+|.|
T Consensus 118 ~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v 153 (154)
T cd03781 118 LDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV 153 (154)
T ss_pred cCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence 234579999999999998 4789999999999987
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.83 E-value=3.6e-20 Score=155.25 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=103.4
Q ss_pred cEEEEEEcCccccccccc-c--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515 21 ADYIVRIKSYSLLAEEAI-V--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII 95 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~~~-~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~ 95 (248)
++|.|+|+||+.+.+++. + ..++||+|+.. ||+|+| .+| |
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i----------------------------~~y---p---- 45 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCL----------------------------RLY---L---- 45 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---c----
Confidence 589999999997766654 2 37999999987 999999 888 9
Q ss_pred cccceeecccccCCCCCcEEEEEEecCCC-CCCCCCEEEEEEEEEEEecCCCceeE-EeccCCceeEec----CCCCCCc
Q 047515 96 KLTGETCYINKSKNVKDHISLYLAVADTS-SLTFGWEVYAVFCLFLLYQNQDSYLV-VQDAMGKERRFN----GVKLEWG 169 (248)
Q Consensus 96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~-~~~~~W~v~a~f~l~llnq~~~~~~~-~~~~~~~~~~F~----~~~~~wG 169 (248)
+|... ..++|+|+||.++..+ .....|.+.++++|.|++|.+..... ........+.|. ..+..||
T Consensus 46 -------nG~~~-~~~~~iSv~l~l~~g~~D~~l~wpv~~~~tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G 117 (147)
T cd03779 46 -------NGDGA-GKGTHISLFFVIMKGEYDALLPWPFRHKVTFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASG 117 (147)
T ss_pred -------CCCCC-CCCCEEEEEEEEecCCcccccCcceEEEEEEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcc
Confidence 88764 3578999999998643 12237999999999999997644311 111000135686 3456799
Q ss_pred ccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 170 FDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 170 ~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
+.+||++++|+..+.+||.||+++|+|+|
T Consensus 118 ~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 118 CPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred hhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 99999999998544599999999999987
No 11
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=2.1e-20 Score=144.96 Aligned_cols=118 Identities=32% Similarity=0.482 Sum_probs=96.0
Q ss_pred EcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceeecccc
Q 047515 27 IKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINK 106 (248)
Q Consensus 27 I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~~G~~ 106 (248)
|+|||.+++. ...+.|+.|.++|++|+| .+| | +|+
T Consensus 1 i~nfs~l~~~--~~~~~s~~~~~~g~~W~l----------------------------~~~---~-----------~~~- 35 (119)
T PF00917_consen 1 IKNFSKLKEG--EEYSSSFVFSHGGYPWRL----------------------------KVY---P-----------KGN- 35 (119)
T ss_dssp ETTGGGHHTS--EEEEEEEESSTTSEEEEE----------------------------EEE---T-----------TES-
T ss_pred CcccceEeCC--CcEECCCeEEECCEEEEE----------------------------EEE---e-----------CCC-
Confidence 7899999843 135556999999999999 888 8 553
Q ss_pred cCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchhhccCCCC
Q 047515 107 SKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNG 185 (248)
Q Consensus 107 ~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g 185 (248)
+++||+||.|..++... ..|+|.|++++.|+++.++...... ..+.|+. ..+|||.+|++|++|.++.
T Consensus 36 ----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~F~~-~~~~g~~~fi~~~~l~~~~-- 104 (119)
T PF00917_consen 36 ----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRI----KSHSFNN-PSSWGWSSFISWEDLEDPY-- 104 (119)
T ss_dssp ----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEE----ECEEECT-TSEEEEEEEEEHHHHTTCT--
T ss_pred ----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeee----eeeEEee-ecccchhheeEHHHhCccC--
Confidence 57999999999875543 5899999999999999988744321 2488975 4889999999999999643
Q ss_pred ceeCCEEEEEEEEEE
Q 047515 186 YLVDDTCVFGAEVFV 200 (248)
Q Consensus 186 fLvnD~l~i~a~V~V 200 (248)
||.||+++|+|+|.|
T Consensus 105 fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 105 FLVDDSLTIEVEVKI 119 (119)
T ss_dssp TSBTTEEEEEEEEEE
T ss_pred CeECCEEEEEEEEEC
Confidence 999999999999986
No 12
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.83 E-value=7.5e-20 Score=158.57 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCCcEEEEEEcCccccccc-ccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515 18 VPPADYIVRIKSYSLLAEE-AIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT 92 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~ 92 (248)
...++|.|+|.|||.+++. +.++ .++||+|+++ ||+|+| .+| |
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i----------------------------~~y---p- 83 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L- 83 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEE----------------------------EEE---c-
Confidence 3479999999999998754 3344 7999999999 999999 888 9
Q ss_pred ccccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEec-CC---C
Q 047515 93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFN-GV---K 165 (248)
Q Consensus 93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~-~~---~ 165 (248)
+|+.. ..++|||+||.++..+. ....|.+.++++|.|++|.+........ .......|. +. +
T Consensus 84 ----------nG~g~-~~~~~iSvyl~L~~ge~D~~L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n 152 (186)
T cd03777 84 ----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 152 (186)
T ss_pred ----------CCCCC-CCCCEEEEEEEEecCCcccccCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCC
Confidence 88764 35789999999986432 2237999999999999997522111110 001235576 33 5
Q ss_pred CCCcccccCCchhhccCCCCceeCCEEEEEEEEE
Q 047515 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVF 199 (248)
Q Consensus 166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~ 199 (248)
..||+..||++++|+ +.+||.||++.|+|.|.
T Consensus 153 ~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 153 IASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred CCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 679999999999998 47899999999999874
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.79 E-value=9.7e-19 Score=149.49 Aligned_cols=132 Identities=17% Similarity=0.249 Sum_probs=98.5
Q ss_pred cEEEEEEcCccccc-ccccceEEEcCcE-EEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515 21 ADYIVRIKSYSLLA-EEAIVEKYESGAF-QARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT 98 (248)
Q Consensus 21 ~~~~w~I~~fS~l~-~~~~~~~~~S~~F-~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~ 98 (248)
.+|+|+|.|||.++ +.+.++.++||+| .+|||+|+| .+| |
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I----------------------------~~Y---P------- 43 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQV----------------------------GLY---P------- 43 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEE----------------------------EEE---e-------
Confidence 57899999999996 4555679999999 999999999 888 9
Q ss_pred ceeecccccCCCCCcEEEEEEecCCCC-CCCCCE-EEEEEEEEEEecCCC---ceeEE----eccCC-c----eeEec--
Q 047515 99 GETCYINKSKNVKDHISLYLAVADTSS-LTFGWE-VYAVFCLFLLYQNQD---SYLVV----QDAMG-K----ERRFN-- 162 (248)
Q Consensus 99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~-v~a~f~l~llnq~~~---~~~~~----~~~~~-~----~~~F~-- 162 (248)
+|+.. ..+||||||.+.+.+. ....|. +.|+++|+|++|..+ ..+.. .+... . ...|.
T Consensus 44 ----nG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP 117 (167)
T cd03771 44 ----NGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRP 117 (167)
T ss_pred ----CCCCC--CCCcceEEEEEecCCccccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCC
Confidence 88764 4689999999986433 345799 589999999999731 11111 11000 0 01121
Q ss_pred --------C-------CCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 163 --------G-------VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 163 --------~-------~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
. .+.+|||..||++++|.. .+||.||+|.|++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~dtl~i~~~~ 166 (167)
T cd03771 118 SKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGDDLIILLDF 166 (167)
T ss_pred ccccccccccccccccccCccccccceeHHHhcc--CCCCcCCEEEEEEEe
Confidence 1 235899999999999995 669999999999887
No 14
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.79 E-value=6.7e-19 Score=150.13 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=105.5
Q ss_pred cCCCcEEEEEEcCccccccccc-c--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515 17 HVPPADYIVRIKSYSLLAEEAI-V--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN 91 (248)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~~~-~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P 91 (248)
...+++|+|+|+|||.+.+.+. + ..++||+|+.+ |++|++ .+| |
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l----------------------------~~y---l 63 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L 63 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEE----------------------------EEE---e
Confidence 3458999999999999887653 2 37999999875 899999 888 8
Q ss_pred cccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEec-cCCceeEe----cCCC
Q 047515 92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQD-AMGKERRF----NGVK 165 (248)
Q Consensus 92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~-~~~~~~~F----~~~~ 165 (248)
+|+.. ..+.|||+||.+++.+... ..|.+..+++|.|++|++..+....- .......| +..+
T Consensus 64 -----------nG~g~-~~g~~LSly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n 131 (164)
T cd03778 64 -----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMN 131 (164)
T ss_pred -----------CCCCC-CCCCEEEEEEEEecCCcCcccCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccc
Confidence 88653 3467999999999876554 68999999999999998644332110 00011124 2235
Q ss_pred CCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
..|||..|+++++|..+ .|||+||++.|+|.|
T Consensus 132 ~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 132 IASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred cCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 67999999999999853 699999999999987
No 15
>smart00061 MATH meprin and TRAF homology.
Probab=99.73 E-value=5.1e-17 Score=121.00 Aligned_cols=94 Identities=29% Similarity=0.435 Sum_probs=78.7
Q ss_pred EEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceee
Q 047515 23 YIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETC 102 (248)
Q Consensus 23 ~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~ 102 (248)
++|.|++|+.+.+. +.++|++|.++|++|+| .+| |
T Consensus 2 ~~~~~~~~~~~~~~---~~~~S~~f~~~g~~W~i----------------------------~~~---p----------- 36 (95)
T smart00061 2 LSHTFKNVSRLEEG---ESYFSPSEEHFNIPWRL----------------------------KIY---R----------- 36 (95)
T ss_pred ceeEEEchhhcccC---ceEeCChhEEcCceeEE----------------------------EEE---E-----------
Confidence 58999999998543 68999999999999999 888 8
Q ss_pred cccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515 103 YINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI 174 (248)
Q Consensus 103 ~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi 174 (248)
+ .+|||+||.|.+....+..|++.|+|+|.|+||+++.... . ..+.|.. ..+|||.+||
T Consensus 37 ~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~~~-~----~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 37 K-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSLSK-K----DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred c-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEEee-e----eeEEEcC-CCccceeeEC
Confidence 3 5799999999876544458999999999999999865522 1 6788986 7889999986
No 16
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.9e-17 Score=163.66 Aligned_cols=133 Identities=26% Similarity=0.417 Sum_probs=112.4
Q ss_pred cCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccc
Q 047515 17 HVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIK 96 (248)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~ 96 (248)
+....+|+|+|++||.+.+ +++||+|.+||+.|+| .++ |
T Consensus 35 e~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki----------------------------~lf---P----- 73 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKI----------------------------ILF---P----- 73 (1089)
T ss_pred HHhhcccceecCChhhhhh-----hccCCcccccCeeEEE----------------------------EEe---c-----
Confidence 3356799999999999985 6999999999999999 888 9
Q ss_pred ccceeecccccCCCCCcEEEEEEecCCCC--CC-CCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCccccc
Q 047515 97 LTGETCYINKSKNVKDHISLYLAVADTSS--LT-FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQF 173 (248)
Q Consensus 97 ~~~~~~~G~~~~~~~~~lSlyL~~~~~~~--~~-~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~F 173 (248)
+|+. +.+ .|+||+....+. .+ ..|.|+|||.|.|-|...|+...... ++|+|+....+|||++|
T Consensus 74 ------qG~n---q~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f 140 (1089)
T COG5077 74 ------QGNN---QCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNF 140 (1089)
T ss_pred ------ccCC---ccc-cEEEEEeccchhhhhcCcchhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhh
Confidence 8874 223 999999875432 22 35999999999999998877654433 89999999999999999
Q ss_pred CCchhhccCCCC---ceeCCEEEEEEEEEE-eec
Q 047515 174 IPLEAFNDASNG---YLVDDTCVFGAEVFV-KER 203 (248)
Q Consensus 174 i~~~~L~~~~~g---fLvnD~l~i~a~V~V-k~~ 203 (248)
+.+..|..|+.| |+.+|++.|.|+|+| +++
T Consensus 141 ~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 141 IDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred hhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 999999988776 899999999999999 775
No 17
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.52 E-value=5.1e-14 Score=120.48 Aligned_cols=134 Identities=16% Similarity=0.303 Sum_probs=98.6
Q ss_pred cEEEEEEcCccccccccc-ceEEEcCcEEEc-ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515 21 ADYIVRIKSYSLLAEEAI-VEKYESGAFQAR-GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT 98 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~~~-~~~~~S~~F~vg-G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~ 98 (248)
..++|+|.||+.+.+++. ...++||+|+.. |++.++ .+| |
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l----------------------------~~~---l------- 43 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGV----------------------------SLY---P------- 43 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEE----------------------------EEE---e-------
Confidence 468999999999877653 468999999885 999999 888 8
Q ss_pred ceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEEEEEEecCC---CceeE----EeccCCc------eeEecC
Q 047515 99 GETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVY-AVFCLFLLYQNQ---DSYLV----VQDAMGK------ERRFNG 163 (248)
Q Consensus 99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~-a~f~l~llnq~~---~~~~~----~~~~~~~------~~~F~~ 163 (248)
+|+..+..+.|||||++++..+.. -..|.+. -+++|.|++|+. ...+. ..+.... ...|..
T Consensus 44 ----ng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~r 119 (167)
T cd03783 44 ----LSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDR 119 (167)
T ss_pred ----cCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccC
Confidence 776533457899999999976543 3579964 599999999963 11111 1110001 011322
Q ss_pred --------------CCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 164 --------------VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 164 --------------~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
.+.++||..|++.+.|.. .+||.||++.|.+++
T Consensus 120 P~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDtlfI~~~~ 166 (167)
T cd03783 120 PSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDDLIIFVDF 166 (167)
T ss_pred CcccccccccccccCCcccccccceeHHHHhh--CCcccCCeEEEEEec
Confidence 246899999999999994 889999999998875
No 18
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.43 E-value=8.5e-13 Score=112.86 Aligned_cols=132 Identities=14% Similarity=0.257 Sum_probs=98.1
Q ss_pred cEEEEEEcCcccccccc-cceEEEcCcEEE-cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515 21 ADYIVRIKSYSLLAEEA-IVEKYESGAFQA-RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT 98 (248)
Q Consensus 21 ~~~~w~I~~fS~l~~~~-~~~~~~S~~F~v-gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~ 98 (248)
.+|+|+|.||+.+.+++ ....++||+|+. .|++.++ .+| |
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l----------------------------~~y---l------- 43 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQV----------------------------GLY---L------- 43 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEE----------------------------EEE---e-------
Confidence 57999999999887763 246899999976 5999999 888 8
Q ss_pred ceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEEEEEEecCC---CceeEEe------ccCCc-eeEe--cCC
Q 047515 99 GETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVY-AVFCLFLLYQNQ---DSYLVVQ------DAMGK-ERRF--NGV 164 (248)
Q Consensus 99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~-a~f~l~llnq~~---~~~~~~~------~~~~~-~~~F--~~~ 164 (248)
+|+.. .+.|||||++++..+.. .-.|.+. -+++|.|++|+. .+.++.. +.... ...| ...
T Consensus 44 ----nG~g~--~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP 117 (167)
T cd03782 44 ----NGTDD--YPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDP 117 (167)
T ss_pred ----cCCCC--CCCEEEEEEEEeccCCCccccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCC
Confidence 88764 36799999999975533 3579999 899999999963 2222111 00001 1134 211
Q ss_pred -----------------CCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515 165 -----------------KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198 (248)
Q Consensus 165 -----------------~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V 198 (248)
+.++||+.|++.+.|.. +.||.||++.|-.++
T Consensus 118 ~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD~ifi~~~~ 166 (167)
T cd03782 118 RKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGDDVIFLLTM 166 (167)
T ss_pred cccCcccccccccccccccccCccceeeHHHHhh--cCcccCCeEEEEEec
Confidence 57899999999999994 789999999987665
No 19
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.04 E-value=2.8e-09 Score=96.42 Aligned_cols=162 Identities=28% Similarity=0.422 Sum_probs=121.4
Q ss_pred EEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceee
Q 047515 23 YIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETC 102 (248)
Q Consensus 23 ~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~ 102 (248)
++|.|.+++... ...+|..|..+|..|++ .+| |
T Consensus 6 ~~~~~~~~~~~~-----l~~ys~~~~~~~~~~~~----------------------------~~~---~----------- 38 (297)
T KOG1987|consen 6 FTWVISNFSSVG-----LVIYSNGFVKGGCKWRL----------------------------SAY---P----------- 38 (297)
T ss_pred cceeeccCcchh-----hhccccceeecCceEEE----------------------------EEe---c-----------
Confidence 448999999887 36899999999999999 899 8
Q ss_pred cccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCce-eEEeccCCceeEecC--CCCCCcccccCCchhh
Q 047515 103 YINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSY-LVVQDAMGKERRFNG--VKLEWGFDQFIPLEAF 179 (248)
Q Consensus 103 ~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~-~~~~~~~~~~~~F~~--~~~~wG~~~Fi~~~~L 179 (248)
.|+ ++|.|+.+.... +|++++.+.|.+.|+....+ ...+. ....|.. ....||+..+++...+
T Consensus 39 ~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ 104 (297)
T KOG1987|consen 39 KGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLL 104 (297)
T ss_pred CCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeeeeee---eEEeccccccccccCcccccChHHh
Confidence 442 799999987643 79999999999999998765 43311 3334433 3679999999999999
Q ss_pred ccCCCCceeCCEEEEEEEEEE-eeceeeccccccc--------cccCCC----CceeeeecCccccccc----ccCCceE
Q 047515 180 NDASNGYLVDDTCVFGAEVFV-KERNIIKGECLSM--------ANITSS----CKFVWMGENFSKLDER----RQESQVF 242 (248)
Q Consensus 180 ~~~~~gfLvnD~l~i~a~V~V-k~~~~~~~~~~~~--------~~~~~~----~~f~w~~~~fs~l~~~----~~~s~~F 242 (248)
.++..||++++.+++-|.+.| +..+ +.+.... +..+.. ..|+|.+.+|+.++.. ...+..|
T Consensus 105 ~~~~~g~~~~~~~~~~a~~~V~~~~~--~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f 182 (297)
T KOG1987|consen 105 IDCSNGFLVAHKLVLVARSEVFEAMG--KSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAF 182 (297)
T ss_pred hcccCcEEEcCceEEEeeecceeeec--ccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcc
Confidence 999999999988888888877 5542 3332222 212224 7899999999999753 3444667
Q ss_pred EcCcc
Q 047515 243 SAGEH 247 (248)
Q Consensus 243 ~~g~~ 247 (248)
.++++
T Consensus 183 ~~~~~ 187 (297)
T KOG1987|consen 183 KYKNR 187 (297)
T ss_pred ccccH
Confidence 76654
No 20
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.9e-08 Score=101.90 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=108.1
Q ss_pred CCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515 19 PPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT 98 (248)
Q Consensus 19 ~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~ 98 (248)
....++|.+.+...+.. .+.||.|-.++.+|++ .+. |
T Consensus 25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------------~~~---~------- 61 (1093)
T KOG1863|consen 25 LNQSTTIDGIDDKSLLY-----RALSSNFGAGATKWKI----------------------------LIA---P------- 61 (1093)
T ss_pred hcccccccCcCcchhhh-----HhcCccccccccceee----------------------------eec---c-------
Confidence 34556677776666653 6889999999999999 777 7
Q ss_pred ceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchh
Q 047515 99 GETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEA 178 (248)
Q Consensus 99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~ 178 (248)
+++ ....+++||.|...... ..|++++++.+.+.|..++...... ..+|.|.....+||+.+|+.+++
T Consensus 62 ----~~~----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~~~~---~~~h~~~~~~~dwg~~~~~~~~~ 129 (1093)
T KOG1863|consen 62 ----KVN----SLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPDPEK---AIHHVFTADERDWGFSCFSTSSD 129 (1093)
T ss_pred ----ccC----cccceeEEeeeccCCCC-cceEecchhhhccccCCCCchhhhh---hhhhcccccccchhhccchhHhh
Confidence 665 24679999999977665 5599999999999994443333322 28899999999999999999999
Q ss_pred hccCCCCceeCCEEEEEEEEEE-eecee
Q 047515 179 FNDASNGYLVDDTCVFGAEVFV-KERNI 205 (248)
Q Consensus 179 L~~~~~gfLvnD~l~i~a~V~V-k~~~~ 205 (248)
+.++..||+++|++.++++|.+ .+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 130 IRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred ccCcccccccccceeeeeeeeeecCCcc
Confidence 9999999999999999999999 88876
No 21
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=90.01 E-value=0.21 Score=48.18 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=60.9
Q ss_pred CCcEEEEEEcCccccccccc---ceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515 19 PPADYIVRIKSYSLLAEEAI---VEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH 93 (248)
Q Consensus 19 ~~~~~~w~I~~fS~l~~~~~---~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~ 93 (248)
-.+.+.|+|.+|+..+.++. ....+|++|+.. |++-+. .+| -
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~----------------------------~~~---l-- 324 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCA----------------------------RIY---L-- 324 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHh----------------------------Hhh---h--
Confidence 36899999999966665543 247899999774 676666 555 3
Q ss_pred cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEec
Q 047515 94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQ 143 (248)
Q Consensus 94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq 143 (248)
+|+.. ..+-++|+|+.+...+.. ...|...-.+++.++.|
T Consensus 325 ---------ng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf~~~v~~~l~dq 365 (391)
T KOG0297|consen 325 ---------NGDGT-GKGTHLSLYFVVMRGEYDALLPWPFRQKVTLMLLDQ 365 (391)
T ss_pred ---------cCCCC-CCcceeeeeeeecccCcccccccCCCCceEEEEecc
Confidence 44432 356799999999875543 35799999999999999
No 22
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=47.91 E-value=8.8 Score=33.42 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.2
Q ss_pred CCCceeeeecCcccccc-----c--ccCCceEEcC--ccC
Q 047515 218 SSCKFVWMGENFSKLDE-----R--RQESQVFSAG--EHK 248 (248)
Q Consensus 218 ~~~~f~w~~~~fs~l~~-----~--~~~s~~F~~g--~~k 248 (248)
.++.++|+|.+||...+ + ...|..|.+| |++
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~ 76 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK 76 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCee
Confidence 46889999999998843 2 5788999999 865
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=19 Score=38.33 Aligned_cols=28 Identities=36% Similarity=0.660 Sum_probs=24.6
Q ss_pred CCceeeeecCcccccccccCCceEEcCcc
Q 047515 219 SCKFVWMGENFSKLDERRQESQVFSAGEH 247 (248)
Q Consensus 219 ~~~f~w~~~~fs~l~~~~~~s~~F~~g~~ 247 (248)
...|+|.+.++|.|.. +..|+.|.||++
T Consensus 38 ~~sftW~vk~wsel~~-k~~Sp~F~vg~~ 65 (1089)
T COG5077 38 EMSFTWKVKRWSELAK-KVESPPFSVGGH 65 (1089)
T ss_pred hcccceecCChhhhhh-hccCCcccccCe
Confidence 3569999999999988 588899999986
Done!