Query 047516
Match_columns 214
No_of_seqs 148 out of 653
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 6.1E-32 2.1E-36 227.9 12.0 146 37-183 9-165 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 5.8E-29 2E-33 199.4 11.9 104 38-141 4-107 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 7.7E-29 2.6E-33 187.4 11.3 92 37-128 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.8 3.2E-21 1.1E-25 141.3 8.1 67 42-109 3-69 (76)
5 1f1e_A Histone fold protein; a 99.8 1.6E-20 5.6E-25 154.9 8.7 74 43-117 4-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 7.9E-20 2.7E-24 143.3 9.4 87 40-128 4-90 (111)
7 1b67_A Protein (histone HMFA); 99.8 2.8E-19 9.4E-24 127.5 8.1 66 43-110 2-67 (68)
8 2hue_C Histone H4; mini beta s 99.7 1.1E-17 3.9E-22 124.7 7.3 78 36-115 3-80 (84)
9 1id3_B Histone H4; nucleosome 99.7 2.8E-17 9.7E-22 127.0 8.7 80 34-115 19-98 (102)
10 2byk_A Chrac-16; nucleosome sl 99.7 5.2E-18 1.8E-22 137.9 4.4 95 39-134 15-113 (140)
11 1f1e_A Histone fold protein; a 99.7 4.7E-17 1.6E-21 134.3 9.4 73 35-109 74-146 (154)
12 1tzy_D Histone H4-VI; histone- 99.7 3.3E-16 1.1E-20 120.7 8.9 79 35-115 21-99 (103)
13 1ku5_A HPHA, archaeal histon; 99.6 4E-16 1.4E-20 112.1 8.1 64 43-108 6-69 (70)
14 2yfw_B Histone H4, H4; cell cy 99.6 4.5E-16 1.5E-20 120.1 8.0 79 35-115 21-99 (103)
15 4g92_C HAPE; transcription fac 99.6 5.4E-16 1.9E-20 122.5 8.1 77 39-116 37-113 (119)
16 1n1j_B NF-YC; histone-like PAI 99.6 7.9E-16 2.7E-20 117.3 7.9 80 37-117 13-92 (97)
17 1jfi_A Transcription regulator 99.4 4.7E-13 1.6E-17 102.3 5.9 77 40-117 8-84 (98)
18 2hue_B Histone H3; mini beta s 99.4 3.1E-12 1.1E-16 94.8 9.0 71 41-111 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.3 5E-12 1.7E-16 97.8 7.1 72 37-108 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.3 1.7E-11 5.7E-16 91.9 8.4 70 42-111 2-76 (82)
21 3nqu_A Histone H3-like centrom 99.2 1.3E-11 4.5E-16 100.5 8.0 76 37-112 55-135 (140)
22 1tzy_C Histone H3; histone-fol 99.2 1.4E-11 4.7E-16 100.0 7.0 75 37-111 56-133 (136)
23 3r45_A Histone H3-like centrom 99.2 1E-11 3.6E-16 102.7 6.3 74 37-110 71-149 (156)
24 1taf_B TFIID TBP associated fa 99.0 9.7E-10 3.3E-14 80.1 8.7 64 43-108 6-69 (70)
25 3vh5_A CENP-S; histone fold, c 98.9 4.2E-09 1.4E-13 85.8 7.9 77 48-130 24-101 (140)
26 4dra_A Centromere protein S; D 98.8 7.7E-09 2.6E-13 81.6 7.4 77 48-130 32-109 (113)
27 1taf_A TFIID TBP associated fa 98.8 2E-08 6.7E-13 72.7 8.5 61 47-109 5-65 (68)
28 2ly8_A Budding yeast chaperone 98.8 1.1E-08 3.7E-13 81.6 7.4 54 62-115 64-117 (121)
29 3v9r_A MHF1, uncharacterized p 98.8 1.4E-08 4.6E-13 77.2 7.4 62 48-109 17-79 (90)
30 3b0b_B CENP-S, centromere prot 98.8 1.6E-08 5.6E-13 78.9 7.8 76 48-129 24-100 (107)
31 2l5a_A Histone H3-like centrom 98.7 1.7E-08 5.9E-13 88.2 5.6 61 49-111 167-227 (235)
32 2nqb_C Histone H2A; nucleosome 98.6 2E-07 6.7E-12 74.1 8.5 69 39-108 19-87 (123)
33 2l5a_A Histone H3-like centrom 98.6 6.8E-08 2.3E-12 84.4 6.2 71 41-111 9-85 (235)
34 2f8n_G Core histone macro-H2A. 98.5 2.4E-07 8.3E-12 73.3 8.2 69 39-108 18-86 (120)
35 1tzy_A Histone H2A-IV; histone 98.5 2.8E-07 9.5E-12 73.8 8.4 69 39-108 21-89 (129)
36 1id3_C Histone H2A.1; nucleoso 98.5 2.5E-07 8.4E-12 74.3 8.0 70 38-108 20-89 (131)
37 1f66_C Histone H2A.Z; nucleoso 98.5 3.8E-07 1.3E-11 73.0 8.4 70 39-108 23-92 (128)
38 2f8n_K Histone H2A type 1; nuc 98.5 4.6E-07 1.6E-11 74.4 8.3 69 39-108 40-108 (149)
39 2jss_A Chimera of histone H2B. 98.3 1.7E-06 5.8E-11 72.9 8.2 70 39-108 101-170 (192)
40 2nqb_D Histone H2B; nucleosome 98.2 3.8E-06 1.3E-10 67.1 8.0 63 47-110 37-99 (123)
41 1tzy_B Histone H2B; histone-fo 98.2 5E-06 1.7E-10 66.6 7.9 63 47-110 40-102 (126)
42 1h3o_B Transcription initiatio 97.9 5.7E-05 1.9E-09 55.7 8.8 66 43-109 5-70 (76)
43 4dra_E Centromere protein X; D 97.9 8.4E-05 2.9E-09 55.8 9.2 69 41-109 10-79 (84)
44 2jss_A Chimera of histone H2B. 97.9 4.7E-05 1.6E-09 64.0 8.5 62 47-109 7-68 (192)
45 3b0b_C CENP-X, centromere prot 97.8 0.00011 3.7E-09 54.7 8.7 71 39-109 4-75 (81)
46 2ly8_A Budding yeast chaperone 97.5 0.0003 1E-08 55.9 7.9 89 43-133 1-98 (121)
47 1bh9_B TAFII28; histone fold, 97.3 0.0011 3.6E-08 50.0 8.3 67 43-111 16-83 (89)
48 3v9r_B MHF2, uncharacterized p 96.4 0.0078 2.7E-07 45.5 6.6 49 43-91 1-50 (88)
49 3uk6_A RUVB-like 2; hexameric 92.2 0.37 1.3E-05 41.2 7.2 66 44-109 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 90.2 1.1 3.8E-05 45.5 9.5 68 40-109 101-168 (1049)
51 1fnn_A CDC6P, cell division co 85.3 4 0.00014 34.5 8.6 76 44-119 193-283 (389)
52 2c9o_A RUVB-like 1; hexameric 83.0 3.3 0.00011 37.4 7.6 66 44-109 366-436 (456)
53 2v1u_A Cell division control p 82.4 1.9 6.5E-05 36.3 5.4 67 45-111 202-277 (387)
54 3kw6_A 26S protease regulatory 79.8 2.2 7.5E-05 29.4 4.1 42 68-109 27-72 (78)
55 2qby_A CDC6 homolog 1, cell di 76.3 5.9 0.0002 33.1 6.5 70 44-113 197-275 (386)
56 1g8p_A Magnesium-chelatase 38 75.1 13 0.00044 31.0 8.3 50 60-109 265-321 (350)
57 1r4v_A Hypothetical protein AQ 73.8 3.1 0.00011 34.7 4.0 86 32-129 13-100 (171)
58 3k1j_A LON protease, ATP-depen 73.6 14 0.00048 34.6 9.0 49 61-109 313-374 (604)
59 2dzn_B 26S protease regulatory 71.5 4.6 0.00016 28.2 4.0 31 80-110 38-68 (82)
60 3vlf_B 26S protease regulatory 71.4 5 0.00017 28.6 4.2 43 69-111 26-72 (88)
61 1wwi_A Hypothetical protein TT 70.5 6.6 0.00022 32.0 5.2 59 43-103 2-60 (148)
62 2krk_A 26S protease regulatory 69.9 5.3 0.00018 28.6 4.1 31 79-109 50-80 (86)
63 3aji_B S6C, proteasome (prosom 69.6 4.9 0.00017 27.9 3.8 33 79-111 40-72 (83)
64 2r44_A Uncharacterized protein 69.3 24 0.00082 29.6 8.7 50 60-109 224-296 (331)
65 1in4_A RUVB, holliday junction 65.9 19 0.00064 30.9 7.5 69 46-114 182-254 (334)
66 2kru_A Light-independent proto 65.8 5.5 0.00019 28.1 3.3 52 59-111 2-54 (63)
67 2qby_B CDC6 homolog 3, cell di 64.2 11 0.00038 31.8 5.6 66 44-111 197-271 (384)
68 1y1x_A Leishmania major homolo 64.0 46 0.0016 25.3 12.6 41 84-124 96-136 (191)
69 3fwb_A Cell division control p 62.0 40 0.0014 24.0 9.2 38 86-123 101-138 (161)
70 3bos_A Putative DNA replicatio 60.5 28 0.00097 26.7 7.0 62 46-108 176-241 (242)
71 1khy_A CLPB protein; alpha hel 60.2 26 0.00087 26.1 6.5 37 62-110 5-41 (148)
72 2l09_A ASR4154 protein; proto- 58.9 6.9 0.00024 27.5 2.8 50 61-111 3-53 (62)
73 3fh2_A Probable ATP-dependent 56.7 17 0.00058 27.5 5.0 37 62-110 6-42 (146)
74 2y1q_A CLPC N-domain, negative 56.2 21 0.00072 26.7 5.4 37 62-110 5-41 (150)
75 2chg_A Replication factor C sm 56.0 18 0.00061 27.1 5.0 63 44-108 161-224 (226)
76 3h4m_A Proteasome-activating n 55.3 19 0.00065 29.3 5.4 32 78-109 226-257 (285)
77 3dtp_E RLC, myosin regulatory 51.6 78 0.0027 24.2 9.9 25 88-113 133-157 (196)
78 3fes_A ATP-dependent CLP endop 51.1 34 0.0012 25.8 5.9 38 61-110 6-43 (145)
79 3pm8_A PFCDPK2, calcium-depend 49.2 40 0.0014 26.0 6.2 79 44-124 22-100 (197)
80 1k6k_A ATP-dependent CLP prote 48.8 18 0.00061 26.9 3.9 24 84-107 11-34 (143)
81 5pal_A Parvalbumin; calcium-bi 47.8 63 0.0022 22.0 6.9 82 43-126 5-89 (109)
82 2i7a_A Calpain 13; calcium-dep 46.9 96 0.0033 23.8 8.9 42 84-126 79-124 (174)
83 2ovk_C Myosin catalytic light 46.5 49 0.0017 23.8 6.0 40 85-124 89-128 (159)
84 1njg_A DNA polymerase III subu 46.4 38 0.0013 25.5 5.5 63 44-107 185-248 (250)
85 3b9p_A CG5977-PA, isoform A; A 45.4 68 0.0023 26.1 7.3 60 61-120 207-282 (297)
86 4ds7_A Calmodulin, CAM; protei 45.3 75 0.0025 22.1 10.1 41 86-126 89-129 (147)
87 2ovk_B RLC, myosin regulatory 45.3 65 0.0022 23.0 6.5 39 86-124 90-128 (153)
88 3fes_A ATP-dependent CLP endop 45.2 36 0.0012 25.6 5.2 40 60-111 79-118 (145)
89 3vfd_A Spastin; ATPase, microt 44.4 1.2E+02 0.004 26.3 9.0 68 46-113 284-368 (389)
90 1lv7_A FTSH; alpha/beta domain 44.0 31 0.0011 27.7 4.9 33 78-110 220-252 (257)
91 3mse_B Calcium-dependent prote 43.4 1E+02 0.0034 23.0 8.6 53 60-113 16-71 (180)
92 3fh2_A Probable ATP-dependent 42.8 81 0.0028 23.6 6.9 38 61-110 80-117 (146)
93 1w5s_A Origin recognition comp 41.8 80 0.0027 26.6 7.4 68 44-111 215-294 (412)
94 4b4t_K 26S protease regulatory 41.7 19 0.00065 33.1 3.6 42 68-109 368-413 (428)
95 4b4t_I 26S protease regulatory 41.0 27 0.00092 32.6 4.6 58 51-109 360-422 (437)
96 4b4t_L 26S protease subunit RP 40.6 28 0.00095 32.2 4.6 32 78-109 390-421 (437)
97 2f3n_A SH3 and multiple ankyri 40.4 24 0.00081 24.4 3.2 23 98-120 5-27 (76)
98 3d8b_A Fidgetin-like protein 1 40.0 70 0.0024 27.5 6.9 51 61-111 269-335 (357)
99 4b4t_J 26S protease regulatory 39.9 29 0.00099 31.9 4.6 33 77-109 356-388 (405)
100 3ox6_A Calcium-binding protein 39.5 94 0.0032 21.6 10.9 40 85-124 92-132 (153)
101 4b4t_H 26S protease regulatory 39.3 26 0.0009 32.9 4.2 41 69-109 405-449 (467)
102 1uxc_A FRUR (1-57), fructose r 38.7 43 0.0015 22.7 4.3 35 43-78 11-45 (65)
103 1tiz_A Calmodulin-related prot 38.1 67 0.0023 19.5 5.0 35 88-122 8-42 (67)
104 3pfi_A Holliday junction ATP-d 37.7 1E+02 0.0035 25.5 7.4 69 45-113 185-257 (338)
105 4b4t_M 26S protease regulatory 36.8 29 0.00098 32.0 4.0 34 77-110 389-422 (434)
106 3bq7_A Diacylglycerol kinase d 36.6 29 0.00099 24.3 3.2 24 97-120 9-32 (81)
107 3f8t_A Predicted ATPase involv 35.7 99 0.0034 29.5 7.6 67 43-109 393-482 (506)
108 3pvs_A Replication-associated 35.6 57 0.002 29.6 5.8 67 44-110 165-244 (447)
109 3zri_A CLPB protein, CLPV; cha 35.5 36 0.0012 27.1 4.0 36 62-109 24-59 (171)
110 1hqc_A RUVB; extended AAA-ATPa 35.5 52 0.0018 27.0 5.1 70 44-113 168-241 (324)
111 2kz2_A Calmodulin, CAM; TR2C, 35.4 87 0.003 21.3 5.6 37 88-124 36-72 (94)
112 3qrx_A Centrin; calcium-bindin 34.8 1.2E+02 0.0043 21.7 10.7 39 86-124 106-144 (169)
113 3f9v_A Minichromosome maintena 34.8 15 0.0005 34.8 1.8 48 62-109 521-586 (595)
114 2lv7_A Calcium-binding protein 32.6 48 0.0016 23.6 3.9 39 86-124 41-79 (100)
115 3sg6_A Gcamp2, myosin light ch 32.3 2E+02 0.0069 26.5 9.0 42 85-126 389-430 (450)
116 3nbx_X ATPase RAVA; AAA+ ATPas 32.2 2.7E+02 0.0092 25.8 9.9 56 47-104 212-280 (500)
117 2bl0_C Myosin regulatory light 31.6 1.3E+02 0.0044 20.9 9.3 39 86-124 84-122 (142)
118 1wlz_A DJBP, CAP-binding prote 31.5 1.2E+02 0.0041 20.4 6.8 36 85-120 28-63 (105)
119 3fs7_A Parvalbumin, thymic; ca 30.3 1.3E+02 0.0043 20.3 7.7 80 43-124 6-88 (109)
120 2joj_A Centrin protein; N-term 29.9 75 0.0026 20.0 4.2 25 89-113 15-39 (77)
121 3bow_A Calpain-2 catalytic sub 29.6 2.5E+02 0.0085 26.9 9.4 51 76-126 595-650 (714)
122 2d8c_A Phosphatidylcholine:cer 29.6 23 0.00077 26.3 1.7 23 97-119 19-41 (97)
123 1avs_A Troponin C; muscle cont 29.6 1.2E+02 0.004 19.9 5.3 37 88-124 27-63 (90)
124 1ixz_A ATP-dependent metallopr 29.5 43 0.0015 26.8 3.5 57 50-107 192-253 (254)
125 2qac_A Myosin A tail domain in 29.5 1.5E+02 0.005 20.8 8.8 81 43-126 31-129 (146)
126 3i5g_C Myosin catalytic light 29.5 1.2E+02 0.0041 22.7 5.9 38 85-122 89-126 (159)
127 1pva_A Parvalbumin; calcium bi 28.8 1.2E+02 0.004 20.5 5.3 80 43-124 6-88 (110)
128 3sjs_A URE3-BP sequence specif 28.5 2.1E+02 0.0073 22.4 10.0 81 42-127 82-163 (220)
129 3h4s_E KCBP interacting Ca2+-b 28.4 82 0.0028 22.8 4.7 28 85-112 44-71 (135)
130 1bu3_A Calcium-binding protein 28.3 1.4E+02 0.0047 20.1 8.2 82 42-125 5-89 (109)
131 1jr3_D DNA polymerase III, del 28.1 1E+02 0.0034 26.0 5.7 65 44-108 142-207 (343)
132 2kn2_A Calmodulin; S MAPK phos 28.1 1.3E+02 0.0044 19.7 5.3 23 91-113 19-41 (92)
133 2mys_C Myosin; muscle protein, 27.9 1.5E+02 0.0052 20.5 9.9 27 87-113 91-117 (149)
134 2ktg_A Calmodulin, putative; e 27.8 83 0.0028 20.3 4.2 37 88-124 21-57 (85)
135 3zri_A CLPB protein, CLPV; cha 27.7 90 0.0031 24.8 5.1 36 61-108 97-133 (171)
136 2qp9_X Vacuolar protein sortin 27.7 2.9E+02 0.0099 23.6 8.9 18 96-113 317-334 (355)
137 3ro3_B Minsc, peptide of prote 27.2 5.2 0.00018 22.8 -1.7 8 207-214 6-13 (22)
138 1kw4_A Polyhomeotic; SAM domai 27.0 45 0.0015 24.1 2.9 24 97-120 16-40 (89)
139 1iy2_A ATP-dependent metallopr 26.9 51 0.0017 27.0 3.6 57 50-107 216-277 (278)
140 2lfc_A Fumarate reductase, fla 26.8 1.4E+02 0.0047 23.1 5.9 34 97-132 92-125 (160)
141 2pvb_A Protein (parvalbumin); 26.7 1.5E+02 0.005 19.9 7.6 80 44-125 6-88 (108)
142 3u0k_A Rcamp; fluorescent prot 26.3 4E+02 0.014 24.8 10.0 37 86-122 380-416 (440)
143 2aao_A CDPK, calcium-dependent 26.1 1.8E+02 0.0061 20.7 7.1 29 85-113 103-131 (166)
144 1j7q_A CAVP, calcium vector pr 25.9 97 0.0033 20.1 4.3 25 89-113 22-46 (86)
145 1pul_A Hypothetical protein C3 25.9 1.8E+02 0.0062 22.7 6.4 53 42-110 40-93 (125)
146 1eex_A Propanediol dehydratase 25.9 2E+02 0.0068 27.5 7.7 90 31-123 373-493 (554)
147 1s6i_A CDPK, calcium-dependent 25.5 1.9E+02 0.0063 21.9 6.4 31 84-114 85-115 (188)
148 1m45_A MLC1P, myosin light cha 25.4 1.4E+02 0.0048 20.8 5.4 26 88-113 90-115 (148)
149 3eie_A Vacuolar protein sortin 25.3 90 0.0031 26.2 4.9 18 96-113 284-301 (322)
150 1s6j_A CDPK, calcium-dependent 24.8 87 0.003 20.2 3.9 36 89-124 31-66 (87)
151 3i5g_B Myosin regulatory light 24.7 2.1E+02 0.0073 21.1 6.8 55 58-124 5-59 (153)
152 1k6k_A ATP-dependent CLP prote 24.6 85 0.0029 23.0 4.2 37 61-109 78-114 (143)
153 2qz4_A Paraplegin; AAA+, SPG7, 24.6 22 0.00074 28.3 0.8 32 78-109 217-248 (262)
154 1sxj_D Activator 1 41 kDa subu 24.4 56 0.0019 27.0 3.4 66 44-110 192-263 (353)
155 3qrx_A Centrin; calcium-bindin 24.1 2E+02 0.0068 20.5 6.7 22 92-113 39-60 (169)
156 2pmy_A RAS and EF-hand domain- 24.1 1.2E+02 0.0041 20.3 4.6 25 88-112 34-58 (91)
157 3j04_B Myosin regulatory light 24.0 1.6E+02 0.0054 20.4 5.4 38 87-124 82-119 (143)
158 1exr_A Calmodulin; high resolu 23.9 1.9E+02 0.0066 20.3 10.6 40 85-124 87-126 (148)
159 1yfs_A Alanyl-tRNA synthetase; 23.8 4.6E+02 0.016 24.7 10.2 24 90-113 371-394 (465)
160 2y1q_A CLPC N-domain, negative 23.7 99 0.0034 22.9 4.4 37 61-109 78-114 (150)
161 2znd_A Programmed cell death p 23.5 2.1E+02 0.0073 20.7 9.6 77 44-125 41-118 (172)
162 3k21_A PFCDPK3, calcium-depend 23.3 54 0.0019 25.0 2.9 28 86-113 57-84 (191)
163 2aao_A CDPK, calcium-dependent 23.1 1.9E+02 0.0066 20.5 5.9 34 89-122 35-68 (166)
164 3ox6_A Calcium-binding protein 23.1 1.9E+02 0.0065 19.9 5.9 21 93-113 23-43 (153)
165 1exr_A Calmodulin; high resolu 23.0 1.3E+02 0.0046 21.2 4.9 24 91-114 20-43 (148)
166 1khy_A CLPB protein; alpha hel 22.6 95 0.0032 22.8 4.1 25 84-108 92-116 (148)
167 3pxg_A Negative regulator of g 22.3 1.5E+02 0.0053 26.6 6.2 38 62-111 5-42 (468)
168 2jnf_A Troponin C; stretch act 22.2 2.1E+02 0.0072 20.1 9.8 27 86-112 96-122 (158)
169 2opo_A Polcalcin CHE A 3; calc 22.1 1.3E+02 0.0044 19.4 4.3 23 89-111 19-41 (86)
170 1bh9_A TAFII18; histone fold, 21.9 1.7E+02 0.0057 18.8 5.7 39 49-88 6-44 (45)
171 2mys_C Myosin; muscle protein, 21.2 1.8E+02 0.0061 20.1 5.2 20 94-113 21-40 (149)
172 1ofh_A ATP-dependent HSL prote 21.0 1.2E+02 0.0041 24.4 4.7 51 61-111 233-300 (310)
173 1k9u_A Polcalcin PHL P 7; poll 20.7 1.3E+02 0.0045 18.9 4.1 17 95-111 17-33 (78)
174 1jr3_A DNA polymerase III subu 20.5 1.3E+02 0.0045 24.9 5.0 65 44-109 178-243 (373)
175 2bl0_B Myosin regulatory light 20.4 1E+02 0.0035 21.3 3.7 29 85-113 80-108 (145)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=6.1e-32 Score=227.91 Aligned_cols=146 Identities=23% Similarity=0.473 Sum_probs=102.0
Q ss_pred CccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcch
Q 047516 37 SKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYV 116 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi 116 (214)
...+|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||+.|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 4568999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCchh----hhHHHHHHHHHHHhhh--h---ccccCCCCCccc--ccCCCCCCCCcccCC
Q 047516 117 APLKLYLSKYREIEGEKLNIPKQ----QRSEQRVQQQQQQQQS--H---EHEQQLPYSSVY--SSTNLMSQSPFMATD 183 (214)
Q Consensus 117 ~~Lk~~L~~yre~~~~K~~~~~~----~~~E~~~~~q~~~~~~--~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 183 (214)
++|+.+|++||+....|+....+ ..+|++|.++||.+-. + ......|+...+ +...++++|+|+.++
T Consensus 88 ~~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Qqelf~~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASASN 165 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccccccccch
Confidence 99999999999987665332111 1245555554442211 1 111223554333 677899999999988
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=5.8e-29 Score=199.41 Aligned_cols=104 Identities=31% Similarity=0.531 Sum_probs=88.1
Q ss_pred ccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchH
Q 047516 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVA 117 (214)
Q Consensus 38 k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~ 117 (214)
+.+|+.||+|+|.||||.++|++.+||+||+.+|++||++||.||+++|+++|.+++||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhh
Q 047516 118 PLKLYLSKYREIEGEKLNIPKQQR 141 (214)
Q Consensus 118 ~Lk~~L~~yre~~~~K~~~~~~~~ 141 (214)
+|+.+|.+||+....|+..++.+.
T Consensus 84 ~lk~~l~~yr~~~~~kk~~~~~~~ 107 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKESKASKK 107 (128)
T ss_dssp HHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhhhhhhhccc
Confidence 999999999999988876544333
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=7.7e-29 Score=187.44 Aligned_cols=92 Identities=71% Similarity=1.162 Sum_probs=86.0
Q ss_pred CccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcch
Q 047516 37 SKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYV 116 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi 116 (214)
.+++|+.||+|+|.||||+.+|++.+||+||+++|++|+++||.+|+.+|+++|.++|||||+++||..||+.|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 047516 117 APLKLYLSKYRE 128 (214)
Q Consensus 117 ~~Lk~~L~~yre 128 (214)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.84 E-value=3.2e-21 Score=141.29 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=64.0
Q ss_pred ccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 42 RFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 42 l~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..||+|+|.||||+++| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||+.|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 57999999999999998 79999999999999999999999999999999999999999999999864
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.82 E-value=1.6e-20 Score=154.94 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=71.8
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVA 117 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~ 117 (214)
.||+++|.||||++||. .|||+||+++|++|+++|+.+|+++|+++|.|+|||||+++||++||..|||++|++
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 69999999999999975 999999999999999999999999999999999999999999999999999999875
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.81 E-value=7.9e-20 Score=143.25 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=79.1
Q ss_pred ccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHH
Q 047516 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPL 119 (214)
Q Consensus 40 ~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~L 119 (214)
+|+.||+++|+||||.. +..+||+|++++|.+|+.+|+..|+.+|..+|+|+|||||+++||+.||+++|+..|..++
T Consensus 4 ~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l 81 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPL 81 (111)
T ss_dssp ------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCH
T ss_pred CCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccH
Confidence 67899999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 047516 120 KLYLSKYRE 128 (214)
Q Consensus 120 k~~L~~yre 128 (214)
..++++|+.
T Consensus 82 ~~l~~~~lp 90 (111)
T 3b0c_T 82 HVLVERHLP 90 (111)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCc
Confidence 999999943
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.79 E-value=2.8e-19 Score=127.53 Aligned_cols=66 Identities=33% Similarity=0.485 Sum_probs=64.0
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|+++|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 7899999999999999999999999999999999999999999999999876
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.71 E-value=1.1e-17 Score=124.70 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcc
Q 047516 36 NSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDY 115 (214)
Q Consensus 36 ~~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dy 115 (214)
.++.....||+++|.||+|.. +..|||+|+.++|.+|+++|+..|+.+|.++|+|+|||||+++||..||+.+|+..|
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~--Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccccCCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 356677789999999999999 778999999999999999999999999999999999999999999999999998776
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.70 E-value=2.8e-17 Score=127.02 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCCCccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 34 NHNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 34 ~~~~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.+.++.....||+++|.||||.. +..+||.|+.++|++|+++|+..|+.+|.++|+|++||||+++||.+||+.+||.
T Consensus 19 ~k~~r~~i~~ip~~~I~Rlar~~--Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~ 96 (102)
T 1id3_B 19 RKILRDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 96 (102)
T ss_dssp -----CCGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC
T ss_pred HHHHHhccCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 35567788889999999999998 6789999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 047516 114 DY 115 (214)
Q Consensus 114 dy 115 (214)
.|
T Consensus 97 lY 98 (102)
T 1id3_B 97 LY 98 (102)
T ss_dssp EE
T ss_pred CC
Confidence 77
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.70 E-value=5.2e-18 Score=137.90 Aligned_cols=95 Identities=19% Similarity=0.353 Sum_probs=63.3
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccChHHHHHHHHH---cCCCc
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKC-QREKRKTINGDDIIWAITT---LGFED 114 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a-~~~kRKTI~~eDVl~ALe~---LGF~d 114 (214)
..++.||+++|.||||.. |+..+|+++|..+|++|++.||.+|+..|+.+| ...+||||+++||..|+.. ++|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 466789999999999999 888899999999999999999999999999999 9999999999999999985 56666
Q ss_pred chHHHHHHHHHHHHHHhhhc
Q 047516 115 YVAPLKLYLSKYREIEGEKL 134 (214)
Q Consensus 115 yi~~Lk~~L~~yre~~~~K~ 134 (214)
++-+.+.++.+|++..+.|+
T Consensus 94 divP~ki~l~~~~~~~~~~~ 113 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNR 113 (140)
T ss_dssp TTSCSCC-------------
T ss_pred ccccchhhHHHHHHHHHhcc
Confidence 66689999999999876654
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.70 E-value=4.7e-17 Score=134.29 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=69.1
Q ss_pred CCCccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 35 HNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 35 ~~~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+..+.+|+.||+++|.||||+. +..|||+||+++|++|+++|+.+|+++|+++|+|+|||||+++||++||+.
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3456688999999999999999 889999999999999999999999999999999999999999999999975
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.65 E-value=3.3e-16 Score=120.74 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=74.1
Q ss_pred CCCccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCc
Q 047516 35 HNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFED 114 (214)
Q Consensus 35 ~~~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~d 114 (214)
+..++.+..||+++|.||+|.. +..|||.||.++|.+|+++|+..|+.+|..+|+|++||||+++||.+||+.+||+.
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~--G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~l 98 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 98 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEE
T ss_pred cchhhhcccCCHHHHHHHHHHc--CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCC
Confidence 4467778889999999999999 56799999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 047516 115 Y 115 (214)
Q Consensus 115 y 115 (214)
|
T Consensus 99 Y 99 (103)
T 1tzy_D 99 Y 99 (103)
T ss_dssp E
T ss_pred c
Confidence 6
No 13
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.64 E-value=4e-16 Score=112.09 Aligned_cols=64 Identities=31% Similarity=0.483 Sum_probs=62.2
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
.||+++|.||+|+. +..|||+++..+|++|++.|+..|+.+|+.+|+|+|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999998 78999999999999999999999999999999999999999999999985
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.64 E-value=4.5e-16 Score=120.06 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=64.7
Q ss_pred CCCccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCc
Q 047516 35 HNSKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFED 114 (214)
Q Consensus 35 ~~~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~d 114 (214)
+.+++.+..||+++|.||+|.. +..|||.||.++|.+++++|+..|+.+|..+|+|++||||+++||.+||+.+||+.
T Consensus 21 ~~~r~~~~gip~~~I~Rlar~~--G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~l 98 (103)
T 2yfw_B 21 KILRDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTL 98 (103)
T ss_dssp ---------CCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred hhhhhhhccCCHHHHHHHHHHc--CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCC
Confidence 4457777789999999999999 66799999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 047516 115 Y 115 (214)
Q Consensus 115 y 115 (214)
|
T Consensus 99 Y 99 (103)
T 2yfw_B 99 Y 99 (103)
T ss_dssp -
T ss_pred c
Confidence 6
No 15
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.63 E-value=5.4e-16 Score=122.46 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=69.6
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcch
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYV 116 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi 116 (214)
.....||+|+|.||||.. |+..+||+||..+|++|+++||.+|+.+|+..|...+||||+++||..|++..+..+|.
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 345579999999999987 88899999999999999999999999999999999999999999999999876544453
No 16
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.62 E-value=7.9e-16 Score=117.32 Aligned_cols=80 Identities=28% Similarity=0.289 Sum_probs=69.2
Q ss_pred CccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcch
Q 047516 37 SKEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYV 116 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi 116 (214)
....++.||+|+|.||||.. |+..+||+||..+|.+|+++||.+|+.+|...|.+.|||||+++||..|++..++.+|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34466789999999999999 66689999999999999999999999999999999999999999999999988877776
Q ss_pred H
Q 047516 117 A 117 (214)
Q Consensus 117 ~ 117 (214)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.38 E-value=4.7e-13 Score=102.32 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=60.2
Q ss_pred ccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchH
Q 047516 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVA 117 (214)
Q Consensus 40 ~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~ 117 (214)
....||.++|.||||.. ++..+||.+|..+|.++++.|+.+|+..|...|.+.+||||+++||..|++.-+..+|+.
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 45689999999999987 566799999999999999999999999999999999999999999999998755555543
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.35 E-value=3.1e-12 Score=94.82 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=65.5
Q ss_pred cccCchhHHHHHHhhcC---CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 41 DRFLPIANVGRIMKKVI---PGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 41 Dl~LPkA~V~RImK~~L---P~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
++.||++++.||+|++. .++.|++.+|..+||++++.|+..|..+|+.+|.|+||+||+++||..|.+.-|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 57899999999999994 367999999999999999999999999999999999999999999999987655
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.29 E-value=5e-12 Score=97.78 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=60.5
Q ss_pred CccccccCchhHHHHHHhhcCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 37 SKEQDRFLPIANVGRIMKKVIPG------NGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP~------~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
++++++.||++++.||+|++..+ +.|++.+|+.+||++++.|+..|..+||.+|.|+||+||+++||-.|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 57899999999999999999532 7899999999999999999999999999999999999999999998864
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.26 E-value=1.7e-11 Score=91.91 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=64.4
Q ss_pred ccCchhHHHHHHhhcCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 42 RFLPIANVGRIMKKVIP-----GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 42 l~LPkA~V~RImK~~LP-----~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+.||++++.||+|++.. .+.|++.+|..+||++++.|+..|..+||.+|.|+||+||+++||-.|...-|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57899999999999952 36899999999999999999999999999999999999999999999987554
No 21
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.25 E-value=1.3e-11 Score=100.54 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred CccccccCchhHHHHHHhhcCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 37 SKEQDRFLPIANVGRIMKKVIP-----GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP-----~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
++.+++.||++.+.||||++.. .+.|++.+|+++||+++|.|+..|+.+||.+|.|+||+||+++||..|+..-|
T Consensus 55 Qkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 55 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp ----CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 4789999999999999999952 26899999999999999999999999999999999999999999999987666
Q ss_pred C
Q 047516 112 F 112 (214)
Q Consensus 112 F 112 (214)
.
T Consensus 135 ~ 135 (140)
T 3nqu_A 135 L 135 (140)
T ss_dssp -
T ss_pred c
Confidence 4
No 22
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.23 E-value=1.4e-11 Score=99.97 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=69.6
Q ss_pred CccccccCchhHHHHHHhhcC---CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 37 SKEQDRFLPIANVGRIMKKVI---PGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~L---P~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
++++++.||++++.||||++. -++.|++.+|+++||++++.|+..|..+||.+|.|+||+||+++||-.|+..-|
T Consensus 56 Qkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 56 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 378999999999999999994 368999999999999999999999999999999999999999999999987654
No 23
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=102.68 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=65.2
Q ss_pred CccccccCchhHHHHHHhhcCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 37 SKEQDRFLPIANVGRIMKKVIP-----GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 37 ~k~~Dl~LPkA~V~RImK~~LP-----~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
++.+++.||++.+.||||++.. .+.|++.+|+++||+++|.|+..|+.+||.+|.|+||+||+++||..|+..-
T Consensus 71 QkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 71 QKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp ----CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 4789999999999999999952 2689999999999999999999999999999999999999999999998643
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.03 E-value=9.7e-10 Score=80.05 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=61.9
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
.||+++|.+|+++. |-.+++.|+..+|.+-++..+..|+.+|...++|.||||++.+||-.||+
T Consensus 6 ~lp~~~v~~iaes~--Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESI--GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 69999999999999 77799999999999999999999999999999999999999999999985
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.88 E-value=4.2e-09 Score=85.79 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 48 NVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 48 ~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
+|.||+++... .++.||.+++.+|.+.+..|+..|+.++..+|+|+|||||+++||..++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 47788887732 3688999999999999999999999999999999999999999999999874 4556666666
Q ss_pred HHHH
Q 047516 127 REIE 130 (214)
Q Consensus 127 re~~ 130 (214)
.+..
T Consensus 98 ~~el 101 (140)
T 3vh5_A 98 SDEL 101 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.82 E-value=7.7e-09 Score=81.59 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=65.6
Q ss_pred HHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 48 NVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 48 ~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
+|.||+++... .++.||++++.+|.+.+..|+..|+.++..+|+|+|||||+++||..++++. +.|..+|.+|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 57899998832 2567999999999999999999999999999999999999999999999873 4566666666
Q ss_pred HHHH
Q 047516 127 REIE 130 (214)
Q Consensus 127 re~~ 130 (214)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.81 E-value=2e-08 Score=72.74 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=57.7
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 47 A~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..|.||+|+. |..+++.++...|.+.+..|+..|+.+|..+|.|+|||||+++||..|++.
T Consensus 5 ~~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3689999999 778999999999999999999999999999999999999999999999874
No 28
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.1e-08 Score=81.58 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcc
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDY 115 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dy 115 (214)
|||.++.+.+.+..++|+..|..+|..+|+|++||||+++||..||+..|-.-|
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 556666666666666677777778999999999999999999999999886544
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.4e-08 Score=77.20 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=57.8
Q ss_pred HHHHHHhhcCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 48 NVGRIMKKVIPGN-GKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 48 ~V~RImK~~LP~~-~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.|.+|+.+.++.. +.||.++..+|.+.+..|+..|+.++..+|+|+|||||+++||..++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5788999998754 8899999999999999999999999999999999999999999999875
No 30
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.78 E-value=1.6e-08 Score=78.94 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=63.4
Q ss_pred HHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 48 NVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 48 ~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
+|.||+++..- .+.++|+++..+|.+.+..|+..|+.+|..+|+|+|||||+.+||..|+++. +.|...|.+|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48889888731 2479999999999999999999999999999999999999999999999874 3445555555
Q ss_pred HHH
Q 047516 127 REI 129 (214)
Q Consensus 127 re~ 129 (214)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.7e-08 Score=88.17 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=56.8
Q ss_pred HHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 49 VGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 49 V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+.||+|.. +..|||.++.+.+.+..++|+..|+.+|..+|++++||||+++||..||+.+|
T Consensus 167 ~~RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 44778887 78899999999999999999999999999999999999999999999999765
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.57 E-value=2e-07 Score=74.13 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=63.9
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.- ...||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 19 ragL~fPV~ri~R~Lk~~~-~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 19 RAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHTCSSCHHHHHHHHHHTT-SCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 3678899999999999983 34599999999999999999999999999999999999999999999986
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=6.8e-08 Score=84.42 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=64.2
Q ss_pred cccCchhHHHHHHhhcCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 41 DRFLPIANVGRIMKKVIPG------NGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 41 Dl~LPkA~V~RImK~~LP~------~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
-+.||+.++.||+|+...+ +.|++.+|+.+||++++.|+.-|...+|.+|.|+||.||++.|+..|...-|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4689999999999998542 6899999999999999999999999999999999999999999999987655
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.54 E-value=2.4e-07 Score=73.34 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=63.9
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.- ...||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 18 ragLqfPV~ri~R~Lk~~~-~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGH-PKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHS-SSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCccCChHHHHHHHHcCc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4678899999999999982 25699999999999999999999999999999999999999999999986
No 35
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.53 E-value=2.8e-07 Score=73.85 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.- ...||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 21 ragLqfPV~rI~R~Lk~~~-~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGN-YAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTT-SSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCceeccHHHHHHHHHccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4678999999999999973 34599999999999999999999999999999999999999999999986
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.52 E-value=2.5e-07 Score=74.33 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=64.4
Q ss_pred ccccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 38 k~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
....+.||.+.|.|+||+.- ...||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~-~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 20 AKAGLTFPVGRVHRLLRRGN-YAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp GGGTCSSCHHHHHHHHHTTC-SCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCCeecCHHHHHHHHHccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 34678999999999999973 34599999999999999999999999999999999999999999999985
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.50 E-value=3.8e-07 Score=73.00 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=63.8
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.-....||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+.
T Consensus 23 ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4678899999999999983223599999999999999999999999999999999999999999999985
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.46 E-value=4.6e-07 Score=74.37 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=64.0
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.- ...||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 40 ragLqFPVgrI~R~LK~~~-~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGN-YSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTT-SCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCeeccHHHHHHHHHccc-cccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 4678899999999999983 34699999999999999999999999999999999999999999999986
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.30 E-value=1.7e-06 Score=72.88 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=63.7
Q ss_pred cccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.||.+.|.|+||+.-....||+.+|...|..+.+.++..|...|...|.+.||++|+++||..|++
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 3578999999999999982223599999999999999999999999999999999999999999999986
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.22 E-value=3.8e-06 Score=67.12 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=59.0
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 47 A~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
..|+|++|++-| +..||.+|...|...+..+..-|+.+|...|...+|+||+..||..|++.|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 578999999976 688999999999999999999999999999999999999999999999754
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.18 E-value=5e-06 Score=66.65 Aligned_cols=63 Identities=30% Similarity=0.396 Sum_probs=59.0
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 47 A~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...|...+|+||+..||..|++.|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 479999999976 688999999999999999999999999999999999999999999999754
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.93 E-value=5.7e-05 Score=55.68 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=62.1
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
-|++..+..|||+.= ++..+..|+.++|.+.|.+||..++..|...|+|-|-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~id-p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVD-PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 589999999999994 478999999999999999999999999999999999999999999999875
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.88 E-value=8.4e-05 Score=55.75 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=62.3
Q ss_pred cccCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 41 DRFLPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 41 Dl~LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+..+|...|.||++..+. +.+||++||..++.+....|+..-...|...++.++..+|..+|+-+.+-.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 447999999999998886 578999999999999999999999999999999899999999999887654
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.86 E-value=4.7e-05 Score=64.03 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=58.4
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 47 A~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.-|+|++|+.-| +..||.+|...|...+..+..-|+.+|...+...+|+||+..||..|++.
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 468999999977 68899999999999999999999999999999999999999999999974
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.81 E-value=0.00011 Score=54.68 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=62.3
Q ss_pred cccccCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 39 EQDRFLPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 39 ~~Dl~LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+.+-.+|...|.||++.... +.+||++||..++.+....||......|...++.++-..|..+|+-+.+-.
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 44568999999999999987 478999999999999999999999999999999899999999999887653
No 46
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0003 Score=55.91 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=60.9
Q ss_pred cCchhHHHHHHhhcCC---C---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccChHHHHHHHHHcCCC
Q 047516 43 FLPIANVGRIMKKVIP---G---NGKISKDAKETVQECVSEFISFVTGEASDKCQREKR---KTINGDDIIWAITTLGFE 113 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP---~---~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kR---KTI~~eDVl~ALe~LGF~ 113 (214)
.||+.++.||+|+... . +.|++.+|+.+||++++.|+..|...||-+|.|+-| |-|+.+ +...+.. -+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHH
Confidence 4789999999998632 2 689999999999999999999999999999998844 456542 3333311 012
Q ss_pred cchHHHHHHHHHHHHHHhhh
Q 047516 114 DYVAPLKLYLSKYREIEGEK 133 (214)
Q Consensus 114 dyi~~Lk~~L~~yre~~~~K 133 (214)
+|.+.+-...-.|-+-.++|
T Consensus 79 ~~l~~i~rdav~yaehA~RK 98 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKRK 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34444443344455554444
No 47
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.31 E-value=0.0011 Score=50.00 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=60.5
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccChHHHHHHHHHcC
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREK-RKTINGDDIIWAITTLG 111 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~k-RKTI~~eDVl~ALe~LG 111 (214)
.||++.|+|||...+ +..++.+...+|.-.+.+||-.|..+|.+++.+.+ +.-|.+.||..|.+.|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999996 67899999999999999999999999999998775 56999999999987653
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0078 Score=45.50 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=41.0
Q ss_pred cCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047516 43 FLPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQ 91 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~ 91 (214)
.||+..|.||++..+. +++||++||..++++....||..-...|++..+
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke 50 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHK 50 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999998875 478999999999999999999776666655443
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.17 E-value=0.37 Score=41.16 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=51.4
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVS----EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~----eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
++...+..|++..+. .+..++.++.+.|.+.+. ..+..+...|...|...++.+|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666777765543 256799999999988876 356667777888888899999999999999975
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=90.21 E-value=1.1 Score=45.54 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=58.5
Q ss_pred ccccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 40 QDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 40 ~Dl~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..+.+|.+.|.|++|... ..||+..|-..|.-..+.....|..-|...|...+++.|++.||..|+..
T Consensus 101 ~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 568899999999997664 46999999999888887777777778888899999999999999999863
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.27 E-value=4 Score=34.48 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred CchhHHHHHHhhcCCC---CcccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIPG---NGKISKDAKETVQECV------------SEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 44 LPkA~V~RImK~~LP~---~~rISkDA~ealqeca------------~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
|....+..+++..+.. ...++.++...+.+.+ --++..+...|...|...++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3445666666655422 3478999999998888 344667777888888888999999999999999
Q ss_pred HcCCCcchHHH
Q 047516 109 TLGFEDYVAPL 119 (214)
Q Consensus 109 ~LGF~dyi~~L 119 (214)
.+....+...+
T Consensus 273 ~~~~~~~~~~l 283 (389)
T 1fnn_A 273 EVLFGISEEVL 283 (389)
T ss_dssp HHSCCCCHHHH
T ss_pred HHhhhhHHHHH
Confidence 87665554443
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.03 E-value=3.3 Score=37.43 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=49.4
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECV-S---EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca-~---eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+....+..+++..+. .+..++.++...+.+.+ . .....|...|..+|...++.+|+.+||..|+..
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 455566666655432 24568999998888876 2 356667778888999999999999999999865
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.43 E-value=1.9 Score=36.26 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=52.0
Q ss_pred chhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 45 PIANVGRIMKKVIP---GNGKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 45 PkA~V~RImK~~LP---~~~rISkDA~ealqeca~------eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
....+..|++..+. ....++.++.+.+.+.+. ..+..+...|...|...++.+|+.+||..|++.+.
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 35666666665432 246789999999988886 46667777888889888999999999999998763
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=79.79 E-value=2.2 Score=29.44 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 68 KETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 68 ~ealqeca~eF----I~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
...|.+.++-| |..|..+|...|...++..|+.+|+..||+.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 45555555545 7788888999999999999999999999975
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.31 E-value=5.9 Score=33.07 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=51.7
Q ss_pred CchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 44 LPIANVGRIMKKVIP---GNGKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 44 LPkA~V~RImK~~LP---~~~rISkDA~ealqeca~------eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...|..+++.+|+.+||..|++.+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 445667777765332 245789999998888776 3455577788888888899999999999999876543
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.07 E-value=13 Score=31.02 Aligned_cols=50 Identities=10% Similarity=-0.070 Sum_probs=40.5
Q ss_pred CcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 60 NGKISKDAKETVQECVSE-------FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 60 ~~rISkDA~ealqeca~e-------FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.+.++.++.+.|.+.+.. -+..+...|...|...+|.+|+.+||..|+..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 458999999999887653 45566677778888899999999999999864
No 57
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=73.83 E-value=3.1 Score=34.70 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCCCCCccccc--cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 32 NNNHNSKEQDR--FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 32 ~~~~~~k~~Dl--~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+-++-.+.++. -+|.+-+.|++|.+ .+.-|.|+-..-+...++.=+..|.--|...|+.++|.+|..-|+=-
T Consensus 13 ~~~~~~~~~~Mm~vmg~~kferlFR~a--agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI---- 86 (171)
T 1r4v_A 13 QHKNYSKIETMLRPKGFDKLDHYFRTE--LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI---- 86 (171)
T ss_dssp --------CCTTSCTTHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC----
T ss_pred hhccHHHHHHHHhcCChHHHHHHHHHH--hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc----
Confidence 33444556666 78999999999999 57778899999999999999999999999999999999999887521
Q ss_pred cCCCcchHHHHHHHHHHHHH
Q 047516 110 LGFEDYVAPLKLYLSKYREI 129 (214)
Q Consensus 110 LGF~dyi~~Lk~~L~~yre~ 129 (214)
-..+++.+.+||+.
T Consensus 87 ------TKGlqEsi~~Fr~l 100 (171)
T 1r4v_A 87 ------TKALEEHIKNFQKI 100 (171)
T ss_dssp ------CHHHHHHHHHHHTC
T ss_pred ------cHHHHHHHHHHHhc
Confidence 23455556666654
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.55 E-value=14 Score=34.63 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=40.7
Q ss_pred cccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 61 GKISKDAKETVQECVS-------------EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 61 ~rISkDA~ealqeca~-------------eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..++.+|...|.+.+. .-+..|...|..+|..+++..|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999999988653 345667778889999999999999999999964
No 59
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=71.48 E-value=4.6 Score=28.20 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 80 SFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 80 ~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
..|..+|...|.+.++..|+.+|+..|++..
T Consensus 38 ~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 38 AAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3345566777778889999999999999875
No 60
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=71.35 E-value=5 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 69 ETVQECVSEF----ISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 69 ealqeca~eF----I~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+.|.+.+.-| |..|..+|...|.+.++..|+.+|+..||+.+-
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 4444444444 677777888888888999999999999998654
No 61
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=70.50 E-value=6.6 Score=32.02 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=52.9
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 103 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDV 103 (214)
-++.+-+.|++|.+ .+.-|.|+-..-+...++.=+..|.--|...|+.++|.+|...|+
T Consensus 2 vm~~~~~e~lFR~a--a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQA--AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHH--HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHH--hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36788999999999 567788888899999999999999999999999999999998875
No 62
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=69.93 E-value=5.3 Score=28.57 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 79 ISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 79 I~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
|..|..+|...|.+..+..|+.+|+..||+.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4556778888888888999999999999975
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=69.63 E-value=4.9 Score=27.88 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 79 ISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 79 I~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
|..|..+|...|...++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 556677788888888999999999999998753
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.31 E-value=24 Score=29.56 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=36.3
Q ss_pred CcccCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 60 NGKISKDAKETVQECVSEF-----------------------ISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 60 ~~rISkDA~ealqeca~eF-----------------------I~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
++.|+.++.+.+.+.+... +..|...|...|.-.+|..|+.+||..|+..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4568888888887655322 2334555666788889999999999999864
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.90 E-value=19 Score=30.87 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=47.9
Q ss_pred hhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCc
Q 047516 46 IANVGRIMKKVIP-GNGKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFED 114 (214)
Q Consensus 46 kA~V~RImK~~LP-~~~rISkDA~ealqeca~---eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~d 114 (214)
...+..|++.... -++.++.++...|.+.+. -.+..+...+.+.|...++..|+.++|..||+.++++.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 3455566654321 145688888888876542 34455566677778878888999999999999887653
No 66
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=65.79 E-value=5.5 Score=28.07 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccChHHHHHHHHHcC
Q 047516 59 GNGKISKDAKETVQECVSEFISFVTGEASD-KCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 59 ~~~rISkDA~ealqeca~eFI~~LtseAne-~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+++.++.||...|.+ +--|+.--+....+ +|...|...|+.+.|..|-..+|
T Consensus 2 ~~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 2 GELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 356789999999988 66788777776666 89999999999999999877654
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.19 E-value=11 Score=31.82 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=47.1
Q ss_pred CchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 44 LPIANVGRIMKKVIP---GNGKISKDAKETVQECVS------EFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 44 LPkA~V~RImK~~LP---~~~rISkDA~ealqeca~------eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
|....+..|++..+. ....++.++.+.+.+.+. ..+..+...|...|. ++.+|+.+||..|++.+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 455667777776432 245789999988888776 134455566666666 678999999999998864
No 68
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=64.04 E-value=46 Score=25.34 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 84 GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 84 seAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
..+......++.-+|+.+++..+|..+|+.-=...+...+.
T Consensus 96 ~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~ 136 (191)
T 1y1x_A 96 REGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMR 136 (191)
T ss_dssp HHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34556667778889999999999999987433344444443
No 69
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=61.98 E-value=40 Score=24.03 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYL 123 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L 123 (214)
+......++.-.|+.+++..+|..+|..--.+.++..+
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34445566777888888888888888654344444433
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=60.47 E-value=28 Score=26.73 Aligned_cols=62 Identities=3% Similarity=-0.062 Sum_probs=37.1
Q ss_pred hhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 46 IANVGRIMKKVIP-GNGKISKDAKETVQECVSE---FISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 46 kA~V~RImK~~LP-~~~rISkDA~ealqeca~e---FI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
...+.++++..+. .+..++.++.+.|.+.+.- -+..+...+...|..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3444555544332 2457889988888876542 22333334445554444 4699999998874
No 71
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=60.20 E-value=26 Score=26.08 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
+++..+..+|.. |...|...+...|.++|++.||=.-
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcC
Confidence 567777777654 6778899999999999999998543
No 72
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=58.86 E-value=6.9 Score=27.50 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=39.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccChHHHHHHHHHcC
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASD-KCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne-~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+.++.||...|.+ +--|+.--+....+ +|...|...|+.+.|..|-..+|
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 53 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHHh
Confidence 5688899888888 66777776666665 89999999999999998876543
No 73
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.68 E-value=17 Score=27.52 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
+++..+..+|.. |...|..-+-..|.++||+.||=.-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 467777776654 6778999999999999999998543
No 74
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=56.18 E-value=21 Score=26.70 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
+++..+..+|.. |...|...+-..|.++|++.||=.-
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 567777777754 6778888899999999999998543
No 75
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=56.04 E-value=18 Score=27.14 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=40.5
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
++...+.++++..+. .+..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 455566666665432 14568899888888776544444444444444433 6999999999875
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=55.25 E-value=19 Score=29.26 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 78 FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 78 FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
-|..|...|...|...++.+|+.+||..|++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 56678888888999999999999999999854
No 77
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=51.63 E-value=78 Score=24.16 Aligned_cols=25 Identities=12% Similarity=-0.102 Sum_probs=16.3
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.....++.-+|+.+++..+| .+|..
T Consensus 133 ~~~D~d~~G~Is~~El~~~l-~~g~~ 157 (196)
T 3dtp_E 133 NLFDEGDGKCKEETLKRSLT-TWGEK 157 (196)
T ss_dssp HTTCSSSSCCBHHHHHHHHH-HSSSC
T ss_pred HHHCCCCCCcCcHHHHHHHH-HcCCC
Confidence 33445566677777777777 77753
No 78
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=51.13 E-value=34 Score=25.80 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=30.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
-+++..++.+|.. |...|...+...|.++||+.||=.-
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 3578888877755 6677899999999999999998544
No 79
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=49.16 E-value=40 Score=26.04 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=41.5
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHH
Q 047516 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYL 123 (214)
Q Consensus 44 LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L 123 (214)
|....+.||-+-. ...++.+.++..|.+..+.--..-..++......++.-+|+.+++..+|..+|+.--...+...+
T Consensus 22 l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~ 99 (197)
T 3pm8_A 22 LSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVL 99 (197)
T ss_dssp CCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHH
T ss_pred CCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4555566654433 23345555544444332221111112344455567788999999999999998854444444444
Q ss_pred H
Q 047516 124 S 124 (214)
Q Consensus 124 ~ 124 (214)
.
T Consensus 100 ~ 100 (197)
T 3pm8_A 100 R 100 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=48.79 E-value=18 Score=26.89 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCccChHHHHHHH
Q 047516 84 GEASDKCQREKRKTINGDDIIWAI 107 (214)
Q Consensus 84 seAne~a~~~kRKTI~~eDVl~AL 107 (214)
..|...|...+...|..+|++.||
T Consensus 11 ~~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 11 NMAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp HHHHHHHHHHTBSEECHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHH
Confidence 346778888899999999999998
No 81
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=47.79 E-value=63 Score=21.96 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=47.5
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc---CCCcchHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL---GFEDYVAPL 119 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L---GF~dyi~~L 119 (214)
.++...|.+|++..=. +..|+-+-...+......- ..-...+......++.-.|+.+++..+|..+ |..--.+.+
T Consensus 5 ~~s~~ei~~~~~~~d~-~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~ 82 (109)
T 5pal_A 5 VLKADDINKAISAFKD-PGTFDYKRFFHLVGLKGKT-DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTET 82 (109)
T ss_dssp TSCHHHHHHHHHHTCS-TTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhCC-CCcCcHHHHHHHHhhccCc-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3667788888887732 5566643222111000000 0012345566677888899999999999998 665445555
Q ss_pred HHHHHHH
Q 047516 120 KLYLSKY 126 (214)
Q Consensus 120 k~~L~~y 126 (214)
+..+..+
T Consensus 83 ~~~~~~~ 89 (109)
T 5pal_A 83 KALLAAG 89 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5544433
No 82
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=46.93 E-value=96 Score=23.84 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHHc----CCCcchHHHHHHHHHH
Q 047516 84 GEASDKCQREKRKTINGDDIIWAITTL----GFEDYVAPLKLYLSKY 126 (214)
Q Consensus 84 seAne~a~~~kRKTI~~eDVl~ALe~L----GF~dyi~~Lk~~L~~y 126 (214)
.+|-.... ++.-+|+.+++..+|..+ |+.-=-+.++..+.+|
T Consensus 79 ~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~ 124 (174)
T 2i7a_A 79 QHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRY 124 (174)
T ss_dssp HHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Confidence 45677778 888899999999999999 8753344455544443
No 83
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=46.51 E-value=49 Score=23.83 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
.|......++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4556666777889999999999999885433344444444
No 84
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.37 E-value=38 Score=25.45 Aligned_cols=63 Identities=3% Similarity=0.031 Sum_probs=39.7
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAI 107 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~AL 107 (214)
|....+..+++..+. .+..++.++...|.+.+.--..++-......+ ..++++|+.+||..++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 445566666665442 24578899888888877654444444333333 3345689999998875
No 85
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=45.35 E-value=68 Score=26.13 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccChHHHHHHHHHcCCCcchHHHH
Q 047516 61 GKISKDAKETVQECVSE----FISFVTGEASDKCQREK------------RKTINGDDIIWAITTLGFEDYVAPLK 120 (214)
Q Consensus 61 ~rISkDA~ealqeca~e----FI~~LtseAne~a~~~k------------RKTI~~eDVl~ALe~LGF~dyi~~Lk 120 (214)
..++.++...|.+.+.- -|..|..+|...|.++. ...|+.+|+..|++.+.-.-..+.++
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 34778877777766544 33455556655555443 36899999999998876554444443
No 86
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=45.27 E-value=75 Score=22.08 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
+......++.-.|+.+++..+|..+|..-=.+.+...+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44555667788999999999999998654445555555544
No 87
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=45.26 E-value=65 Score=22.96 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
|......++.-.|+.+++..+|..+|..--...+...+.
T Consensus 90 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 128 (153)
T 2ovk_B 90 AFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp HHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444455667778999999999999886533444444443
No 88
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=45.24 E-value=36 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.8
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 60 NGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 60 ~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
...+|..+..+|.+ |...|...|...|+.+||+.||=.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 34577777777755 66678888999999999999985443
No 89
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=44.38 E-value=1.2e+02 Score=26.28 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=44.2
Q ss_pred hhHHHHHHhhcCCC-CcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccChHHHHHHHH
Q 047516 46 IANVGRIMKKVIPG-NGKISKDAKETVQECVSE----FISFVTGEASDKCQRE------------KRKTINGDDIIWAIT 108 (214)
Q Consensus 46 kA~V~RImK~~LP~-~~rISkDA~ealqeca~e----FI~~LtseAne~a~~~------------kRKTI~~eDVl~ALe 108 (214)
......|++..+.. +..++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..||+
T Consensus 284 ~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp HHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 34444555554432 456888888888776543 4556666666665554 456899999999998
Q ss_pred HcCCC
Q 047516 109 TLGFE 113 (214)
Q Consensus 109 ~LGF~ 113 (214)
...-.
T Consensus 364 ~~~~s 368 (389)
T 3vfd_A 364 KIKRS 368 (389)
T ss_dssp HCCCS
T ss_pred HcCCC
Confidence 76543
No 90
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.99 E-value=31 Score=27.74 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 78 FISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 78 FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
=|..+...|...|...++.+|+.+||..|++.+
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 455667778888888999999999999999864
No 91
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=43.36 E-value=1e+02 Score=23.03 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=33.0
Q ss_pred CcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 60 NGKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 60 ~~rISkDA~ealqeca~---eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
..++.+.++..|.+... +-+.. ..++......++.-+|+.+++..+|+.+|+.
T Consensus 16 ~~~l~~~~l~~~~~~l~~~~~~~~~-l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 16 HSNIRNIIINIMAHELSVINNHIKY-INELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 34455555555444332 11111 2334455667788899999999999999986
No 92
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=42.83 E-value=81 Score=23.63 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
..+|..+..+|.+ |...|...+...|+.+||+.||-.-
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 4578888777765 5667888899999999999998543
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.81 E-value=80 Score=26.64 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=49.8
Q ss_pred CchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 44 LPIANVGRIMKKVIP---GNGKISKDAKETVQECVS---------EFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 44 LPkA~V~RImK~~LP---~~~rISkDA~ealqeca~---------eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
|....+..|++..+. ....++.++...+.+.+. .++..+...|...|...++.+|+.+||..++..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 455667777654321 124588888888888777 36777778888888888999999999999987754
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.71 E-value=19 Score=33.11 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=32.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 68 KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 68 ~ealqeca~e----FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.+.|.+.+.- =|..|..+|.-.|.+.+|..|+.+|+..|+..
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 3445444433 37788888999999999999999999999864
No 95
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.05 E-value=27 Score=32.61 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=38.7
Q ss_pred HHHhhcCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 51 RIMKKVIPGNGKISKDA-KETVQECVS----EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 51 RImK~~LP~~~rISkDA-~ealqeca~----eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.|++-.+ ....++.|. .+.|.+.+. .=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 360 ~Il~~~l-~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 360 KILGIHT-SKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHH-TTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3444333 233444432 344544432 346778888999999999999999999999864
No 96
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.61 E-value=28 Score=32.16 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 78 FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 78 FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
=|..|..+|...|.+++|..|+.+|+..|++.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46778888888999999999999999999864
No 97
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=40.36 E-value=24 Score=24.43 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=19.4
Q ss_pred cChHHHHHHHHHcCCCcchHHHH
Q 047516 98 INGDDIIWAITTLGFEDYVAPLK 120 (214)
Q Consensus 98 I~~eDVl~ALe~LGF~dyi~~Lk 120 (214)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36899999999999999987554
No 98
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=40.00 E-value=70 Score=27.53 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=33.6
Q ss_pred cccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------------cCCCccChHHHHHHHHHcC
Q 047516 61 GKISKDAKETVQECVSE----FISFVTGEASDKCQR------------EKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 61 ~rISkDA~ealqeca~e----FI~~LtseAne~a~~------------~kRKTI~~eDVl~ALe~LG 111 (214)
..++.++.+.|.+.+.- -|..|..+|...+.+ ...+.|+.+|+..||+...
T Consensus 269 ~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 45778877777775543 455566666555544 3447899999999998654
No 99
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.92 E-value=29 Score=31.90 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 77 EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 77 eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.=|..|..+|...|.+++|..|+.+|+..||++
T Consensus 356 ADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 346778888999999999999999999999864
No 100
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=39.50 E-value=94 Score=21.62 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHH-cCCCcchHHHHHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITT-LGFEDYVAPLKLYLS 124 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~-LGF~dyi~~Lk~~L~ 124 (214)
.+......++.-.|+.+++..+|.. +|..-=...+...+.
T Consensus 92 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 132 (153)
T 3ox6_A 92 DAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIR 132 (153)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3455566677788999999988888 776533344444443
No 101
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.29 E-value=26 Score=32.90 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 69 ETVQECVS----EFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 69 ealqeca~----eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+.|.+.+. .=|..|..+|...|.+++|+.|+.+|+..|+++
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44444443 236778888988999999999999999999975
No 102
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=38.74 E-value=43 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=25.7
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEF 78 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eF 78 (214)
.+..++|.|++... +....|+.+.++.|.+++.++
T Consensus 11 GVS~sTVSrvLng~-~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGK-AKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTC-TTTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 57789999999865 112378888888887777654
No 103
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=38.08 E-value=67 Score=19.48 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=22.4
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHH
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~ 122 (214)
.....++.-.|+.+++..+|..+|..--...+...
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 42 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF 42 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34455666788888888888888765333344433
No 104
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.74 E-value=1e+02 Score=25.54 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=47.8
Q ss_pred chhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 45 PIANVGRIMKKVIP-GNGKISKDAKETVQECVSE---FISFVTGEASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 45 PkA~V~RImK~~LP-~~~rISkDA~ealqeca~e---FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
+...+..+++..+. .+..++.++...|.+.+.- .+..+...|...|...++.+|+.+||..++..+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 34445555554432 2466899999988885432 344455566677888888999999999999987764
No 105
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.81 E-value=29 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 77 EFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 77 eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
.-|..|..+|...|.+.+|..|+.+|+..||++.
T Consensus 389 ADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 389 AQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3467788889889999999999999999999753
No 106
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=36.62 E-value=29 Score=24.26 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=20.4
Q ss_pred ccChHHHHHHHHHcCCCcchHHHH
Q 047516 97 TINGDDIIWAITTLGFEDYVAPLK 120 (214)
Q Consensus 97 TI~~eDVl~ALe~LGF~dyi~~Lk 120 (214)
.=+++||..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 107
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=35.74 E-value=99 Score=29.51 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=40.3
Q ss_pred cCchhHHHHHHhhcC--CCCcccCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCccC
Q 047516 43 FLPIANVGRIMKKVI--PGNGKISKDAKETVQECVSEF---------------------ISFVTGEASDKCQREKRKTIN 99 (214)
Q Consensus 43 ~LPkA~V~RImK~~L--P~~~rISkDA~ealqeca~eF---------------------I~~LtseAne~a~~~kRKTI~ 99 (214)
.++...+.+.+..+= --...++.++.+.|.+....- +..|...|-..|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355566666554330 014568888877776653322 123444555677888888888
Q ss_pred hHHHHHHHHH
Q 047516 100 GDDIIWAITT 109 (214)
Q Consensus 100 ~eDVl~ALe~ 109 (214)
++||..|++-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 108
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.61 E-value=57 Score=29.60 Aligned_cols=67 Identities=6% Similarity=0.119 Sum_probs=44.5
Q ss_pred CchhHHHHHHhhcCC--------CCcccCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc--CCCccChHHHHHHHHHc
Q 047516 44 LPIANVGRIMKKVIP--------GNGKISKDAKETVQECVSEF---ISFVTGEASDKCQRE--KRKTINGDDIIWAITTL 110 (214)
Q Consensus 44 LPkA~V~RImK~~LP--------~~~rISkDA~ealqeca~eF---I~~LtseAne~a~~~--kRKTI~~eDVl~ALe~L 110 (214)
++...+..|++..+. ....|+.++.+.|.+.+.-- +..+...|...|... ++.+|+.+||..++...
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 566677777766643 24669999999998875322 223333444455423 66799999999999865
No 109
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=35.50 E-value=36 Score=27.14 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=27.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
+++..++.+|.. |...|...+-..|.+||++.||=.
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~ 59 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLD 59 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHH
Confidence 355666666544 677888889999999999999854
No 110
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.50 E-value=52 Score=27.02 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=46.2
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVS---EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~---eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
++...+..+++..+. .+..++.++...|.+.+. ..+..+...+...|...++..|+.+|+..++..++.+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 455556666665532 246799999988888752 2333444444445555677899999999999887653
No 111
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.39 E-value=87 Score=21.34 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
.....++.-.|+.+++..+|..+|+.-=...++..+.
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445677788999999999999887533344444333
No 112
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=34.84 E-value=1.2e+02 Score=21.65 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
+......++.-.|+.+++..+|..+|..--.+.+...+.
T Consensus 106 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 144 (169)
T 3qrx_A 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIA 144 (169)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445555677789999999999998885433444444433
No 113
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=34.82 E-value=15 Score=34.85 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 62 KISKDAKETVQECVSE------------------FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 62 rISkDA~ealqeca~e------------------FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
.++.+|.+.|.+.... -+..|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5666777776665322 13345566777888899999999999999854
No 114
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.65 E-value=48 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
|-.....++.-+|+.+++..+|+.+|+.-=...++..+.
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445567788889999999999999987533334444433
No 115
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=32.34 E-value=2e+02 Score=26.54 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
.+......++.-+|+.+++..+|+.+|+.-=.+.++..+..|
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 355556667777889999998888888754444555444443
No 116
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=32.18 E-value=2.7e+02 Score=25.76 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=38.6
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCccChHHHH
Q 047516 47 ANVGRIMKKVIPGNGKISKDAKETVQECVSE-------------FISFVTGEASDKCQREKRKTINGDDII 104 (214)
Q Consensus 47 A~V~RImK~~LP~~~rISkDA~ealqeca~e-------------FI~~LtseAne~a~~~kRKTI~~eDVl 104 (214)
..+.++.+.. ..+.++.++.+.+.+.+.. -+..+...|...|.-.+|..|+++||.
T Consensus 212 e~l~~~~~~~--~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 212 EEYERWQKEI--GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHH--TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhcC--CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 3344433333 3567888888888777642 223355566778889999999999999
No 117
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=31.59 E-value=1.3e+02 Score=20.86 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
+......++.-.|+.+++..+|..+|..-=...+...+.
T Consensus 84 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 122 (142)
T 2bl0_C 84 AFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLG 122 (142)
T ss_dssp HHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445566677888888888887775432333443333
No 118
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=31.50 E-value=1.2e+02 Score=20.44 Aligned_cols=36 Identities=8% Similarity=-0.071 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLK 120 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk 120 (214)
.+......++.-.|+.+++..+|..+|+.-=...+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~ 63 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQILTDEQFD 63 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 345566677888999999999999998753333333
No 119
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=30.35 E-value=1.3e+02 Score=20.34 Aligned_cols=80 Identities=9% Similarity=0.042 Sum_probs=45.8
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc---CCCcchHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL---GFEDYVAPL 119 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L---GF~dyi~~L 119 (214)
.+...-|.++++..= ++..|+-+-...+...... -..-...+......++.-.|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLSSK-TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTC-CHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcCCC-cHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 466778888888762 4566765422211100000 00112345556677788899999999999988 554434444
Q ss_pred HHHHH
Q 047516 120 KLYLS 124 (214)
Q Consensus 120 k~~L~ 124 (214)
+..+.
T Consensus 84 ~~~~~ 88 (109)
T 3fs7_A 84 KAFLA 88 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 120
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.89 E-value=75 Score=19.98 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=18.1
Q ss_pred HHHhcCCCccChHHHHHHHHHcCCC
Q 047516 89 KCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 89 ~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
....++.-.|+.+++..+|..+|+.
T Consensus 15 ~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 15 LFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 3445566678888888888888765
No 121
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=29.60 E-value=2.5e+02 Score=26.93 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=36.0
Q ss_pred HHHHHHHH-----HHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHHHH
Q 047516 76 SEFISFVT-----GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 76 ~eFI~~Lt-----seAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
.+|+..+. ..+......++.-+|+.+++..+|+.+|+.--...++..+..|
T Consensus 595 ~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~~~ 650 (714)
T 3bow_A 595 KEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARF 650 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45555543 3455566677888999999999999999765455666666555
No 122
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=29.57 E-value=23 Score=26.29 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred ccChHHHHHHHHHcCCCcchHHH
Q 047516 97 TINGDDIIWAITTLGFEDYVAPL 119 (214)
Q Consensus 97 TI~~eDVl~ALe~LGF~dyi~~L 119 (214)
.-+++||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 34789999999999999999765
No 123
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.57 E-value=1.2e+02 Score=19.94 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
.....++.-.|+.+++..+|..+|+.-=...+...+.
T Consensus 27 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 27 DMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445667778999999999999887543444444433
No 124
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.52 E-value=43 Score=26.81 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q 047516 50 GRIMKKVIPGNGKISKDA-KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDIIWAI 107 (214)
Q Consensus 50 ~RImK~~LP~~~rISkDA-~ealqeca~e----FI~~LtseAne~a~~~kRKTI~~eDVl~AL 107 (214)
.+|++..+ ....++.|+ ...|.+.+.- -|..+..+|...|...++.+|+.+|+..|+
T Consensus 192 ~~il~~~~-~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 192 EQILRIHA-RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHH-TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHH-cCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34454433 233454443 4455544432 244566677778888888999999999886
No 125
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=29.51 E-value=1.5e+02 Score=20.82 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=44.5
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHH------HHHHHHHHH------------HHHHHHHhcCCCccChHHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECV------SEFISFVTG------------EASDKCQREKRKTINGDDII 104 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca------~eFI~~Lts------------eAne~a~~~kRKTI~~eDVl 104 (214)
.|...-+.++++.. +..++.+....+-+.+ .+|+.++.. .|......++.-+|+.+++.
T Consensus 31 ~i~~~el~~~l~~~---g~~~~~~~~~~l~~~~d~~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~ 107 (146)
T 2qac_A 31 KISIDNASYNARKL---GLAPSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMK 107 (146)
T ss_dssp BEEHHHHHHHHHHT---TCCCCHHHHHHHHHHHCSEECHHHHHHHHHHTCCTTCCHHHHHHHHHTTCTTCSSEEEHHHHH
T ss_pred cccHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 45555666666654 2344443333332222 456655542 33344455666788999999
Q ss_pred HHHHHcCCCcchHHHHHHHHHH
Q 047516 105 WAITTLGFEDYVAPLKLYLSKY 126 (214)
Q Consensus 105 ~ALe~LGF~dyi~~Lk~~L~~y 126 (214)
.+|..+|..-=...+...+..+
T Consensus 108 ~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 108 NILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHc
Confidence 9988887543334455555444
No 126
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.47 E-value=1.2e+02 Score=22.72 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~ 122 (214)
+|-.....++.-+|+.+++..+|..+|..-=-+.+...
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l 126 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDI 126 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45666667777788888888888888865333344433
No 127
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.83 E-value=1.2e+02 Score=20.48 Aligned_cols=80 Identities=10% Similarity=0.139 Sum_probs=44.1
Q ss_pred cCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc---CCCcchHHH
Q 047516 43 FLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL---GFEDYVAPL 119 (214)
Q Consensus 43 ~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L---GF~dyi~~L 119 (214)
.+...-|.+|++.. .++..|+-+-...+......- ..-...+......++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~~t~~e~~~~~~~~-d~~g~i~~~ef~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (110)
T 1pva_A 6 LLKADDIKKALDAV-KAEGSFNHKKFFALVGLKAMS-ANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAET 83 (110)
T ss_dssp HSCHHHHHHHHHHT-CSTTCCCHHHHHHHHTCTTSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHhc-CCCCcCcHHHHHHHHccCcch-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHH
Confidence 35667778888775 245556643222211100000 0012345556667788899999999999998 443333444
Q ss_pred HHHHH
Q 047516 120 KLYLS 124 (214)
Q Consensus 120 k~~L~ 124 (214)
+..+.
T Consensus 84 ~~~~~ 88 (110)
T 1pva_A 84 KAFLK 88 (110)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 128
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=28.46 E-value=2.1e+02 Score=22.36 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=50.6
Q ss_pred ccCchhHHHHHHhhc-CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHH
Q 047516 42 RFLPIANVGRIMKKV-IPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLK 120 (214)
Q Consensus 42 l~LPkA~V~RImK~~-LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk 120 (214)
..++...+.++++.. ..++..|+-+-...+.... .-...+......++.-+|+.+++..+|..+|..-=.+.++
T Consensus 82 ~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~-----~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~ 156 (220)
T 3sjs_A 82 IRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM-----ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSL 156 (220)
T ss_dssp BCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-----HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHH
Confidence 346667777777766 2345667654322222211 1133456667778888999999999999999764445555
Q ss_pred HHHHHHH
Q 047516 121 LYLSKYR 127 (214)
Q Consensus 121 ~~L~~yr 127 (214)
..+..|-
T Consensus 157 ~l~~~~d 163 (220)
T 3sjs_A 157 LLHRLFA 163 (220)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 5555443
No 129
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=28.43 E-value=82 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCC
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGF 112 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF 112 (214)
.|......++.-.|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3555566777888999999999998886
No 130
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=28.30 E-value=1.4e+02 Score=20.13 Aligned_cols=82 Identities=15% Similarity=0.024 Sum_probs=46.9
Q ss_pred ccCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc---CCCcchHH
Q 047516 42 RFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL---GFEDYVAP 118 (214)
Q Consensus 42 l~LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L---GF~dyi~~ 118 (214)
+.+...-|.+|++..= ++..|+-+-...+......- ..-...+......++.-+|+.+++..+|..+ |..--...
T Consensus 5 ~~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~ 82 (109)
T 1bu3_A 5 GILADADVAAALKACE-AADSFNYKAFFAKVGLTAKS-ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAE 82 (109)
T ss_dssp CSSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHH
T ss_pred ccCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhh-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHH
Confidence 3466778888888763 45667754222211100000 0112345556667788899999999999998 54433444
Q ss_pred HHHHHHH
Q 047516 119 LKLYLSK 125 (214)
Q Consensus 119 Lk~~L~~ 125 (214)
++..+..
T Consensus 83 ~~~~~~~ 89 (109)
T 1bu3_A 83 TKAFLKA 89 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 131
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=28.10 E-value=1e+02 Score=25.96 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=36.2
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe 108 (214)
++...+.+.+++.+- .+..|+.+|..+|.+.+.-=+..+..+--..+.-.+.++|+.+||...+-
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 455555555544432 36789999999998876532222222222223222345788888765443
No 132
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=28.09 E-value=1.3e+02 Score=19.68 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=13.7
Q ss_pred HhcCCCccChHHHHHHHHHcCCC
Q 047516 91 QREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 91 ~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
..++.-.|+.+++..+|..+|..
T Consensus 19 D~d~~G~i~~~el~~~l~~~g~~ 41 (92)
T 2kn2_A 19 DKDQNGYISASELRHVMINLGEK 41 (92)
T ss_dssp CTTCSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCCeEcHHHHHHHHHHhCCC
Confidence 34455566666666666666643
No 133
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=27.86 E-value=1.5e+02 Score=20.46 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=16.9
Q ss_pred HHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 87 SDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 87 ne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
......++.-+|+.+++..+|..+|..
T Consensus 91 F~~~D~d~~G~i~~~el~~~l~~~g~~ 117 (149)
T 2mys_C 91 LRVFDKEGNGTVMGAELRHVLATLGEK 117 (149)
T ss_pred HHHhCCCCCceEcHHHHHHHHHHhCCC
Confidence 334445556677777777777776643
No 134
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=27.76 E-value=83 Score=20.26 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
.....++.-.|+.+++..+|..+|+.-=...+...+.
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445667778999999999998887543444444433
No 135
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=27.69 E-value=90 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=29.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccChHHHHHHHH
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASDKCQ-REKRKTINGDDIIWAIT 108 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne~a~-~~kRKTI~~eDVl~ALe 108 (214)
..+|.++..+|.+ |...|. .-|...|..+||+.||=
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl 133 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAAL 133 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHH
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHH
Confidence 4578888877765 677788 88999999999999984
No 136
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=27.66 E-value=2.9e+02 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.4
Q ss_pred CccChHHHHHHHHHcCCC
Q 047516 96 KTINGDDIIWAITTLGFE 113 (214)
Q Consensus 96 KTI~~eDVl~ALe~LGF~ 113 (214)
..|+.+|+..||+..-=.
T Consensus 317 ~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 317 PDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp CCBCHHHHHHHHHHSCCS
T ss_pred CCccHHHHHHHHHHcCCC
Confidence 469999999999986543
No 137
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=27.25 E-value=5.2 Score=22.81 Aligned_cols=8 Identities=63% Similarity=1.232 Sum_probs=6.8
Q ss_pred cccccCCC
Q 047516 207 QIDSVGNW 214 (214)
Q Consensus 207 ~~~~~~~~ 214 (214)
|||||-+|
T Consensus 6 qvDSV~rW 13 (22)
T 3ro3_B 6 QVDSVQRW 13 (26)
T ss_pred hhHHHHHH
Confidence 78999887
No 138
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=26.96 E-value=45 Score=24.07 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.3
Q ss_pred ccChHHHHHHHHHc-CCCcchHHHH
Q 047516 97 TINGDDIIWAITTL-GFEDYVAPLK 120 (214)
Q Consensus 97 TI~~eDVl~ALe~L-GF~dyi~~Lk 120 (214)
.=+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9999987654
No 139
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.86 E-value=51 Score=26.97 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHhhcCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q 047516 50 GRIMKKVIPGNGKISKDA-KETVQECVSE----FISFVTGEASDKCQREKRKTINGDDIIWAI 107 (214)
Q Consensus 50 ~RImK~~LP~~~rISkDA-~ealqeca~e----FI~~LtseAne~a~~~kRKTI~~eDVl~AL 107 (214)
.+|++..+. ...++.++ ...|.+.+.- -|..+..+|...|...++.+|+.+||..|+
T Consensus 216 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 216 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 345554332 33455444 4444444332 244556677778888888999999999886
No 140
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=26.82 E-value=1.4e+02 Score=23.08 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.0
Q ss_pred ccChHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhh
Q 047516 97 TINGDDIIWAITTLGFEDYVAPLKLYLSKYREIEGE 132 (214)
Q Consensus 97 TI~~eDVl~ALe~LGF~dyi~~Lk~~L~~yre~~~~ 132 (214)
.+.++-|-...+.+|++ .+.|+..+++|-+....
T Consensus 92 ~~kadTleeLA~~~gid--~~~L~~TV~~yN~~~~~ 125 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIV--VDELVQTVKNYQGYVQD 125 (160)
T ss_dssp SEECSSHHHHHHHHTCC--HHHHHHHHHHHHHHHTT
T ss_pred eEecCCHHHHHHHhCCC--HHHHHHHHHHHHHHHHc
Confidence 45555566566678886 57888888899887554
No 141
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=26.71 E-value=1.5e+02 Score=19.94 Aligned_cols=80 Identities=14% Similarity=0.022 Sum_probs=46.8
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc---CCCcchHHHH
Q 047516 44 LPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL---GFEDYVAPLK 120 (214)
Q Consensus 44 LPkA~V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L---GF~dyi~~Lk 120 (214)
++..-|.+|++..= ++..|+-+-...+...... -..-...+......++.-+|+.+++..+|..+ |..--...+.
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASK-SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGS-CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChh-HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 56677888888762 4566776433222111000 01112345566677788899999999999998 5543334444
Q ss_pred HHHHH
Q 047516 121 LYLSK 125 (214)
Q Consensus 121 ~~L~~ 125 (214)
..+..
T Consensus 84 ~~~~~ 88 (108)
T 2pvb_A 84 AFLAD 88 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 142
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=26.29 E-value=4e+02 Score=24.83 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHH
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~ 122 (214)
|......++.-.|+.+++..+|..+|..---+.++..
T Consensus 380 AFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeL 416 (440)
T 3u0k_A 380 AFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 416 (440)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4445556666778888888888877754333334433
No 143
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=26.14 E-value=1.8e+02 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.+......++.-.|+.+++..+|..+|+.
T Consensus 103 ~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 131 (166)
T 2aao_A 103 AAFTYFDKDGSGYITPDELQQACEEFGVE 131 (166)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHTCC----
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 34445556667778888888888777654
No 144
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=25.95 E-value=97 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=19.2
Q ss_pred HHHhcCCCccChHHHHHHHHHcCCC
Q 047516 89 KCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 89 ~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
....++.-+|+.+++..+|..+|+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3345666789999999999888864
No 145
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=25.91 E-value=1.8e+02 Score=22.66 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=35.7
Q ss_pred ccCchhHHHHHHhhc-CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHc
Q 047516 42 RFLPIANVGRIMKKV-IPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTL 110 (214)
Q Consensus 42 l~LPkA~V~RImK~~-LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~L 110 (214)
..+--+++.+++|++ |=++.+|+.--.+++ | ... ..+.++|+.++.+.||+.+
T Consensus 40 ~~M~~k~f~K~~kD~~lidgk~iT~TdvDIi------F---------~Kv-~k~~r~I~f~qF~~aL~~l 93 (125)
T 1pul_A 40 TEMTGKNFDKWLKDAGVLDNKAITGTMTGIA------F---------SKV-TGPKKKATFDETKKVLAFV 93 (125)
T ss_dssp SCCCHHHHHHHHHHHTSCCSSSSCHHHHHHH------H---------HHH-TCSSSCCCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHCCCCCCCCCCcccccee------e---------hcc-cCCcceecHHHHHHHHHHH
Confidence 368889999999998 223456776555543 2 122 3445779999999998654
No 146
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Probab=25.88 E-value=2e+02 Score=27.51 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCCCCCCccccccCchhHHHHHHhhcCCCCcc-cCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhcC---
Q 047516 31 NNNNHNSKEQDRFLPIANVGRIMKKVIPGNGK-ISKDAKETVQECVSEFISFVTG------------EASDKCQREK--- 94 (214)
Q Consensus 31 ~~~~~~~k~~Dl~LPkA~V~RImK~~LP~~~r-ISkDA~ealqeca~eFI~~Lts------------eAne~a~~~k--- 94 (214)
.+++.+...+|+. ---.+.|=++-. ++.+ |+.|-+.++.+-|..-|.-|.. +|..+|...+
T Consensus 373 mFagSN~daeD~D-Dy~vlQRDl~vd--gGl~pV~ee~vi~vRnkAarAiQavF~~LGlp~itDeeVEAatyA~gS~Dmp 449 (554)
T 1eex_A 373 MFAGSNEDAEDFD-DYNVIQRDLKVD--GGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMP 449 (554)
T ss_dssp TTSCCSSCGGGHH-HHHHHHHHHTCC--CSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHCSSGGGSC
T ss_pred cccCCCCChhhhh-HHHHHHHHhccC--CCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCccCC
Confidence 4566666666542 111233333322 4444 8888888888777777777766 4666665544
Q ss_pred ---------------CCccChHHHHHHHHHcCCCcchHHHHHHH
Q 047516 95 ---------------RKTINGDDIIWAITTLGFEDYVAPLKLYL 123 (214)
Q Consensus 95 ---------------RKTI~~eDVl~ALe~LGF~dyi~~Lk~~L 123 (214)
.+-|++-||++||.+-||.+-.+.+-..+
T Consensus 450 ~r~~~~dlkaa~~~~~rgiTg~DiVkaL~~~Gf~dvAe~il~~~ 493 (554)
T 1eex_A 450 ERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQ 493 (554)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCchhHHHHHHHHcCCHHHHHHHHHHH
Confidence 35699999999999999998776655433
No 147
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=25.50 E-value=1.9e+02 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHHcCCCc
Q 047516 84 GEASDKCQREKRKTINGDDIIWAITTLGFED 114 (214)
Q Consensus 84 seAne~a~~~kRKTI~~eDVl~ALe~LGF~d 114 (214)
..+......++.-.|+.+++..+|..+|+.+
T Consensus 85 ~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~ 115 (188)
T 1s6i_A 85 VSAFSYFDKDGSGYITLDEIQQACKDFGLDD 115 (188)
T ss_dssp HHHHHHTTTTCSSEEEHHHHHHTTTTTTCCT
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 3456666777888999999999999888653
No 148
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=25.40 E-value=1.4e+02 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=17.4
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.....++.-.|+.+++..+|..+|..
T Consensus 90 ~~~D~d~~G~I~~~el~~~l~~~g~~ 115 (148)
T 1m45_A 90 QVFDKESTGKVSVGDLRYMLTGLGEK 115 (148)
T ss_dssp HTTCSSSSSEEEHHHHHHHHHHSTTC
T ss_pred HHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 33444566678888888888777754
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=25.31 E-value=90 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.5
Q ss_pred CccChHHHHHHHHHcCCC
Q 047516 96 KTINGDDIIWAITTLGFE 113 (214)
Q Consensus 96 KTI~~eDVl~ALe~LGF~ 113 (214)
..|+.+|+..||+...=.
T Consensus 284 ~~it~~df~~al~~~~ps 301 (322)
T 3eie_A 284 PDLTIKDFLKAIKSTRPT 301 (322)
T ss_dssp CCCCHHHHHHHHHHSCCS
T ss_pred CCCCHHHHHHHHHhcCCC
Confidence 459999999999976643
No 150
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=24.76 E-value=87 Score=20.24 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 89 ~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
....++.-.|+.+++..+|..+|..-=...+...+.
T Consensus 31 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 66 (87)
T 1s6j_A 31 MIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMD 66 (87)
T ss_dssp HHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445667788999999999999887544444444433
No 151
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.70 E-value=2.1e+02 Score=21.13 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 58 PGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 58 P~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
|...++|.+-+..|.++ -.....++--+|+.+++..+|+.||+.--...+...+.
T Consensus 5 ~~~~~Lt~~qi~elk~~------------F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~ 59 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEA------------FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp --CTTCCHHHHHHHHHH------------HHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHH------------HHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 55667888766655443 33445677789999999999999999766666665543
No 152
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=24.61 E-value=85 Score=23.03 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=28.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..+|..+..+|.+ |...|...+...|..+||+.||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3467766666544 667788889999999999999844
No 153
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.56 E-value=22 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 78 FISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 78 FI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
-|..|..+|...|...++.+|+.+||..|+++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45566667777777778889999999888754
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.43 E-value=56 Score=27.02 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=40.0
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccChHHHHHHHHHc
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVS----EFISFVTGEASDKCQREKR-KTINGDDIIWAITTL 110 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~----eFI~~LtseAne~a~~~kR-KTI~~eDVl~ALe~L 110 (214)
++...+..+++..+. .++.++.++...|.+.+. ..+..|-. +...+...++ +.|+.+||..++..+
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~-~~~~~~~~~~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS-ASKGAQYLGDGKNITSTQVEELAGVV 263 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH-THHHHHHHCSCCCCCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH-HHHhcCCCccCccccHHHHHHHhCCC
Confidence 445555566555432 356799999998888753 33333322 3333443333 389999999888744
No 155
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=24.15 E-value=2e+02 Score=20.53 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=11.9
Q ss_pred hcCCCccChHHHHHHHHHcCCC
Q 047516 92 REKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 92 ~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.++.-+|+.+++..+|..+|+.
T Consensus 39 ~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 39 TDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp TTCCSEECHHHHHHHHHHTSCC
T ss_pred CCCCCcCcHHHHHHHHHHcCCC
Confidence 3444455555665555555554
No 156
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.08 E-value=1.2e+02 Score=20.28 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHHHhcCCCccChHHHHHHHHHcCC
Q 047516 88 DKCQREKRKTINGDDIIWAITTLGF 112 (214)
Q Consensus 88 e~a~~~kRKTI~~eDVl~ALe~LGF 112 (214)
.....++.-.|+.+++..+|..+|+
T Consensus 34 ~~~D~d~~G~I~~~El~~~l~~~g~ 58 (91)
T 2pmy_A 34 AACDANRSGRLEREEFRALCTELRV 58 (91)
T ss_dssp HHHCTTCSSSEEHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCcHHHHHHHHHHcCc
Confidence 3445666778888888888888874
No 157
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=24.05 E-value=1.6e+02 Score=20.42 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=23.9
Q ss_pred HHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 87 SDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 87 ne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
......++.-.|+.+++..+|..+|..--...+...+.
T Consensus 82 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 119 (143)
T 3j04_B 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYR 119 (143)
T ss_dssp HTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444566778888888888888876533344444333
No 158
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=23.90 E-value=1.9e+02 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHHHH
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLS 124 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~L~ 124 (214)
.|......++.-.|+.+++..+|..+|..-=...+...+.
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 126 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIR 126 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3555666777888999999999998886433334444443
No 159
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=23.83 E-value=4.6e+02 Score=24.71 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=20.3
Q ss_pred HHhcCCCccChHHHHHHHHHcCCC
Q 047516 90 CQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 90 a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
++..++++|.+++++..-+..||+
T Consensus 371 ~~~~~~~~l~G~~af~LyDTyGfP 394 (465)
T 1yfs_A 371 ALEEGRKTLSGKEVFTAYDTYGFP 394 (465)
T ss_dssp HHHTTCCEECHHHHHHHHHTSCCC
T ss_pred HHhcCCCcCCHHHHHhhhhccCCC
Confidence 344467789999999999999997
No 160
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=23.74 E-value=99 Score=22.86 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=27.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 61 GKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 61 ~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
..+|..+..+|. .|...|...+...|..+|++.||=.
T Consensus 78 ~~~s~~~~~vL~------------~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIE------------LSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHHh
Confidence 345666555554 4666777788999999999999854
No 161
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=23.49 E-value=2.1e+02 Score=20.69 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=44.2
Q ss_pred CchhHHHHHHhhc-CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcCCCcchHHHHHH
Q 047516 44 LPIANVGRIMKKV-IPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122 (214)
Q Consensus 44 LPkA~V~RImK~~-LP~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~ 122 (214)
++...+.++++.. ..++..|+-+-...+.... .-...+......++.-.|+.+++..+|..+|..--...+...
T Consensus 41 ~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-----~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 115 (172)
T 2znd_A 41 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-----TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL 115 (172)
T ss_dssp CCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-----HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-----HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555666666654 2234566643222211111 112345556667788899999999999999875444445544
Q ss_pred HHH
Q 047516 123 LSK 125 (214)
Q Consensus 123 L~~ 125 (214)
+..
T Consensus 116 ~~~ 118 (172)
T 2znd_A 116 IRK 118 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 162
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=23.35 E-value=54 Score=25.04 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
+......++.-+|+.+++..+|+.+|+.
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 3445556778899999999999999875
No 163
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=23.14 E-value=1.9e+02 Score=20.51 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=22.1
Q ss_pred HHHhcCCCccChHHHHHHHHHcCCCcchHHHHHH
Q 047516 89 KCQREKRKTINGDDIIWAITTLGFEDYVAPLKLY 122 (214)
Q Consensus 89 ~a~~~kRKTI~~eDVl~ALe~LGF~dyi~~Lk~~ 122 (214)
....++.-+|+.+++..+|..+|+.--...+...
T Consensus 35 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~ 68 (166)
T 2aao_A 35 MIDADKSGQITFEELKAGLKRVGANLKESEILDL 68 (166)
T ss_dssp HHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHH
T ss_pred HhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445667788888888888888765333334333
No 164
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=23.06 E-value=1.9e+02 Score=19.95 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=11.4
Q ss_pred cCCCccChHHHHHHHHHcCCC
Q 047516 93 EKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 93 ~kRKTI~~eDVl~ALe~LGF~ 113 (214)
++.-+|+.+++..+|..+|+.
T Consensus 23 d~~G~i~~~el~~~l~~~~~~ 43 (153)
T 3ox6_A 23 DKDGYINCRDLGNCMRTMGYM 43 (153)
T ss_dssp HCSSSCCHHHHHHHHHHTTCC
T ss_pred CCCCcCcHHHHHHHHHHcCCC
Confidence 344455555555555555553
No 165
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=22.97 E-value=1.3e+02 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=14.2
Q ss_pred HhcCCCccChHHHHHHHHHcCCCc
Q 047516 91 QREKRKTINGDDIIWAITTLGFED 114 (214)
Q Consensus 91 ~~~kRKTI~~eDVl~ALe~LGF~d 114 (214)
..++.-+|+.+++..+|+.+|+.-
T Consensus 20 D~d~~G~i~~~el~~~l~~~g~~~ 43 (148)
T 1exr_A 20 DKDGDGTITTKELGTVMRSLGQNP 43 (148)
T ss_dssp CTTCSSEECHHHHHHHHHHHTCCC
T ss_pred CCCCCCcCcHHHHHHHHHHcCCCC
Confidence 344555666666666666666543
No 166
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=22.63 E-value=95 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHH
Q 047516 84 GEASDKCQREKRKTINGDDIIWAIT 108 (214)
Q Consensus 84 seAne~a~~~kRKTI~~eDVl~ALe 108 (214)
..|...+...+...|+.+||+.||=
T Consensus 92 ~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 92 NLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHH
Confidence 4466677777889999999999985
No 167
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=22.33 E-value=1.5e+02 Score=26.61 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHcC
Q 047516 62 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 62 rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
+++..+..+|.. |...|..-+-..|..+|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 577777777755 66778999999999999999986543
No 168
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=22.20 E-value=2.1e+02 Score=20.12 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHcCC
Q 047516 86 ASDKCQREKRKTINGDDIIWAITTLGF 112 (214)
Q Consensus 86 Ane~a~~~kRKTI~~eDVl~ALe~LGF 112 (214)
+......++.-.|+.+++..+|..+|.
T Consensus 96 ~F~~~D~d~~G~I~~~el~~~l~~~g~ 122 (158)
T 2jnf_A 96 AFRLYDKEGNGYISTDVMREILAELDE 122 (158)
T ss_dssp HHHHHCSSSSSSEEHHHHHHHHHHHCT
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHhCC
Confidence 334444455556666776666666664
No 169
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.10 E-value=1.3e+02 Score=19.37 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHHhcCCCccChHHHHHHHHHcC
Q 047516 89 KCQREKRKTINGDDIIWAITTLG 111 (214)
Q Consensus 89 ~a~~~kRKTI~~eDVl~ALe~LG 111 (214)
....++.-.|+.+++..+|..+|
T Consensus 19 ~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 19 RFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHCTTCSSEEEHHHHHHHHHTTT
T ss_pred HHCCCCCCCcCHHHHHHHHHHcC
Confidence 34455666777777777777776
No 170
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=21.94 E-value=1.7e+02 Score=18.83 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047516 49 VGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASD 88 (214)
Q Consensus 49 V~RImK~~LP~~~rISkDA~ealqeca~eFI~~LtseAne 88 (214)
|+.+|=.- .+...-..|...+|-+.+.+||..+..+|.+
T Consensus 6 i~~mMy~f-GD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGF-GDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHT-TSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455444 3344578899999999999999999998865
No 171
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=21.21 E-value=1.8e+02 Score=20.06 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=10.4
Q ss_pred CCCccChHHHHHHHHHcCCC
Q 047516 94 KRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 94 kRKTI~~eDVl~ALe~LGF~ 113 (214)
+--+|+.+++..+|..+|+.
T Consensus 21 ~~G~i~~~el~~~l~~~~~~ 40 (149)
T 2mys_C 21 GDAKITASQVGDIARALGQN 40 (149)
T ss_pred CCCcCcHHHHHHHHHHhCCC
Confidence 44455555555555555544
No 172
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=21.03 E-value=1.2e+02 Score=24.39 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=30.8
Q ss_pred cccCHHHHHHHHHHHHHH-----------HHHHHHHHH-----HHHHhcCCC-ccChHHHHHHHHHcC
Q 047516 61 GKISKDAKETVQECVSEF-----------ISFVTGEAS-----DKCQREKRK-TINGDDIIWAITTLG 111 (214)
Q Consensus 61 ~rISkDA~ealqeca~eF-----------I~~LtseAn-----e~a~~~kRK-TI~~eDVl~ALe~LG 111 (214)
..++.++.+.|.+.+... +..+...+. +.+..+++. +|+.+||..|++.+.
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 469999999998876321 112222221 222233333 699999999998654
No 173
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=20.69 E-value=1.3e+02 Score=18.93 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=7.1
Q ss_pred CCccChHHHHHHHHHcC
Q 047516 95 RKTINGDDIIWAITTLG 111 (214)
Q Consensus 95 RKTI~~eDVl~ALe~LG 111 (214)
.-.|+.+++..+|..+|
T Consensus 17 ~G~i~~~el~~~l~~~g 33 (78)
T 1k9u_A 17 DGKISLSELTDALRTLG 33 (78)
T ss_dssp SSEECHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhC
Confidence 33444444444444443
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.55 E-value=1.3e+02 Score=24.91 Aligned_cols=65 Identities=5% Similarity=0.039 Sum_probs=37.7
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 047516 44 LPIANVGRIMKKVIP-GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITT 109 (214)
Q Consensus 44 LPkA~V~RImK~~LP-~~~rISkDA~ealqeca~eFI~~LtseAne~a~~~kRKTI~~eDVl~ALe~ 109 (214)
++...+..+++..+. .+..++.++...|.+.+.--+..+.......+. .+..+|+.+||..++..
T Consensus 178 l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGT 243 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCC
Confidence 455666666665432 246789999888887654433333332222222 22467999888777643
No 175
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=20.41 E-value=1e+02 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHcCCC
Q 047516 85 EASDKCQREKRKTINGDDIIWAITTLGFE 113 (214)
Q Consensus 85 eAne~a~~~kRKTI~~eDVl~ALe~LGF~ 113 (214)
.+......++.-.|+.+++..+|..+|..
T Consensus 80 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 108 (145)
T 2bl0_B 80 DAFRALDKEGNGTIQEAELRQLLLNLGDA 108 (145)
T ss_dssp HHHHHHCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHcCCC
Confidence 34445556667788888888888888754
Done!