Query 047515
Match_columns 248
No_of_seqs 153 out of 1109
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 6.8E-30 2.3E-34 209.6 13.4 141 14-205 12-153 (155)
2 3ivv_A Speckle-type POZ protei 100.0 6.8E-29 2.3E-33 201.9 12.0 138 14-202 4-145 (145)
3 4gjh_A TNF receptor-associated 99.9 1.3E-26 4.6E-31 195.6 6.7 141 17-200 20-172 (178)
4 3hqi_A Speckle-type POZ protei 99.9 1.4E-25 4.9E-30 201.5 10.5 174 18-247 4-184 (312)
5 2f1z_A Ubiquitin carboxyl-term 99.9 3.3E-25 1.1E-29 213.2 11.6 144 11-205 21-165 (522)
6 1d00_A Tumor necrosis factor r 99.9 1.3E-25 4.4E-30 186.3 6.0 140 17-200 15-165 (168)
7 1ca9_A TRAF2, protein (TNF rec 99.9 2.5E-25 8.5E-30 189.5 7.1 139 18-200 40-189 (192)
8 1lb6_A TNF receptor-associated 99.9 6.7E-25 2.3E-29 181.2 9.3 140 19-202 3-158 (160)
9 4ghu_A TNF receptor-associated 99.9 3.3E-25 1.1E-29 191.3 5.8 142 17-203 36-190 (198)
10 2gkw_A TNF receptor-associated 99.9 1.5E-24 5.3E-29 185.4 5.7 137 19-200 38-186 (192)
11 1flk_A TNF receptor associated 99.9 1.5E-23 5E-28 184.0 5.5 138 18-200 73-222 (228)
12 4gwm_A Meprin A subunit beta; 98.9 3.2E-09 1.1E-13 105.0 9.6 135 15-200 400-565 (592)
13 4ghu_A TNF receptor-associated 86.1 0.21 7.3E-06 42.2 1.1 32 217-248 37-77 (198)
14 2gkw_A TNF receptor-associated 83.7 0.24 8.3E-06 41.3 0.4 31 218-248 38-77 (192)
15 1ca9_A TRAF2, protein (TNF rec 83.5 0.24 8.4E-06 41.0 0.3 32 217-248 40-80 (192)
16 1flk_A TNF receptor associated 80.8 0.37 1.3E-05 41.4 0.4 31 218-248 74-113 (228)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=6.8e-30 Score=209.57 Aligned_cols=141 Identities=18% Similarity=0.323 Sum_probs=116.2
Q ss_pred ccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515 14 STSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH 93 (248)
Q Consensus 14 ~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~ 93 (248)
...-.+.++|+|+|+|||.++ +.++|++|.+||++|+| .+| |
T Consensus 12 ~~~~~~~~~~~w~I~nfS~~~-----~~~~S~~f~~gg~~W~i----------------------------~~y---P-- 53 (155)
T 2foj_A 12 DTSWRSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKI----------------------------MVM---P-- 53 (155)
T ss_dssp -CTTCSEEEEEEEESSGGGCC-----SCEECCCEEETTEEEEE----------------------------EEE---E--
T ss_pred CCCcCCCcEEEEEECChhhcC-----CceEcCCEEECCccEEE----------------------------EEE---E--
Confidence 344567899999999999995 47999999999999999 888 9
Q ss_pred cccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCccccc
Q 047515 94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQF 173 (248)
Q Consensus 94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~F 173 (248)
+|+..++..+||||||.|... ..+..|+++|+|+|.|+||+++.....+. ..++|.....+|||.+|
T Consensus 54 ---------~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~F 120 (155)
T 2foj_A 54 ---------RFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNF 120 (155)
T ss_dssp ---------EC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEE
T ss_pred ---------CCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCe
Confidence 886431246899999999644 34567999999999999999876433333 67899877789999999
Q ss_pred CCchhhccCCCCceeCCEEEEEEEEEE-eecee
Q 047515 174 IPLEAFNDASNGYLVDDTCVFGAEVFV-KERNI 205 (248)
Q Consensus 174 i~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~~ 205 (248)
|+|++|+++++|||+||+|+|+|+|.| +++|+
T Consensus 121 i~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 121 MAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 999999998999999999999999999 88765
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=6.8e-29 Score=201.87 Aligned_cols=138 Identities=27% Similarity=0.385 Sum_probs=116.3
Q ss_pred ccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEec
Q 047515 14 STSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCY 90 (248)
Q Consensus 14 ~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~ 90 (248)
.+.+...++|+|+|+|||.+++ +.++.++||+|.+||| +|+| .+|
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~-~~g~~~~S~~F~~gg~~g~~W~i----------------------------~~y--- 51 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCL----------------------------RVN--- 51 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCC-CTTCCEECCCEEESGGGCEEEEE----------------------------EEE---
T ss_pred CCCcEEEEEEEEEEcCchHHhh-cCCCEEECCCcCCCCcCCceEEE----------------------------EEE---
Confidence 4567788999999999999975 3457899999999996 9999 888
Q ss_pred ccccccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcc
Q 047515 91 NTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGF 170 (248)
Q Consensus 91 P~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~ 170 (248)
| +|+.. ...+|||+||.|.+. ..|+++|+|+|+|+||+++....... ...++|+. ..+|||
T Consensus 52 P-----------~G~~~-~~~~~lSlyL~l~~~----~~w~v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~ 112 (145)
T 3ivv_A 52 P-----------KGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGF 112 (145)
T ss_dssp T-----------TCSSG-GGTTEEEEEEEEEEC----SSSEEEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEE
T ss_pred c-----------CCCCC-CCCCeEEEEEEEcCC----CCCcEEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCH
Confidence 9 88753 346899999999864 36999999999999999887654332 25788974 688999
Q ss_pred cccCCchhhccCCCCceeCCEEEEEEEEEE-ee
Q 047515 171 DQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KE 202 (248)
Q Consensus 171 ~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~ 202 (248)
.+||++++|+++++|||+||+|+|+|+|.| ++
T Consensus 113 ~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 113 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred HHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999888899999999999999999 64
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.93 E-value=1.3e-26 Score=195.63 Aligned_cols=141 Identities=20% Similarity=0.279 Sum_probs=112.6
Q ss_pred cCCCcEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515 17 HVPPADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN 91 (248)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P 91 (248)
....++|+|+|+|||.+++. +.+..++||+|.+| ||+|+| .+| |
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i----------------------------~~y---P 68 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCA----------------------------RAY---L 68 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEE----------------------------EEE---E
Confidence 45689999999999999863 22338999999999 999999 888 9
Q ss_pred cccccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEecC----C
Q 047515 92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFNG----V 164 (248)
Q Consensus 92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~~----~ 164 (248)
+|+.. ...+||||||.|.+.+. ....|.+.|+|+|.|+||.++....... .....+.|+. .
T Consensus 69 -----------~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~ 136 (178)
T 4gjh_A 69 -----------NGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEM 136 (178)
T ss_dssp -----------TCCGG-GTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSB
T ss_pred -----------CCCCC-CCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccc
Confidence 88754 34689999999976542 2347999999999999999765443221 0113467763 3
Q ss_pred CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 165 ~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
+.+|||.+||++++|+++++|||+||+++|+|+|.|
T Consensus 137 ~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 137 NIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp CCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred cCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 568999999999999988899999999999999987
No 4
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=1.4e-25 Score=201.52 Aligned_cols=174 Identities=23% Similarity=0.314 Sum_probs=127.5
Q ss_pred CCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515 18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI 94 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~ 94 (248)
...++|+|+|+|||.++ .+.++.+.||+|.+||| +|+| .+| |
T Consensus 4 ~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i----------------------------~~y---P--- 48 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCL----------------------------RVN---P--- 48 (312)
T ss_dssp EEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEE----------------------------EEE---T---
T ss_pred eEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEE----------------------------EEE---C---
Confidence 34689999999999996 34457999999999996 9999 888 9
Q ss_pred ccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515 95 IKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI 174 (248)
Q Consensus 95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi 174 (248)
+|+.. +.++|||+||.|.+.. .|.+.|+|+|.|+||+++.....+. ...++|+. +.+|||.+||
T Consensus 49 --------~G~~~-~~~~~lslyL~~~~~~----~~~v~a~~~~~l~~~~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi 112 (312)
T 3hqi_A 49 --------KGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFI 112 (312)
T ss_dssp --------TCCC---CTTEEEEEEEEEECC----C-CEEEEEEEEEECTTSCEEEEEEC--SSCEEECT-TCEEEEEEEE
T ss_pred --------CCCCc-cCCCcEEEEEEEcCCC----CCcEEEEEEEEEEeCCCCccccccc--CCceeCCC-CCCcCHHHhc
Confidence 88753 3568999999998643 5899999999999999877655442 26788985 4589999999
Q ss_pred CchhhccCCCCceeCCEEEEEEEEEE-eece-eeccccc-cccccCCCCceeeeecCccccc-ccccCCceEEcCcc
Q 047515 175 PLEAFNDASNGYLVDDTCVFGAEVFV-KERN-IIKGECL-SMANITSSCKFVWMGENFSKLD-ERRQESQVFSAGEH 247 (248)
Q Consensus 175 ~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~-~~~~~~~-~~~~~~~~~~f~w~~~~fs~l~-~~~~~s~~F~~g~~ 247 (248)
+|++|+++++|||+||+++|+|+|.| +++. ....+.. .+..|+++ ..++|.+|. .....+.+|.++|+
T Consensus 113 ~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~-----l~~~l~~l~~~~~~~Dv~l~v~~~ 184 (312)
T 3hqi_A 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECR-----LADELGGLWENSRFTDCCLCVAGQ 184 (312)
T ss_dssp EHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCCCCCCC-----HHHHHHHHHHTTCSCCEEEEETTE
T ss_pred cHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccCCCCch-----HHHHHHHHHhCCCCCceEEEECCE
Confidence 99999988899999999999999999 7642 2111111 12234432 235565654 33455557777764
No 5
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.92 E-value=3.3e-25 Score=213.20 Aligned_cols=144 Identities=18% Similarity=0.320 Sum_probs=115.2
Q ss_pred cccccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEec
Q 047515 11 IGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCY 90 (248)
Q Consensus 11 ~~~~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~ 90 (248)
+.......+.++|+|+|+|||.+++ .++|++|.+||++|+| .+|
T Consensus 21 ~~~~~~~~~~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i----------------------------~~y--- 64 (522)
T 2f1z_A 21 MEDDTSWRSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKI----------------------------MVM--- 64 (522)
T ss_dssp -----CCCSEEEEEEEESSCTTCCS-----CEECCCEEETTEEEEE----------------------------EEC---
T ss_pred ccccccccCCcEEEEEECChhhcCC-----ceeCCCEEECCEeeEE----------------------------EEE---
Confidence 3334444678999999999999975 6899999999999999 777
Q ss_pred ccccccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcc
Q 047515 91 NTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGF 170 (248)
Q Consensus 91 P~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~ 170 (248)
| +|+..++.++|||+||.|.+. ..+..|+++|+|+|.|+|++++.....+. ..++|.....+|||
T Consensus 65 P-----------~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~ 129 (522)
T 2f1z_A 65 P-----------RFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGF 129 (522)
T ss_dssp B-----------C--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEE
T ss_pred e-----------CCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcch
Confidence 9 886432356899999999876 44668999999999999999876555443 67889877789999
Q ss_pred cccCCchhhccCCCCceeCCEEEEEEEEEE-eecee
Q 047515 171 DQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KERNI 205 (248)
Q Consensus 171 ~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~~ 205 (248)
.+||+|++|.++++|||+||+++|+|+|.| .++++
T Consensus 130 ~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 130 SNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp SSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred hheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 999999999988899999999999999999 77654
No 6
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.91 E-value=1.3e-25 Score=186.32 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=108.6
Q ss_pred cCCCcEEEEEEcCcccccccc-cce--EEEcCcEE--EcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515 17 HVPPADYIVRIKSYSLLAEEA-IVE--KYESGAFQ--ARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN 91 (248)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~~-~~~--~~~S~~F~--vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P 91 (248)
....++|+|+|+|||.+++.. .++ .++||+|. +||++|+| .+| |
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i----------------------------~~y---P 63 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L 63 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEE----------------------------EEE---e
Confidence 347899999999999998642 334 39999997 78999999 888 9
Q ss_pred cccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEec-cCCceeEecC----CC
Q 047515 92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQD-AMGKERRFNG----VK 165 (248)
Q Consensus 92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~-~~~~~~~F~~----~~ 165 (248)
+|+.. ..++|||+||.|.+.+... ..|++.|+|+|.|+||.++.+..... .....+.|.. .+
T Consensus 64 -----------~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~ 131 (168)
T 1d00_A 64 -----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMN 131 (168)
T ss_dssp -----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBC
T ss_pred -----------CCCCC-CCCcEEEEEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCC
Confidence 78653 2468999999998755433 57999999999999999865332210 0001235642 35
Q ss_pred CCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
.+|||.+||++++|+++ +|||+||+++|+|+|.|
T Consensus 132 ~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v 165 (168)
T 1d00_A 132 IASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL 165 (168)
T ss_dssp CCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred CCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence 78999999999999964 49999999999999987
No 7
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.91 E-value=2.5e-25 Score=189.50 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=109.1
Q ss_pred CCCcEEEEEEcCccccccc-ccce--EEEcCcEEE--cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515 18 VPPADYIVRIKSYSLLAEE-AIVE--KYESGAFQA--RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT 92 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~v--gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~ 92 (248)
...++|+|+|+|||.+++. +.++ .++||+|.+ ||++|+| .+| |
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i----------------------------~~y---P- 87 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L- 87 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T-
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEE----------------------------EEE---e-
Confidence 5789999999999999764 3334 599999999 9999999 888 9
Q ss_pred ccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEecc-CCceeEec----CCCC
Q 047515 93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQDA-MGKERRFN----GVKL 166 (248)
Q Consensus 93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~~-~~~~~~F~----~~~~ 166 (248)
+|+.. ..++|||+||.+.+.+..+ ..|+++|+|+|.|+||.++.+...... ....+.|. ..+.
T Consensus 88 ----------~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~ 156 (192)
T 1ca9_A 88 ----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNI 156 (192)
T ss_dssp ----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCC
T ss_pred ----------CCCCC-CCCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCC
Confidence 88653 2468999999998765433 579999999999999998754321100 00123354 2356
Q ss_pred CCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 167 EWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 167 ~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
+|||.+||++++|.+ ++|||+||+++|+|+|.|
T Consensus 157 ~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 157 ASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp CEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred CcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence 899999999999986 579999999999999987
No 8
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.91 E-value=6.7e-25 Score=181.17 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=105.3
Q ss_pred CCcEEEEEEcCcccccc-cccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515 19 PPADYIVRIKSYSLLAE-EAIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH 93 (248)
Q Consensus 19 ~~~~~~w~I~~fS~l~~-~~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~ 93 (248)
..++|+|+|+|||.+++ .+.++ .++||+|.+| ||+|+| .+| |
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P-- 49 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM----------------------------RLH---L-- 49 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEE----------------------------EEE---E--
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEE----------------------------EEE---e--
Confidence 56899999999999976 34455 8999999999 999999 888 9
Q ss_pred cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCce--eEEec--cCCceeEecC-----
Q 047515 94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSY--LVVQD--AMGKERRFNG----- 163 (248)
Q Consensus 94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~--~~~~~--~~~~~~~F~~----- 163 (248)
+|+...+..+||||||.+++.+.. ..+|.+.|+|+|+|+||.++.. ..... .......|..
T Consensus 50 ---------~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~ 120 (160)
T 1lb6_A 50 ---------QLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR 120 (160)
T ss_dssp ---------CCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSB
T ss_pred ---------cCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccC
Confidence 886532236899999999865432 3469999999999999987531 11110 0001123432
Q ss_pred CCCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE-ee
Q 047515 164 VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KE 202 (248)
Q Consensus 164 ~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~ 202 (248)
+..+|||.+||++++|+ ++|||+||+++|+|+|.| ++
T Consensus 121 ~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 121 NPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp CSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred CCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 12379999999999998 579999999999999998 65
No 9
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.91 E-value=3.3e-25 Score=191.26 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=111.6
Q ss_pred cCCCcEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515 17 HVPPADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN 91 (248)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P 91 (248)
....++|+|+|+|||.+++. +.++.++||+|.+| |++|+| .+| |
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i----------------------------~~y---P 84 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L 84 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEE----------------------------EEE---e
Confidence 34679999999999999873 34578999999999 999999 888 9
Q ss_pred cccccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEecc------CCceeEecCC
Q 047515 92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQDA------MGKERRFNGV 164 (248)
Q Consensus 92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~~------~~~~~~F~~~ 164 (248)
+|+.. ..++||||||.+++.+.. ...|.+.|+|+|.|+||.+......... ....+.|+..
T Consensus 85 -----------nG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~ 152 (198)
T 4ghu_A 85 -----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM 152 (198)
T ss_dssp -----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSB
T ss_pred -----------CCCCC-CCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccC
Confidence 88754 346899999999865432 3479999999999999987654433210 0012334445
Q ss_pred CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE-eec
Q 047515 165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KER 203 (248)
Q Consensus 165 ~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~ 203 (248)
+.+|||.+||++++|++ +|||+||+++|+|+|.| ..+
T Consensus 153 ~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 153 NIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred cCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence 67899999999999984 89999999999999998 554
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.90 E-value=1.5e-24 Score=185.41 Aligned_cols=137 Identities=17% Similarity=0.211 Sum_probs=108.5
Q ss_pred CCcEEEEEEcCccccccc-ccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515 19 PPADYIVRIKSYSLLAEE-AIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH 93 (248)
Q Consensus 19 ~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~ 93 (248)
..++|+|+|+|||.+++. +.++ .++||+|.+| ||+|+| .+| |
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i----------------------------~~y---P-- 84 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L-- 84 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEE----------------------------EEE---T--
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEE----------------------------EEE---e--
Confidence 689999999999999753 3344 5999999999 999999 888 9
Q ss_pred cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEecCC----CC
Q 047515 94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFNGV----KL 166 (248)
Q Consensus 94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~~~----~~ 166 (248)
+|+.. ..++|||+||.+++.+.. ...|++.|+|+|+|+||.++....... .....+.|... +.
T Consensus 85 ---------nG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~ 154 (192)
T 2gkw_A 85 ---------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNI 154 (192)
T ss_dssp ---------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCC
T ss_pred ---------CCCCC-CCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcC
Confidence 88754 346899999999865432 347999999999999999875443221 00122557532 46
Q ss_pred CCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 167 EWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 167 ~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
+|||.+||++++|.+ +|||+||+++|+|+|.|
T Consensus 155 ~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 155 ASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp CEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred CCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence 899999999999986 59999999999999987
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.88 E-value=1.5e-23 Score=184.04 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=108.9
Q ss_pred CCCcEEEEEEcCccccccc-ccc--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515 18 VPPADYIVRIKSYSLLAEE-AIV--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT 92 (248)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~-~~~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~ 92 (248)
...++|+|+|+|||.+++. +.+ ..++||+|.+| ||+|+| .+| |
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P- 120 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L- 120 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECE----------------------------EEE---T-
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEE----------------------------EEE---c-
Confidence 4789999999999999753 222 37999999999 999999 888 9
Q ss_pred ccccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEec----CCC
Q 047515 93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFN----GVK 165 (248)
Q Consensus 93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~----~~~ 165 (248)
+|+.. ..++|||+||.+++.+.. ...|++.|+|+|+|+||.++....... .....+.|. ..+
T Consensus 121 ----------nG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~ 189 (228)
T 1flk_A 121 ----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 189 (228)
T ss_dssp ----------TCCGG-GTTTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBC
T ss_pred ----------CCCCC-CCCCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCC
Confidence 88754 356899999999865433 347999999999999999876433221 001233464 234
Q ss_pred CCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
.+|||.+||++++|++ +|||+||+++|+|+|.|
T Consensus 190 ~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 190 IASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp CCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred CCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence 6899999999999985 79999999999999988
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.90 E-value=3.2e-09 Score=105.03 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=96.4
Q ss_pred cccCCCcEEEEEEcCcccccccccceEEEcCcEEE-cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515 15 TSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQA-RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH 93 (248)
Q Consensus 15 ~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~v-gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~ 93 (248)
+.+.+.....|+|.||+.+...+. ..++||+|+- .||+++| .+| |
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~-~~~~Sp~Fys~~GY~~~v----------------------------~l~---~-- 445 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPN-GTLYSPPFYSSKGYAFQI----------------------------YLN---L-- 445 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTT-CEEECCCEECTTSCEEEE----------------------------EEE---C--
T ss_pred EeeCCCCCCceeecCHHHhhcCCC-CceeCCCccCCCCeEEEE----------------------------EEe---c--
Confidence 344567789999999999986543 6899999976 5999999 888 6
Q ss_pred cccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEE-EEEEEEEEecCCCceeEEe-------cc-C--------
Q 047515 94 IIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVY-AVFCLFLLYQNQDSYLVVQ-------DA-M-------- 155 (248)
Q Consensus 94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~-a~f~l~llnq~~~~~~~~~-------~~-~-------- 155 (248)
. ...|+|+|+++...+. ....|.+. -+++|.|++|+.+....+. +. +
T Consensus 446 ---------~------~~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~ 510 (592)
T 4gwm_A 446 ---------A------HVTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYF 510 (592)
T ss_dssp ---------C------SSSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBT
T ss_pred ---------C------CCceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccc
Confidence 2 2468999999986432 34579995 6899999999744322111 00 0
Q ss_pred -------CceeEecCC-----CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515 156 -------GKERRFNGV-----KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200 (248)
Q Consensus 156 -------~~~~~F~~~-----~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V 200 (248)
+....|... +.+|||+.||+.+.|. +..||.||++.|.+.|.=
T Consensus 511 w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 511 WDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDFIKGDDVYILLTVED 565 (592)
T ss_dssp TSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEE
T ss_pred cCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCcccCCeEEEEEEEEe
Confidence 001112111 2468999999999998 467999999999977743
No 13
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=86.10 E-value=0.21 Score=42.18 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.9
Q ss_pred CCCCceeeeecCcccccc-------cccCCceEEcC--ccC
Q 047515 217 TSSCKFVWMGENFSKLDE-------RRQESQVFSAG--EHK 248 (248)
Q Consensus 217 ~~~~~f~w~~~~fs~l~~-------~~~~s~~F~~g--~~k 248 (248)
+.+..|+|+|+|||.+.+ ....|+.|.+| |++
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~ 77 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK 77 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCE
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcE
Confidence 346899999999999975 46889999999 864
No 14
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=83.75 E-value=0.24 Score=41.32 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.4
Q ss_pred CCCceeeeecCccccccc-------ccCCceEEcC--ccC
Q 047515 218 SSCKFVWMGENFSKLDER-------RQESQVFSAG--EHK 248 (248)
Q Consensus 218 ~~~~f~w~~~~fs~l~~~-------~~~s~~F~~g--~~k 248 (248)
.+.+|+|+|+|||.+.+. ...|+.|.+| |+|
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gyk 77 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK 77 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCE
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcE
Confidence 468899999999999642 4789999999 764
No 15
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=83.51 E-value=0.24 Score=41.05 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCCCceeeeecCccccccc-------ccCCceEEc--CccC
Q 047515 217 TSSCKFVWMGENFSKLDER-------RQESQVFSA--GEHK 248 (248)
Q Consensus 217 ~~~~~f~w~~~~fs~l~~~-------~~~s~~F~~--g~~k 248 (248)
+.+..|+|+|+|||.+.+. ...|+.|.+ ||++
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~ 80 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYK 80 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCE
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeE
Confidence 3478899999999999753 488999999 8864
No 16
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=80.81 E-value=0.37 Score=41.41 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCceeeeecCcccccc-------cccCCceEEcC--ccC
Q 047515 218 SSCKFVWMGENFSKLDE-------RRQESQVFSAG--EHK 248 (248)
Q Consensus 218 ~~~~f~w~~~~fs~l~~-------~~~~s~~F~~g--~~k 248 (248)
.+..|+|+|+|||.+.+ ....|+.|.+| |++
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~ 113 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK 113 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCE
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcE
Confidence 47889999999999964 26889999999 764
Done!