BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047516
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/184 (68%), Positives = 147/184 (79%), Gaps = 10/184 (5%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
KEQDRFLPIANVGRIMKKV+PGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNIPKQQRSEQRVQQQQQQ-QQSH 156
INGDDIIWAITTLGFEDYVAPLK+YL KYR+ EGEK+N PKQQ+ Q+ QQ QQQ ++
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHHNY 154
Query: 157 EHEQQLPYSSVYSSTNLMSQ---SPFMATDHHHQSFP-LPFSPNSIQKQL--QPQDQIDS 210
+ ++Q ++ S T+ +S SPF+ D HQ FP + FSP S+QKQ Q + IDS
Sbjct: 155 QFQEQDQNNNNMSCTSYISHHHPSPFLPVD--HQPFPNIAFSPKSLQKQFPQQHDNNIDS 212
Query: 211 VGNW 214
+ +W
Sbjct: 213 I-HW 215
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 99/115 (86%)
Query: 26 SGSNSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGE 85
SG + + N +++EQDRFLPIANV RIMKK +P N KISKDAKETVQECVSEFISF+TGE
Sbjct: 8 SGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGE 67
Query: 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNIPKQQ 140
ASDKCQREKRKTINGDD++WA+TTLGFEDYV PLK+YL KYRE+EGEK +Q
Sbjct: 68 ASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQ 122
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 93/103 (90%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDRFLPIANV RIMKK +P N KISKDAKET+QECVSEFISFVTGEASDKCQ+EKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNIPKQQ 140
INGDD++WA+TTLGFEDYV PLK+YL ++REIEGE+ + + Q
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQ 128
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 88/95 (92%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDRFLPIAN+ RIMKK IP NGKI+KDAKETVQECVSEFISF+T EASDKCQREKRKT
Sbjct: 30 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 89
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
INGDD++WA+ TLGFEDY+ PLK+YL KYRE+EG+
Sbjct: 90 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 88/95 (92%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDRFLPIAN+ RIMKK IP NGKI+KDAKETVQECVSEFISF+T EASDKCQREKRKT
Sbjct: 37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 96
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
INGDD++WA+ TLGFEDY+ PLK+YL KYRE+EG+
Sbjct: 97 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 114/167 (68%), Gaps = 9/167 (5%)
Query: 17 SPESPCVKSSGSNSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVS 76
SP SG + + + + +EQDRFLPIAN+ RIMK+ +P NGKI+KDAKE VQECVS
Sbjct: 8 SPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67
Query: 77 EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE---- 132
EFISFVT EASDKCQREKRKTINGDD++WA+ TLGFEDY+ PLK+YL +YRE+EG+
Sbjct: 68 EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGS 127
Query: 133 -KLNIPKQQRSEQRVQQQQQQQQSHEHEQQLPYSSVYSSTNLMSQSP 178
K P ++ Q Q Q Q +H Q PY + + ++M P
Sbjct: 128 AKGGDPNAKKDGQSSQNGQFSQLAH----QGPYGNSQAQQHMMVPMP 170
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 75/97 (77%), Positives = 89/97 (91%)
Query: 36 NSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKR 95
N +EQDRFLPIAN+ RIMK+ +P NGKI+KDAKET+QECVSEFISFVT EASDKCQREKR
Sbjct: 26 NVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKR 85
Query: 96 KTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
KTINGDD++WA+ TLGFEDY+ PLK+YL +YRE+EG+
Sbjct: 86 KTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 95/116 (81%), Gaps = 5/116 (4%)
Query: 17 SPESPCVKSSGSNSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVS 76
+P SP + + + +EQDR+LPIAN+ RIMKK +P NGKI KDAK+TVQECVS
Sbjct: 4 TPSSPA-----GDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 58
Query: 77 EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
EFISF+T EASDKCQ+EKRKT+NGDD++WA+ TLGFEDY+ PLK+YL++YRE+EG+
Sbjct: 59 EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
KEQDRFLPIAN+GRIM++ +P NGKI+KD+KE+VQECVSEFISF+T EASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
INGDD+IW++ TLGFEDYV PLKLYL YRE EG+
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 73/98 (74%), Positives = 84/98 (85%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
KEQDR LPIANVGRIMK ++P N K+SK+AKET+QECVSEFISFVTGEASDKC +EKRKT
Sbjct: 50 KEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 109
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLN 135
+NGDDI WA+ LGF+DY A LK YL +YR +EGEK N
Sbjct: 110 VNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPN 147
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 87/95 (91%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDRFLPIAN+ RIMKK +P NGKI+KDAKET+QECVSEFISFVT EASDKCQ+EKRKT
Sbjct: 33 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKT 92
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132
ING+D+++A+ TLGFE+YV PLK+YL KYRE+ G+
Sbjct: 93 INGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 83/93 (89%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDR+LPIAN+ RIMKK +P N K++KDAKETVQ+CVSEFISF+T EASDKCQ+EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIE 130
ING+DII A+ +LGFE+YV PLK+YL KYRE E
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETE 139
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 88/106 (83%)
Query: 28 SNSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEAS 87
SN +EQDRF+PIANV RIM++++P + KIS D+KET+QECVSE+ISF+TGEA+
Sbjct: 47 SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106
Query: 88 DKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEK 133
++CQRE+RKTI +D++WA++ LGF+DY+ PL LYL +YRE+EGE+
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 103
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 104 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 103
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 104 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 103
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 104 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 103
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 104 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 44 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 103
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 104 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
++N + + +EQD +LPIANV RIMK IP GKI+KDAKE VQECVSEFISF+T EAS+
Sbjct: 42 DTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASE 101
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
+C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE ++GEK
Sbjct: 102 RCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 147
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 84/97 (86%), Gaps = 1/97 (1%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQD +LPIANV RIMK IP +GKI+KDAKE VQECVSEFISF+T EAS++C +EKRKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYRE-IEGEK 133
ING+DI++A++TLGF+ YV PLK YL KYRE ++GEK
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK 150
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 14/138 (10%)
Query: 4 DSHGNGPNGPDGGSPESPCVKSSGSNSNNNN--------HNSKEQDRFLPIANVGRIMKK 55
D H N P +P + V +G+ NN ++EQD+++PIANV RIM+K
Sbjct: 22 DQHSNNP------TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRK 75
Query: 56 VIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDY 115
+P + KIS DAKET+QECVSE+ISFVTGEA+++CQRE+RKTI +DI+WA++ LGF++Y
Sbjct: 76 TLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNY 135
Query: 116 VAPLKLYLSKYREIEGEK 133
V PL +++++YREIE ++
Sbjct: 136 VDPLTVFINRYREIETDR 153
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 78/95 (82%)
Query: 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTI 98
++DR LPIANVGR+MK+++P N KISK+AK+TVQEC +EFISFVT EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 99 NGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEK 133
NGDDI WA++TLG ++Y + +L KYRE E E+
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERER 97
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Query: 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDD 102
LPIANV RIMK +P N KISK+AK+ VQ+CVSEFISFVTGEAS++C +EKRKTI G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 103 IIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNI--PKQQRSEQ 144
++ A+ TLGFE+Y LK+ L+KYRE + ++ KQ RSE+
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSASMKETKQSRSEE 114
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 81/107 (75%)
Query: 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 97
+EQDR+LPI NV R+MK +P + K+SKDAKE +QECVSE ISFVT EASD+C +KRKT
Sbjct: 36 REQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKT 95
Query: 98 INGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNIPKQQRSEQ 144
ING+DI+ ++ LGFE+Y LK+YL+KYR+ + K + +Q E+
Sbjct: 96 INGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLMYEQDDEE 142
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 74/98 (75%)
Query: 31 NNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKC 90
NN + EQDR+LPI NV R+MK +P K+SKDAKE +QECVSEFISFVT EA D+C
Sbjct: 14 NNYLNELAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRC 73
Query: 91 QREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE 128
KRKTING+DI+ ++ LGFE+Y LK+YL+KYR+
Sbjct: 74 TSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQ 111
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 58/64 (90%), Gaps = 1/64 (1%)
Query: 71 VQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYRE-I 129
VQECVSEFISF+T EAS++C +EKRKTING+DI++A++TLGF+ YV PLKLYL K+RE +
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 130 EGEK 133
+GEK
Sbjct: 61 KGEK 64
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 22 CVKSSGSNSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISF 81
V+S G + N LP+AN+ R++KKV+PG KI AK +C EF+ F
Sbjct: 19 AVRSDGVGGSATNAE-------LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGF 71
Query: 82 VTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIE 130
V EAS+K + E R+T+ +D + + LGF+ YV P+ Y+ YRE E
Sbjct: 72 VGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 34 NHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQRE 93
+ N KE + LP A V +++K+++P + K S + ++ + EC EFI ++ EA+D C RE
Sbjct: 3 DKNDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGRE 62
Query: 94 KRKTINGDDIIWAITTLGFEDY 115
+++TI + +I A+T LGF DY
Sbjct: 63 QKRTIAAEHVIKALTELGFSDY 84
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + +I+K+++P + ++++DA++ + EC EFI+ V+ E++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLS----KYREIEGEKLNI---PKQQRSEQRVQQQQQQ 152
+ ++ A+ LGF +Y+ ++Y + KY ++ + ++ P Q +E+ +QQ+
Sbjct: 72 PEHVLKALQVLGFGEYIE--EVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQR 129
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 37 SKEQDRF-LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKR 95
S E D LP A++ +I+K+++P +++ +++E + C SEFI ++ EA++ C +
Sbjct: 12 SAEDDELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNK 70
Query: 96 KTINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEG---------EKLNIPKQQRSEQRV 146
KTIN + ++ A+ LGF DY + L +E+ E L IP+ E+ +
Sbjct: 71 KTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENLGIPE----EELL 126
Query: 147 QQQQQ 151
+QQQ+
Sbjct: 127 RQQQE 131
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 41 DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 100
D +P A + +++K+ +P N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 101 DDIIWAITTLGFEDYVAPLKLYLSKYREI---------EGEKLNIPKQQRSEQRVQQQQQ 151
+ +I A+ +LGF Y++ +K L + + + E L IP+ E+ ++QQQ+
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPE----EELLRQQQE 124
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 41 DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 100
D +P A + +++K+ +P N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 101 DDIIWAITTLGFEDYVAPLKLYLSKYREI---------EGEKLNIPKQQRSEQRVQQQQQ 151
+ +I A+ +LGF Y++ +K L + + + E L IP+ E+ ++QQQ+
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPE----EELLRQQQE 124
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 41 DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 100
D +P A + +++K+ +P N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 101 DDIIWAITTLGFEDYVAPLKLYLSKYREI---------EGEKLNIPKQQRSEQRVQQQQQ 151
+ +I A+ +LGF Y++ +K L + + + E L IP+ E+ ++QQQ+
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPE----EELLRQQQE 124
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 41 DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 100
D +P A + +++K+ +P N +++ DA+E V C +EFI ++ EA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 101 DDIIWAITTLGFEDYVAPLKLYLSKYREI---------EGEKLNIPKQQRSEQRVQQQQQ 151
+ +I A+ +LGF Y++ +K L + + + E L IP+ E+ ++QQQ+
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPE----EELLRQQQE 124
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + RI+K+ +P ISK+A+ + S F+ + T A++ + KRKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYREIEGEKLNIPKQQRSEQRVQQQQQQQQSH 156
D++ A+ + F+ ++ PLK L YR E K +Q++ ++ + ++Q +S
Sbjct: 66 ASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQDKSR 122
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + RI+K+ +P ISK+A+ + S F+ + T A++ + KRKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYR 127
D++ A+ + F+ +V PLK L YR
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + RI+K+ +P ISK+A+ + S F+ + T A++ + KRKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYR 127
D++ A+ + F+ +V PLK L YR
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + RI+K+ +P ISK+A+ + S F+ + T A++ + KRKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYR 127
D++ A+ + F+ +V PLK L YR
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP A V +++ ++P + +K+A++ + EC EFI V+ EA++ C++E +KTI + I
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 104 IWAITTLGFEDYVA 117
I A+ L F++Y+A
Sbjct: 72 IKALENLEFKEYIA 85
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 99
+D LP A + RI+K+ +P ISK+A+ + S F+ + T A++ + KRKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 100 GDDIIWAITTLGFEDYVAPLKLYLSKYR 127
D++ A+ + F+ +V PLK L YR
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 29 NSNNNNHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88
N + + S+ D LP + + R++K V+P + K+A + + + F+SF+T + +
Sbjct: 2 NQDKSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGE 61
Query: 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKYR-EIEGEKLNIP 137
RK + D++ A+ + + ++ LK +L Y ++ ++L +P
Sbjct: 62 IATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAYELALKEKRLKLP 111
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP A V +++ +++ + +KDA+E + EFI ++ AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 104 IWAITTLGFEDYVAPLKLYLSKYR 127
I A+ L + +++ L+ L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 37 SKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRK 96
S+ QD LP A V RI+K +P +K+++ + + +I ++T + D R
Sbjct: 2 SESQD--LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRS 59
Query: 97 TINGDDIIWAITTLGFEDYVAPLKLYLSKYR 127
TI+ D+ AI + FE++ L+ YL+ +
Sbjct: 60 TISPKDVFQAIEEIDFENFKPQLEEYLAALK 90
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 29 NSNNNNHNSKEQ----DRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTG 84
NS N +K++ D P + + + K+ +P + ISKDA +Q + F+S++
Sbjct: 18 NSAGNTIQAKQKYSIDDLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMAS 77
Query: 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYV 116
+ + RK I D+ A+ + +V
Sbjct: 78 HGNASAEAGGRKKITPQDVFVALKDVDLAQFV 109
>sp|Q60264|HJA4_METJA Probable archaeal histone 4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL29 PE=3 SV=1
Length = 67
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP+A RI+KKV G ++S+ A E + E E + EA D + KRKT+ +DI
Sbjct: 4 LPVAPFERILKKV--GAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVEDI 61
Query: 104 IWAI 107
A+
Sbjct: 62 KLAL 65
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA VGRI+K G ++S DA++ + + + E + EA + RKT+ DI
Sbjct: 4 LPIAPVGRIIKNA--GAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASDI 61
Query: 104 IWAI 107
A+
Sbjct: 62 EMAV 65
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LP+A V R+++K G ++S+DAK + + + E+ + +A++ + RKT+ DDI
Sbjct: 8 LPLAPVERLLRK--AGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 104 IWAITTL 110
A+ L
Sbjct: 66 KLALREL 72
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA VGRI+K G +IS DAKE + + + E ++ +A + + RKT+ DI
Sbjct: 4 LPIAPVGRIIKNA--GAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATDI 61
Query: 104 IWAITTL 110
A L
Sbjct: 62 EMAAKQL 68
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103
LPIA VGRI+K G +IS DAKE + + + E + +A + + RKT+ +DI
Sbjct: 4 LPIAPVGRIIKNA--GAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAEDI 61
Query: 104 IWAITT 109
A+ +
Sbjct: 62 EMAVKS 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,492,838
Number of Sequences: 539616
Number of extensions: 3528131
Number of successful extensions: 79389
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 39038
Number of HSP's gapped (non-prelim): 22111
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)