BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047516
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 81/91 (89%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
KEQDR+LPIANV RIMK +P N KI+K+AKE +QECVSEFISF+T EAS+KCQ+EKRKT
Sbjct: 2 KEQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKT 61
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYRE 128
+NG+DI++A+T+LGFE+Y LK+YLSKYRE
Sbjct: 62 VNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 79/91 (86%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS++C +EKRKT
Sbjct: 4 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 63
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYRE 128
ING+DI++A++TLGF+ YV PLKLYL K+RE
Sbjct: 64 INGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 79/91 (86%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS++C +EKRKT
Sbjct: 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 62
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYRE 128
ING+DI++A++TLGF+ YV PLKLYL K+RE
Sbjct: 63 INGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 41 DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 100
D +P A + +++K+ +P N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 13 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 71
Query: 101 DDIIWAITTLGFEDYVAPLKLYLSKYREI 129
+ +I A+ +LGF Y++ +K L + + +
Sbjct: 72 EHVIQALESLGFGSYISEVKEVLQECKTV 100
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A +GR++K+ +P + +SK+A+ + S F FVT ++ ++ KTI
Sbjct: 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYR 127
DI+ +T L FE +V L L YR
Sbjct: 66 AKDILQTLTELDFESFVPSLTQDLEVYR 93
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From Methanothermus
Fervidus
Length = 69
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA +GRI+K G ++S DA+ T+ + + E + EA + RKTI +DI
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 104 IWAI 107
A+
Sbjct: 61 ELAV 64
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA +GRI+K G ++S DA+ T+ + + E + EA + RKTI +DI
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 104 IWAI 107
A+
Sbjct: 61 ELAV 64
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 69
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA +GRI+K G ++S DA+ + + + E + EA + RKTI +DI
Sbjct: 4 LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 68
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA +GRI+K G ++S DA+ + + + E + EA + RKTI +DI
Sbjct: 3 LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 33.9 bits (76), Expect = 0.074, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA V R+++K G ++S+ A + + E + E+ + +A + + RKT+ +DI
Sbjct: 7 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 64
Query: 104 IWAITT 109
AI +
Sbjct: 65 KLAIKS 70
>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
Length = 357
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 174 MSQSPFMATDHHHQSFPLPFSPNSIQKQL 202
M+ S F+ + H++F L FSP SI+KQ+
Sbjct: 207 MAASAFIMVGNGHEAFGLEFSPTSIRKQV 235
>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
Length = 357
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 174 MSQSPFMATDHHHQSFPLPFSPNSIQKQL 202
M+ S F+ + H++F L FSP SI+KQ+
Sbjct: 207 MAASAFIMVGNGHEAFGLEFSPTSIRKQV 235
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
Length = 111
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 63 ISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122
+++DA + V++C + ++ + Q RKT+ D+ + G PL +
Sbjct: 25 VTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84
Query: 123 LSKYREIEGEKLNIP 137
+ ++ +E KL IP
Sbjct: 85 VERHLPLEYRKLLIP 99
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP+A + +IMK + IS +A + FI+ +T A + KR+T+ +DI
Sbjct: 20 LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 104 IWAITTLGFEDYV 116
AIT D++
Sbjct: 79 AMAITKFDQFDFL 91
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP+A + +IMK + IS +A + FI+ +T A + KR+T+ +DI
Sbjct: 17 LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 75
Query: 104 IWAITTLGFEDYV 116
AIT D++
Sbjct: 76 AMAITKFDQFDFL 88
>pdb|3VH5|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 111
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 63 ISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122
+++DA + V++ + ++ + Q RKT+ D+ + G PL +
Sbjct: 25 VTRDAYKIVEKASERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84
Query: 123 LSKYREIEGEKLNIP 137
+ ++ +E KL IP
Sbjct: 85 VERHLPLEYRKLLIP 99
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP A + RI ++ I G ++S+DAK+T+ + V +V A +KT+ + +
Sbjct: 5 LPKAAIERIFRQGI-GERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLXEEHL 63
Query: 104 IWAITTL---GFEDYVAPL 119
L G EDY L
Sbjct: 64 KALADVLXVEGVEDYDGEL 82
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWA 106
A V RI+K+ G + S DA + + + + +A++ + RKT+ G+D+ A
Sbjct: 86 ATVRRILKR--AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKA 143
Query: 107 IT 108
IT
Sbjct: 144 IT 145
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 59 GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAI 107
G+ +IS E V+ + F+ V ++ + KRKT+ D+++A+
Sbjct: 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL 109
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP+A + ++MK P IS +A + FI+ +T A + KR+T+ DI
Sbjct: 42 LPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDI 100
Query: 104 IWAITTLGFEDYV 116
A++ D++
Sbjct: 101 AAALSKSDMFDFL 113
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 59 GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDY 115
G +IS E V+ + F+ V +A + KRKT+ D+++A+ G Y
Sbjct: 43 GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 59 GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111
G +IS E V+ + F+ V +A + KRKT+ D+++A+ G
Sbjct: 19 GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,660,841
Number of Sequences: 62578
Number of extensions: 152357
Number of successful extensions: 428
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 23
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)