BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047518
         (256 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 177/304 (58%), Gaps = 63/304 (20%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           I  +EA  +F++++ M P+PP +SSFN +LG +AK K Y  V+SL+KR++  GL PD  T
Sbjct: 71  IKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFIT 129

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSC-------------------------------- 101
            +ILINC+C + +V  G  VLG +LR                                  
Sbjct: 130 LNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMV 189

Query: 102 ---FTPDVVTFTSLIK---------------------------VCKPDAITYNTIIDGLC 131
              + P+VVT+ +L+                              KP+ + Y TIID LC
Sbjct: 190 RMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLC 249

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +DK KELFL+MK + + P+VV Y+S+I G C+   W  AK LF EM+D+GV PNVV
Sbjct: 250 KDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVV 309

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFNV++D LCK GKM+EA+ LL LMIQ G  PD FTYNTL+DGFCL GR++ A++LFVSM
Sbjct: 310 TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM 369

Query: 252 ESMG 255
           ES G
Sbjct: 370 ESKG 373



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +  ++  L K+   D    LF  +   G+ PD+  +S +I+  C  GR      +
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++     P+VVTF  LI  +CK                    PD  TYNT+IDG C 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A++LF+ M+ K ++ + V+Y  +I G+C +    EAK+L+ EMM + + P V+T
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVIT 415

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  L + GK+ +A +L   M  H + P++ TYN LLDG C    ++ A ELF  +E
Sbjct: 416 YNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLE 475

Query: 253 S 253
           +
Sbjct: 476 N 476



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN+++  L K    +    L K +   G  PD +T++ LI+ FC  GR+     +
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------VCK---PDAITYNTIIDGLCK 132
              +       D V++  LI                   +CK   P  ITYNT++ GL +
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V  A  LF +MK  ++ P   TY  ++ G C  N  +EA  LF  + +   QP++  
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQI 485

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D LCK  K++ A  L + +   G+ P+  TY  ++ G C +G++ +AK+LF+ ME
Sbjct: 486 FNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGME 545

Query: 253 SMGC 256
             GC
Sbjct: 546 EKGC 549



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +   M++   SP   + +N ++         D    LF  + S G+  D  ++++L
Sbjct: 326 EANHLLKLMIQRGESPDTFT-YNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KV--C 116
           IN +CK GR+     +   ++     P V+T+ +L+                   KV   
Sbjct: 385 INGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDL 444

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P++ TYN ++DGLCK   + +A ELF  +++ + +P++  +  +I G C A     A+ 
Sbjct: 445 TPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARE 504

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G++PNV+T+ V++  LCK+G+++ A  L   M + G  P+  T+NTL+ GFC
Sbjct: 505 LFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564

Query: 237 LTGRVNHAKELFVSM 251
               +    EL   M
Sbjct: 565 QNDEMQKVVELLQEM 579



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L +        +LF  +    L P+  T++IL++  CK   +S    +
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +    F P +  F              N +IDGLCK   ++ A+ELF ++  + ++P
Sbjct: 471 FHYLENHDFQPSIQIF--------------NCLIDGLCKARKIEIARELFNRLSHEGLEP 516

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV+TYT +I G C +     AK LF+ M ++G  PN+VTFN +M   C+N +M +   LL
Sbjct: 517 NVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELL 576

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
             M +    PDA T + ++D
Sbjct: 577 QEMAEKDFSPDASTISIVVD 596



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++H   P   ++NI+L  L KN H    + LF  L +    P +   + LI+  CK  +
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARK 498

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +  R+      P+V              ITY  +I GLCK G ++ AK+LFL M
Sbjct: 499 IEIARELFNRLSHEGLEPNV--------------ITYTVMIHGLCKSGQLENAKDLFLGM 544

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           ++K   PN+VT+ +++RGFC  ++  +   L  EM ++   P+  T ++++D L K+ K 
Sbjct: 545 EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKY 604

Query: 207 DEASSLLDLMIQHG 220
            E   LL      G
Sbjct: 605 REYLHLLPTFPAQG 618



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 15/169 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F Y L  H   P +  FN ++  L K +  +    LF RL+  GL P++ T+++
Sbjct: 465 SEAMELFHY-LENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTV 523

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  CK G++ +         +  F           K C P+ +T+NT++ G C+   +
Sbjct: 524 MIHGLCKSGQLENA--------KDLF------LGMEEKGCAPNLVTFNTLMRGFCQNDEM 569

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
            K  EL  +M +K+  P+  T + V+        + E   L      QG
Sbjct: 570 QKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQG 618


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 181/315 (57%), Gaps = 66/315 (20%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
           L++   G+IT I   +A   FD M+R HP PP +SSFN +LG LAK  HY  + SL+  +
Sbjct: 62  LRNCKTGNITAI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEM 117

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------- 114
              GL PDL+T SIL NC C + RVS     +  ILR  + P+VVT+T+LIK        
Sbjct: 118 RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRI 177

Query: 115 -------------VCKPDAITYNT------------------------------------ 125
                         C P+A+TY T                                    
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGV 237

Query: 126 -----IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
                IIDGLCK G  D+AKELF +MK + + P+V++Y+++I GFC A  W+++K LF E
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+DQGVQP++VTF+V++D LCK GK+ EA  LL++MIQ G+ P+  TYN+L+DGFC+ G 
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 241 VNHAKELFVSMESMG 255
           +N A+ELF+SM S G
Sbjct: 358 LNSARELFLSMPSKG 372



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L K    D    LF+ + + G+ PD+ ++S LI+ FC  G+      +
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++     PD+VTF+ LI              D LCK+G V +AK+L   M  + + P
Sbjct: 295 FDEMVDQGVQPDMVTFSVLI--------------DTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N++TY S+I GFC   D N A+ LF+ M  +G++P+ +++  +++  CK  K+ EA +L 
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M+Q G  P+  TY TLL G    G+V  AK+LF  M++ G
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYG 442



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M +     P V S++ ++        +D    LF  +   G+ PD+ T S+
Sbjct: 254 DEAKELFEEM-KAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSV 312

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G+V+    +L  +++    P+++T+ SLI                     K 
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKG 372

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD I+Y T+I+G CK   V +A  L+ +M      PNV TY ++++G        +AK
Sbjct: 373 LEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAK 432

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN-------------------------------- 203
           +LF  M   GV  N   + + +D LCKN                                
Sbjct: 433 KLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGL 492

Query: 204 ---GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              GK++ A  L + + Q G++PD  TYN ++ GFC  G+V++A  LF  ME  GC
Sbjct: 493 CKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGC 548



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         ++   LF  + S GL PD  +++ LIN +CK  +V     +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 94  LGRILRSCFTPDVVTFTSLIK----------------VCKPDAITYNTII-----DGLCK 132
              +L+   +P+V T+ +L+K                V K   ++ N+ I     DGLCK
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A ELF ++K  N K N+  Y+ +I G C A     A  LF ++  +G+QP+VVT
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT 519

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N+++   CK G++D A+ L + M ++G  PD   YNTLL GFC   ++    +L   M
Sbjct: 520 YNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKM 578



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 14/175 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + I L  L KN      + LF  L S     ++  +S LI+  CK G++   + +  ++ 
Sbjct: 450 YGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLS 509

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +    PDVVT              YN +I G CK G VD A  LF KM++    P+++ Y
Sbjct: 510 QEGLQPDVVT--------------YNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAY 555

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            +++ GFC  N   E  +L  +M+ + V PN  +  +++D LCK+ K  +   LL
Sbjct: 556 NTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 131 CKQGFVD--KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           CK G +   +A   F  M   +  P + ++  ++ G    N +++   L+ EM   G+ P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ T +++ + LC   ++ EA + +  +++ G  P+  TY TL+ G C+  R++ A  LF
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 249 VSMESMGC 256
           + M+ +GC
Sbjct: 185 LRMQKLGC 192



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NIM+    K    D    LF+++   G  PD+  ++ L+  FC+  ++     +
Sbjct: 515 PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKL 574

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCK 132
           L ++++   +P+  + T ++  +CK +   Y   +D L K
Sbjct: 575 LHKMVQKDVSPNAASCTIVVDMLCKDEK--YKKFVDLLPK 612


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 173/305 (56%), Gaps = 63/305 (20%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           IT  +A   F  M+  +P+PP +SSF  +L  LAK KHY  V  L+ ++  +G+ PD  T
Sbjct: 75  ITATQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCT 133

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
            +IL+NC C + RV  G  V+  ILR  + PD+VT+T+LIK                   
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQ 193

Query: 116 ---CKPDAITYNTIIDGLCKQGFV------------------------------------ 136
              C P+AITY T++ GLC+ G +                                    
Sbjct: 194 KLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALC 253

Query: 137 -----DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
                D+A++LF +MK + + P V++YTS+I GFC    W EAKRLF EM++QGVQPNVV
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVV 313

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFNV++D LCK GK+ EA  LL++MIQ G+ P+  TYN+L++GFCL G +N A+ELFVSM
Sbjct: 314 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 373

Query: 252 ESMGC 256
            S GC
Sbjct: 374 PSKGC 378



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K++  D    LF+ +   G+ P + +++ LI+ FC  G+      +
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRL 299

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++     P+VVTF              N +ID LCK+G V +AK+L   M  + + P
Sbjct: 300 FNEMVNQGVQPNVVTF--------------NVLIDVLCKEGKVIEAKDLLEVMIQRGIVP 345

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N++TY S+I GFC   D N A+ LF+ M  +G +P+V+ + V+++  CK  K++EA  L 
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M+Q G RPD  TY  LL G    G+V  AK+LF  M+  G
Sbjct: 406 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG 447



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M+      P V +FN+++  L K         L + +   G+ P+L T++ L
Sbjct: 295 EAKRLFNEMVN-QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 353

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  FC +G ++    +   +      PDV+ +T LI   CK                   
Sbjct: 354 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 413

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TY  ++ GL + G V  AK+LF  MK   +  ++  Y   + G C      EA  
Sbjct: 414 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 473

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF ++    ++ ++  FN ++D LCK GK++ A  L + + Q  ++PD  TYN ++  FC
Sbjct: 474 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFC 533

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G+V  A  LF  ME  GC
Sbjct: 534 RGGQVVKANILFQKMEKNGC 553



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           ++   LF  + S G  PD+  +++LIN +CK  +V     +   +L+    PDV T+ +L
Sbjct: 364 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423

Query: 113 I-------KVCKP--------------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +       KV                 D   Y   ++GLCK G + +A ELF K+K  N+
Sbjct: 424 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 483

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K ++  +  +I G C A     A  LF ++  + +QP+VVT+N+++ E C+ G++ +A+ 
Sbjct: 484 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 543

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L   M ++G  PD  TY TL+ GF  + ++    EL   M
Sbjct: 544 LFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMM 583



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 17/208 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +++ ML++   P  V ++  +L  L +         LF  +   G+  DLY + I 
Sbjct: 400 EAMKLYNGMLQVGKRPD-VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIF 458

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFV 136
           +N  CK G               C    +  F  L     K D   +N +IDGLCK G +
Sbjct: 459 LNGLCKNG---------------CLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL 503

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF K+  + ++P+VVTY  +I  FC      +A  LF +M   G  P+ +T+  +
Sbjct: 504 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +    ++ K+++   LL +M+Q  V  D
Sbjct: 564 IRGFFESKKLEKVVELLHMMVQRDVSLD 591



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 131 CKQGFVD--KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           CK G +   +A + F  M   N  P + ++T ++ G      +++   L+ +M   G+ P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  T N++++ LC   ++ E  +++  +++ G  PD  TY TL+ G C+  R++ A  LF
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 249 VSMESMGC 256
             M+ +GC
Sbjct: 190 TRMQKLGC 197



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 19/140 (13%)

Query: 21  CIFDYM-----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           C+F+ M     L+ +     +  FN ++  L K    +T   LF++L    L PD+ T++
Sbjct: 467 CLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYN 526

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           I+I+ FC+ G+V    ++  ++ ++               C PD ITY T+I G  +   
Sbjct: 527 IMIHEFCRGGQVVKANILFQKMEKNG--------------CTPDKITYATLIRGFFESKK 572

Query: 136 VDKAKELFLKMKDKNVKPNV 155
           ++K  EL   M  ++V  +V
Sbjct: 573 LEKVVELLHMMVQRDVSLDV 592


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 171/305 (56%), Gaps = 63/305 (20%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +T   AL  F  M+R  P+P  +SSFN +L  LAK KHY  V SL+ ++  +GL  D  T
Sbjct: 48  VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCF------------------------------- 102
            +IL+NC C + R+  GF     ILR  +                               
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 103 ----TPDVVTFTSLIKV---------------------------CKPDAITYNTIIDGLC 131
               TPDVVT+ +LIK                            CKP+ ITYN I+DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D+AK+LF +MK + + P++++Y S+I GFC A  W E+KRL  EM+DQG+QP++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFNV++D LCK GK+ EA  LL +MI+ G+ PD  TYN+L++GFC+ G +N A+ELFVSM
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346

Query: 252 ESMGC 256
            S GC
Sbjct: 347 PSKGC 351



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++  L K    D    LF+ + + G+ P + +++ LI+ FC  G+      +
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L     PD+VTF              N +ID LCK+G V +AK+L   M +  + P
Sbjct: 273 LDEMLDQGLQPDMVTF--------------NVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VTY S+I GFC   D N A+ LF+ M  +G +P+V+++NV+++   K  K++EA  L 
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M+  G RP+  TY++LL G  L G+V+ AK+LF  M++ G
Sbjct: 379 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 420



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M +     P + S+N ++        ++    L   +   GL PD+ T ++
Sbjct: 232 DEAKQLFEEM-KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNV 290

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G+V     +LG ++ S   PD+VT+ SLI                     K 
Sbjct: 291 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 350

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD I+YN +I+G  K   V++A +L+ +M     +PNV+TY S+++G   A   ++AK
Sbjct: 351 CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAK 410

Query: 176 RLFIEMMDQGVQPNVVTF-----------------------------------NVIMDEL 200
           +LF  M   G+  N  T+                                   N ++D L
Sbjct: 411 KLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGL 470

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK GK++ A  L + +   G  P+  TY  ++ GFC  G+V+ A  L   ME+ GC
Sbjct: 471 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 526



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         ++   LF  + S G  PD+ ++++LIN + K  +V     +
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 94  LGRILRSCFTPDVVTFTSLIK----------------VCKPDAI-----TYNTIIDGLCK 132
              +L     P+V+T+ SL+K                V K   I     TY   +DGLCK
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 437

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A +LF ++K  N K  +     +I G C A     A  LF ++ ++G +PNVVT
Sbjct: 438 NDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVT 497

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + +++   C+ G++D+A+ L+  M  +G  PD  TYNTL+ GF  + ++    +L   M
Sbjct: 498 YTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 556



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 17/226 (7%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G   T+   EA+ +++ ML +   P  ++  +++ G     K  D    LF  + + G+ 
Sbjct: 364 GYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK-VDDAKKLFSVMKAHGIA 422

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTII 127
            + YT+ I ++  CK                 C    +  FT L     K +    N +I
Sbjct: 423 ENSYTYGIFLDGLCK---------------NDCLFEAMKLFTELKSSNFKLEIENLNCLI 467

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DGLCK G ++ A ELF K+ ++  +PNVVTYT +I GFC     ++A  L  +M   G  
Sbjct: 468 DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 527

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           P+++T+N +M    ++ K++E   LL  M Q  V PDA T + ++D
Sbjct: 528 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 131 CKQGFVDKAKEL--FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           CK G V     L  F  M      P++ ++  ++ G      +++   L+ +M   G+  
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  T N++++ LC   ++ E  +    +++ G  P+  TYNTL+ G C+  R++ A  LF
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 249 VSMESMGC 256
           + M+ +GC
Sbjct: 163 LRMQKLGC 170


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/270 (43%), Positives = 165/270 (61%), Gaps = 33/270 (12%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +I+  +A   FD M+R       + SFN +L  LAK +HY  V SL+K+++  GL+PDL 
Sbjct: 74  SISVTQAHQFFDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
           T +ILINC C + R++ G   +  I+R  + PDVVTFT+LIK                  
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGF 165
               C P+ +TY T+I GLC  G ++ A +   +M +       N +PNV++Y+ +I G 
Sbjct: 188 QKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGL 247

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C   +W EA  LF EM+DQGVQPNVVTF+V++D LCK G++ +A  LL++MIQ G+ P+ 
Sbjct: 248 CKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNL 307

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           FTY +L+ GFCL G +N AKELFVSM S G
Sbjct: 308 FTYTSLIKGFCLVGDLNSAKELFVSMPSKG 337



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 56/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K  +++  + LF  +   G+ P++ T S+LI+  CK G+V     +
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
           L  +++    P++ T+TSLIK  C                    +PD I+YN +I+G CK
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIR----------------------------- 163
              V++A +LF +M    + P+V T   +++                             
Sbjct: 355 TLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCI 414

Query: 164 ------GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                 G C      EA +LF E+    ++ ++ TF  ++D LCK GK++ A  L + + 
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLY 474

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G++PDA  Y++++ GFC  G+V+ A  LF  ME  GC
Sbjct: 475 EEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGC 513



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           ++   LF  + S G  PD+ ++++LIN +CK  +V     +   +L     PDV T   L
Sbjct: 324 NSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVL 383

Query: 113 IK----------------VCKPDAITYNTII-----DGLCKQGFVDKAKELFLKMKDKNV 151
           +K                V KP A+  +  I     DGLCK G++ +A +LF +++  N+
Sbjct: 384 LKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNM 443

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K ++ T+  +I G C A     A  LF ++ ++G+QP+ + ++ ++   CK G++D+A+ 
Sbjct: 444 KLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANI 503

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L   M ++G  PD  TY+ L+ GF  + ++    +L   M
Sbjct: 504 LFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRM 543



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 23/225 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N+++    K    +  + LF  +   G++PD+ T  +L+      G+V      
Sbjct: 340 PDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDA-KE 398

Query: 94  LGRILRSCFTPDVVTFTSLI--KVCKPDAI--------------------TYNTIIDGLC 131
           L R+++    P  +    +    +CK   I                    T+  +IDGLC
Sbjct: 399 LFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLC 458

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G ++ A ELF K+ ++ ++P+ + Y+S+I GFC     ++A  LF +M + G  P+++
Sbjct: 459 KAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLI 518

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           T++++M    ++ K+++   LL  MI+  V PD   Y  + D  C
Sbjct: 519 TYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVC 563



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           I L  L KN +    + LF  L S  +  D+ T   LI+  CK G++   + +  ++   
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                           +PDA+ Y+++I G CK+G VDKA  LF KM++    P+++TY+ 
Sbjct: 477 GI--------------QPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSI 522

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           ++RGF  +N   +  +L   M+++ V P+   + ++ D +CK+ K  E   LL 
Sbjct: 523 LMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQ 576



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 60/103 (58%)

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ ++  ++ G      +++   L+ +M   G+ P+++T N++++ LC   +++E  + +
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +++ G  PD  T+ TL+ G C+  R+  A +LF+ M+ +GC
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGC 192


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 173/310 (55%), Gaps = 74/310 (23%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G+IT I   +A   F  M+  +P+PP +SSF  +L  LAK KHY  V  L+ ++  +G+ 
Sbjct: 73  GNITAI---QAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS 128

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------- 114
           PD  T +IL+NC C + RV  G  V+  ILR  + PD+VT+T+LIK              
Sbjct: 129 PDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALL 188

Query: 115 -------VCKPDAITYNTIIDGLCKQGFV------------------------------- 136
                   C P+AITY T++ GLC+ G +                               
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 137 ----------DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
                     D+A++LF +MK + + P V++YTS++        W EAKRLF EM++QGV
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGV 300

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           QPNVVTFNV++D LCK GK+ EA  LL++MIQ G+ P+  TYN+L++GFCL G +N A+E
Sbjct: 301 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360

Query: 247 LFVSMESMGC 256
           LFVSM S GC
Sbjct: 361 LFVSMPSKGC 370



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 20/258 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR-LNSTGLF-----PD 70
           ++A  +F  M ++  +P  ++   +M G L +  +    L L +  LN + L+     P 
Sbjct: 183 SKAALLFTRMQKLGCTPNAITYGTLMKG-LCRTGNISIALKLHQEMLNDSSLYGINFKPV 241

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK 117
           + ++SI+I+  CK  R      +   +     TP V+++TSL+             +  +
Sbjct: 242 VISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQ 301

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +T+N +ID LCK+G V +AK+L   M  + + PN++TY S+I GFC   D N A+ L
Sbjct: 302 PNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 361

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F+ M  +G +P+V+ + V+++  CK  K++EA  L + M+Q G RPD  TY  LL G   
Sbjct: 362 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 421

Query: 238 TGRVNHAKELFVSMESMG 255
            G+V  AK+LF  M+  G
Sbjct: 422 GGKVGDAKKLFGVMKVYG 439



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 29/241 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K++  D    LF+ +   G+ P + +++ L+  + +  R+ +  V 
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--WEEAKRLFNEMVN 297

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
            G        P+VVTF  LI V CK                    P+ +TYN++I+G C 
Sbjct: 298 QG------VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 351

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A+ELF+ M  K  +P+V+ YT +I G+C  +   EA +L+  M+  G +P+V T
Sbjct: 352 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 411

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  L + GK+ +A  L  +M  +G+  D + Y   L+G C  G +  A ELF  ++
Sbjct: 412 YGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK 471

Query: 253 S 253
           S
Sbjct: 472 S 472



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 22/266 (8%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           T++   EA  +F+ M+      P V +FN+++  L K         L + +   G+ P+L
Sbjct: 281 TSLMWEEAKRLFNEMVN-QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 339

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
            T++ LI  FC +G ++    +   +      PDV+ +T LI   CK             
Sbjct: 340 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 399

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD  TY  ++ GL + G V  AK+LF  MK   +  ++  Y   + G C    
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 459

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA  LF ++    ++ ++  FN ++D LCK GK++ A  L + + Q  ++PD  TYN 
Sbjct: 460 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 519

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  FC  G+V  A  LF  ME  GC
Sbjct: 520 MIHEFCRGGQVVKANILFQKMEKNGC 545



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           ++   LF  + S G  PD+  +++LIN +CK  +V     +   +L+    PDV T+ +L
Sbjct: 356 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 415

Query: 113 I-------KVCKP--------------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +       KV                 D   Y   ++GLCK G + +A ELF K+K  N+
Sbjct: 416 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 475

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K ++  +  +I G C A     A  LF ++  + +QP+VVT+N+++ E C+ G++ +A+ 
Sbjct: 476 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 535

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L   M ++G  PD  TY TL+ GF  + ++    EL   M
Sbjct: 536 LFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMM 575



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 17/209 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +++ ML++   P  V ++  +L  L +         LF  +   G+  DLY + I 
Sbjct: 392 EAMKLYNGMLQVGKRPD-VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIF 450

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFV 136
           +N  CK G               C    +  F  L     K D   +N +IDGLCK G +
Sbjct: 451 LNGLCKNG---------------CLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL 495

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF K+  + ++P+VVTY  +I  FC      +A  LF +M   G  P+ +T+  +
Sbjct: 496 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 555

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           +    ++ K+++   LL +M+Q  V  D 
Sbjct: 556 IRGFFESKKLEKVVELLHMMVQRDVSLDV 584


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 161/269 (59%), Gaps = 33/269 (12%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           IT  +AL  FD M+R       + SFN++LG LAK KHY  V SL+K+++  GL P+ +T
Sbjct: 75  ITSTQALQFFDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFT 128

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
            +ILINC C + RV  G   +  I+R  + PDVVT+TSLIK                   
Sbjct: 129 LNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQ 188

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGFC 166
              C P+ +TY T+I GLC+ G ++ A +L  +M +       N KPN+ +Y  +I   C
Sbjct: 189 KLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELC 248

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
               W EAKRLF EM+DQGV+P+VVTF+ ++D LCK G + EA   L+ M+  G+ PD F
Sbjct: 249 KIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLF 308

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           T+ +L++GFCL G ++ AKELF+SM S G
Sbjct: 309 TFTSLIEGFCLVGDLDSAKELFLSMPSKG 337



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+NI++  L K   +     LF  +   G+ PD+ T S LI+  CK G V      
Sbjct: 235 PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKF 294

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     PD+ TFTSLI              +G C  G +D AKELFL M  K  +P
Sbjct: 295 LETMMLRGIVPDLFTFTSLI--------------EGFCLVGDLDSAKELFLSMPSKGYEP 340

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V++YT +I G+C   +  EA +L+ EM+  G  P++ TF V++  L   GK+ +A  L 
Sbjct: 341 DVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLF 400

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            ++  H V  + +  +  LDG C  G +  A ELF  ++S
Sbjct: 401 GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKS 440



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D+   LF  + S G  PD+ ++++LI  +CK   V     +   +LR    PD+ TF  L
Sbjct: 324 DSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVL 383

Query: 113 IK----------------VCKPDAITYNTII-----DGLCKQGFVDKAKELFLKMKDKNV 151
           +K                V KP A+  N  I     DGLCK G + +A ELF ++K  N+
Sbjct: 384 LKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNM 443

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K ++ ++  +I G C A     A  LF ++  +G+QP+VVT+ ++++  CKNG++D A+ 
Sbjct: 444 KLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANI 503

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L  +M ++G  P+  TY+ LL GF    ++    +L   M
Sbjct: 504 LFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKM 543



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +++ H  P  +   ++ L  L KN      + LF  L S  +  D+ + + LI+  CK  
Sbjct: 402 VVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKAR 461

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++   + +  ++ +    PDVVT              Y  +I+G CK G VD A  LF  
Sbjct: 462 KLETAWELFEKLSQEGLQPDVVT--------------YCIMINGFCKNGQVDNANILFQM 507

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M++    PN++TY++++ GF   N   E  +L  +M+ + V      + ++ D + K+ K
Sbjct: 508 MEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEK 567

Query: 206 MDEASSLLD 214
             E   +L 
Sbjct: 568 CREWLDILQ 576



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 131 CKQGFVDKAKEL-FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           CK+G +   + L F  +  +++    +++  ++        +++   L+ +M   G+ PN
Sbjct: 70  CKKGNITSTQALQFFDLMMRSI----ISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPN 125

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
             T N++++ LC   ++ E  S +  +++ G  PD  TY +L+ G C+  R++ A  LF+
Sbjct: 126 FFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFI 185

Query: 250 SMESMGC 256
            M+ +GC
Sbjct: 186 RMQKLGC 192


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 164/280 (58%), Gaps = 38/280 (13%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +T   AL  F  M+R  P+P  +SSFN +L  LAK KHY  V SL+ ++  +GL  D  T
Sbjct: 48  VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
            +IL+NC C + R+  GF     ILR  ++P++VT+ +LIK                   
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK------NVKPNVVTYTSVIRGFC 166
              C PD +TY T+I GLC  G ++ A +L  +M +       N KPNV+TY  ++ G C
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226

Query: 167 YANDWNEAKRLFIEM----------MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                +EAK+LF EM          +DQG+QP++VTFNV++D LCK GK+ EA  LL +M
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 286

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           I+ G+ PD  TYN+L++GFC+ G +N A+ELFVSM S GC
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 326



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 24/230 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP----------DLYTHSILINCFCK 83
           P V ++NI++  L K    D    LF+ + + G+ P          D+ T ++LI+  CK
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCK 272

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
            G+V     +LG ++ S   PD+VT              YN++I+G C  G ++ A+ELF
Sbjct: 273 EGKVIEAKKLLGVMIESGIVPDLVT--------------YNSLIEGFCMVGDLNSARELF 318

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
           + M  K  +P+V++Y  +I G+       EA +L+ EM+  G +PNV+T++ ++  +   
Sbjct: 319 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLA 378

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           GK+D+A  L  +M  HG+  +++TY   LDG C    +  A +LF  ++S
Sbjct: 379 GKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKS 428



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         ++   LF  + S G  PD+ ++++LIN + K  +V     +
Sbjct: 293 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 352

Query: 94  LGRILRSCFTPDVVTFTSLIK----------------VCKPDAI-----TYNTIIDGLCK 132
              +L     P+V+T+ SL+K                V K   I     TY   +DGLCK
Sbjct: 353 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 412

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A +LF ++K  N K  +     +I G C A     A  LF ++ ++G +PNVVT
Sbjct: 413 NDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVT 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + +++   C+ G++D+A+ L+  M  +G  PD  TYNTL+ GF  + ++    +L   M
Sbjct: 473 YTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 531



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 17/226 (7%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G   T+   EA+ +++ ML +   P  ++  +++ G     K  D    LF  + + G+ 
Sbjct: 339 GYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK-VDDAKKLFSVMKAHGIA 397

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTII 127
            + YT+ I ++  CK                 C    +  FT L     K +    N +I
Sbjct: 398 ENSYTYGIFLDGLCK---------------NDCLFEAMKLFTELKSSNFKLEIENLNCLI 442

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DGLCK G ++ A ELF K+ ++  +PNVVTYT +I GFC     ++A  L  +M   G  
Sbjct: 443 DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 502

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           P+++T+N +M    ++ K++E   LL  M Q  V PDA T + ++D
Sbjct: 503 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 548


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 18/256 (7%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
           L++   G+I  I   +A   FD M+R HP PP +SSFN +LG LAK  HY  + SL+ ++
Sbjct: 61  LRNCKTGNIDVI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNKM 116

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
              GL PDL+T +IL NC C + RVS G   +  ILR  + PD+VT+ +LIK        
Sbjct: 117 RLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKG------- 169

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
               + GLCK G  D+AKE+F +MK + + PNV++Y+S++ GFC A    E+KRLF EM+
Sbjct: 170 ----LYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMV 225

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL---MIQHGVRPDAFTYNTLLDGFCLTG 239
           DQGVQPN+V FNV++D LCK GK+ + SS   L   M   G   +  +Y  L++G+C   
Sbjct: 226 DQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIW 285

Query: 240 RVNHAKELFVSMESMG 255
           +V  A  L+  M  +G
Sbjct: 286 KVEEAMNLYNEMPQVG 301



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 27/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLS---LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P +  FN+++  L K      + S   LF  + S G   +  +++ILIN +CK+ +V   
Sbjct: 231 PNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 290

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK----------------VCKPDAIT-----YNTIIDG 129
             +   + +    P+V T+++L+                 V K   I+     Y   +DG
Sbjct: 291 MNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDG 350

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G + +A ELF ++K  N K +  +Y+ +I G C A     A   F ++  +G+QPN
Sbjct: 351 LCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 410

Query: 190 VVTFNVIMDELCKNGKMDEASSL---LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           VVT N+++   C+  ++D+A+ L   ++ M ++G  PD  TYNTLL GFC + ++     
Sbjct: 411 VVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVN 470

Query: 247 LFVSM 251
           L   M
Sbjct: 471 LLHKM 475



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 24/205 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+ I++    K    +  ++L+  +   G  P++ T+S L+    + G+V     + G +
Sbjct: 273 SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM 332

Query: 98  LRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQGFV 136
             S  + D   +   +  +CK                     D  +Y+ +IDGLCK G V
Sbjct: 333 KASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV 392

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF--IEMMDQ-GVQPNVVTF 193
           + A E F ++  + ++PNVVT   +I GFC     ++A  LF  +E M++ G  P+++T+
Sbjct: 393 EIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITY 452

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQ 218
           N ++   C++ K++E  +LL  M +
Sbjct: 453 NTLLRGFCESNKLEEVVNLLHKMFK 477


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/195 (51%), Positives = 138/195 (70%), Gaps = 3/195 (1%)

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITY 123
            GL PDL+T +IL NC C + RVS G   +  ILR  + PD+VT+ +LIK +C+   I+ 
Sbjct: 4   AGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISV 63

Query: 124 NT--IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            T  IIDGLCK G  D+AKE+F +MK + + PNV++Y+S++ GFC A    E+KRLF EM
Sbjct: 64  ATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEM 123

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +DQGVQPN+V FNV++D LCK GK+ EA  LL++ IQ G+  D  TYN+L+DGFC  G +
Sbjct: 124 VDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183

Query: 242 NHAKELFVSMESMGC 256
           + A++LF+SM S GC
Sbjct: 184 SSARKLFLSMPSKGC 198



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 21/234 (8%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           I++  L K  H D    +F+ + + G+ P++ ++S L++ FC  G++     +   ++  
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 101 CFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCKQGFVDKA 139
              P++V F  LI + CK                     D +TYN++IDG CK G +  A
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSA 186

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           ++LFL M  K  + N ++YT +I G+C      EA  L+ EM   G +PNV T++ ++  
Sbjct: 187 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 246

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           L + GK+ +A+ L  +M   G+  D+  Y   LDG C  G +  A ELF  ++S
Sbjct: 247 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKS 300



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 24/238 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    K     +   LF  + S G   +  +++ILIN +CK+ +V     +   +
Sbjct: 169 TYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEM 228

Query: 98  LRSCFTPDVVTFTSLIK----------------VCKPDAIT-----YNTIIDGLCKQGFV 136
            +    P+V T+++L+                 V K   I+     Y   +DGLCK G +
Sbjct: 229 PQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVL 288

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ELF ++K  N K +  +Y+ +I G C A     A   F ++  +G+QPNVVT N++
Sbjct: 289 FEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIM 348

Query: 197 MDELCKNGKMDEASSL---LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +   C+  ++D+A+ L   ++ M ++G  PD  TYNTLL GFC + ++     L   M
Sbjct: 349 IHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN+++  L K         L +     G+  DL T++ LI+ FCK+G +S    +
Sbjct: 130 PNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKL 189

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +       + +++T LI   CK                    P+  TY+T++ GL +
Sbjct: 190 FLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQ 249

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V  A +LF  MK   +  +   Y   + G C      EA  LF E+     + +  +
Sbjct: 250 TGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFES 309

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK GK++ A      + Q G++P+  T N ++ GFC   +V+ A  LF  ME
Sbjct: 310 YSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME 369

Query: 253 SM---GC 256
            M   GC
Sbjct: 370 KMEENGC 376



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 24/206 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+ I++    K    +  ++L+  +   G  P++ T+S L+    + G+V     + G +
Sbjct: 204 SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM 263

Query: 98  LRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGLCKQGFV 136
             S  + D   +   +  +CK   +                    +Y+ +IDGLCK G V
Sbjct: 264 KASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV 323

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF--IEMMDQ-GVQPNVVTF 193
           + A E F ++  + ++PNVVT   +I GFC     ++A  LF  +E M++ G  P+++T+
Sbjct: 324 EIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITY 383

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQH 219
           N ++   C++ K++E  +LL  M + 
Sbjct: 384 NTLLRGFCESNKLEEVVNLLHKMFKR 409


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 157/278 (56%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+  FN ++G L K KHY T +SLFK++   G+ PDL+T +ILINCFC +G+++  F V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
           LG+IL+  + P+ +T  +L+K                                    +CK
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               P+ + YNTIIDGLCK   V++A +L+ +M  + + PNV+T
Sbjct: 128 IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I GFC A    EA  L  EM+ + + PNV T+ ++MD LCK GK+ EA +LL +M 
Sbjct: 188 YSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT 247

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + GV+P+  +YNTL+DG+CL G V +AK++F +M   G
Sbjct: 248 KEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKG 285



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+    + P V  +N ++  L K+K  +    L+  +++ G+FP++ T+S LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++   F +L  ++     P+V T+T L+              D LCK+G V +AK L   
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILM--------------DALCKEGKVKEAKNLLAV 245

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + VKPNVV+Y +++ G+C   +   AK++F  M+ +GV PNV ++N+++D LCK+ +
Sbjct: 246 MTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKR 305

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +DEA +LL  ++   + P+  TY++L+DGFC  GR+  A +L   M   G
Sbjct: 306 VDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRG 355



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NIM+  L K+K  D  ++L + +    + P+  T+S LI+ FCK+GR++    +
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +       DVVT+TSL+              D LCK   +DKA  LF+KMK++ ++P
Sbjct: 348 LKEMYHRGQPADVVTYTSLL--------------DALCKNQNLDKATALFMKMKERGIQP 393

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TYT++I G C       A++LF  ++ +G + NV T+NV++  LCK G +DEA ++ 
Sbjct: 394 NKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMK 453

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             M ++G  PDA T+  ++       + + A++L   M
Sbjct: 454 SKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L K        +L   +   G+ P++ +++ L++ +C +G V +   +
Sbjct: 218 PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQM 277

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              +++    P+V ++  +I ++CK                    P+ +TY+++IDG CK
Sbjct: 278 FHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A +L  +M  +    +VVTYTS++   C   + ++A  LF++M ++G+QPN  T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK G+   A  L   ++  G R + +TYN ++ G C  G ++ A  +   ME
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKME 457

Query: 253 SMGC 256
             GC
Sbjct: 458 ENGC 461



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 26/176 (14%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            P  V ++  +L  L KN++ D   +LF ++   G+ P+ YT++ LI+  CK GR  +  
Sbjct: 356 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQ 415

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +   +L      +V T+  +I  +CK                    PDA+T+  II  L
Sbjct: 416 KLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSL 475

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            ++   DKA++L  +M    +  +++ +     G    N+ ++A++L  EM+ +G+
Sbjct: 476 FEKDQNDKAEKLLHEM----IAKDLLRFRD-FHGERSPNENDKAEKLLHEMIAKGL 526


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 153/263 (58%), Gaps = 22/263 (8%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F  ML MHP PPP+  F  +L  +AK KHY TVLSL K+++S G+ PD+YT 
Sbjct: 36  TLDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 94

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +I+IN FC + RV     VL +IL+    PD  TFT+L++ +C                 
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+++GLCK   + +A  LF +M  K + P++ TY S+I   C   +W  
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              L  EM+   + PNVV+ N+++D LCK GK+ EA  ++D+MIQ GV PD  TY  L+D
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G CL   ++ A ++F  M   GC
Sbjct: 275 GHCLRSEMDEAVKVFDMMVRNGC 297



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 139/259 (53%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F  M+    SP  + ++N ++  L     +  V +L   +  + + P++ + +I+
Sbjct: 179 EALNLFSEMIAKGISPD-IFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIV 237

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------------IKV--------C 116
           ++  CK G+V+    V+  +++    PDVVT+ +L             +KV        C
Sbjct: 238 VDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGC 297

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + ++YNT+I+G CK   +DKA  LF +M  + + PN +TY+++I G C+     +A  
Sbjct: 298 VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIA 357

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+  G  PN+VT+++++D LCKN ++ EA +LL  +    + PD   YN  +DG C
Sbjct: 358 LFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMC 417

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++   G
Sbjct: 418 RAGDLEAARDLFSNLAPRG 436



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+R +     V S+N ++    K +  D  + LF+ +    L P+  T+S 
Sbjct: 283 DEAVKVFDMMVR-NGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C +GR+     +   ++     P++VT              Y+ ++D LCK   +
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVT--------------YSILLDYLCKNHRL 387

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L   ++  N+ P+V  Y   I G C A D   A+ LF  +  +G+QP+V T N++
Sbjct: 388 AEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIM 447

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK G +DEAS L   M ++G   +  TYNT+  G     + + A +L   M + G
Sbjct: 448 IRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG 506



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S NI++  L K         +   +   G+ PD+ T++ L++  C    +     V
Sbjct: 229 PNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKV 288

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDGLCK 132
              ++R+    +VV++ +LI                 ++C+    P+ +TY+T+I GLC 
Sbjct: 289 FDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCH 348

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A  LF +M      PN+VTY+ ++   C  +   EA  L   +    + P+V  
Sbjct: 349 VGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQV 408

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+ +D +C+ G ++ A  L   +   G++PD +T+N ++ G C  G ++ A +LF  M+
Sbjct: 409 YNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMD 468

Query: 253 SMGC 256
             GC
Sbjct: 469 ENGC 472



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R    P  ++   ++ G     +  D + +LF  + + G  P+L T+SI
Sbjct: 318 DKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAI-ALFNEMVACGQIPNLVTYSI 376

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK  R++    +L  I  S   PDV  +   I                     + 
Sbjct: 377 LLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG 436

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD  T+N +I GLCK+G +D+A +LF +M +     N  TY ++ +G    N  + A 
Sbjct: 437 LQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAI 496

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +L  EM+ +G   +V T  +++  L  +G
Sbjct: 497 QLLEEMLARGFSADVSTTALLVKMLSDDG 525


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 157/295 (53%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+  F+ MLRM P PPP+  F  +LG L K KHY  V+ LF+R+   G+  +  T +I
Sbjct: 31  NDAIDSFNRMLRMRP-PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LIN +C + +++  F V  +IL+  + PD++T+T+LI+                      
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    PD + YNTIIDGLCK   V  A 
Sbjct: 150 IKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAF 209

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +L+ +M +K V PNVVTYTS+I GFC     ++A  L  EM+ + V PNV TFN ++D L
Sbjct: 210 DLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGL 269

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GKM EA SL+ +M++ GV PD FTYN L+DG+ L      AK +F  M  MG
Sbjct: 270 CKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMG 324



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 127/247 (51%), Gaps = 27/247 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSHG 90
           P V +FN ++  L K        SL   +   G+ PD++T++ L++ +    + G+  + 
Sbjct: 257 PNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNV 316

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDG 129
           F ++ ++  +C   DV +++ +I                         PD + Y+++IDG
Sbjct: 317 FNIMAQMGVTC---DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDG 373

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G ++ A +   +M D+   PNV+TYTS+I   C ++  ++A  L  ++ DQG+Q N
Sbjct: 374 LCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQAN 433

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+N+++D LCK+G++ +A  +   ++  G   D  TY+ +++G C     + A  L  
Sbjct: 434 MYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLS 493

Query: 250 SMESMGC 256
            ME  GC
Sbjct: 494 KMEDKGC 500



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M +M  +   V S+++M+  L+K K  D  + LF+ + +  + PD+  +S LI+  
Sbjct: 316 VFNIMAQMGVTCD-VHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGL 374

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK GR++     +  +      P+V+T+TSLI              D LCK   VDKA  
Sbjct: 375 CKSGRINSALKYVDEMHDRGQPPNVITYTSLI--------------DALCKSHQVDKAIA 420

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  K+KD+ ++ N+ TY  ++ G C      +A+++F +++ +G   +VVT++++++ LC
Sbjct: 421 LLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLC 480

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           K    DEA +LL  M   G  PDA  Y T+++ F      + A++L   M
Sbjct: 481 KESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  L K+K       L+  +    +FP++ T++ LI  FC +G++   F +
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     P+V TF              NT++DGLCK+G + +AK L   M  + V P
Sbjct: 247 LNEMVLKNVNPNVCTF--------------NTLVDGLCKEGKMREAKSLVAVMMKEGVGP 292

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY +++ G+    +  +AK +F  M   GV  +V +++V++  L K   +DEA  L 
Sbjct: 293 DVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLF 352

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M    V PD   Y++L+DG C +GR+N A +    M   G
Sbjct: 353 EGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRG 394



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 16/161 (9%)

Query: 25  YMLRMHP--SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           Y+  MH    PP V ++  ++  L K+   D  ++L K++   G+  ++YT++IL++  C
Sbjct: 386 YVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLC 445

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K GR++    V   +L      DVVT              Y+ +I+GLCK+   D+A  L
Sbjct: 446 KDGRLTDAQKVFQDLLMKGHNVDVVT--------------YSIMINGLCKESLFDEALTL 491

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
             KM+DK   P+ + Y ++I  F   +  ++A++L  EM+D
Sbjct: 492 LSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I +  I+  L K         LF +M+   ++ N +T   +I  +C+    N A  +
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +++  G QP+++T+  ++  LC NG++ E+ +  D ++  G++ D  +Y TL++G C 
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 238 TGRVNHAKELFVSMESMGC 256
            G+   A  L   +E   C
Sbjct: 167 IGQTGPALRLLRKIEGEIC 185



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A + F +M      P ++ +  ++        +     LF  M   G+Q N +T N+
Sbjct: 30  LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C   +++ A S+   +++ G +PD  TY TL+ G CL G+V  +      + S G
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ +LR + +PP    FN +LG L K+KHY TVL L +++   G+ P+L   +I
Sbjct: 67  DDAVSLFNRLLRRNTTPPAFE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC++G +   F V  +IL+  + PD +TFT+LIK                      
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+ + YNTIID +CK   V++A 
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAF 245

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  K + P+VVTY+++I GFC     N+A  LF +M+ + ++P+V TFN++++  
Sbjct: 246 DLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAF 305

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK+GKM E  ++ D+M++ G++P+  TYN+L+DG+CL   VN AK +F +M   G
Sbjct: 306 CKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 122/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K K  +    LF  + S G+ PD+ T+S LI+ FC +G+++    +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++              ++  KPD  T+N +++  CK G + + K +F  M  + +KP
Sbjct: 283 FNKMI--------------LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY S++ G+C   + N+AK +F  M   GV P++ +++++++  CK  K DEA +L 
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +  + PD  TY++L+DG   +GR+++A +L   M   G
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   +FD M++    P  V+  ++M G CL K    +   S+F  +   G+ PD+ ++SI
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVK--EVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +IN FCK+ +      +   + R    PDVVT              Y+++IDGL K G +
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT--------------YSSLIDGLSKSGRI 416

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L  +M D+ V P + TY S++   C  +  ++A  L  ++ D+G+QPN+ T++++
Sbjct: 417 SYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSIL 476

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  LC++GK+++A  + + ++  G   +  TY  ++ GFC+ G  N A  L   ME  GC
Sbjct: 477 IKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGC 536



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 22/228 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M +   +P  + S++IM+    K K +D  ++LFK ++   + PD+ T+S 
Sbjct: 347 NKAKSIFNTMAQGGVNPD-IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+   K GR+S+   ++ ++      P + T+ S++                     K 
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TY+ +I GLC+ G ++ A+++F  +  K    NV TYT +I+GFC    +NEA 
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEAL 525

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
            L  +M D G  P+  T+ +I+  L K  + D A  LL  MI  GVRP
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 28  RMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +MH    PP + ++N +L  L K    D  ++L  +L   G+ P++YT+SILI   C+ G
Sbjct: 425 QMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSG 484

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++     V   +L              +K    +  TY  +I G C +G  ++A  L  K
Sbjct: 485 KLEDARKVFEGLL--------------VKGHNLNVDTYTIMIQGFCVEGLFNEALALLSK 530

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           M+D    P+  TY  +I      ++ + A++L  EM+ +GV+P  + 
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K + I+Y++          VD A  LF ++  +N  P    +  ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M  +G++PN+V  N++++  C+ G +  A S+   +++ G  PD  T+ TL+ G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLC 166

Query: 237 LTGRVNHA 244
           L G++  A
Sbjct: 167 LKGQIQQA 174



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K N ++Y+S    F   ND ++A  LF  ++ +   P    FN I+  L K+        
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M   G++P+    N L++ FC  G +  A  +F  +  MG
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 150/263 (57%), Gaps = 22/263 (8%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL  F+ ML   P PP    FN +L  +AK KH+ T+LSL ++++S G+ PD+YT 
Sbjct: 25  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +I+IN  C + RV   F  L +IL+    PD  TFT+LI+ +C                 
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK   V +A  +F +M  K + PN+VTY S+I G C   +W  
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 203

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              L  EM+D  + P+V T N ++D LCK G + EA  ++D+MI  GV P+  TYN L+D
Sbjct: 204 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 263

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G CL   V+ A ++F +M    C
Sbjct: 264 GHCLRNEVDVAVKVFDTMVHKDC 286



 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 136/242 (56%), Gaps = 28/242 (11%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP    F  +L  +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 561 TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 619

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +ILIN FC + R+ + F VL ++L+  F PDVVT              Y T+++GLCK  
Sbjct: 620 NILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVT--------------YGTLMNGLCK-- 663

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
                      M  K + P++ TY S+I   C   +W     L  EM++  + PNVV F+
Sbjct: 664 -----------MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 712

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D LCK G +  A  ++D+MI+ GV PD  TY  L+DG CL   ++ A ++F +M   
Sbjct: 713 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 772

Query: 255 GC 256
           GC
Sbjct: 773 GC 774



 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF  M+    SP  V+ +N ++  L K   +  V +L   +  + + PD++T + +
Sbjct: 168 EAFNIFSEMITKGISPNIVT-YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 226

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G V+    V+  ++     P+VVT+ +L+                     K C
Sbjct: 227 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + I+YNT+I+G CK   VDKA  LF +M  + + PN VTY ++I G C+     +A  
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 346

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P++VT+  + D LCKN  +D+A +LL  +      PD   Y T+LDG C
Sbjct: 347 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 406

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 407 RAGELEDARDLFSNLSSKG 425



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L     +  V +L   + ++ + P++   S +++  CK G ++    V
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +++    PDVVT+T+L+                     K C P+  +YN +I+G C+
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +DKA  L  +M  + +  + VTY ++I G C+      A  LF EM+  G  P++VT
Sbjct: 791 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 850

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D LCKN  + EA  LL  +    +  D   YN  +DG C  G +  A++LF ++ 
Sbjct: 851 YRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLS 910

Query: 253 SMG 255
           S G
Sbjct: 911 SKG 913



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+     P  V+   +M G   +N+  D  + +F  +       ++ +++ L
Sbjct: 238 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE-VDVAVKVFDTMVHKDCVANVISYNTL 296

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK+  V     +   + R   TP+ VT+ +LI  +C                    
Sbjct: 297 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 356

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY T+ D LCK   +DKA  L   ++  N  P++  YT+++ G C A +  +A+ 
Sbjct: 357 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 416

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+QPNV T+N+++  LCK G + EAS L   M ++G  P+  TYN +  GF 
Sbjct: 417 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 476

Query: 237 LTGRVNHAKELFVSMESMG 255
                    EL   M + G
Sbjct: 477 RNNEALRTIELLEEMLARG 495



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 15/209 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S+NI++    + +  D  + L ++++  GL  D  T++ 
Sbjct: 760 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C +GR+ H   +   ++ S   PD+VT              Y  ++D LCK   +
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVT--------------YRILLDYLCKNHHL 864

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L   ++  N+  +++ Y   I G C A +   A+ LF  +  +G+QP+V T+N++
Sbjct: 865 AEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIM 924

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           +  LCK G +DEA+ L   M ++ +  ++
Sbjct: 925 IHGLCKRGLLDEANKLFRKMDENDIWSNS 953



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 23/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +FD M+        V S+N ++    K +  D  + LF+ ++   L P+  T++ LI
Sbjct: 274 AVKVFDTMVH-KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 332

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  C +GR+     +   ++     PD+VT+ +L   +CK                    
Sbjct: 333 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 392

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   Y TI+DG+C+ G ++ A++LF  +  K ++PNV TY  +I G C      EA +L
Sbjct: 393 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 452

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F EM   G  PN  T+N+I     +N +      LL+ M+  G   D  T  TLL G 
Sbjct: 453 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST-TTLLVGM 509



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 17/232 (7%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           + D M++    P  V+   +M G CL      D  + +F  +   G  P++ +++ILIN 
Sbjct: 730 VVDMMIKRGVEPDVVTYTALMDGHCL--RSEMDEAVKVFDTMVHKGCVPNVRSYNILING 787

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           +C++ R+     +L ++          +   LI     D +TYNT+I GLC  G +  A 
Sbjct: 788 YCQIQRMDKAMGLLEQM----------SLQGLIA----DTVTYNTLIHGLCHVGRLQHAI 833

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M      P++VTY  ++   C  +   EA  L   +    +  +++ +N+ +D +
Sbjct: 834 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 893

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           C+ G+++ A  L   +   G++PD  TYN ++ G C  G ++ A +LF  M+
Sbjct: 894 CRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMD 945



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R   +P  V+ +N ++  L         +SLF  + + G  PDL T+  
Sbjct: 307 DKAMYLFEEMSRQELTPNTVT-YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L +  CK   +     +L  I  S + PD+  +T+++                     K 
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYN +I GLCKQG + +A +LF +M      PN  TY  + RGF   N+     
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            L  EM+ +G   +V T  +++  L  +G
Sbjct: 486 ELLEEMLARGFSVDVSTTTLLVGMLSDDG 514



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 107/306 (34%), Gaps = 68/306 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+      P + ++  +   L KN+H D  ++L K +  +   PD+  ++ 
Sbjct: 342 QDAISLFHEMVA-RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +++  C+ G +     +   +      P+V T+  +I                       
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT-------------SVI 162
           C P+  TYN I  G  +     +  EL  +M  +    +V T T             SV 
Sbjct: 461 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVK 520

Query: 163 RGFC---------------------------------YANDWNEAKRLFIEMMDQGVQPN 189
           +  C                                 + N  ++A   F  M+     P+
Sbjct: 521 QILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPS 580

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            V F  ++  + K        SL   M   G+ PD +T N L++ FC   R+ +A  +  
Sbjct: 581 TVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLA 640

Query: 250 SMESMG 255
            +  +G
Sbjct: 641 KLLKLG 646



 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  +EA   F  M+ +   P+ V FN ++  + K        SL   M   G+ PD +T 
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++  C   RV+ A      +  +G
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLG 110


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/278 (36%), Positives = 152/278 (54%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+  F  +LG L K KHY TV+SL K++ + G+ PDL T SILINCFC +G+++  F V
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
           LG+IL+  + P+ +   +L+K                                    +CK
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               PD + Y+TIIDGLCK   VD+A +L+ +M  + + P+V+T
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC A    EA  L  EM+ + + PN+ T+N ++D LCK GK+ E+ +LL +M 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + GV+PD   Y+ L+DG+CL G V  AK++F+ M   G
Sbjct: 248 KKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285



 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  ++ ++  L K+K  D    L+  +N+ G+FPD+ T++ LI  FC  G++   F
Sbjct: 146 TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAF 205

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   P+  TYNT+ID LCK+G V ++K L   M  K V
Sbjct: 206 GLLNEMI--------------LKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGV 251

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+VV Y+ ++ G+C   +  +AK++F+ M+  GV P+V ++N+I++ LCK  ++DEA +
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LL  M+   + PD  TY++L+DG C  GR+    +L   M   G
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRG 355



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K        +L   +   G+ PD+  +SIL++ +C +G V     +
Sbjct: 218 PNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQI 277

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++++   PDV ++  +I  +CK                    PD +TY+++IDGLCK
Sbjct: 278 FLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCK 337

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    +L  +M  +    N+VTY S++ G C   + ++A  LF++M ++G+QPN  T
Sbjct: 338 LGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 397

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK G++ +  +L   ++  G   D +TY  ++ G C  G  + A  +   ME
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKME 457

Query: 253 SMGC 256
             GC
Sbjct: 458 DNGC 461



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++I++              +F  +  TG+ PD+Y+++I+IN  CK  RV     +
Sbjct: 253 PDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNL 312

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  +L     PD VT++SLI  +CK                     + +TYN+++DGLCK
Sbjct: 313 LREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCK 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +DKA  LF+KMK++ ++PN  TYT++I G C      + + LF  ++ +G   +V T
Sbjct: 373 NQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWT 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V++  LCK G  DEA ++   M  +G  P+A T+  ++         + A++L   M 
Sbjct: 433 YTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMI 492

Query: 253 SMG 255
           + G
Sbjct: 493 AKG 495



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI++  L K K  D  ++L + +    + PD  T+S LI+  CK+GR++    +
Sbjct: 288 PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +       ++VT+ SL+  +CK                    P+  TY  +IDGLCK
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + K + LF  +  K    +V TYT +I G C    ++EA  +  +M D G  PN VT
Sbjct: 408 GGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVT 467

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           F +I+  L +  + D+A  LL  MI  G+ P
Sbjct: 468 FEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 22  IFDYMLRMHPSPPPVS--SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           I D    MH    P +  ++N +L  L KN++ D  ++LF ++   G+ P+ YT++ LI+
Sbjct: 344 ILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID 403

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
             CK GR+  G  +   +L   +  DV T+T               +I GLCK+G  D+A
Sbjct: 404 GLCKGGRLKKGQALFQHLLVKGYCIDVWTYT--------------VMISGLCKEGMFDEA 449

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             +  KM+D    PN VT+  +IR     ++ ++A++L  EM+ +G+ P
Sbjct: 450 LAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 153/261 (58%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL +F +M+   P P  +  F  +L  +AK K +D V++L K L   G+  DLYT ++
Sbjct: 53  NEALDLFSHMVESRPLPSIID-FTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNL 111

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L+NCFC+  +       LG++++  F PD+ TFTSLI   C                   
Sbjct: 112 LMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMG 171

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD + Y TIID LCK G VD A  LF +M++  ++P+VV YTS++ G C +  W +A 
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   MM + ++P+V+TFN ++D   K GK+ +A  L + MIQ  + P+ FTY +L++G 
Sbjct: 232 LLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGL 291

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+ GR++ A+++F  ME+ GC
Sbjct: 292 CMEGRLDEARQMFYLMETKGC 312



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 131/256 (51%), Gaps = 22/256 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + + M+ M   P  V  +  ++  L KN H D  LSLF ++ + G+ PD+  ++ L
Sbjct: 159 EAMSMVNQMVEMGIKPD-VVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +N  C  GR     ++L  +++    PDV+TF +LI                        
Sbjct: 218 VNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI 277

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  TY ++I+GLC +G +D+A+++F  M+ K   P+VV YTS+I GFC      +A +
Sbjct: 278 APNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMK 337

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM  +G+  N +T+  ++      GK + A  +   M+  GV P+  TYN LL   C
Sbjct: 338 IFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLC 397

Query: 237 LTGRVNHAKELFVSME 252
             G+VN A  +F  M+
Sbjct: 398 YNGKVNKALMIFEDMQ 413



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 60/259 (23%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +++ M++M  +P  + ++  ++  L      D    +F  + + G FPD+  ++ LIN F
Sbjct: 268 LYNEMIQMSIAPN-IFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGF 326

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----VCKPDAI---------------- 121
           CK  +V     +   + +   T + +T+T+LI+    V KP+                  
Sbjct: 327 CKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNI 386

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSV---------------- 161
            TYN ++  LC  G V+KA  +F  M+ +    V PN+ TY  +                
Sbjct: 387 RTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMV 446

Query: 162 -------------------IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                              I+G C A    +A  LF  +  +GV+PNVVT+  ++  L +
Sbjct: 447 FGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFR 506

Query: 203 NGKMDEASSLLDLMIQHGV 221
            G M EA  L   M + GV
Sbjct: 507 EGLMLEAHVLFRKMKEDGV 525



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  ++R   ++  +NEA  LF  M++    P+++ F  +++ + K  K D   +L   + 
Sbjct: 39  YREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQ 98

Query: 218 QHGVRPDAFTYNTLLDGFCLTGR 240
             GV  D +T N L++ FC + +
Sbjct: 99  IMGVSNDLYTCNLLMNCFCQSSQ 121


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 149/293 (50%), Gaps = 57/293 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+  F+ ML M P PPP   FN +L  L  NKHY TV+SLFK+    G+ PDL T SILI
Sbjct: 41  AVASFNLMLLMRP-PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILI 99

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------ 114
           NCFC    ++  F V   IL+  F P+ +T  +LIK                        
Sbjct: 100 NCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQ 159

Query: 115 ------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAKEL 142
                       +CK                    PD + YNTII+ LCK   +  A ++
Sbjct: 160 LDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDV 219

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           + +M  K + P+VVTYT++I GFC      EA  L  EM  + + PNV TFN+++D L K
Sbjct: 220 YSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSK 279

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GKM EA  LL +M++  ++PD FTYN+L+DG+ L   V HAK +F SM   G
Sbjct: 280 EGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG 332



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L  H   P V  +N ++  L KNK       ++  +   G+ PD+ T++ LI+ FC MG 
Sbjct: 188 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGH 247

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVC-KPDAITYNT 125
           +   F +L  +      P+V TF  LI                    K C KPD  TYN+
Sbjct: 248 LKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNS 307

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG      V  AK +F  M  + V P+V  YT++I G C     +EA  LF EM  + 
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKN 367

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P++VT+N ++D LCKN  ++ A +L   M + G++PD ++Y  LLDG C +GR+  AK
Sbjct: 368 MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAK 427

Query: 246 ELFVSMESMG 255
           E+F  + + G
Sbjct: 428 EIFQRLLAKG 437



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L+K         L   +    + PD++T++ LI+ +  +  V H   V
Sbjct: 265 PNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYV 324

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              + +   TPDV  +T++I  +CK                    PD +TYN++IDGLCK
Sbjct: 325 FYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCK 384

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A  L  +MK++ ++P+V +YT ++ G C +    +AK +F  ++ +G   NV  
Sbjct: 385 NHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHA 444

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V+++ LCK G  DEA  L   M   G  PDA T++ ++         + A+++   M 
Sbjct: 445 YTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMI 504

Query: 253 SMG 255
           + G
Sbjct: 505 ARG 507



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y +      P V  +  M+  L K K  D  +SLF+ +    + PD+ T++ LI+  CK 
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN 385

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
             +     +  R+      PDV ++T L              +DGLCK G ++ AKE+F 
Sbjct: 386 HHLERAIALCKRMKEQGIQPDVYSYTIL--------------LDGLCKSGRLEDAKEIFQ 431

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           ++  K    NV  YT +I   C A  ++EA  L  +M D+G  P+ VTF++I+  L +  
Sbjct: 432 RLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKD 491

Query: 205 KMDEASSLLDLMIQHGV 221
           + D+A  +L  MI  G+
Sbjct: 492 ENDKAEKILREMIARGL 508


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 151/260 (58%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL +F  M+   P P  V  F  +L  +AK K +D V+SLF+++   G+ P LYT +I
Sbjct: 64  NEALDLFTRMVHSRPLPSIVD-FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           ++NC C+  +       LG++++  F PD+VTFTSL+   C                   
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ +TY T+I  LCK   ++ A E+F +M D  ++PNVVTY S++ G C    W++A 
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAA 242

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +MM +G+QPNV+TF  ++D   K GK+ EA  L  +MIQ  V PD FTY  L++G 
Sbjct: 243 WLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGL 302

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GR++ A+++F  MES G
Sbjct: 303 CTYGRLDEARQMFYLMESNG 322



 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 22/256 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD ++ M    P V ++  ++ CL KN+H +  + +F ++   G+ P++ T++ L
Sbjct: 170 DALALFDQIVGM-GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           ++  C++GR S    +L  +++    P+V+TFT+LI    KV K                
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TY  +I+GLC  G +D+A+++F  M+     PN VTYT++I GFC +    +  +
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM  +G+  N +T+ V++   C  G+ D A  + + M      PD  TYN LLDG C
Sbjct: 349 IFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLC 408

Query: 237 LTGRVNHAKELFVSME 252
             G V  A  +F  M 
Sbjct: 409 YNGYVEKALMIFKYMR 424



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 22/228 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++  M++M    P V ++  ++  L      D    +F  + S G +P+  T++ L
Sbjct: 275 EAKELYKVMIQM-SVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTL 333

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ FCK  RV  G  +   + +     + +T+T LI                     +  
Sbjct: 334 IHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRA 393

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TYN ++DGLC  G+V+KA  +F  M+ + +  N+VTYT +I+G C      +A  
Sbjct: 394 PPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFD 453

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           LF  +  +G++PNV+T+  ++   C+ G + EA +L   M + G  P+
Sbjct: 454 LFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 35/133 (26%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQ--------------------------------- 184
           Y  ++R   +   +NEA  LF  M+                                   
Sbjct: 50  YRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQ 109

Query: 185 --GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             G+ P + T N++M+ +C++ +   AS  L  M++ G  PD  T+ +LL GFC   R+ 
Sbjct: 110 ILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIE 169

Query: 243 HAKELFVSMESMG 255
            A  LF  +  MG
Sbjct: 170 DALALFDQIVGMG 182


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ +LR + +PP    FN +LG L K+KHY TVL L +++   G+ P+L   +I
Sbjct: 67  DDAVSLFNRLLRRNTTPPAFE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC++G +   F V  +IL+  + PD +TFT+L K                      
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALG 185

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+ + YNTIID +CK   V++A 
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAF 245

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  K + P+VVTY+++I GFC      +A  LF +M+ + ++P+V TFN++++  
Sbjct: 246 DLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAF 305

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK+GKM E  ++ D+M++ G++P+  TYN+L+DG+CL   VN AK +F +M   G
Sbjct: 306 CKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   +FD M++    P  V+  ++M G CL K    +   S+F  +   G+ PD+ ++SI
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVK--EVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +IN FCK+ +      +   + R    PDVVT              Y+++IDGL K G +
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT--------------YSSLIDGLSKSGRI 416

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L  +M D+ V PN+ TY S++   C  +  ++A  L  +  D+G QP++ T++++
Sbjct: 417 SYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSIL 476

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  LC++GK+++A  + + ++  G   D + Y  ++ GFC+ G  N A  L   ME  GC
Sbjct: 477 IKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGC 536



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K K  +    LF  + S G+ PD+ T+S LI+ FC +G++     +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++              ++  KPD  T+N +++  CK G + + K +F  M  + +KP
Sbjct: 283 FNKMI--------------LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY S++ G+C   + N+AK +F  M   GV P++ +++++++  CK  K DEA +L 
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +  + PD  TY++L+DG   +GR+++A +L   M   G
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 22/226 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M +   +P  + S++IM+    K K +D  ++LFK ++   + PD+ T+S 
Sbjct: 347 NKAKSIFNTMAQGGVNPD-IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+   K GR+S+   ++ ++      P++ T+ S++  +CK                  
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+ +I GLC+ G ++ A+++F  +  K    +V  YT +I+GFC    +NEA 
Sbjct: 466 FQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEAL 525

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            L  +M D G  P+  T+ +I+  L K  + D A  LL  MI  G+
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 16/164 (9%)

Query: 28  RMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +MH    PP + ++N +L  L K    D  ++L  +    G  PD+ T+SILI   C+ G
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++     V   +L   +  DV  +T +I+              G C +G  ++A  L  K
Sbjct: 485 KLEDARKVFEDLLVKGYNLDVYAYTIMIQ--------------GFCVEGLFNEALALLSK 530

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           M+D    P+  TY  +I      ++ + A++L  EM+ +G+  N
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 63/128 (49%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K + I+Y++          VD A  LF ++  +N  P    +  ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M  +G++PN+V  N++++  C+ G +  A S+   +++ G  PD  T+ TL  G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLC 166

Query: 237 LTGRVNHA 244
           L G++  A
Sbjct: 167 LKGQIQQA 174



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K N ++Y+S    F   ND ++A  LF  ++ +   P    FN I+  L K+        
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M   G++P+    N L++ FC  G +  A  +F  +  MG
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 161/277 (58%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL  +   DI     N+A+ +F  M++  P P  V  FN +L  + K K YD V+SL K
Sbjct: 54  ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 109

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLYT +I+INCFC   +VS    +LG++L+  + PD VT  SL+   C   
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            KPD + YN IID LCK   V+ A + F +++ K ++PNVVTYT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C ++ W++A RL  +M+ + + PNV+T++ ++D   KNGK+ EA  L + M++ 
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + PD  TY++L++G CL  R++ A ++F  M S GC
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + D M+ +   P  V+ +N ++  L K K  +     FK +   G+ P++ T++ 
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVA-YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 77  LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 101
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PD+VT++SLI                     K C  D ++YNT+I+G CK   V+   
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  + +  N VTY ++I+GF  A D ++A+  F +M   G+ P++ T+N+++  L
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C NG++++A  + + M +  +  D  TY T++ G C TG+V  A  LF S+   G
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M+RM   P  V+ ++ ++  L  +   D    +F  + S G   D+ +++ L
Sbjct: 278 EAKELFEEMVRMSIDPDIVT-YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK  RV  G     ++ R      +V+ T          +TYNT+I G  + G VD
Sbjct: 337 INGFCKAKRVEDGM----KLFREMSQRGLVSNT----------VTYNTLIQGFFQAGDVD 382

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+E F +M    + P++ TY  ++ G C   +  +A  +F +M  + +  ++VT+  ++
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +CK GK++EA SL   +   G++PD  TY T++ G C  G ++  + L+  M+  G
Sbjct: 443 RGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 161/277 (58%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL  +   DI     N+A+ +F  M++  P P  V  FN +L  + K K YD V+SL K
Sbjct: 54  ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 109

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLYT +I+INCFC   +VS    +LG++L+  + PD VT  SL+   C   
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            KPD + YN IID LCK   V+ A + F +++ K ++PNVVTYT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C ++ W++A RL  +M+ + + PNV+T++ ++D   KNGK+ EA  L + M++ 
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + PD  TY++L++G CL  R++ A ++F  M S GC
Sbjct: 290 SIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGC 326



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + D M+ +   P  V+ +N ++  L K K  +     FK +   G+ P++ T++ 
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVA-YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 77  LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 101
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PD+VT++SL+                     K C  D ++YNT+I+G CK   V+   
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  + +  N VTY ++I+GF  A D ++A+  F +M   G+ P++ T+N+++  L
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C NG++++A  + + M +  +  D  TY T++ G C TG+V  A  LF S+   G
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M+RM   P  V+ ++ ++  L  +   D    +F  + S G   D+ +++ L
Sbjct: 278 EAKELFEEMVRMSIDPDIVT-YSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK  RV  G     ++ R      +V+ T          +TYNT+I G  + G VD
Sbjct: 337 INGFCKAKRVEDGM----KLFREMSQRGLVSNT----------VTYNTLIQGFFQAGDVD 382

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+E F +M    + P++ TY  ++ G C   +  +A  +F +M  + +  ++VT+  ++
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +CK GK++EA SL   +   G++PD  TY T++ G C  G ++  + L+  M+  G
Sbjct: 443 RGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 161/277 (58%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL  +   DI     N+A+ +F  M++  P P  V  FN +L  + K K YD V+SL K
Sbjct: 157 ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 212

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLYT +I+INCFC   +VS    +LG++L+  + PD VT  SL+   C   
Sbjct: 213 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 272

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            KPD + YN IID LCK   V+ A + F +++ K ++PNVVTYT
Sbjct: 273 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 332

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C ++ W++A RL  +M+ + + PNV+T++ ++D   KNGK+ EA  L + M++ 
Sbjct: 333 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 392

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + PD  TY++L++G CL  R++ A ++F  M S GC
Sbjct: 393 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 429



 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 95/347 (27%)

Query: 1    ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
            E+L  +G   ++ +  ++A+ +F  M++  P P  +  F+ +L  +AK   +D V+SL +
Sbjct: 664  EKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGE 719

Query: 61   RLNSTGLFPDLYTHSILINCFC----------------KMG------------------- 85
            ++ + G+  + YT+SILINCFC                K+G                   
Sbjct: 720  QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 779

Query: 86   RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITY- 123
            R+S    ++ ++  + + P+ VTF +LI                     K C+PD +TY 
Sbjct: 780  RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 839

Query: 124  ----------------------------------NTIIDGLCKQGFVDKAKELFLKMKDK 149
                                              NTIIDGLCK   +D A  LF +M+ K
Sbjct: 840  VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 899

Query: 150  NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
             ++PNVVTY+S+I   C    W++A RL  +M+++ + P+V TF+ ++D   K GK+ EA
Sbjct: 900  GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 959

Query: 210  SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L D M++  + P   TY++L++GFC+  R++ AK++F  M S  C
Sbjct: 960  EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 56/278 (20%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--- 90
            P V  +N ++  L K KH D  L+LFK + + G+ P++ T+S LI+C C  GR S     
Sbjct: 868  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927

Query: 91   ----------------------FVVLGRIL----------RSCFTPDVVTFTSLI----- 113
                                  FV  G+++          +    P +VT++SLI     
Sbjct: 928  LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 114  ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                            K C PD +TYNT+I G CK   V++  E+F +M  + +  N VT
Sbjct: 988  HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 1047

Query: 158  YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
            Y  +I+G   A D + A+ +F EM+  GV PN++T+N ++D LCKNGK+++A  + + + 
Sbjct: 1048 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 1107

Query: 218  QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  + P  +TYN +++G C  G+V    +LF ++   G
Sbjct: 1108 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 1145



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + D M+ +   P  V+ +N ++  L K K  +     FK +   G+ P++ T++ 
Sbjct: 275 SDAVSLVDKMVEIGYKPDIVA-YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 333

Query: 77  LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 101
           L+N  C   R S                           FV  G++L          R  
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 393

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PD+VT++SLI                     K C  D ++YNT+I+G CK   V+   
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  + +  N VTY ++I+GF  A D ++A+  F +M   G+ P++ T+N+++  L
Sbjct: 454 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 513

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C NG++++A  + + M +  +  D  TY T++ G C TG+V  A  LF S+   G
Sbjct: 514 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 568



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            EA  ++D M++     P + +++ ++     +   D    +F+ + S   FPD+ T++ L
Sbjct: 958  EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
            I  FCK  RV  G  V   + +     + VT+  LI+                       
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 117  KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             P+ +TYNT++DGLCK G ++KA  +F  ++   ++P + TY  +I G C A    +   
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 177  LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            LF  +  +GV+P+VV +N ++   C+ G  +EA +L   M + G  P++  YNTL+    
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 237  LTGRVNHAKELFVSMESMG 255
              G    + EL   M S G
Sbjct: 1197 RDGDREASAELIKEMRSCG 1215



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M+RM   P  V+ ++ ++  L  +   D    +F  + S G   D+ +++ L
Sbjct: 381 EAKELFEEMVRMSIDPDIVT-YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK  RV  G     ++ R      +V+ T          +TYNT+I G  + G VD
Sbjct: 440 INGFCKAKRVEDGM----KLFREMSQRGLVSNT----------VTYNTLIQGFFQAGDVD 485

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+E F +M    + P++ TY  ++ G C   +  +A  +F +M  + +  ++VT+  ++
Sbjct: 486 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 545

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +CK GK++EA SL   +   G++PD  TY T++ G C  G ++  + L+  M+  G
Sbjct: 546 RGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 18/201 (8%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++NI++  L +    D    +FK + S G+ P++ T++ L++  CK G++    VV   +
Sbjct: 1047 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 1106

Query: 98   LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
             RS   P + T              YN +I+G+CK G V+   +LF  +  K VKP+VV 
Sbjct: 1107 QRSKMEPTIYT--------------YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 1152

Query: 158  YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
            Y ++I GFC      EA  LF EM + G  PN   +N ++    ++G  + ++ L+  M 
Sbjct: 1153 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 1212

Query: 218  QHGVRPDAFTY----NTLLDG 234
              G   DA T     N L DG
Sbjct: 1213 SCGFAGDASTIGLVTNMLHDG 1233


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 155/295 (52%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +L   AK KHY T +SL  RL   G+ PDL T +I
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK                      
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    PD + YNTIID +CK   V +A 
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAY 219

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  +VVTY ++I GFC      EA  L  EM+ + + PNV T+N+++D L
Sbjct: 220 GLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA S+L +M++  V+PD  TY+TL+DG+ L   V  A+ +F +M  MG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---- 117
           P++YT++IL++  CK G+V     VL  +L++C  PDV+T+++L+       +V K    
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD  TY  +I+G CK   VD+A  LF +M  KN+ P +VTY+S+I G C 
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +   +    L  EM D+G   +V+T++ ++D LCKNG +D A +L + M    +RP+ FT
Sbjct: 387 SGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LLDG C  GR+  A+E+F  + + G
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKG 474



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 134/238 (56%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M  M  +P  V ++ I++    KNK  D  L+LFK ++   + P + T+S L
Sbjct: 322 KAQHVFNAMSLMGVTPD-VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+S+ + ++   +R    P              D ITY+++IDGLCK G +D
Sbjct: 381 IDGLCKSGRISYVWDLIDE-MRDRGQP-------------ADVITYSSLIDGLCKNGHLD 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF KMKD+ ++PN+ T+T ++ G C      +A+ +F +++ +G   NV T+NV++
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  CK G ++EA ++L  M  +G  P+AFT+ T++         + A++L   M + G
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGC-----LAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           EA  +   ML+    P  ++   +M G      + K +H    +SL       G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM------GVTPDVH 340

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++ILIN FCK   V     +   + +    P +VT++SLI              DGLCK
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI--------------DGLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    +L  +M+D+    +V+TY+S+I G C     + A  LF +M DQ ++PN+ T
Sbjct: 387 SGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F +++D LCK G++ +A  +   ++  G   + +TYN +++G C  G +  A  +   ME
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506

Query: 253 SMGC 256
             GC
Sbjct: 507 DNGC 510



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  +N ++  + K +       LF  +   G+  D+ T++ LI  FC +G++    
Sbjct: 195 TKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAI 254

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   P+  TYN ++D LCK+G V +AK +   M    V
Sbjct: 255 GLLNEMV--------------LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+V+TY++++ G+    +  +A+ +F  M   GV P+V T+ ++++  CKN  +DEA +
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALN 360

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M Q  + P   TY++L+DG C +GR+++  +L   M   G
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRG 404



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 14/160 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    P  V +++ ++  L KN H D  ++LF ++    + P+++T +IL++  CK GR
Sbjct: 400 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGR 459

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     V   +L   +  +V               TYN +I+G CKQG +++A  +  KM
Sbjct: 460 LKDAQEVFQDLLTKGYHLNVY--------------TYNVMINGHCKQGLLEEALTMLSKM 505

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D    PN  T+ ++I      ++ ++A++L  +M+ +G+
Sbjct: 506 EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G++    S+L  +++ G  PD  T NTL+ G CL G+V  A
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 151/298 (50%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL  F+ ML M P PP V  F  +L  +A  KHY TVLSL K+++S G+  D+YT 
Sbjct: 54  TIDEALSSFNRMLHMQP-PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTL 112

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
           +I+IN FC + RV  GF VL +I +    PD  TFT+LI+                    
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 115 ----------------VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
                           +CK                    P+ ITYNTIID L K   V++
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F +M  K + PNV TY S+I G C  ++W     L  EM+D  + PNVV F  ++D
Sbjct: 233 ALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVD 292

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G +  A  ++D+MIQ GV PD  TY  L+DG CL   ++ A ++F +M   GC
Sbjct: 293 ALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGC 350



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 140/260 (53%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF  M+    SP  VS++N ++  L K   +  V +L   +  + + P++   + 
Sbjct: 231 NEALNIFSEMIAKGISPN-VSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTT 289

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G V+    V+  +++    PDVVT+T+L+                     K 
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ I+Y+T+I+G CK   +DKA  LF +M  + + PN+VTY ++I G C+     +A 
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  G  P++VT+ +++D LCK   +D+A ++L  +    + PD  +YN ++DG 
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +  A +LF S+ S G
Sbjct: 470 CRVGELEAAGDLFSSLSSKG 489



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+R     P V S++ ++    K +  D  + LF+ +    L P++ T++ 
Sbjct: 336 DEADKVFDTMVR-KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  C +GR+     +   ++ S   PD+VT+  L+  +CK                  
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +YN +IDG+C+ G ++ A +LF  +  K + P+V TYT +I G C      EA 
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM   G  P+  T+N+I     +N +   A  LL  M+  G   DA T   +++  
Sbjct: 515 KLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEML 574

Query: 236 CLTGRVNHAKELF 248
              G     K++ 
Sbjct: 575 SDDGLDQSVKQIL 587



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 15/201 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  M+     P  V+ + I+L  L K +H D  +++ K +  + L PD+ +++I+
Sbjct: 407 DAIALFHEMVASGQIPDLVT-YRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIV 465

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  C++G +       G +  S  +          K   PD  TY  +I+GLC QG + 
Sbjct: 466 IDGMCRVGELEAA----GDLFSSLSS----------KGLHPDVWTYTIMINGLCLQGLLA 511

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M      P+  TY  + RGF   N+   A +L  EM+ +G   +  T  +I+
Sbjct: 512 EATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIV 571

Query: 198 DELCKNGKMDEASSLLDLMIQ 218
           + L  +G       +L   +Q
Sbjct: 572 EMLSDDGLDQSVKQILHEFVQ 592


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 158/295 (53%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +L   AK KHY T +SL  RL   G+ PDL T +I
Sbjct: 41  DDAVSQFNRMLCMRHTPPIIQ-FNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC MG+++ GF VL +IL+  + P  +TFT+LIK                      
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    P+   YNTIID LCK   V +A 
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  +VVTYT++I GFC A+   EA  L  EM+ + + PNV T+N+++D L
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA ++L +M++  V+PD  TY+TL+DG+ L   +  A+ +F +M  MG
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMG 334



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  +F  M     S   V+   ++ G C+A        + L   +    + P++YT++
Sbjct: 216 SEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK--LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
           IL++  CK G+V     VL  +L++C  PDV+T+++L+                      
Sbjct: 274 ILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  +Y  +I+G CK   VD+A  LF +M  KN+ P +VTY+S+I G C +   +  
Sbjct: 334 GVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYV 393

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM D+G+  NV+T+N ++D LCKNG +D A +L + M   G+RP +FT+  LLDG
Sbjct: 394 WDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDG 453

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  GR+  A+E F  + + G
Sbjct: 454 LCKGGRLKDAQEAFQDLLTKG 474



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M  M  +P  V S+ I++    KNK  D  L+LFK ++   + P + T+S L
Sbjct: 322 KAQHVFNAMSLMGVTPD-VHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+S+ + ++   +R    P              + ITYN++IDGLCK G +D
Sbjct: 381 IDGLCKSGRISYVWDLIDE-MRDRGIP-------------ANVITYNSLIDGLCKNGHLD 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF KMKD+ ++P   T+T ++ G C      +A+  F +++ +G   +V  +NV++
Sbjct: 427 RAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMI 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  CK G ++EA ++L  M ++G  P+A T++ +++        + A++L   M   G
Sbjct: 487 NGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 58/109 (53%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G++    S+L  +++ G +P   T+ TL+ G CL G+VN A
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKA 148


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 159/277 (57%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL  +   DI     ++A+ +F  M++  P P  V  FN +L  + K K YD V+SL K
Sbjct: 54  ERLSKTRLRDIKL---HDAINLFREMVKTRPFPSIVD-FNRLLSAIVKMKKYDVVISLGK 109

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-- 117
           ++   G+  DLYT +I+INCFC   +VS    VLG++L+  + PD VT  SL+   C+  
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRN 169

Query: 118 ------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                             PD + YN IID LCK   V+ A + F ++  K ++PNVVTYT
Sbjct: 170 RVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYT 229

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C +  WN+A RL  +M+ + + PNV+T++ ++D   KNGK+ EA  + + M++ 
Sbjct: 230 ALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRM 289

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + PD  TY++L++G CL  R++ A ++F  M S GC
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL  F  + R     P V ++  ++  L  +  ++    L + +    + P++ T+S 
Sbjct: 207 NDALDFFKEIGR-KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSA 265

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ F K G+V     +   ++R    PD+VT++SLI                     K 
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD ++YNT+I+G CK   V+   +LF KM  + +  N VTY ++I+GF    D ++A+
Sbjct: 326 CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQ 385

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F +M   GV P++ T+N+++  LC NG +++A  + + M +  +  D  TY T++ G 
Sbjct: 386 EFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGM 445

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C TG+V  A  LF S+   G
Sbjct: 446 CKTGKVEDAWGLFCSLSLKG 465



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF+ M+RM   P  V+ ++ ++  L  +   D    +F  + S G FPD+ +++ L
Sbjct: 278 EAKEIFEEMVRMSIDPDIVT-YSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK  RV  G     ++ R      +V  T          +TYNT+I G  + G VD
Sbjct: 337 INGFCKAKRVEDGM----KLFRKMSQRGLVNNT----------VTYNTLIQGFFQVGDVD 382

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+E F +M    V P++ TY  ++ G C      +A  +F +M    +  ++VT+  ++
Sbjct: 383 KAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVI 442

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +CK GK+++A  L   +   G++PD  TY T++ G C  G  +  + L+  M+  G
Sbjct: 443 QGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 22/194 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P V S+N ++    K K  +  + LF++++  GL  +  T++ 
Sbjct: 312 DEANQMFDLMVS-KGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           LI  F ++G V        ++     +PD+ T+  L+  +C                   
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D +TY T+I G+CK G V+ A  LF  +  K +KP++VTYT+++ G C     +E +
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490

Query: 176 RLFIEMMDQGVQPN 189
            L+ +M  +G+  N
Sbjct: 491 ALYTKMKQEGLMKN 504


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 156/304 (51%), Gaps = 63/304 (20%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF------ 68
           T +EAL  F+ M+ M  +P  +S FN + G LAK K Y  V+S+  R+NS GL       
Sbjct: 87  TLHEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISL 145

Query: 69  -----------------------------PDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
                                        P+  T + L+   C  G++     V   +  
Sbjct: 146 NILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGV 205

Query: 100 SCFTPDVVTFTSLIKV---------------------------CKPDAITYNTIIDGLCK 132
               P  +T   LI                             CKP  ++Y+ IID LCK
Sbjct: 206 FDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCK 265

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V++AKE F++MK+K + PNVVTYTS++ G C A++W EAKRLFIEM+D G+ P+VVT
Sbjct: 266 DGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVT 325

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+V++  LCK GK+ EAS L DLM+Q  V P   TYN L++G+CL G V+  K++F+SM 
Sbjct: 326 FSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMV 385

Query: 253 SMGC 256
           +  C
Sbjct: 386 NKRC 389



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 84/307 (27%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++  L K+   +     F  +   G+FP++ T++ L++  C          +
Sbjct: 251 PTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRL 310

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++     PDVVTF+ LI  +CK                    P   TYN +I+G C 
Sbjct: 311 FIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCL 370

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+ K++FL M +K  + +  +Y+ +++ +C  ++ + A  L+ EMMD+G+QP V+T
Sbjct: 371 AGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVIT 430

Query: 193 F----------------------------NVIMDELCKNG-------------------- 204
           +                            NV +D LCKNG                    
Sbjct: 431 YSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASN 490

Query: 205 ---------------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
                          K++ A  L + +    ++PD  TY  ++ G C  G+   A +LF+
Sbjct: 491 VAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFL 550

Query: 250 SMESMGC 256
            ME  GC
Sbjct: 551 EMEEKGC 557



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M++ +  P    ++NI++         D    +F  + +     D  ++SIL
Sbjct: 341 EASGLFDLMVQRYVEPS-TRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSIL 399

Query: 78  INCFCKMGRVSHGFVVLGR-ILRSCFTPDVVTFTSLIKVCKP-----------DAITY-- 123
           +  +CK   V HG ++L R ++     P V+T++ +    K            D+I+Y  
Sbjct: 400 MKAYCKDSEV-HGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSI 458

Query: 124 -NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
            N  +DGLCK G V +A ++F  +++     NV  + S+I G C +     A  LF  + 
Sbjct: 459 YNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLC 518

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++ +QP+VVT+ +++  LCK G+  +A  L   M + G  P+  T+NTL+ G CL     
Sbjct: 519 NEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERP 578

Query: 243 HAKELFVSMES 253
              EL   M +
Sbjct: 579 KIVELLHKMAA 589



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 16/211 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S++I++    K+      + L++ +   G+ P + T+S + +     G +    +VL  I
Sbjct: 395 SYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSI 454

Query: 98  LRS-------------CFTPDVVTFTSLIKVCK--PDAITYNTIIDGLCKQGFVDKAKEL 142
             S             C +  +  F  L + CK   +   +N++I+G+C+   ++ A EL
Sbjct: 455 SYSIYNVYLDGLCKNGCVSEALDVFYGL-ENCKFASNVAIFNSLINGMCRSEKLEIAWEL 513

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F ++ ++ ++P+VVTYT +I G C      +A  LF+EM ++G  PNVVTFN +M  LC 
Sbjct: 514 FNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCL 573

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           N +  +   LL  M    + PDA T   ++D
Sbjct: 574 NSERPKIVELLHKMAARKLSPDASTLLIVMD 604



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S +N+ L  L KN      L +F  L +     ++   + LIN  C+  ++   + +  R
Sbjct: 457 SIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNR 516

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +      PDVVT+T               +I GLCK G   KA +LFL+M++K   PNVV
Sbjct: 517 LCNEALQPDVVTYT--------------IMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVV 562

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           T+ +++RG C  ++  +   L  +M  + + P+  T  ++MD L K+    E  +LL
Sbjct: 563 TFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLL 619



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 131 CKQG--FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           CK G   + +A   F +M      P +  + ++         +     +   M   G+  
Sbjct: 81  CKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLK 140

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N ++ N++++ LC   ++ E   +  ++++ G RP+  T+  L+ G CL G++  A  +F
Sbjct: 141 NFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVF 200

Query: 249 VSMESMGC 256
             M    C
Sbjct: 201 KIMGVFDC 208


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 158/296 (53%), Gaps = 59/296 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ +L + P PP V  FN +LG L K KHY TV+SL K+++ + + P++YT +IL
Sbjct: 52  DAVASFNQLLGIRPLPP-VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTIL 110

Query: 78  INCFCKMGR--VSHGFVVLGRIL-----------------------------------RS 100
           INC C   R  V   F  LG++                                    + 
Sbjct: 111 INCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKM 170

Query: 101 CFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKA 139
            F P ++T+T++I                     K CKPD + YNT+ID LCK    ++A
Sbjct: 171 GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEA 230

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
              F +M D+ + PNVVTY+S++ GFC     NEA  LF +M+ + V PN VTF +++D 
Sbjct: 231 MYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDG 290

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK G + EA  + ++M ++GV PDA+TY+ L+DG+CL  +++ A++LF  M   G
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 140/259 (54%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD + +M  +P  ++   I+ G L K  H    L L K++   G  PD+  ++ +
Sbjct: 159 DAVKLFDEIGKMGFAPSLITYTTIIKG-LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTV 217

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK  R +        ++     P+VVT++S++                     +  
Sbjct: 218 IDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNV 277

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T+  ++DGLCK+G + +A+ +F  M +  V+P+  TY++++ G+C  +  +EA++
Sbjct: 278 MPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQK 337

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G  P+V  +N++++  CK+ +++EA +LL  M    + PD  TY+TL+ GFC
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFC 397

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A++LF  M S G
Sbjct: 398 QAGRPQVAQKLFKEMCSYG 416



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++  +  +  F  +   G+ P++ T+S +++ FC +G+++    +
Sbjct: 209 PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSL 268

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++     P+ VTFT L+  +CK                    PDA TY+ ++DG C 
Sbjct: 269 FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCL 328

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +D+A++LF  M  K   P+V  Y  +I G C +   NEAK L  EM D+ + P+ VT
Sbjct: 329 QSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVT 388

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ +M   C+ G+   A  L   M  +G+ PD+ TY+ LLDG C  G ++ A  L  +M+
Sbjct: 389 YSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQ 448



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+  F  M+     PP V +++ +L         +   SLFK++    + P+  T +I
Sbjct: 228 NEAMYFFSEMVD-QGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTI 286

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G +     V   +  +   PD  T+++L+                     K 
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    YN +I+G CK   +++AK L  +M D+++ P+ VTY+++++GFC A     A+
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQ 406

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM   G+ P+ +T+++++D LCK+G +DEA  LL  M +  + P    YN L+ G 
Sbjct: 407 KLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGM 466

Query: 236 CLTGRVNHAKELFVSM 251
           C  G++  A+ELF ++
Sbjct: 467 CNFGKLEAARELFSNL 482



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 126/260 (48%), Gaps = 24/260 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F+ M      P   +   +M G CL      D    LF  +   G  P +  ++I
Sbjct: 299 EARRVFEMMTENGVEPDAYTYSALMDGYCL--QSQMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN  CK  R++    +L  +     TPD VT+++L++  C+                  
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD+ITY+ ++DGLCK G +D+A  L   M++  ++P++  Y  +I+G C       A+
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAR 476

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +  +G+QP+VVT+ V++  L K G  +EA  +   M+ +G  P++ TYN  + GF
Sbjct: 477 ELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGF 536

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G  ++A  L   M   G
Sbjct: 537 LRNGDPSNAVRLIEEMVGRG 556



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  M+  +  P  V+ F I++  L K         +F+ +   G+ PD YT+S 
Sbjct: 263 NEATSLFKQMIGRNVMPNTVT-FTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSA 321

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           L++ +C   ++     +   ++   F P V  +  LI   CK                  
Sbjct: 322 LMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD 381

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TY+T++ G C+ G    A++LF +M    + P+ +TY+ ++ G C     +EA 
Sbjct: 382 LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAF 441

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M +  ++P++  +N+++  +C  GK++ A  L   +   G++P   TY  ++ G 
Sbjct: 442 RLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGL 501

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G  N A E+F  M   GC
Sbjct: 502 LKEGLSNEACEMFRKMVVNGC 522



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 103/218 (47%), Gaps = 17/218 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA  +   M     +P  V+   +M G C A          LFK + S GL PD  T+S
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQ--VAQKLFKEMCSYGLLPDSITYS 425

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL++  CK G +   F +L  +  S   P +                YN +I G+C  G 
Sbjct: 426 ILLDGLCKHGHLDEAFRLLKAMQESKIEPHICI--------------YNILIQGMCNFGK 471

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A+ELF  +  K ++P+VVTYT +I G       NEA  +F +M+  G  PN  T+NV
Sbjct: 472 LEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNV 531

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            +    +NG    A  L++ M+  G   D+ T+  LLD
Sbjct: 532 AIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 106 VVTFTSLIKVCK-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           V +F  L+ +   P  + +N ++  L K+        L  +M   N++PNV T T +I  
Sbjct: 54  VASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINC 113

Query: 165 FCYAN--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            C++N    + A     +M   G+QP  VTF  +++ LC   K+ +A  L D + + G  
Sbjct: 114 LCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFA 173

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           P   TY T++ G C  G   +A +L   ME  GC
Sbjct: 174 PSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGC 207


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 155/266 (58%), Gaps = 22/266 (8%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           +++   E + +F  M++  P P  V  F+ +L  +AK+K+YD V+SLF  +   G+  DL
Sbjct: 46  SSMNLEEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDL 104

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------- 116
           Y+++I+INC C+  R      V+G++++  + PDVVT +SLI   C              
Sbjct: 105 YSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK 164

Query: 117 ------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                 +PD + YNTIIDG CK G V+ A ELF +M+   V+ + VTY S++ G C +  
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           W++A RL  +M+ + + PNV+TF  ++D   K GK  EA  L + M +  V PD FTYN+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           L++G C+ GRV+ AK++   M + GC
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGC 310



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 24/248 (9%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M    P V +F  ++    K   +   + L++ +    + PD++T++ LIN  C  GRV 
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTII 127
               +L  ++     PDVVT+ +LI   CK                     D ITYNTII
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            G  + G  D A+E+F +M   + +PN+ TY+ ++ G C      +A  LF  M    ++
Sbjct: 357 QGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 413

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++ T+N+++  +CK G +++A  L   +   G++PD  +Y T++ GFC   + + +  L
Sbjct: 414 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLL 473

Query: 248 FVSMESMG 255
           +  M+  G
Sbjct: 474 YRKMQEDG 481



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 19/225 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +++ M R     P V ++N ++  L  +   D    +   + + G  PD+ T++ 
Sbjct: 261 SEAMKLYEEMTR-RCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----VCKPDAI----------- 121
           LIN FCK  RV  G  +   + +     D +T+ ++I+      +PDA            
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 379

Query: 122 ---TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
              TY+ ++ GLC    V+KA  LF  M+   ++ ++ TY  VI G C   +  +A  LF
Sbjct: 380 NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLF 439

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             +  +G++P+VV++  ++   C+  + D++  L   M + G+ P
Sbjct: 440 RSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 151/298 (50%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T + A+  F+ MLRM P PP    FN +L  +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
            ILIN FC + RV   F VL +IL+                                   
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159

Query: 100 SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDK 138
             F PDVVT+ +LI                     K C+P+   YNTIID LCK   V +
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  K + P++ TY S+I   C   +W     L  EM+D  + P+VV+FN ++D
Sbjct: 220 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK GK+ EA  ++D MIQ GV P+  TY  L+DG CL   ++ A ++F +M   GC
Sbjct: 280 ALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 33/237 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++      +LF  + + G+ PD++T++ LI+  C +    H   +
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ S   PDVV+F              NT++D LCK+G V +A ++  KM  + V+P
Sbjct: 259 LNEMVDSKIMPDVVSF--------------NTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-------- 205
           NVVTYT+++ G C  ++ +EA ++F  M+ +G  PNV+++N +++  CK  +        
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYT 364

Query: 206 -----------MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
                      MDEA  + D M+  G  P+  +YNTL++G+C   R++ A  LF  M
Sbjct: 365 XLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEM 421



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 13/254 (5%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTG 66
           EG +T     EA  + D M++    P  V+   +M G CL      D  + +F  +   G
Sbjct: 284 EGKVT-----EAHDVVDKMIQRGVEPNVVTYTALMDGHCLLS--EMDEAVKVFDTMVCKG 336

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC----FTPDVVTFTSLI-KVCKPDAI 121
             P++ +++ LIN +CK+ R+         +   C        V  F +++ K C P+ I
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVI 396

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YNT+I+G CK   +DKA  LF +M  + + P+ VTY+++I G C+     +A  LF EM
Sbjct: 397 SYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 456

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +     PN+VT+ +++D LCKN  + EA +LL  +    + PD    N  +DG C  G +
Sbjct: 457 VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGEL 516

Query: 242 NHAKELFVSMESMG 255
             A++LF ++ S G
Sbjct: 517 EAARDLFSNLSSKG 530



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 41/279 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK------HY-------------DTVLS 57
           +EA+ +FD M+      P V S+N ++    K +      HY             D  + 
Sbjct: 323 DEAVKVFDTMV-CKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVK 381

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
           +F  +   G  P++ +++ LIN +CK+ R+     + G + R    PD VT+++LI  +C
Sbjct: 382 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441

Query: 117 K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                                P+ +TY  ++D LCK  ++ +A  L   ++  N+ P++ 
Sbjct: 442 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 501

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                I G C A +   A+ LF  +  +G+QP+V T++++++ LC+ G +DEAS L   M
Sbjct: 502 VNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREM 561

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++G   +   YNT+  GF      + A +L   M + G
Sbjct: 562 DENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 600



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 22/232 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S+N ++    K +  D  + LF  +    L PD  T+S 
Sbjct: 377 DEAVKVFDTMV-CKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 435

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  C + R+     +   ++     P++VT+  L+  +CK                  
Sbjct: 436 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 495

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD    N  IDG+C+ G ++ A++LF  +  K ++P+V TY+ +I G C     +EA 
Sbjct: 496 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 555

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +LF EM + G   N   +N I     +N +   A  LL  M+  G   DA T
Sbjct: 556 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 607



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+     P  V+ + I+L  L KN++    ++L K +  + L PD+  ++I
Sbjct: 447 QDAIALFHEMVACSQIPNLVT-YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 505

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I+  C+ G +           R  F+      +S  K  +PD  TY+ +I+GLC++G +
Sbjct: 506 AIDGMCRAGELEAA--------RDLFS----NLSS--KGLQPDVWTYSIMINGLCRRGLL 551

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF +M +     N   Y ++ RGF   N+ + A +L  EM+ +G   +  T  + 
Sbjct: 552 DEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLF 611

Query: 197 MDELCKNG 204
           +  L  +G
Sbjct: 612 VKMLSDDG 619


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 154/288 (53%), Gaps = 57/288 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F++++ M P P  V  FN ++G + K KH    +SL K++   G+ P ++T SI
Sbjct: 66  DDAVTLFNHLINMQPLPS-VIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
            INC+C +G +   F VLG +L+  + P+ +T T+++K                      
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+ + YN IID  CK     KA+
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKAR 244

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +L+LK+ D  + P+++TYTS+IRGFC    W E K+L  EM+++ + PNV TFNV++D  
Sbjct: 245 DLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAF 304

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           C+ GKM EA  + +LM++ G +PD  T+NTL+ G CL G V  A++LF
Sbjct: 305 CRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLF 352



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 29/245 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKN-----KHYDTVLSLFKRLNSTGLFPD 70
           EA  +F+ M++     P + +FN ++   CL  N     K +DTV   F+R    G+ PD
Sbjct: 312 EAQGMFNLMVK-RGQQPDIVTFNTLISGHCLHGNVLEARKLFDTV---FER----GILPD 363

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           +++++ILI  +CK  R+     +   +       D+V ++SLI              DGL
Sbjct: 364 VWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLI--------------DGL 409

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G +  A ELF  + +    PNV+TY  +I  FC   D +    LF  M  +G+ P V
Sbjct: 410 CKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTV 469

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T+N++++  CK+ ++ EA +LL +M    + PD+ TYN+L DG C +GR++ A ELF  
Sbjct: 470 LTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKV 529

Query: 251 MESMG 255
           M   G
Sbjct: 530 MHVGG 534



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 21/190 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ I++    K K  D  +SLF  +    +  D+  +S LI+  CK GR+S+ + +
Sbjct: 362 PDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWEL 421

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              I      P+V+T+  LI   CK                    P  +TYN +I+G CK
Sbjct: 422 FSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCK 481

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L   M+ KN+ P+ +TY S+  G C +   ++A  LF  M   G   +V T
Sbjct: 482 SKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVAT 541

Query: 193 FNVIMDELCK 202
           +NV++D  CK
Sbjct: 542 YNVLLDAFCK 551



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++NI++    K +  D  + LFK +   GL P + T++ILIN +CK  R+     
Sbjct: 431 PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMN 490

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +++S             K   PD+ITYN++ DGLCK G +  A ELF  M      
Sbjct: 491 LLS-VMQS-------------KNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPP 536

Query: 153 PNVVTYTSVIRGFCYAND 170
            +V TY  ++  FC A D
Sbjct: 537 VDVATYNVLLDAFCKAQD 554



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I +NTII  + K      A  L  +M  K V P++ T +  I  +C+  +   A  +
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              ++ +G QPN +T   +M  LC NG++ +A    D +   G+  D   Y TL++G C 
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCK 201

Query: 238 TGRVNHAKELFVSMES 253
            GR   A +L   ME 
Sbjct: 202 IGRSIDAFQLLQEMEG 217



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF  + +    P+V+ + ++I           A  L  +M+ +GV P++ T ++
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  C  G+M  A S+L ++++ G +P+  T  T++ G C+ G V  A +   ++ + G
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  ++A  LF  +++    P+V+ FN I+  + K      A SLL  M+  GV P  FT 
Sbjct: 63  NGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTL 122

Query: 229 NTLLDGFCLTGRVNHA 244
           +  ++ +C  G +  A
Sbjct: 123 SIWINCYCHLGEMGFA 138


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 156/295 (52%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +L   AK KHY T +SL  RL   G+ PDL T +I
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK                      
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    P+ + Y+TIID LCK   V +A 
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  +VVTY+++I GFC      EA  L  EM+ + + PNV T+N+++D L
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA S+L +M++  V+PD  TY+TL+DG+ L   V  A+ +F +M  MG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 114/202 (56%), Gaps = 14/202 (6%)

Query: 50   KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
            KHY T +SL  RL   G+ PDL+T +ILINCFC MG+++  F +L +IL+  + PD +TF
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 110  TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
            T              T+I+GLC +G V+KA     K+  +  + N V+Y ++I G C   
Sbjct: 1000 T--------------TLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIG 1045

Query: 170  DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            D   A +L  ++  +  +P+VV +N I+D LCK+  + +A  L   M   G+  D  TYN
Sbjct: 1046 DTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYN 1105

Query: 230  TLLDGFCLTGRVNHAKELFVSM 251
            TL+ GFC+ G++  A  L   M
Sbjct: 1106 TLIYGFCIVGKLKEAIGLLNKM 1127



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 25/244 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGC-----LAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           EA  +   ML+    P  ++   +M G      + K +H    +SL       G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM------GVTPDVH 340

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++ILIN FCK   V     +   + +    P +VT++SLI              DGLCK
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI--------------DGLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    +L  +M D+    NV+TY+S+I G C     + A  LF +M DQG++PN  T
Sbjct: 387 SGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F +++D LCK G++ +A  +   ++  G   + +TYN ++DG C  G +  A  +   ME
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKME 506

Query: 253 SMGC 256
             GC
Sbjct: 507 DNGC 510



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 15/215 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M  M  +P  V ++ I++    KNK  D  L+LFK ++   + P + T+S L
Sbjct: 322 KAQHVFNAMSLMGVTPD-VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+ + + ++  +       +V+T++SLI              DGLCK G +D
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLI--------------DGLCKNGHLD 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF KMKD+ ++PN  T+T ++ G C      +A+ +F +++ +G   NV T+NV++
Sbjct: 427 RAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           D  CK G ++EA ++L  M  +G  PDA T+  ++
Sbjct: 487 DGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  ++ ++  L K +       LF  +   G+  D+ T+S LI  FC  G++    
Sbjct: 195 TKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   P+  TYN ++D LCK+G V +AK +   M    V
Sbjct: 255 GLLNEMV--------------LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+V+TY++++ G+    +  +A+ +F  M   GV P+V T+ ++++  CKN  +DEA +
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALN 360

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M Q  + P   TY++L+DG C +GR+ +  +L   M   G
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRG 404



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G++    S+L  +++ G  PD  T NTL+ G CL G+V  A
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 22  IFDYMLRMHP--SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           ++D +  MH    P  V +++ ++  L KN H D  ++LF ++   G+ P+ +T +IL++
Sbjct: 393 VWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLD 452

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKP 118
             CK GR+     V   +L   +  +V T+  +I                       C P
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 119 DAITYNTIIDGLCKQ----GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           DA+T+  II  L K+    G V   K+++  ++ K  +   +T+       C+++D  E
Sbjct: 513 DAVTFEIIIIALFKKDENGGNVGFDKKVWEIVEHKKGETPSITFK------CHSHDGEE 565


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 150/298 (50%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T + A+  F+ MLRM P PP    FN +L  +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
            ILIN FC + RV   F VL +IL+    PD  TFT+LI+                    
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIG 159

Query: 115 ----------------VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
                           +CK                    P+   YNTIID LCK   V +
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  K + P++ TY S+I   C   +W     L  EM+D  + P+VV+FN ++D
Sbjct: 220 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK GK+ EA  ++D MIQ GV P+  TY  L+DG CL   ++ A ++F +M   GC
Sbjct: 280 ALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 123/218 (56%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++      +LF  + + G+ PD++T++ LI+  C +    H   +
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ S   PDVV+F              NT++D LCK+G V +A ++  KM  + V+P
Sbjct: 259 LNEMVDSKIMPDVVSF--------------NTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTYT+++ G C  ++ +EA ++F  M+ +G  PNV+++N +++  CK  ++D+A  L 
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 364

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             M +  + PD  TY+TL+ G C   R+  A  LF  M
Sbjct: 365 GEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 402



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++N ++  L     +  V +L   +  + + PD+ + + +
Sbjct: 219 EAFNLFSEMVTKGISPD-IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G+V+    V+ ++++    P+VVT+T+L+                     K C
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ I+YNT+I+G CK   +DKA  LF +M  + + P+ VTY+++I G C+     +A  
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 397

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+     PN+VT+ +++D LCKN  + EA +LL  +    + PD    N  +DG C
Sbjct: 398 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 457

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 458 RAGELEAARDLFSNLSSKG 476



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 29/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTG 66
           EG +T     EA  + D M++    P  V+   +M G CL      D  + +F  +   G
Sbjct: 284 EGKVT-----EAHDVVDKMIQRGVEPNVVTYTALMDGHCLLS--EMDEAVKVFDTMVCKG 336

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------- 117
             P++ +++ LIN +CK+ R+     + G + R    PD VT+++LI  +C         
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAI 396

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       P+ +TY  ++D LCK  ++ +A  L   ++  N+ P++      I G 
Sbjct: 397 ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGM 456

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A +   A+ LF  +  +G+QP+V T++++++ LC+ G +DEAS L   M ++G   + 
Sbjct: 457 CRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNG 516

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             YNT+  GF      + A +L   M + G
Sbjct: 517 CIYNTITRGFLRNNETSRAIQLLQEMVARG 546



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 22/232 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S+N ++    K +  D  + LF  +    L PD  T+S 
Sbjct: 323 DEAVKVFDTMV-CKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 381

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  C + R+     +   ++     P++VT+  L+  +CK                  
Sbjct: 382 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 441

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD    N  IDG+C+ G ++ A++LF  +  K ++P+V TY+ +I G C     +EA 
Sbjct: 442 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 501

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +LF EM + G   N   +N I     +N +   A  LL  M+  G   DA T
Sbjct: 502 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 553



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+     P  V+ + I+L  L KN++    ++L K +  + L PD+  ++I
Sbjct: 393 QDAIALFHEMVACSQIPNLVT-YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I+  C+ G +           R  F+      +S  K  +PD  TY+ +I+GLC++G +
Sbjct: 452 AIDGMCRAGELEAA--------RDLFS----NLSS--KGLQPDVWTYSIMINGLCRRGLL 497

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF +M +     N   Y ++ RGF   N+ + A +L  EM+ +G   +  T  + 
Sbjct: 498 DEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLF 557

Query: 197 MDELCKNGKMDEASSLLDLMIQ 218
           +  L  +G       +L   +Q
Sbjct: 558 VKMLSDDGLDQSLKQILREFVQ 579


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ +L MHP PP +  F  +L  +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 25  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 83

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +ILIN FC + RV   F VL +IL+    PD  TFT+LI+ +C                 
Sbjct: 84  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 143

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK G    A  L   M+  N +P+VV YTS+I   C      E
Sbjct: 144 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 203

Query: 174 AKRLFIEMMDQGVQ-----------------------------------PNVVTFNVIMD 198
           A  LF +M+ QG+                                    P+VV F+ ++D
Sbjct: 204 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 263

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MIQ GV PD  TY TL+DG CL   ++ A ++F  M   G
Sbjct: 264 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 320



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 139/293 (47%), Gaps = 56/293 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +FD M+      P V ++  ++  L K  +    + L + +      PD+  ++ +
Sbjct: 133 EALHLFDKMID-EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSI 191

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           I+  CK  +V+  F +  +++    +PD+ T+TSL+     +C+                
Sbjct: 192 IDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKI 251

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD + ++T++D LCK+G V +A E+   M  + V+P+VVTYT+++ G C  ++ +EA +
Sbjct: 252 LPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVK 311

Query: 177 LFIEMMDQGVQPNVVTFNVIMD-------------------------------ELCKNGK 205
           +F  M+ +G  P+V+++  +++                               E+ +  K
Sbjct: 312 VFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDK 371

Query: 206 M---DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   ++  +LL+ M+   + P+   ++T++D  C  G+V  A ++   M   G
Sbjct: 372 MKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRG 424



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 55/247 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +  ++  L K++      +LF ++   G+ PD++T++ L++  C +    H   +
Sbjct: 183 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 242

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L +++ S   PDVV F++++  +CK                    PD +TY T++DG C 
Sbjct: 243 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 302

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIR-------GFCYAND--------------- 170
           Q  +D+A ++F  M  K   P+V++YT++I        G     +               
Sbjct: 303 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGG 362

Query: 171 ------------WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
                       + + + L  EM++  + PNVV F+ ++D LCK GK+ EA  ++D+MI+
Sbjct: 363 AVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIK 422

Query: 219 HGVRPDA 225
            GV P+A
Sbjct: 423 RGVEPNA 429



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + +  ++  + K         L  +M    V PNV T   +I  FC+ N    A  +
Sbjct: 43  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 102

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G QP+  TF  ++  LC  GK+ EA  L D MI  G +P+  TY TL++G C 
Sbjct: 103 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 162

Query: 238 TGRVNHAKELFVSMESMGC 256
            G  + A  L  SME   C
Sbjct: 163 VGNTSAAIRLLRSMEQGNC 181



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 22/179 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  F+ ++  L K         +   +   G+ PD+ T++ L++  C    +     V
Sbjct: 253 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 312

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDA---ITYNTIIDGLCKQ----------------- 133
              ++R  F PDV+++T+LI   K D    ++   +I GL K+                 
Sbjct: 313 FDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVI-GLVKETPDAVKGGAVEVIRKDK 371

Query: 134 -GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
               +K + L  +M +  + PNVV +++V+   C      EA  +   M+ +GV+PN V
Sbjct: 372 MKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNAV 430


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 152/298 (51%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP    F  +L  +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 130 TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           +ILIN FC + R+ + F VL ++L+                                   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 100 SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDK 138
             F PDVVT+ +L+                     K C+P+ I YNTIID LCK   V +
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  K + P++ TY S+I   C   +W     L  EM++  + PNVV F+ ++D
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G +  A  ++D+MI+ GV PD  TY  L+DG CL   ++ A ++F +M   GC
Sbjct: 369 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++      +LF  + + G+ PD++T++ LI+  C +    H   +
Sbjct: 288 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 347

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ S   P+VV F+              T++D LCK+G +  A ++   M  + V+P
Sbjct: 348 LNEMVNSKIMPNVVVFS--------------TVVDALCKEGMIAIAHDVVDMMIKRGVEP 393

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYT+++ G C  ++ +EA ++F  M+ +G  PNV ++N++++  C+  +MD+A  LL
Sbjct: 394 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 453

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M   G+  D  TYNTL+ G C  GR+ HA  LF  M + G
Sbjct: 454 EQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 495



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++N ++  L     +  V +L   + ++ + P++   S +
Sbjct: 308 EAFNLFSEMITKGISPD-IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G ++    V+  +++    PDVVT+T+L+                     K C
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  +YN +I+G C+   +DKA  L  +M  + +  + VTY ++I G C+      A  
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+  G  P++VT+ +++D LCKN  + EA  LL  +    +  D   YN  +DG C
Sbjct: 487 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC 546

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 547 RAGELEAARDLFSNLSSKG 565



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S+NI++    + +  D  + L ++++  GL  D  T++ 
Sbjct: 412 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C +GR+ H   +   ++ S   PD+VT              Y  ++D LCK   +
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVT--------------YRILLDYLCKNHHL 516

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L   ++  N+  +++ Y   I G C A +   A+ LF  +  +G+QP+V T+N++
Sbjct: 517 AEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIM 576

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK G +DEA+ L   M ++G   D   YNT++ GF  +     A +L   M + G
Sbjct: 577 IHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEG 635



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 17/236 (7%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           + D M++    P  V+   +M G CL      D  + +F  +   G  P++ +++ILIN 
Sbjct: 382 VVDMMIKRGVEPDVVTYTALMDGHCL--RSEMDEAVKVFDTMVHKGCVPNVRSYNILING 439

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           +C++ R+     +L ++          +   LI     D +TYNT+I GLC  G +  A 
Sbjct: 440 YCQIQRMDKAMGLLEQM----------SLQGLI----ADTVTYNTLIHGLCHVGRLQHAI 485

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M      P++VTY  ++   C  +   EA  L   +    +  +++ +N+ +D +
Sbjct: 486 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 545

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           C+ G+++ A  L   +   G++PD  TYN ++ G C  G ++ A +LF  M+  GC
Sbjct: 546 CRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGC 601



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 22/199 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L         ++LF  + ++G  PDL T+ IL++  CK   ++   V+L  I
Sbjct: 467 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 526

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             S    D++ +   I                     K  +PD  TYN +I GLCK+G +
Sbjct: 527 EGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLL 586

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF KM +     +   Y ++IRGF  +N+   A +L  EM+ +G   +V T  +I
Sbjct: 587 DEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLI 646

Query: 197 MDELCKNGKMDEASSLLDL 215
           ++ L  +G +D++   L L
Sbjct: 647 VEMLSDDG-LDQSFERLRL 664



 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 39/88 (44%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  ++A   F  M+     P+ V F  ++  + K        SL   M   G+ PD +T 
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
           N L++ FC   R+ +A  +   +  +GC
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGC 216



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NIM+  L K    D    LF++++  G   D   ++ +I  F +         +
Sbjct: 568 PDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQL 627

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           L  +L   F+ DV T T ++++   D +  +   + L  +G  ++ +EL L+
Sbjct: 628 LQEMLAEGFSADVSTTTLIVEMLSDDGLDQS--FERLRLRGVGEEDRELHLR 677


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 57/295 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL  F++M+  HP P  V  F+ +L  L + KHY TVLSL KR+    +  D++  +IL
Sbjct: 67  DALFSFNHMIHKHPLPCIVE-FDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNIL 125

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVV------------------------------ 107
           INCF ++ RV   F VLG+I++  F PD V                              
Sbjct: 126 INCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGY 185

Query: 108 -----TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKE 141
                T+ ++IK  CK                    PD + YNTIIDGLCK   V +A +
Sbjct: 186 QPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALD 245

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +F ++K K V+P+V TY+ ++ G C ++   EA  LF EMM   + P+VVTFN+++D+LC
Sbjct: 246 IFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC 305

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G + EA  ++ +MI+ GV P+  TYN+L++G+CL  +V  A+ +F +M + GC
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGC 360



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K++     L +F  +   G+ PD++T+SIL++  C   +      +
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++     PDVVTF              N ++D LCK+G + +A+ +   M +K V+P
Sbjct: 282 FNEMMSLNIMPDVVTF--------------NILVDKLCKEGMLSEAQGIIKIMIEKGVEP 327

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY S++ G+C  N   EA+ +F  M+ +G  PNVV++N++++  CK  ++DEA  L 
Sbjct: 328 NYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELF 387

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D M   G+ P+ F YNTL+ G C  GR   A+ELF  M++ GC
Sbjct: 388 DEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGC 430



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 22/246 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL IF   ++     P V +++I++  L  +   +   +LF  + S  + PD+ T +I
Sbjct: 241 SEALDIFSE-IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G +S    ++  ++     P+  T+ SL+                     K 
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ ++YN +I+G CK   +D+A+ELF +M  + + PN   Y ++I G C A    EA+
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M  QG  P++VT  +++D LCK G +D A  L   M    ++P+  TY+ L+   
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAM 479

Query: 236 CLTGRV 241
             +G++
Sbjct: 480 YKSGKI 485


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 151/261 (57%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL +F +M+   P P  +  F  +L  +AK K +D V++L   L   G+  DLYT ++
Sbjct: 54  NEALDLFTHMVESRPLPSIID-FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L+NCFC+  +       LG++++  F PD+VTFTSLI   C                   
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD + Y TIID LCK G V+ A  LF +M++  ++P+VV YTS++ G C +  W +A 
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M  + ++P+V+TFN ++D   K GK  +A  L + MI+  + P+ FTY +L++GF
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+ G V+ A+++F  ME+ GC
Sbjct: 293 CMEGCVDEARQMFYLMETKGC 313



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 33/282 (11%)

Query: 3   LKSSGEGDITTITP-----------NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
           +K   E DI T T             EA+ + + M+ M   P  V  +  ++  L KN H
Sbjct: 134 MKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPD-VVMYTTIIDSLCKNGH 192

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
            +  LSLF ++ + G+ PD+  ++ L+N  C  GR      +L  + +    PDV+TF +
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 112 LIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           LI                         P+  TY ++I+G C +G VD+A+++F  M+ K 
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
             P+VV YTS+I GFC     ++A ++F EM  +G+  N +T+  ++    + GK + A 
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +   M+  GV P+  TYN LL   C  G+V  A  +F  M+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ 414



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 25/229 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F Y++      P V ++  ++    K K  D  + +F  ++  GL  +  T++ 
Sbjct: 299 DEARQMF-YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTT 357

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK------------ 117
           LI  F ++G+ +    V   ++     P++ T+  L+       KV K            
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                P+  TYN ++ GLC  G ++KA  +F  M+ + +   ++TYT +I+G C A    
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            A  LF  +  +GV+PNVVT+  ++  L + G   EA  L   M + GV
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  ++R   ++  +NEA  LF  M++    P+++ F  +++ + K  K D   +L D + 
Sbjct: 40  YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             GV  D +T N L++ FC + +   A      M  +G
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 152/298 (51%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP    F  +L  +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 92  TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           +ILIN FC + R+ + F VL ++L+                                   
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 100 SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDK 138
             F PDVVT+ +L+                     K C+P+ I YNTIID LCK   V +
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  K + P++ TY S+I   C   +W     L  EM++  + PNVV F+ ++D
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G +  A  ++D+MI+ GV PD  TY  L+DG CL   ++ A ++F +M   GC
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++      +LF  + + G+ PD++T++ LI+  C +    H   +
Sbjct: 250 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 309

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ S   P+VV F+              T++D LCK+G +  A ++   M  + V+P
Sbjct: 310 LNEMVNSKIMPNVVVFS--------------TVVDALCKEGMIAIAHDVVDMMIKRGVEP 355

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYT+++ G C  ++ +EA ++F  M+ +G  PNV ++N++++  C+  +MD+A  LL
Sbjct: 356 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 415

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M   G+  D  TYNTL+ G C  GR+ HA  LF  M + G
Sbjct: 416 EQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 457



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++N ++  L     +  V +L   + ++ + P++   S +
Sbjct: 270 EAFNLFSEMITKGISPD-IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 328

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G ++    V+  +++    PDVVT+T+L+                     K C
Sbjct: 329 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  +YN +I+G C+   +DKA  L  +M  + +  + VTY ++I G C+      A  
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 448

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+  G  P++VT+ +++D LCKN  + EA  LL  +    +  D   YN  +DG C
Sbjct: 449 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC 508

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++   G
Sbjct: 509 RAGELEAARDLFSNLSCQG 527



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 39/88 (44%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  ++A   F  M+     P+ V F  ++  + K        SL   M   G+ PD +T 
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
           N L++ FC   R+ +A  +   +  +GC
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGC 178


>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 142/255 (55%), Gaps = 28/255 (10%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F  ML MHP PPP+  F  +L  +AK KHY TVLSL K+++S G+ PD+YT 
Sbjct: 45  TLDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 103

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +I+IN FC + RV     VL +IL+    PD  TFT+L++              GLC  G
Sbjct: 104 TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVR--------------GLCVVG 149

Query: 135 FVDKAKELFLKMKD-------------KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            + +A ++F KM               K + P++ TY S+I   C   +W     L  EM
Sbjct: 150 KIGEALDVFDKMVGEGFQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 209

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +   + PNVV+ N+++D LCK GK+ EA  ++D+MIQ GV PD  TY  L+DG CL   +
Sbjct: 210 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEM 269

Query: 242 NHAKELFVSMESMGC 256
           + A ++F  M   GC
Sbjct: 270 DEAVKVFDMMVRNGC 284



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 56/252 (22%)

Query: 18  EALCIFDYMLR--MHPSP----------PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           EAL +FD M+     P+P          P + ++N ++  L     +  V +L   +  +
Sbjct: 153 EALDVFDKMVGEGFQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKS 212

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL------------- 112
            + P++ + +I+++  CK G+V+    V+  +++    PDVVT+ +L             
Sbjct: 213 KIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEA 272

Query: 113 IKV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           +KV        C  + ++YNT+I+ L            F +M      PN+VTY+ ++  
Sbjct: 273 VKVFDMMVRNGCVCNVVSYNTLINAL------------FNEMVACGQIPNLVTYSILLDY 320

Query: 165 FCYANDWNEA-----------KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            C  +   EA           + LF  +  +G+QP+V T N+++  LCK G +DEAS L 
Sbjct: 321 LCKNHRLAEAMALLKAIEGTARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLF 380

Query: 214 DLMIQHGVRPDA 225
             M ++ ++ ++
Sbjct: 381 REMDENDIKSNS 392



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 30/145 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL-SLFKRLNSTGLFPDLYTHS 75
           +EA+ +FD M+R               GC+     Y+T++ +LF  + + G  P+L T+S
Sbjct: 270 DEAVKVFDMMVRN--------------GCVCNVVSYNTLINALFNEMVACGQIPNLVTYS 315

Query: 76  ILINCFCKMGRVSHGFVVL------GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           IL++  CK  R++    +L       R L S   P         +  +PD  T+N +I G
Sbjct: 316 ILLDYLCKNHRLAEAMALLKAIEGTARDLFSNLAP---------RGLQPDVWTHNIMIRG 366

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPN 154
           LCK+G +D+A +LF +M + ++K N
Sbjct: 367 LCKRGLLDEASKLFREMDENDIKSN 391


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 152/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++ L  F+ MLR HP PPP+  F+ +LG + +  HY T +SLF +L+S G+ P + T 
Sbjct: 35  TVDDTLLSFNRMLRKHP-PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATL 93

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
           +ILINC+C    +S  F +LG IL+  F P++VTF +LI                     
Sbjct: 94  TILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMA 153

Query: 115 ----------------VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
                           +CK                    P+ ITY+T+IDGLCK   +  
Sbjct: 154 KGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIAD 213

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF  +  + +  +VV Y S+I G C    W EA RL   M+   + P+  TFN+++D
Sbjct: 214 ALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVD 273

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK G++ EA  +  +M++ G +PD  TYN L++GFCL+  V+ A+ELF  M   G
Sbjct: 274 ALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG 330



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++  L KN      L L +++    + P+L T+S +I+  CK   ++    +   +
Sbjct: 162 SYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLV 221

Query: 98  LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFV 136
                  DVV + SLI  C                      PD  T+N ++D LCK+G +
Sbjct: 222 TSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRI 281

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+ +F  M  +  KP++VTY +++ GFC +N+ +EA+ LF  M+ +G++P+V+ +NV+
Sbjct: 282 VEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK   +DEA  L   +    + P+  TYN+L+DG C  GR++  +EL   M   G
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRG 400



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++ ++  L K++     L LF  + S G+  D+  ++ LI+  C +G+      +
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L  ++R    PD  TF  L+                        KPD +TYN +++G C 
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V +A+ELF +M  + ++P+V+ Y  +I G+C  +  +EA  LF E+  + + PN+ T
Sbjct: 313 SNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLAT 372

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N ++D LCK G+M     L+D M   G  PD  TYN  LD FC +     A  LF
Sbjct: 373 YNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLF 428



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 22/209 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD YT +IL++  CK GR+     V   +++    PD+VT+ +L+               
Sbjct: 263 PDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAREL 322

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 +  +PD + YN +I+G CK   VD+A  LF +++ KN+ PN+ TY S+I G C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCK 382

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               +  + L  EM D+G  P++VT+N+ +D  CK+   ++A SL   ++Q G+ PD + 
Sbjct: 383 LGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYM 441

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           Y+ +++ FC   ++  A+E    +   GC
Sbjct: 442 YDVIVENFCKGEKLKIAEEALQHLLIHGC 470



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 18/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F  M++    P  V+   +M G CL+ N        LF R+   GL PD+  +++
Sbjct: 283 EAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNN--VSEARELFNRMVKRGLEPDVLNYNV 340

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+  V    V+   I   C            K   P+  TYN++IDGLCK G +
Sbjct: 341 LINGYCKIDMVDEAMVLFKEI--RC------------KNLVPNLATYNSLIDGLCKLGRM 386

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
              +EL  +M D+   P++VTY   +  FC +  + +A  LF +++ QG+ P+   ++VI
Sbjct: 387 SCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVI 445

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  CK  K+  A   L  ++ HG  P+  TY  +++  C     + A  L   M+   C
Sbjct: 446 VENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDC 505


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 22/252 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++  P P  V  F+ +L  +AK+K+YD V+SLF  +   G+  DLY+++I+INC C+  
Sbjct: 1   MIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 59

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYN 124
           R      V+G++++  + PDVVT +SLI   C                    +PD + YN
Sbjct: 60  RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIIDG CK G V+ A ELF +M+   V+ + VTY S++ G C +  W++A RL  +M+ +
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 179

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TF  ++D   K GK  EA  L + M +  V PD FTYN+L++G C+ GRV+ A
Sbjct: 180 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 239

Query: 245 KELFVSMESMGC 256
           K++   M + GC
Sbjct: 240 KQMLDLMVTKGC 251



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 24/248 (9%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M    P V +F  ++    K   +   + L++ +    + PD++T++ LIN  C  GRV 
Sbjct: 178 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 237

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTII 127
               +L  ++     PDVVT+ +LI   CK                     D ITYNTII
Sbjct: 238 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 297

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            G  + G  D A+E+F +M   + +PN+ TY+ ++ G C      +A  LF  M    ++
Sbjct: 298 QGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 354

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++ T+N+++  +CK G +++A  L   +   G++PD  +Y T++ GFC   + + +  L
Sbjct: 355 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLL 414

Query: 248 FVSMESMG 255
           +  M+  G
Sbjct: 415 YRKMQEDG 422



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 19/225 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +++ M R     P V ++N ++  L  +   D    +   + + G  PD+ T++ 
Sbjct: 202 SEAMKLYEEMTR-RCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----VCKPDAI----------- 121
           LIN FCK  RV  G  +   + +     D +T+ ++I+      +PDA            
Sbjct: 261 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 320

Query: 122 ---TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
              TY+ ++ GLC    V+KA  LF  M+   ++ ++ TY  VI G C   +  +A  LF
Sbjct: 321 NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLF 380

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             +  +G++P+VV++  ++   C+  + D++  L   M + G+ P
Sbjct: 381 RSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 155/295 (52%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +L   AK KHY T +SL  RL   G+ PDL T +I
Sbjct: 41  DDAVSQFNRMLCMRHTPPIIQ-FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK                      
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    P+   Y+TIID LCK   V +A 
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  +VVTY+++I GFC      EA  L  EM+ + + PNV T+N+++D L
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA S+L +M++  V+PD  TY+TL+DG+ L   V  A+ +F +M  MG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M  M  +P  V ++ I++    KNK  D  L+LFK ++   + P + T+S L
Sbjct: 322 KAQHVFNAMSLMGVTPD-VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+ + + ++   +R    P              D ITY+++IDGLCK G +D
Sbjct: 381 IDGLCKSGRIPYVWDLIDE-MRDRGQP-------------ADVITYSSLIDGLCKNGHLD 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF KMKD+ ++PN+ T+T ++ G C      +A+ +F +++ +G   NV T+NV++
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMI 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  CK G ++EA ++L  M  +G  P+AFT+ T++         + A++L   M + G
Sbjct: 487 NGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGC-----LAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           EA  +   ML+    P  ++   +M G      + K +H    +SL       G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM------GVTPDVH 340

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++ILIN FCK   V     +   + +    P +VT++SLI              DGLCK
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI--------------DGLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    +L  +M+D+    +V+TY+S+I G C     + A  LF +M DQ ++PN+ T
Sbjct: 387 SGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F +++D LCK G++ +A  +   ++  G   + +TYN +++G C  G +  A  +   ME
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506

Query: 253 SMGC 256
             GC
Sbjct: 507 DNGC 510



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  ++ ++  L K +       LF  +   G+  D+ T+S LI  FC  G++    
Sbjct: 195 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   P+  TYN ++D LCK+G V +AK +   M    V
Sbjct: 255 GLLNEMV--------------LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+V+TY++++ G+    +  +A+ +F  M   GV P+V T+ ++++  CKN  +DEA +
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALN 360

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M Q  + P   TY++L+DG C +GR+ +  +L   M   G
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRG 404



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G++    S+L  +++ G  PD  T NTL+ G CL G+V  A
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ +L MHP PP +  F  +L  +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 36  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 94

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +ILIN FC + RV   F VL +IL+    PD  TFT+LI+ +C                 
Sbjct: 95  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 154

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK G    A  L   M+  N +P+VV YTS+I   C      E
Sbjct: 155 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 214

Query: 174 AKRLFIEMMDQGVQ-----------------------------------PNVVTFNVIMD 198
           A  LF +M+ QG+                                    P+VV F+ ++D
Sbjct: 215 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 274

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MIQ GV PD  TY TL+DG CL   ++ A ++F  M   G
Sbjct: 275 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 331



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++  ++  L     +  V +L  ++ ++ + PD+   S +
Sbjct: 214 EAFNLFSQMVGQGISPD-IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 272

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G+V+    ++  +++    PDVVT+T+L+                     K  
Sbjct: 273 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 332

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD I+Y T+I+G CK   +DKA  LF +M  K   P+  TY +++ G C+     +A  
Sbjct: 333 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIA 392

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P++VT+++++D LCKN  ++EA +LL  +    + PD   YN ++DG C
Sbjct: 393 LFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 452

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 453 RAGELEAARDLFSNLSSKG 471



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 29/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTG 66
           EG +T     EA  I D M++    P  V+   +M G CL      D  + +F  +   G
Sbjct: 279 EGKVT-----EAHEIVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVFDMMVRKG 331

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------- 117
             PD+ +++ LIN +CK+ ++     +   + R  + PD  T+ +L+  +C         
Sbjct: 332 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAI 391

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD +TY+ ++D LCK   +++A  L   ++  N+ P++  Y  +I G 
Sbjct: 392 ALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 451

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A +   A+ LF  +  +G+ P+V T+N+++  LCK G ++EA+ L   M  +   PD 
Sbjct: 452 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 511

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYNT+  GF        A +L   M + G
Sbjct: 512 CTYNTIARGFLQNNETLRAIQLLEEMLARG 541



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  F+ ++  L K         +   +   G+ PD+ T++ L++  C    +     V
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDGLCK 132
              ++R  F PDV+++T+LI                 ++C+    PD  TYNT++ GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A  LF +M  +   P++VTY+ ++   C      EA  L   +    + P++  
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQV 443

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+D +C+ G+++ A  L   +   G+ P  +TYN ++ G C  G +N A +LF+ M+
Sbjct: 444 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 503

Query: 253 SMGC 256
              C
Sbjct: 504 GNDC 507



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+R     P V S+  ++    K    D  + LF+ +      PD  T++ 
Sbjct: 318 DEAVKVFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           L++  C +GR+     +   ++     PD+VT++ L+  +CK                  
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN 436

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   YN IIDG+C+ G ++ A++LF  +  K + P+V TY  +I G C     NEA 
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 496

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +LF+EM      P+  T+N I     +N +   A  LL+ M+  G   D  T   L++
Sbjct: 497 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVE 554



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 23/222 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R     P   ++N ++  L         ++LF  + + G  PDL T+SI
Sbjct: 353 DKAMYLFEEMCR-KEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK   +     +L  I  S   PD+  +  +I                     K 
Sbjct: 412 LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 471

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TYN +I GLCK+G +++A +LF++M   +  P+  TY ++ RGF   N+   A 
Sbjct: 472 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 531

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +L  EM+ +G   +V T  ++++ L  +G +D++S  L L +
Sbjct: 532 QLLEEMLARGFSADVSTTTLLVEMLSDDG-LDQSSCFLMLSV 572



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 108 TFTSLIKVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           +F  L+ +  P +I  +  ++  + K         L  +M    V PNV T   +I  FC
Sbjct: 43  SFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC 102

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           + N    A  +  +++  G QP+  TF  ++  LC  GK+ EA  L D MI  G +P+  
Sbjct: 103 HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVV 162

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY TL++G C  G  + A  L  SME   C
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNC 192


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 154/298 (51%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL +F+ MLRM P PP +  F+ +L  + + KHY TVLSL+K+++S G+  + YT 
Sbjct: 34  TIDDALSLFNRMLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTL 92

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           +ILIN FC + R+   F VLG IL+                                   
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 100 SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDK 138
             F PDV+T+ +LI                     + C+P  + Y+TIID LCK   + +
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTE 212

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF  M  K + PN  TY+S+I G C    W EA RLF  M+ + + P+ +TFN ++D
Sbjct: 213 ALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVD 272

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G + +A  ++D+MIQ  ++PD  TYN+L+DG CL   +     +F +M   GC
Sbjct: 273 ALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGC 330



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F  ML    SP   +  +++ G L    H+   + LF  +    + PD  T + L
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHG-LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 270

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G V     V+  +++S   PDVVT+ SL+                     K C
Sbjct: 271 VDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGC 330

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  I+Y T+I+G CK   +DKA  LF +M  + + P+ VTY ++I G C+     +A  
Sbjct: 331 VPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIA 390

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+  G  P++VT+ ++ D LCKN ++ EA  LL ++    + PD   Y+ ++DG C
Sbjct: 391 LFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMC 450

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF  + S G
Sbjct: 451 RAGELEAARDLFSKLSSKG 469



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 27/240 (11%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M+R     P V S+  ++    K +  D  + LF+ ++  GL PD  T++ LI+  
Sbjct: 321 VFDTMVR-KGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379

Query: 82  CKMGRVS------HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           C +GR+       H  VV G+I                    PD +TY  + D LCK   
Sbjct: 380 CHVGRLRDAIALFHEMVVYGQI--------------------PDLVTYRILFDYLCKNHR 419

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A  L   ++  N+ P++  Y+ V+ G C A +   A+ LF ++  +G+ P+V T+ +
Sbjct: 420 LAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTI 479

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ LC+ G + EAS L   M ++G  P+A TYN +  GF        A +LF  M S G
Sbjct: 480 MINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRG 539



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M +    P  V+ +N ++  L         ++LF  +   G  PDL T+ I
Sbjct: 351 DKAMGLFEEMSQQGLIPDTVT-YNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 409

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L +  CK  R++   V+L  I  +   PD+  ++ ++                     K 
Sbjct: 410 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 469

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY  +I+GLC+QG + +A +LF +M +    PN  TY  + RGF   N+   A 
Sbjct: 470 LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAI 529

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +LF EM+ +G   +V T  ++++ L  +G
Sbjct: 530 QLFQEMLSRGFSIDVSTTTLLVEMLSDDG 558


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ +L MHP PP +  F  +L  +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 45  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 103

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +ILIN FC + RV   F VL +IL+    PD  TFT+LI+ +C                 
Sbjct: 104 NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 163

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK G    A  L   M+  N +P+VV YTS+I   C      E
Sbjct: 164 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 223

Query: 174 AKRLFIEMMDQGVQ-----------------------------------PNVVTFNVIMD 198
           A  LF +M+ QG+                                    P+VV F+ ++D
Sbjct: 224 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MIQ GV PD  TY TL+DG CL   ++ A ++F  M   G
Sbjct: 284 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++  ++  L     +  V +L  ++ ++ + PD+   S +
Sbjct: 223 EAFNLFSQMVGQGISPD-IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 281

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G+V+    ++  +++    PDVVT+T+L+                     K  
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD I+Y T+I+G CK   +DKA  LF +M  K   P+  TY +++ G C+     +A  
Sbjct: 342 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIA 401

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P++VT+++++D LCKN  ++EA +LL  +    + PD   YN ++DG C
Sbjct: 402 LFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 461

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 462 RAGELEAARDLFSNLSSKG 480



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 29/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTG 66
           EG +T     EA  I D M++    P  V+   +M G CL      D  + +F  +   G
Sbjct: 288 EGKVT-----EAHEIVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVFDMMVRKG 340

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK-------- 117
             PD+ +++ LIN +CK+ ++     +   + R  + PD  T+ +L+  +C         
Sbjct: 341 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAI 400

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD +TY+ ++D LCK   +++A  L   ++  N+ P++  Y  +I G 
Sbjct: 401 ALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A +   A+ LF  +  +G+ P+V T+N+++  LCK G ++EA+ L   M  +   PD 
Sbjct: 461 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 520

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYNT+  GF        A +L   M + G
Sbjct: 521 CTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  F+ ++  L K         +   +   G+ PD+ T++ L++  C    +     V
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDGLCK 132
              ++R  F PDV+++T+LI                 ++C+    PD  TYNT++ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A  LF +M  +   P++VTY+ ++   C      EA  L   +    + P++  
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQV 452

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+D +C+ G+++ A  L   +   G+ P  +TYN ++ G C  G +N A +LF+ M+
Sbjct: 453 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512

Query: 253 SMGC 256
              C
Sbjct: 513 GNDC 516



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+R     P V S+  ++    K    D  + LF+ +      PD  T++ 
Sbjct: 327 DEAVKVFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           L+   C +GR+     +   ++     PD+VT++ L+  +CK                  
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN 445

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   YN IIDG+C+ G ++ A++LF  +  K + P+V TY  +I G C     NEA 
Sbjct: 446 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEAN 505

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           +LF+EM      P+  T+N I     +N +   A  LL+ M+  G   D+
Sbjct: 506 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 108 TFTSLIKVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           +F  L+ +  P +I  +  ++  + K         L  +M    V PNV T   +I  FC
Sbjct: 52  SFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC 111

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           + N    A  +  +++  G QP+  TF  ++  LC  GK+ EA  L D MI  G +P+  
Sbjct: 112 HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVV 171

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY TL++G C  G  + A  L  SME   C
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNC 201


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 156/260 (60%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ +LR +P+PP +  FN +LG L K+KHY TVL L K++   G+ P+L   +I
Sbjct: 69  DDAVSLFNCLLRQNPTPPAIE-FNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LINCFC++G +   F V  +IL+  + P+ +TFT+LIK +C                   
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + + I+Y T+IDGLCK G    A +L  ++  K V+PNVV Y+++I G C     N+A 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAF 247

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ EM+ +G+ PNVVT++ ++      GK+ +A  L + MI   ++PD +T+N L+D F
Sbjct: 248 DLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVF 307

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C +G++++A +L   M   G
Sbjct: 308 CKSGKISYALKLVDEMHDRG 327



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  + K+KH +    L+  + S G+ P++ T+S LI+ F  +G++     +
Sbjct: 225 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDL 284

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             +++     PDV TF  L+ V CK                    P+ +TY++I+D LCK
Sbjct: 285 FNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCK 344

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VDKA  L  K+KD+ ++PN+ TYT +I G C +    +A+ +F +++ +G    VVT
Sbjct: 345 THRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVT 404

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + V+    CK G  DEAS+LL  M ++G  PDA TY  +       G  + A++L
Sbjct: 405 YIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKL 459



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            PP + +++ +L  L K    D  ++L  +L   G+ P+++T++ILI+  C  G++    
Sbjct: 328 QPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDAR 387

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   +L   +   VV              TY  +  G CK+G  D+A  L  KM++   
Sbjct: 388 NIFEDLLVKGYDITVV--------------TYIVMFYGFCKKGLFDEASALLSKMEENGC 433

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            P+  TY  +        + + A++L  E
Sbjct: 434 IPDAKTYELIKLSLFKKGENDMAEKLHRE 462



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 68/139 (48%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K + I Y++          VD A  LF  +  +N  P  + +  ++     +  ++    
Sbjct: 49  KINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLY 108

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M  +G++PN+V  N++++  C+ G +  A S+   +++ G  P+  T+ TL+ G C
Sbjct: 109 LSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLC 168

Query: 237 LTGRVNHAKELFVSMESMG 255
           L G+++ A      + ++G
Sbjct: 169 LKGQIHQALNFHDKLVALG 187


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 56/296 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++ML   P P  +    ++   +   ++YD V+SL K++   GL P++YT SI
Sbjct: 74  DDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSI 133

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            +NCFC++ RV  GF VL ++++    P +VTFT+LI                     K 
Sbjct: 134 FMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKG 193

Query: 116 CKPDAITYNTIIDGLCKQG-----------------------------------FVDKAK 140
           C+PD  TYNTII+GLCK G                                    V++A 
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEAL 253

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F  MK K + P++ TYTS+I+G C  + W EA  L  EM    + P++VTFNV++D  
Sbjct: 254 DIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTF 313

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK GK+ EA  +L  M + GV P+  TY++L+ G+ L   V  A++LF  M + GC
Sbjct: 314 CKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGC 369



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 142/259 (54%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+      P V ++N ++  L K         L K++   G  P++ T+S L
Sbjct: 181 QAVELFDDMVA-KGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTL 239

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  C+   V+    +   +     +PD+ T+TSLI+ +CK                   
Sbjct: 240 IDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNI 299

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+N ++D  CK+G V +A  +   M +  V+PNVVTY+S++ G+    D  EA++
Sbjct: 300 MPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARK 359

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G +PN+ ++N++++  CK  ++DEA  L + MI  G+ P+  +YNTL+ GFC
Sbjct: 360 LFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFC 419

Query: 237 LTGRVNHAKELFVSMESMG 255
             G++  A++LF +M + G
Sbjct: 420 QLGKLREAQDLFRNMCTNG 438



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 15/237 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM +     P + ++  ++  L K   +    +L   + S  + PD+ T ++
Sbjct: 250 NEALDIFSYM-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G+VS    VL  +      P+VVT++SL+         Y+   D       V
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLM-------YGYSLWTD-------V 354

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A++LF  M  K  KPN+ +Y  +I G+C A   +EA +LF EM+ QG+ PN V++N +
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +   C+ GK+ EA  L   M  +G  PD FTY+ LLDGFC  G +  A  LF +M+S
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQS 471



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 26/242 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLS--LFKRLNSTGLFPDLYTH 74
           +EAL +   M  M   P  V+  ++M G    +   D V +  LF  + + G  P+++++
Sbjct: 320 SEALGVLKTMTEMGVEPNVVTYSSLMYG---YSLWTDVVEARKLFHVMITKGCKPNIFSY 376

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------- 117
           +ILIN +CK  R+     +   ++    TP+ V++ +LI   C+                
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCT 436

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD  TY+ ++DG CKQG++ KA  LF  M+   +KPN+V YT ++   C + +  +
Sbjct: 437 NGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKD 496

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A++LF E+  QG+QP+V  +  I++ LCK G +DEA      M   G  PD  +YN ++ 
Sbjct: 497 ARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIR 556

Query: 234 GF 235
           G 
Sbjct: 557 GL 558



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 25/211 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F+ M+    +P  VS +N ++    +         LF+ + + G  PDL+T+SI
Sbjct: 390 DEAMQLFNEMIHQGLTPNNVS-YNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSI 448

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           L++ FCK G +   F +   +  +   P++V +T L+  +CK                  
Sbjct: 449 LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQG 508

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    Y TII+GLCK+G +D+A E F  M+     P+ ++Y  +IRG     D + A 
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRAL 568

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            L  EM D+G   +V      + E+C+  K+
Sbjct: 569 LLVGEMRDRGFIADV---RPCLSEVCQGKKV 596


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 61/304 (20%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M+R  P P  V  F+     +A+ K ++ VL   K
Sbjct: 58  ERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCK 112

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
           +L   G+  ++YT +I+INCFC+  +    + VLG++++  + PD  TF +LIK      
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 172

Query: 115 ---------------VCKPDAITYN----------------------------------- 124
                           C+PD +TYN                                   
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIID LC+ G +D A  LF +M+ K +K +VVTY S++RG C A  WN+   L  +M+ +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TFNV++D   K GK+ EA+ L   MI  G+ P+  TYNTL+DG+C+  R++ A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 245 KELF 248
             + 
Sbjct: 353 NNML 356



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 23/253 (9%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
            D + +M        V +++ ++  L ++   D  +SLFK + + G+   + T++ L+  
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPD 119
            CK G+ + G ++L  ++     P+V+TF  L+ V                       P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ITYNT++DG C Q  + +A  +   M      P++VT+TS+I+G+C     ++  ++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +  +G+  N VT+++++   C++GK+  A  L   M+ HGV PD  TY  LLDG C  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 240 RVNHAKELFVSME 252
           ++  A E+F  ++
Sbjct: 453 KLEKALEIFEDLQ 465



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  + D M+R   SP  V+  +++ G C+ K    D  + +F+ ++  GL  +  T+S
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK--RVDDGMKVFRNISKRGLVANAVTYS 407

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL+  FC+ G++          L      ++V+   L     PD +TY  ++DGLC  G 
Sbjct: 408 ILVQGFCQSGKIK---------LAEELFQEMVSHGVL-----PDVMTYGILLDGLCDNGK 453

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++KA E+F  ++   +   +V YT++I G C      +A  LF  +  +GV+PNV+T+ V
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LCK G + EA+ LL  M + G  P+  TYNTL+      G +  + +L   M+S G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 32/223 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    ++        LF+ + S G+ PD+ T+ IL++  C  G++     +   +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S     +V +T++I                     K  KP+ +TY  +I GLCK+G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  KM++    PN  TY ++IR      D   + +L  EM   G   +  +  ++
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 197 MDEL-----------CKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           +D L           C +        LL+L     +R  + T+
Sbjct: 585 IDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTF 627



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 108 TFTSLIKVCKPDAITYNTIIDG-LC-----KQGFVDKAKE----LFLKMKDKNVKPNVVT 157
           T +S    C+ D   +++I +G +C     + G VD  K+    LF +M      P++V 
Sbjct: 34  TISSFFSSCERD---FSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVD 90

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           ++           +N       ++   G+  N+ T N++++  C+  K   A S+L  ++
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 150

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  PD  T+NTL+ G  L G+V+ A  L   M   GC
Sbjct: 151 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 152/295 (51%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F+ ML M P PPP   FN +L  L K + + T +SL K L+  G+  DL T +I
Sbjct: 51  NDAVALFNRMLLMRP-PPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNI 109

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC +G+++  F VL  IL+  + PDV+T T+LIK                      
Sbjct: 110 LINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALE 169

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    PD + YN IID LCK   V +A 
Sbjct: 170 FQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEAC 229

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L+ +M  K + PNVVTYT++I GFC      EA  L  EM  + + P+V TF++++D L
Sbjct: 230 NLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDAL 289

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K GKM  A  +L +M++  V+PD  TYN+L+DG+ L   V HAK +F SM   G
Sbjct: 290 GKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSG 344



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +NI++  L KNK      +L+  +N+  ++P++ T++ LI  FC MG +     +
Sbjct: 207 PDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVAL 266

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +      PDV TF+ LI              D L K+G +  AK +   M    VKP
Sbjct: 267 LNEMKLKNINPDVYTFSILI--------------DALGKEGKMKAAKIVLAVMMKAYVKP 312

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTY S++ G+   N+   AK +F  M   GV P V ++ +++D LCK   +DEA SL 
Sbjct: 313 DVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLF 372

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + M    V P+  T+N+L+DG C +GR+ +  +L   M 
Sbjct: 373 EEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMR 411



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + + M ++    P V +F+I++  L K         +   +    + PD+ T++ L
Sbjct: 262 EAVALLNEM-KLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSL 320

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +  +  V H   V   + +S  TP V ++T +I  +CK                   
Sbjct: 321 VDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNV 380

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ IT+N++IDGLCK G +    +L  KM+D++   +V+TY+S+I   C     ++A  
Sbjct: 381 IPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIA 440

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M+ Q +QP++ T+ +++D LCK G++  A  +   ++  G   D  TY  ++ GFC
Sbjct: 441 LFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFC 500

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A  L   ME  GC
Sbjct: 501 KAGLFDEALALLSKMEDNGC 520



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ IM+  L K K  D  +SLF+ +    + P+  T + LI+  CK GR+++ + +
Sbjct: 347 PGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDL 406

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           + ++       DV+T++SLI  +CK                    PD  TY  +IDGLCK
Sbjct: 407 VDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCK 466

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A+E+F  +  K    ++ TYT +I GFC A  ++EA  L  +M D G  PN +T
Sbjct: 467 GGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAIT 526

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           F++I+  L +  + D+A  LL  MI  G+
Sbjct: 527 FDIIICALFEKDENDKAEKLLREMIARGL 555



 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 34/73 (46%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           ND N+A  LF  M+     P    FN I+  L K  +   A SL   +   G+  D  T 
Sbjct: 48  NDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTL 107

Query: 229 NTLLDGFCLTGRV 241
           N L++ FC  G++
Sbjct: 108 NILINCFCHLGQI 120


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 61/304 (20%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M+R  P P  V  F+     +A+ K ++ VL   K
Sbjct: 58  ERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCK 112

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
           +L   G+  ++YT +I+INCFC+  +    + VLG++++  + PD  TF +LIK      
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 172

Query: 115 ---------------VCKPDAITYN----------------------------------- 124
                           C+PD +TYN                                   
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIID LC+ G +D A  LF +M+ K +K +VVTY S++RG C A  WN+   L  +M+ +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TFNV++D   K GK+ EA+ L   MI  G+ P+  TYNTL+DG+C+  R++ A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 245 KELF 248
             + 
Sbjct: 353 NNML 356



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 23/253 (9%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
            D + +M        V +++ ++  L ++   D  +SLFK + + G+   + T++ L+  
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPD 119
            CK G+ + G ++L  ++     P+V+TF  L+ V                       P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ITYNT++DG C Q  + +A  +   M      P++VT+TS+I+G+C     ++  ++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +  +G+  N VT+++++   C++GK+  A  L   M+ HGV PD  TY  LLDG C  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 240 RVNHAKELFVSME 252
           ++  A E+F  ++
Sbjct: 453 KLEKALEIFEDLQ 465



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  + D M+R   SP  V+  +++ G C+ K    D  + +F+ ++  GL  +  T+S
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK--RVDDGMKVFRNISKRGLVANAVTYS 407

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL+  FC+ G++          L      ++V+   L     PD +TY  ++DGLC  G 
Sbjct: 408 ILVQGFCQSGKIK---------LAEELFQEMVSHGVL-----PDVMTYGILLDGLCDNGK 453

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++KA E+F  ++   +   +V YT++I G C      +A  LF  +  +GV+PNV+T+ V
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LCK G + EA+ LL  M + G  P+  TYNTL+      G +  + +L   M+S G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 24/200 (12%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    ++        LF+ + S G+ PD+ T+ IL++  C  G++     +   +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S     +V +T++I                     K  KP+ +TY  +I GLCK+G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  KM++    PN  TY ++IR      D   + +L  EM   G   +  +  ++
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 197 MDELCKNGKMDEASSLLDLM 216
           +D L  +G++D+  S LD++
Sbjct: 585 IDMLL-SGELDK--SFLDML 601



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 108 TFTSLIKVCKPDAITYNTIIDG-LC-----KQGFVDKAKE----LFLKMKDKNVKPNVVT 157
           T +S    C+ D   +++I +G +C     + G VD  K+    LF +M      P++V 
Sbjct: 34  TISSFFSSCERD---FSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVD 90

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           ++           +N       ++   G+  N+ T N++++  C+  K   A S+L  ++
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 150

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  PD  T+NTL+ G  L G+V+ A  L   M   GC
Sbjct: 151 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 61/304 (20%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M+R  P P  V  F+     +A+ K ++ VL   K
Sbjct: 48  ERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCK 102

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
           +L   G+  ++YT +I+INCFC+  +    + VLG++++  + PD  TF +LIK      
Sbjct: 103 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 162

Query: 115 ---------------VCKPDAITYN----------------------------------- 124
                           C+PD +TYN                                   
Sbjct: 163 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 222

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIID LC+ G +D A  LF +M+ K +K +VVTY S++RG C A  WN+   L  +M+ +
Sbjct: 223 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 282

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TFNV++D   K GK+ EA+ L   MI  G+ P+  TYNTL+DG+C+  R++ A
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 342

Query: 245 KELF 248
             + 
Sbjct: 343 NNML 346



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 125/238 (52%), Gaps = 21/238 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +++ ++  L ++   D  +SLFK + + G+   + T++ L+   CK G+ + G ++L 
Sbjct: 218 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 277

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++     P+V+TF  L+ V                       P+ ITYNT++DG C Q 
Sbjct: 278 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 337

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A  +   M      P++VT+TS+I+G+C     ++  ++F  +  +G+  N VT++
Sbjct: 338 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 397

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++   C++GK+  A  L   M+ HGV PD  TY  LLDG C  G++  A E+F  ++
Sbjct: 398 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 455



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  + D M+R   SP  V+  +++ G C+ K    D  + +F+ ++  GL  +  T+S
Sbjct: 340 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK--RVDDGMKVFRNISKRGLVANAVTYS 397

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL+  FC+ G++          L      ++V+   L     PD +TY  ++DGLC  G 
Sbjct: 398 ILVQGFCQSGKIK---------LAEELFQEMVSHGVL-----PDVMTYGILLDGLCDNGK 443

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++KA E+F  ++   +   +V YT++I G C      +A  LF  +  +GV+PNV+T+ V
Sbjct: 444 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 503

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LCK G + EA+ LL  M + G  P+  TYNTL+      G +  + +L   M+S G
Sbjct: 504 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 563



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    ++        LF+ + S G+ PD+ T+ IL++  C  G++     +   +
Sbjct: 395 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 454

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S     +V +T++I                     K  KP+ +TY  +I GLCK+G +
Sbjct: 455 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 514

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  KM++    PN  TY ++IR      D   + +L  EM   G   +  +  ++
Sbjct: 515 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 574

Query: 197 MDEL 200
           +D L
Sbjct: 575 IDML 578



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 108 TFTSLIKVCKPDAITYNTIIDG-LC-----KQGFVDKAKE----LFLKMKDKNVKPNVVT 157
           T +S    C+ D   +++I +G +C     + G VD  K+    LF +M      P++V 
Sbjct: 24  TISSFFSSCERD---FSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVD 80

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           ++           +N       ++   G+  N+ T N++++  C+  K   A S+L  ++
Sbjct: 81  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 140

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  PD  T+NTL+ G  L G+V+ A  L   M   GC
Sbjct: 141 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 33/47 (70%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           A+ L  EM+ +G+ PN +T++ ++D  CK  ++DEA+ +LDLM+  G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           A+EL  +M  + + PN +TY+S+I GFC  N  +EA ++   M+ +G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           A  L   MIQ G+ P+  TY++L+DGFC   R++ A ++   M + G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 153/295 (51%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  ++ MHP  P V  FN++LG + K KHY T +SL K++   G+ P + T SI
Sbjct: 60  DDAVALFTRLITMHP-LPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118

Query: 77  LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
           LINC+C +G +   F VLG +L+                                     
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
           F  D VT+ +LI                     +V +P+ + YN I+DGLCK G V +A+
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEAR 238

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +L+  +  + + P+V TYT +I GFC    W E  RL  +M+D+ V  NV T+N+++D L
Sbjct: 239 DLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDAL 298

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G + +A  + +LMI+ G RPD  T+NTL+ G+CL   V  A++LF +    G
Sbjct: 299 CKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECG 353



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++              LF      G+ PD+++++ILI  +CK  R+     +
Sbjct: 321 PDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSL 380

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++      P++VT++SLI              DGLCK G +  A ELF  + D    P
Sbjct: 381 FNKMNYKKLAPNIVTYSSLI--------------DGLCKSGRISYAWELFSAIHDGGPSP 426

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV+TY  ++   C     ++A  LF  M ++G+ PNV ++N++++  CK+ ++DEA +L 
Sbjct: 427 NVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLF 486

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M +  + PD+ TYN L+DG C +GR++HA ELF  M   G
Sbjct: 487 EEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 126/222 (56%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N+++  L K+        L+  +   G+ PD++T++ LI+ FC +G+       
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWRE---- 271

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + R+L      +V            +  TYN +ID LCK+G + KA ++   M ++  +P
Sbjct: 272 VTRLLCDMVDRNV----------NLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRP 321

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VT+ +++ G+C  ND  EA++LF    + G+ P+V ++N+++   CKN ++DEA SL 
Sbjct: 322 DLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLF 381

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M    + P+  TY++L+DG C +GR+++A ELF ++   G
Sbjct: 382 NKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGG 423



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 21/190 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI++    KN   D  LSLF ++N   L P++ T+S LI+  CK GR+S+ + +
Sbjct: 356 PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWEL 415

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              I     +P+V+T+  ++  +CK                    P+  +YN +I+G CK
Sbjct: 416 FSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCK 475

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A  LF +M  +N+ P+ VTY  +I G C +   + A  LF  M D G   +V+T
Sbjct: 476 SKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVIT 535

Query: 193 FNVIMDELCK 202
           +N++ D   K
Sbjct: 536 YNILFDAFSK 545



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 132 KQGF--VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           K GF  +D A  LF ++   +  P+VV +  ++        +  A  L  +M  +G+ P+
Sbjct: 53  KSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPS 112

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +VT +++++  C  G M  A S+L ++++ G + +A T  T++ G C+ G V  A E   
Sbjct: 113 IVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHD 172

Query: 250 SMESMG 255
           S+ + G
Sbjct: 173 SVVAQG 178


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 147/261 (56%), Gaps = 25/261 (9%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T + A+  F+ MLRM P PP    FN +L  +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 75  SILINCFCKM--GRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
            ILIN FC +  G++     +  +++   F PDVVT+ +LI                   
Sbjct: 100 HILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSM 159

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             K C+P+   YNTIID LCK   V +A  LF +M  K + P++ TY S+I   C   +W
Sbjct: 160 VQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEW 219

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNT 230
                L  EM+D  + P+VV+FN ++D LCK GK+ EA  ++D MIQ  G  P+  +YNT
Sbjct: 220 KHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNT 279

Query: 231 LLDGFCLTGRVNHAKELFVSM 251
           L++G+C   R++ A  LF  M
Sbjct: 280 LINGYCKIQRIDKAMYLFGEM 300



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++      +LF  + + G+ PD++T++ LI+  C +    H   +
Sbjct: 166 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 225

Query: 94  LGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGLC 131
           L  ++ S   PDVV+F +++                        C P+ I+YNT+I+G C
Sbjct: 226 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYC 285

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   +DKA  LF +M  + + P+ VTY+++I G C+     +A  LF EM+     PN+V
Sbjct: 286 KIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLV 345

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ +++D LCKN  + EA +LL  +    + PD    N  +DG C  G +  A++LF ++
Sbjct: 346 TYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNL 405

Query: 252 ESMG 255
            S G
Sbjct: 406 SSKG 409



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 28/247 (11%)

Query: 34  PPVSSFNIMLGCLAKN----KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           P V SFN ++  L K     + +D V  + +R    G  P++ +++ LIN +CK+ R+  
Sbjct: 236 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR---GGCMPNVISYNTLINGYCKIQRIDK 292

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIID 128
              + G + R    PD VT+++LI  +C                     P+ +TY  ++D
Sbjct: 293 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLD 352

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LCK  ++ +A  L   ++  N+ P++      I G C A +   A+ LF  +  +G+QP
Sbjct: 353 YLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQP 412

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V T++++++ LC+ G +DEAS L   M ++G   +   YNT+  GF      + A +L 
Sbjct: 413 DVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLL 472

Query: 249 VSMESMG 255
             M + G
Sbjct: 473 QEMVARG 479



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 130/261 (49%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++N ++  L     +  V +L   +  + + PD+ + + +
Sbjct: 186 EAFNLFSEMVTKGISPD-IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 244

Query: 78  INCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLI-----------------KVCK-- 117
           ++  CK G+V+    V+ +++ R    P+V+++ +LI                 ++C+  
Sbjct: 245 VDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE 304

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TY+T+I GLC    +  A  LF +M   +  PN+VTY  ++   C      EA 
Sbjct: 305 LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAM 364

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   +    + P++   N+ +D +C+ G+++ A  L   +   G++PD +TY+ +++G 
Sbjct: 365 ALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 424

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G ++ A +LF  M+  GC
Sbjct: 425 CRRGLLDEASKLFREMDENGC 445



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 26/241 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG +T     EA  + D M++     P V S+N ++    K +  D  + LF  +    L
Sbjct: 251 EGKVT-----EAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 305

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            PD  T+S LI+  C + R+     +   ++     P++VT+  L+  +CK         
Sbjct: 306 IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMA 365

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD    N  IDG+C+ G ++ A++LF  +  K ++P+V TY+ +I G C
Sbjct: 366 LLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLC 425

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                +EA +LF EM + G   N   +N I     +N +   A  LL  M+  G   DA 
Sbjct: 426 RRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAS 485

Query: 227 T 227
           T
Sbjct: 486 T 486



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+     P  V+ + I+L  L KN++    ++L K +  + L PD+  ++I
Sbjct: 326 QDAIALFHEMVACSQIPNLVT-YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 384

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I+  C+ G +           R  F+      +S  K  +PD  TY+ +I+GLC++G +
Sbjct: 385 AIDGMCRAGELEAA--------RDLFS----NLSS--KGLQPDVWTYSIMINGLCRRGLL 430

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF +M +     N   Y ++ RGF   N+ + A +L  EM+ +G   +  T  + 
Sbjct: 431 DEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLF 490

Query: 197 MDELCKNG 204
           +  L  +G
Sbjct: 491 VKMLSDDG 498



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A   F +M      P+ V +  ++         +    L  +M   G+ PN+ T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 196 IMDELC--KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +++  C    GK+ EA  L D MI  G RPD  TY TL++G C  G  + A  L  SM  
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 254 MGC 256
             C
Sbjct: 162 KNC 164


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 155/297 (52%), Gaps = 58/297 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
           +EAL  F  M +M+P P  V  F ++LG + K KHY T +SL K ++S+ G+ PD +  +
Sbjct: 57  DEALNFFHTMAKMNPLPS-VIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILN 115

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           ++IN  C +  V+ GF VLG +L+    P VVTFT LI                      
Sbjct: 116 VVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKT 175

Query: 115 ---------------VCK--------------------PDAITYNTIIDGLCKQGFVDKA 139
                          +CK                    P+ + Y+T++DGLCK G V +A
Sbjct: 176 GYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEA 235

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L L+M  K +KPN+VTYT +I+G C    W EA  L  EMM  GV P++ + N+++D 
Sbjct: 236 LGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDV 295

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           LCK GK+ +A S++  MI  G  PD FTYN+L+D +CL  +++ A  +F  M S GC
Sbjct: 296 LCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGC 352



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L     +    SL   +   G+ PDL + +IL++  CK G++     V
Sbjct: 249 PNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSV 308

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +G ++     PDV T+ SLI                     + C PD + Y ++I G CK
Sbjct: 309 IGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCK 368

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              ++KA  L  +M      P+VVT+T++I GFC       AK LF+ M   G  PN+ T
Sbjct: 369 IKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQT 428

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             +I+D LCK+  + EA SL   M +  +  +   Y+ +LDG C  G++N A ELF  + 
Sbjct: 429 CAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLP 488

Query: 253 SMG 255
           + G
Sbjct: 489 AKG 491



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++M   P  + S NI++  L K        S+   +   G  PD++T++ L
Sbjct: 269 EAGSLLDEMMKMGVMPD-LQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSL 327

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C   ++     V   ++     PD+V +TSLI   CK                   
Sbjct: 328 IDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGF 387

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+ T+I G C+ G    AKELFL M      PN+ T   ++ G C +   +EA  
Sbjct: 388 TPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALS 447

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M    +  N+V +++I+D +C  GK++ A  L   +   G++ + + Y  +++GF 
Sbjct: 448 LFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFA 507

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G ++ A++L  +ME  GC
Sbjct: 508 KQGLLDKAEDLLSNMEENGC 527



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++         D    +F+ + S G  PD+  ++ LI+ +CK+  ++    +
Sbjct: 319 PDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHL 378

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPDAI-----------------TYNTIIDGLCK 132
           L  +++  FTPDVVT+T+LI    +V +P A                  T   I+DGLCK
Sbjct: 379 LDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCK 438

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  LF  M+  N+  N+V Y+ ++ G C A   N A  LF  +  +G+Q NV  
Sbjct: 439 SQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYA 498

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + ++++   K G +D+A  LL  M ++G  PD+ TYN  + G      +  + +    M 
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMR 558

Query: 253 SMG 255
             G
Sbjct: 559 DKG 561



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 16/192 (8%)

Query: 24  DYMLRMHP--SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +  L MH     P + +  I+L  L K++     LSLF  +  + L  ++  +SI+++  
Sbjct: 412 ELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGM 471

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C  G+++         L SC            K  + +   Y  +I+G  KQG +DKA++
Sbjct: 472 CSAGKLNTALE-----LFSCLPA---------KGLQINVYAYTIMINGFAKQGLLDKAED 517

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L   M++    P+  TY   ++G     +   + +    M D+G   +  T  +I++ L 
Sbjct: 518 LLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLS 577

Query: 202 KNGKMDEASSLL 213
            N   +E    L
Sbjct: 578 TNQGDNELREFL 589



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 131 CKQG---FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GV 186
           CK G    +D+A   F  M   N  P+V+ +T ++        +  A  L  EM    G+
Sbjct: 48  CKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGI 107

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +P+    NV+++ LC    +    S+L  M++ G+ P   T+  L++G C+ G V  A E
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVE 167

Query: 247 LFVSMESMG 255
           L   +E  G
Sbjct: 168 LVDHVEKTG 176


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 153/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP    FN +L  +AK K Y TV SL  +++S G+ PD+YT 
Sbjct: 49  TLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +ILIN FC + R+   F VL +IL+    PD  TFT+LI+ +C                 
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK G  + A  L   M+  N +P+VV YTS+I   C      E
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 174 AKRLFIEMMDQGVQ-----------------------------------PNVVTFNVIMD 198
           A  LF +M+ QG+                                    P+VV F+ ++D
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MI  GV P+  TYN L+DG CL   ++ A ++F +M   G
Sbjct: 288 ALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 139/259 (53%), Gaps = 23/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+      P V ++  ++  L K  + +  + L + +      PD+  ++ +
Sbjct: 157 DALHLFDKMIG-EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSI 215

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           I+  CK  +V+  F +  +++    +PD+ T+TSLI     +C+                
Sbjct: 216 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 275

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD + ++T++D LCK+G + +A ++   M  + V+PNVVTY +++ G C  ++ +EA +
Sbjct: 276 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVK 335

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+  G  PNV+++N +++  CK  +MD+A+ L + M Q  + P+  TYNTL+   C
Sbjct: 336 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XC 394

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A  LF  M + G
Sbjct: 395 HVGRLQDAIALFHEMVAHG 413



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 26/268 (9%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG IT     EA  + D M+ +    P V ++N ++         D  + +F  +   G 
Sbjct: 292 EGKIT-----EAHDVVDMMI-IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 345

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------- 117
            P++ +++ LIN +CK+ R+     +   + +    P+ VT+ +L+  C           
Sbjct: 346 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIAL 405

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD  TY  ++D LCK+  +D+A  L   ++  N+ P++  YT VI G C 
Sbjct: 406 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 465

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A +   A+ +F  +  +G++PNV T+ ++++ LC+ G +DEA+ L   M  +G  PD  T
Sbjct: 466 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCT 525

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNT+  G         A +L   M + G
Sbjct: 526 YNTITQGLLQNKEALRAIQLLQEMLARG 553



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 23/241 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+  +   P V S+N ++    K +  D    LF+ +    L P+  T++ 
Sbjct: 331 DEAVKVFDTMVH-NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++  C +GR+     +   ++     PD+ T+  L+  +CK                  
Sbjct: 390 LMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 448

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   Y  +IDG+C+ G ++ A+++F  +  K ++PNV TYT +I G C     +EA 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 508

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF+EM   G  P+  T+N I   L +N +   A  LL  M+  G   D  T   L++  
Sbjct: 509 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 568

Query: 236 C 236
           C
Sbjct: 569 C 569



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 102/193 (52%), Gaps = 16/193 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+  H   P ++++ I+L  L K  H D  ++L K +  + + PD+  ++I
Sbjct: 400 QDAIALFHEMVA-HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 458

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  C+ G +           R  F+      +S  K  +P+  TY  +I+GLC++G +
Sbjct: 459 VIDGMCRAGELEAA--------RDIFS----NLSS--KGLRPNVRTYTIMINGLCRRGLL 504

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF++M      P+  TY ++ +G     +   A +L  EM+ +G   +V T  ++
Sbjct: 505 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 564

Query: 197 MDELCKNGKMDEA 209
           ++ LC + K+D++
Sbjct: 565 VEMLCDD-KLDQS 576



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + +N ++  + K         L  +M    + P+V T   +I  FC+ N    A  +
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G QP+  TF  ++  LC  GK+ +A  L D MI  G +P+  TY TL++G C 
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 186

Query: 238 TGRVNHAKELFVSMESMGC 256
            G  N A  L  SME   C
Sbjct: 187 VGNTNAAIRLLRSMEQGNC 205



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 40/87 (45%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  ++A   F  M+     P+ V FN ++  + K  +     SL + M   G+ PD +T 
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N L++ FC   R+  A  +   +  +G
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLG 134


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 157/277 (56%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L++   G + +I   +A  +F  M+   P P  V  F  +L   A  + Y+TV+   +
Sbjct: 40  EKLRT---GFLHSIRFEDAFALFFEMVHSQPLPSIVD-FTRLLTATANLRRYETVIYFSQ 95

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLY+ +ILI+CFC+  R+S    VLG++++  + P +VTF SL+   C   
Sbjct: 96  KMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN 155

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            +P+ + YNT+IDGLCK G ++ A EL  +M+ K +  +VVTY 
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYN 215

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G CY+  W++A R+  +MM + + P+VVTF  ++D   K G +DEA  L   MIQ 
Sbjct: 216 TLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            V P+  TYN++++G C+ GR+  AK+ F  M S GC
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGC 312



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L  L  +  +     + + +    + PD+ T + LI+ F K G +     +  
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +++S   P+ VT+ S+I                     K C P+ +TYNT+I G CK  
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+  +LF +M  +    ++ TY ++I G+C       A  +F  M+ + V P+++T  
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++  LC NG+++ A    D M +         YN ++ G C   +V  A ELF  +   
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 255 G 255
           G
Sbjct: 451 G 451



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  ++  M++    P  V+  +I+ G     + YD   + F  + S G FP++ T++ 
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT-FDLMASKGCFPNVVTYNT 321

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK   V  G  +  R+    F  D+               TYNT+I G C+ G +
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADI--------------FTYNTLIHGYCQVGKL 367

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ++F  M  + V P+++T+  ++ G C   +   A   F +M +      +V +N++
Sbjct: 368 RVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIM 427

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK  K+++A  L   +   GV+PDA TY  ++ G C  G    A EL   M+  G
Sbjct: 428 IHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 56/296 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++ML   P P  +    ++   +   ++YDTV+SL K++   GL P++YT SI
Sbjct: 79  DDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSI 138

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LINCF  + RV   F VL +I++    P +VTFT+LI                     + 
Sbjct: 139 LINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARG 198

Query: 116 CKPDAITYNTIIDGLCKQG-----------------------------------FVDKAK 140
           C+PD  TY TII+GLCK G                                    V++A 
Sbjct: 199 CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEAL 258

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F  MK K + P++ TY S+I+G C  + W EA  L  EM    + P++VTFNV++D +
Sbjct: 259 DIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTI 318

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK GK+ EA  +L  M + GV PD  TY++L+ G+ L   V  A++LF +M + GC
Sbjct: 319 CKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGC 374



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM ++    P + ++N ++  L     +    +L   + S  + PD+ T ++
Sbjct: 255 NEALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNV 313

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G+VS    VL  +      PDVVT++SL+                     K 
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 116 CKPDA-----------------------------------ITYNTIIDGLCKQGFVDKAK 140
           CKPD                                    ++YNT+I GLC+ G + +A+
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREAR 433

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF  M      PN+ TY+ ++ GFC    + +A RLF  M     +PN+V +N+++D +
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK+G + +A  L   +   G++P+A  Y T+++G C  G ++ A E F +ME  GC
Sbjct: 494 CKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGC 549



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 139/259 (53%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+      P V ++  ++  L K         L K++   G  P++ T+S +
Sbjct: 186 QAMELFDDMV-ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTI 244

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+   K  RV+    +   +     +PD+ T+ SLI+ +C                    
Sbjct: 245 IDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNI 304

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+N ++D +CK+G V +A+ +   M +  V+P+VVTY+S++ G+   ++  EA++
Sbjct: 305 MPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARK 364

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G +P+V ++N++++  CK  ++DEA  L + MI  G+ P+  +YNTL+ G C
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLC 424

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A+ LF +M + G
Sbjct: 425 QLGSLREARNLFKNMHTNG 443



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M+    +P  VS +N ++  L +        +LFK +++ G  P+L+T+SI
Sbjct: 395 DEAKQLFNEMIHQGLTPNNVS-YNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSI 453

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G     F +  R ++S ++             KP+ + YN +ID +CK G +
Sbjct: 454 LLDGFCKQGYFGKAFRLF-RAMQSTYS-------------KPNLVMYNILIDAMCKSGNL 499

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A++LF ++  K ++PN   YT++I G C     +EA   F  M + G  P+ +++NVI
Sbjct: 500 RDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVI 559

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +     +     A  L+  M   G   D  T
Sbjct: 560 IRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 152/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP    FN +L  +AK K Y TV SL  +++S G+ PD+YT 
Sbjct: 47  TLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +ILIN FC + R    F VL +IL+    PD  TFT+LI+ +C                 
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY T+I+GLCK G  + A  L   M+  N +P+VV YTS+I   C      E
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 174 AKRLFIEMMDQGVQ-----------------------------------PNVVTFNVIMD 198
           A  LF +M+ QG+                                    P+VV F+ ++D
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MI  GV P+  TYN L+DG CL   ++ A ++F +M   G
Sbjct: 286 ALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 140/259 (54%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+      P V ++  ++  L K  + +  + L + +      PD+  ++ +
Sbjct: 155 DALHLFDKMIG-EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSI 213

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           I+  CK  +V+  F +  +++    +PD+ T+TSLI     +C+                
Sbjct: 214 IDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKI 273

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD + ++T++D LCK+G + +A ++   M  + V+PNVVTY +++ G C  ++ +EA +
Sbjct: 274 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVK 333

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+  G  PNV+++N +++  CK  +MD+A+ L + M Q  + P+  TYNTL+ G C
Sbjct: 334 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLC 393

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A  LF  M + G
Sbjct: 394 HVGRLQDAIALFHEMVAHG 412



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+    SP  + ++  ++  L     +  V +L  ++ ++ + PD+   S +
Sbjct: 225 EAFNLFSKMVGQGISPD-IFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 283

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------------IKV--------C 116
           ++  CK G+++    V+  ++     P+VVT+ +L             +KV         
Sbjct: 284 VDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 343

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ I+YNT+I+G CK   +DKA  LF +M  K + PN VTY +++ G C+     +A  
Sbjct: 344 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIA 403

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+  G  P++ T+ +++D LCK   +DEA +LL  +    + PD   Y  ++DG C
Sbjct: 404 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMC 463

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A+++F ++ S G
Sbjct: 464 RAGELEAARDIFSNLSSKG 482



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 128/269 (47%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG IT     EA  + D M+ +    P V ++N ++         D  + +F  +   G 
Sbjct: 290 EGKIT-----EAHDVVDMMI-IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 343

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            P++ +++ LIN +CK+ R+     +   + +    P+ VT+ +L+  +C          
Sbjct: 344 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIA 403

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD  TY  ++D LCK+  +D+A  L   ++  N+ P++  YT VI G C
Sbjct: 404 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMC 463

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A +   A+ +F  +  +G++PNV T+ ++++ LC+ G +DEA+ L   M  +G  PD  
Sbjct: 464 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGC 523

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNT+  G         A +L   M + G
Sbjct: 524 TYNTITQGLLQNKEALRAIQLLQEMLARG 552



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 102/193 (52%), Gaps = 16/193 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+  H   P ++++ I+L  L K  H D  ++L K +  + + PD+  ++I
Sbjct: 399 QDAIALFHEMVA-HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 457

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  C+ G +           R  F+      +S  K  +P+  TY  +I+GLC++G +
Sbjct: 458 VIDGMCRAGELEAA--------RDIFS----NLSS--KGLRPNVRTYTIMINGLCRRGLL 503

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF++M      P+  TY ++ +G     +   A +L  EM+ +G   +V T  ++
Sbjct: 504 DEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 563

Query: 197 MDELCKNGKMDEA 209
           ++ LC + K+D++
Sbjct: 564 VEMLCDD-KLDQS 575



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 67/139 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + +N ++  + K         L  +M    + P+V T   +I  FC+ N    A  +
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G+QP+  TF  ++  LC  GK+ +A  L D MI  G +P+  TY TL++G C 
Sbjct: 125 LAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 184

Query: 238 TGRVNHAKELFVSMESMGC 256
            G  N A  L  SME   C
Sbjct: 185 VGNTNAAIRLLRSMEQGNC 203



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  ++A   F  M+     P+ V FN ++  + K  +     SL + M   G+ PD +T 
Sbjct: 46  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N L++ FC   R   A  +   +  +G
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLG 132


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 157/277 (56%), Gaps = 25/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L++   G + +I   +A  +F  M+   P P  V  F  +L   A  + Y+TV+   +
Sbjct: 40  EKLRT---GFLHSIRFEDAFALFFEMVHSQPLPSIVD-FTRLLTATANLRRYETVIYFSQ 95

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLY+ +ILI+CFC+  R+S    VLG++++  + P +VTF SL+   C   
Sbjct: 96  KMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN 155

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            +P+ + YNT+IDGLCK G ++ A EL  +M+ K +  +VVTY 
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYN 215

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G CY+  W++A R+  +MM + + P+VVTF  ++D   K G +DEA  L   MIQ 
Sbjct: 216 TLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            V P+  TYN++++G C+ GR+  AK+ F  M S GC
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGC 312



 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 155/277 (55%), Gaps = 26/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL++    ++  I  ++A  +F  ML+  P P  V  F  +L  +AK   +D V+ L+ 
Sbjct: 574 ERLRN----ELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDIVIYLYH 628

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-- 117
           ++ + G+  DLY+ +ILI+CFC+  R+S    +LG++++  F P +VT  SL+   C+  
Sbjct: 629 KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGN 688

Query: 118 ------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                             P+ + YNT+I+GLCK   ++ A E+F  M+ K ++ + VTY 
Sbjct: 689 RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYN 748

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G   +  W +A RL  +M+ + + PNV+ F  ++D   K G + EA +L   MI+ 
Sbjct: 749 TLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 808

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            V P+ FTYN+L++GFC+ G +  AK +F  M S GC
Sbjct: 809 SVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGC 845



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +F Y +          ++N ++  L+ +  +     L + +    + P++   + 
Sbjct: 726 NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G +     +   ++R    P+V T+ SLI                     K 
Sbjct: 785 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYNT+I G CK   V+   +LF +M  + +  +  TY ++I G+C A   N A+
Sbjct: 845 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 904

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M+D GV P++VT+N+++D LC NGK+++A  +++ + +  +  D  TYN ++ G 
Sbjct: 905 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 964

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C T ++  A  LF S+   G
Sbjct: 965 CRTDKLKEAWCLFRSLTRKG 984



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 27/244 (11%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIML------GCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
            EA  ++  M+R     P V ++N ++      GCL   K+      +F  + S G FPD+
Sbjct: 797  EARNLYKEMIR-RSVVPNVFTYNSLINGFCIHGCLGDAKY------MFDLMVSKGCFPDV 849

Query: 72   YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
             T++ LI  FCK  RV  G  +   +          T+  L+     DA TYNT+I G C
Sbjct: 850  VTYNTLITGFCKSKRVEDGMKLFCEM----------TYQGLV----GDAFTYNTLIHGYC 895

Query: 132  KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            + G ++ A+++F +M D  V P++VTY  ++   C      +A  +  ++    +  +++
Sbjct: 896  QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 955

Query: 192  TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            T+N+I+  LC+  K+ EA  L   + + GV+PDA  Y T++ G C  G    A +L   M
Sbjct: 956  TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 1015

Query: 252  ESMG 255
            +  G
Sbjct: 1016 KEDG 1019



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L  L  +  +     + + +    + PD+ T + LI+ F K G +     +  
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +++S   P+ VT+ S+I                     K C P+ +TYNT+I G CK  
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+  +LF +M  +    ++ TY ++I G+C       A  +F  M+ + V P+++T  
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++  LC NG+++ A    D M +         YN ++ G C   +V  A ELF  +   
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450

Query: 255 G 255
           G
Sbjct: 451 G 451



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  ++  M++    P  V+  +I+ G     + YD   + F  + S G FP++ T++ 
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT-FDLMASKGCFPNVVTYNT 321

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK   V  G  +  R+    F  D+               TYNT+I G C+ G +
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADI--------------FTYNTLIHGYCQVGKL 367

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ++F  M  + V P+++T+  ++ G C   +   A   F +M +      +V +N++
Sbjct: 368 RVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIM 427

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK  K+++A  L   +   GV+PDA TY  ++ G C  G    A EL   M+  G
Sbjct: 428 IHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 21/147 (14%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++N ++    +    +    +F R+   G+ PD+ T++IL++C C  G++    V++  +
Sbjct: 886  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 945

Query: 98   LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             +S    D++T+  +I                     K  KPDAI Y T+I GLC++G  
Sbjct: 946  QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 1005

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIR 163
             +A +L  +MK+    P+   Y   +R
Sbjct: 1006 READKLCRRMKEDGFMPSERIYDETLR 1032



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 102/282 (36%), Gaps = 65/282 (23%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL IF +M+    +P  ++   I+L  L  N   ++ L  F  +  +  +  +  ++I+I
Sbjct: 370 ALDIFCWMVSRRVTPDIITHC-ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMI 428

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT----------------SLIKVCKPDAI- 121
           +  CK  +V   + +  R+      PD  T+T                 LI+  K + I 
Sbjct: 429 HGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--------VTYTSVIRGFCYAN--- 169
              N   D L +    +K   L L+   +  K N         + ++S ++GF   +   
Sbjct: 489 CQMNAEDDHLEEHSSSNKEISLSLREIWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLL 548

Query: 170 -----------------------------------DWNEAKRLFIEMMDQGVQPNVVTFN 194
                                               +++A  LF EM+     P++V F 
Sbjct: 549 LERGNNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFT 608

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            ++  + K  K D    L   M   G+  D +++  L+  FC
Sbjct: 609 RVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFC 650


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 151/298 (50%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL  F+ ML   P PP    FN +L  +AK KH+ T+LSL ++++S G+ PD+YT 
Sbjct: 50  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +I+IN  C + RV   F  L +IL+    PD  TFT+LI+ +C                 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 117 ---KPDAITYNTIIDGLCKQG-----------------------------------FVDK 138
              +P+ +TY T+I+GLCK G                                    V +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F +M  K + PN+VTY S+I G C   +W     L  EM+D  + P+V T N ++D
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G + EA  ++D+MI  GV P+  TYN L+DG CL   V+ A ++F +M    C
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF  M+    SP  V+ +N ++  L K   +  V +L   +  + + PD++T + +
Sbjct: 228 EAFNIFSEMITKGISPNIVT-YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G V+    V+  ++     P+VVT+ +L+                     K C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + I+YNT+I+G CK   VDKA  LF +M  + + PN VTY ++I G C+     +A  
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 406

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P++VT+  + D LCKN  +D+A +LL  +      PD   Y T+LDG C
Sbjct: 407 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 466

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 467 RAGELEDARDLFSNLSSKG 485



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+     P  V+   +M G   +N+  D  + +F  +       ++ +++ L
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE-VDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK+  V     +   + R   TP+ VT+ +LI  +C                    
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY T+ D LCK   +DKA  L   ++  N  P++  YT+++ G C A +  +A+ 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+QPNV T+N+++  LCK G + EAS L   M ++G  P+  TYN +  GF 
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536

Query: 237 LTGRVNHAKELFVSMESMG 255
                    EL   M + G
Sbjct: 537 RNNEALRTIELLEEMLARG 555



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 23/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +FD M+        V S+N ++    K +  D  + LF+ ++   L P+  T++ LI
Sbjct: 334 AVKVFDTMVH-KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 392

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  C +GR+     +   ++     PD+VT+ +L   +CK                    
Sbjct: 393 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 452

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   Y TI+DG+C+ G ++ A++LF  +  K ++PNV TY  +I G C      EA +L
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F EM   G  PN  T+N+I     +N +      LL+ M+  G   D  T  TLL G 
Sbjct: 513 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST-TTLLVGM 569



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R   +P  V+ +N ++  L         +SLF  + + G  PDL T+  
Sbjct: 367 DKAMYLFEEMSRQELTPNTVT-YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L +  CK   +     +L  I  S + PD+  +T+++                     K 
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYN +I GLCKQG + +A +LF +M      PN  TY  + RGF   N+     
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            L  EM+ +G   +V T  +++  L  +G
Sbjct: 546 ELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 37.4 bits (85), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  +EA   F  M+ +   P+ V FN ++  + K        SL   M   G+ PD +T 
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++  C   RV+ A      +  +G
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLG 135


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ +LR +P+PP +  F  +LG L K+KHY TVLSLF+++   G+ P+    +IL
Sbjct: 53  DAVSLFNCLLRQNPTPPDME-FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNIL 111

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           INCFC++G +   F VL +IL+  + PD +T  + IK  C                    
Sbjct: 112 INCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGF 171

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKM--------------------KDKNV----- 151
             D ++Y T+I+GLCK G    A EL  ++                    KDKNV     
Sbjct: 172 HLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFD 231

Query: 152 ----------KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
                       N+VTY+++I GFC      +A  LF +M  + + P+V TFN+++D  C
Sbjct: 232 LYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFC 291

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G++ EA + L +M++ G++PD  TYN+L+DG+CL   VN AK +  +M   G
Sbjct: 292 KEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 136/253 (53%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    S   V+   ++ G     K  D +  LF ++ S  + PD+YT +I
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI-GLFNKMTSENINPDVYTFNI 285

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------- 121
           L++ FCK GRV      L  +++    PD+VT+ SL+   C  + +              
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 +YN +I+G CK   VD+A +LF +M  K + PNV+TY S+I G C +   + A 
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL 405

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M D+G QP+++T++ I+D LCKN  +D+A +LL  +   G+RP+ +TY  L+DG 
Sbjct: 406 ELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465

Query: 236 CLTGRVNHAKELF 248
           C  GR+  A+ +F
Sbjct: 466 CKGGRLEDARNIF 478



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++    K K  D  + LFK ++   +FP++ T++ LI+  CK GR+S+   ++ 
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +                +  +PD ITY++I+D LCK   VDKA  L +K+KD+ ++PN+
Sbjct: 410 LMHD--------------RGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNM 455

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TYT +I G C      +A+ +F +++ +G    V T+ V++   C +G  DEA SLL  
Sbjct: 456 YTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSK 515

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M  +   PDA TY  ++         + A++L   M + G
Sbjct: 516 MKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++    K        +    +   G+ PD+ T++ L++ +C +  V+    +
Sbjct: 278 PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSI 337

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  +     T  V ++  +I   CK                    P+ ITYN++IDGLCK
Sbjct: 338 LNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCK 397

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A EL   M D+  +P+++TY+S++   C  +  ++A  L I++ DQG++PN+ T
Sbjct: 398 SGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYT 457

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D LCK G++++A ++ + ++  G      TY  ++ GFC  G  + A  L   M+
Sbjct: 458 YTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMK 517

Query: 253 SMGC 256
              C
Sbjct: 518 DNSC 521



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 66/262 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++ +L  L KN   D  ++L  +L   G+ P++YT++ILI+  CK GR+     +
Sbjct: 418 PDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNI 477

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
              +L   +   V T+T +I+                      C PDAITY  II  L  
Sbjct: 478 FEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFD 537

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA------------------NDWNE- 173
           +   DKA++L  +M  + +  + + Y S    F  A                   +W + 
Sbjct: 538 KDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKL 597

Query: 174 -AKRLFIE-------MMDQGVQ-PNVV-----------------TFNVIMDELCKNGKMD 207
             +R++ +       M D+ V+ P+V+                 T+ V++   C +G  D
Sbjct: 598 LLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFD 657

Query: 208 EASSLLDLMIQHGVRPDAFTYN 229
           E+ +LL  M  +G  PDA TY+
Sbjct: 658 ESLALLSKMEVNGCIPDAVTYD 679



 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 39/87 (44%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           ND  +A  LF  ++ Q   P  + F  I+  L K+       SL   M   G++P+   +
Sbjct: 49  NDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNF 108

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N L++ FC  G +  A  +   +  MG
Sbjct: 109 NILINCFCQLGLIPFAFSVLAKILKMG 135


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 151/298 (50%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL  F+ ML   P PP    FN +L  +AK KH+ T+LSL ++++S G+ PD+YT 
Sbjct: 50  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +I+IN  C + RV   F  L +IL+    PD  TFT+LI+ +C                 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 117 ---KPDAITYNTIIDGLCKQG-----------------------------------FVDK 138
              +P+ +TY T+I+GLCK G                                    V +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F +M  K + PN+VTY S+I G C   +W     L  EM+D  + P+V T N ++D
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G + EA  ++D+MI  GV P+  TYN L+DG CL   V+ A ++F +M    C
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF  M+    SP  V+ +N ++  L K   +  V +L   +  + + PD++T + +
Sbjct: 228 EAFNIFSEMITKGISPNIVT-YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G V+    V+  ++     P+VVT+ +L+                     K C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + I+YNT+I+G CK   VDKA  LF +M  + + PN VTY ++I G C+     +A  
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 406

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P++VT+  + D LCKN  +D+A +LL  +      PD   Y T+LDG C
Sbjct: 407 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 466

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 467 RAGELEDARDLFSNLSSKG 485



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+     P  V+   +M G   +N+  D  + +F  +       ++ +++ L
Sbjct: 298 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE-VDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK+  V     +   + R   TP+ VT+ +LI  +C                    
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY T+ D LCK   +DKA  L   ++  N  P++  YT+++ G C A +  +A+ 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+QPNV T+N+++  LCK G + EAS L   M ++G  P+  TYN +  GF 
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536

Query: 237 LTGRVNHAKELFVSMESMG 255
                    EL   M + G
Sbjct: 537 RNNEALRTIELLEEMLARG 555



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 23/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +FD M+        V S+N ++    K +  D  + LF+ ++   L P+  T++ LI
Sbjct: 334 AVKVFDTMVH-KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 392

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  C +GR+     +   ++     PD+VT+ +L   +CK                    
Sbjct: 393 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 452

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   Y TI+DG+C+ G ++ A++LF  +  K ++PNV TY  +I G C      EA +L
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F EM   G  PN  T+N+I     +N +      LL+ M+  G   D  T  TLL G 
Sbjct: 513 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST-TTLLVGM 569



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R   +P  V+ +N ++  L         +SLF  + + G  PDL T+  
Sbjct: 367 DKAMYLFEEMSRQELTPNTVT-YNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L +  CK   +     +L  I  S + PD+  +T+++                     K 
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYN +I GLCKQG + +A +LF +M      PN  TY  + RGF   N+     
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            L  EM+ +G   +V T  +++  L  +G
Sbjct: 546 ELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           N  +EA   F  M+ +   P+ V FN ++  + K        SL   M   G+ PD +T 
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++  C   RV+ A      +  +G
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLG 135


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/267 (37%), Positives = 152/267 (56%), Gaps = 28/267 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A C+F+ ML +   P  V++ ++++  L K         L + +   G  PD+ T + 
Sbjct: 354 EKAKCLFNEMLDVGIQPD-VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTT 412

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+   C   R+S    +  ++ +    P+VVT  +L+K                      
Sbjct: 413 LVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDT 472

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                 CKP+AI+Y+ IIDGLCK G  D+A+ELF +MK   V P+V++YTS+I GFC + 
Sbjct: 473 SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSG 532

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            W +AK LF EM+D GVQP+V TF+V++D LCK GK+ EA+ LL++MIQ G  P+  TY 
Sbjct: 533 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 592

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           TL+ G C+  R++ A +LF+ M+ +GC
Sbjct: 593 TLVKGLCMNDRISEATQLFMKMQKLGC 619



 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 28/267 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A C+F+ ML +      V++ ++++  L K         L + +   G   D+ T+S 
Sbjct: 173 EKAKCLFNEMLDVGIRSD-VTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYST 231

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LI   C   R+S    +   + +    PD + + +L+K                      
Sbjct: 232 LIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDT 291

Query: 115 -----VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                 CKP  I+Y+ IIDGLCK    D+A+ELF +MK + + P+V++YT++I GFC + 
Sbjct: 292 GRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSG 351

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            W +AK LF EM+D G+QP+V T +V++D LCK GK+ EA+ LL+++IQ G  PD  T  
Sbjct: 352 KWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCT 411

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           TL+ G C+  R++ A +LF+ M+ +GC
Sbjct: 412 TLVKGLCMKHRISKATQLFLKMQKLGC 438



 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 135/250 (54%), Gaps = 27/250 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++  +++    K         L + +   G   D+ T+S LI   C   R+S    +
Sbjct: 8   PDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------------VCKPDAITYNTI 126
              + +    PD + + +L+K                            CKP  ++Y+ I
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           IDGLCK    D+A+ELF +MK + + P+V++YTS+I GFC +  W +AK LF EM+D G+
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           + +V T ++++D LCK GK+ EA+ LL++MIQ G   D  TY+TL+ G C+  R++ A  
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATR 247

Query: 247 LFVSMESMGC 256
           LF+SM+ +GC
Sbjct: 248 LFMSMQKLGC 257



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 128/249 (51%), Gaps = 27/249 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S++I++  L K    D    LFK + + G+ PD+ +++ LI+ FC+ G+      +
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++     PDV TF+ LI +                     C P+ +TY T++ GLC 
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 600

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ----- 187
              + +A +LF+KM+     P+VVTY ++++G C   +   A  L  +M+    Q     
Sbjct: 601 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 660

Query: 188 -PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+V+++++I+D LCK+G+ DEA  L   M   GV P+  +Y +L+ GFC +G++  AK 
Sbjct: 661 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 720

Query: 247 LFVSMESMG 255
           LF  M   G
Sbjct: 721 LFNEMVDQG 729



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 29/247 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++    ++  +     LF  +   G+ PD+ T S+LI+  CK G+V     +
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +++    P+ VT+T+L+K                      C PD +TY T++ GLC+
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635

Query: 133 QGFVDKAKELFLKMKD------KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            G +  A EL  KM         N KP+V++Y+ +I G C     +EA+ LF EM   GV
Sbjct: 636 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 695

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PNV+++  ++   C++GK+++A  L + M+  GV+ +A TY+ ++ GFC  G+++ A  
Sbjct: 696 IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA-- 753

Query: 247 LFVSMES 253
           LF  ME+
Sbjct: 754 LFQKMEA 760



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 20/228 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++I++  L K++  D    LFK + + G+ PD+ +++ LI+ FC+ G+      +
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L      DV T + LI              D LCK+G V +A EL   M  +    
Sbjct: 179 FNEMLDVGIRSDVTTSSMLI--------------DILCKEGKVIEANELLEVMIQRGCIL 224

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VTY+++I+G C  +  +EA RLF+ M   G +P+ + +  +M  LC+ G ++ A  L 
Sbjct: 225 DIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLH 284

Query: 214 DLMI----QHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+    ++G+  +P   +Y+ ++DG C   R + A+ELF  M++ G
Sbjct: 285 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQG 332



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 20/196 (10%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           G+ PD+ T  +LI+ FCK G+V     +L  +++              + C  D +TY+T
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQ--------------RGCILDIVTYST 50

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GLC +  + +A +LF+ MK    +P+ + Y ++++G C     N A  L  EM++  
Sbjct: 51  LIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDT 110

Query: 186 VQ------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            Q      P +V++++I+D LCK+ + DEA  L   M   G+ PD  +Y +L+ GFC +G
Sbjct: 111 SQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSG 170

Query: 240 RVNHAKELFVSMESMG 255
           +   AK LF  M  +G
Sbjct: 171 KWEKAKCLFNEMLDVG 186



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 62/286 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR-LNSTGLF-----PD 70
           +EA  +F  M ++   P  ++   +M G L +  + +T L L +  LN TG +     P 
Sbjct: 243 SEATRLFMSMQKLGCRPDAIAYGTLMKG-LCQTGNINTALQLHQEMLNDTGRYGIKCKPT 301

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           L ++SI+I+  CK  R      +   +      PDV              I+Y T+I G 
Sbjct: 302 LISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDV--------------ISYTTLIHGF 347

Query: 131 CKQGFVDKAKELFLKMKDKNVK-----------------------------------PNV 155
           C  G  +KAK LF +M D  ++                                   P+V
Sbjct: 348 CLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDV 407

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VT T++++G C  +  ++A +LF++M   G  PNVVT   +M  LC++G +  A  L   
Sbjct: 408 VTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKN 467

Query: 216 MIQ----HGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+     +G+  +P+A +Y+ ++DG C  GR + A+ELF  M+++G
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 513



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 53/76 (69%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  G+QP+V T  V++D  CK GK+ EA+ LL++M+Q G   D  TY+TL+ G C+  R
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 241 VNHAKELFVSMESMGC 256
           ++ A +LF+SM+ +GC
Sbjct: 61  ISEATQLFMSMKKLGC 76


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 61/304 (20%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M+R  P P  V  F+     +A+ K ++ VL   K
Sbjct: 58  ERLRSG----IVDIKKDDAIALFQEMIRSRPLPGLVD-FSRFFSAIARTKQFNLVLDFCK 112

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------- 113
           +L   G+  ++YT +I+INCFC+  +    + VLG++++  + PD  TF +LI       
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEG 172

Query: 114 KV--------------CKPDAITYN----------------------------------- 124
           KV              C+PD +TYN                                   
Sbjct: 173 KVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYS 232

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIID LC+ G +D A  LF +M+ K +K +VVTY S++RG C A  WN+   L  +M+ +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TFNV++D   K GK+ EA+ L   MI  G+ P+  TYNTL+DG+C+  R++ A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 245 KELF 248
             + 
Sbjct: 353 NNML 356



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 23/253 (9%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           FD + +M        V +++ ++  L ++   D  +SLFK + + G+   + T++ L+  
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPD 119
            CK G+ + G ++L  ++     P+V+TF  L+ V                       P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ITYNT++DG C Q  + +A  +   M      P++VT+TS+I+G+C     ++  ++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +  +G+  N VT+++++   C++GK+  A  L   M+ HGV PD  TY  LLDG C  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 240 RVNHAKELFVSME 252
           ++  A E+F  ++
Sbjct: 453 KLEKALEIFEDLQ 465



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P  ++FN ++  L         + L  R+   G  PD+ T++ ++N  C+ G  S  F 
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFD 214

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +L ++       DV T++++I                     K  K   +TYN+++ GLC
Sbjct: 215 MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  +    L   M  + + PNV+T+  ++  F       EA  L+ EM+ +G+ PN++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +MD  C   ++ EA+++LDLM+++   PD  T+ +L+ G+C+  RV+   ++F ++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 252 ESMG 255
              G
Sbjct: 395 SKRG 398



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  + D M+R   SP  V+  +++ G C+ K    D  + +F+ ++  GL  +  T+S
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK--RVDDGMKVFRNISKRGLVANAVTYS 407

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL+  FC+ G++          L      ++V+   L     PD +TY  ++DGLC  G 
Sbjct: 408 ILVQGFCQSGKIK---------LAEELFQEMVSHGVL-----PDVMTYGILLDGLCDNGK 453

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++KA E+F  ++   +   +V YT++I G C      +A  LF  +  +GV+PNV+T+ V
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LCK G + EA+ LL  M + G  P+  TYNTL+      G +  + +L   M+S G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 24/200 (12%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    ++        LF+ + S G+ PD+ T+ IL++  C  G++     +   +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S     +V +T++I                     K  KP+ +TY  +I GLCK+G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  KM++    PN  TY ++IR      D   + +L  EM   G   +  +  ++
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584

Query: 197 MDELCKNGKMDEASSLLDLM 216
           +D L  +G++D+  S LD++
Sbjct: 585 IDMLL-SGELDK--SFLDML 601



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 13/159 (8%)

Query: 108 TFTSLIKVCKPDAITYNTIIDG-LC-----KQGFVDKAKE----LFLKMKDKNVKPNVVT 157
           T +S +  C+ D   +++I +G +C     + G VD  K+    LF +M      P +V 
Sbjct: 34  TISSFLSSCERD---FSSITNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPGLVD 90

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           ++           +N       ++   G+  N+ T N++++  C+  K   A S+L  ++
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 150

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  PD  T+NTL++G CL G+V+ A  L   M   GC
Sbjct: 151 KLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 156/300 (52%), Gaps = 57/300 (19%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +I+ ++AL  F  MLRM+P P  V  F   LG +AK K Y TV+SL  +++  G+  ++Y
Sbjct: 70  SISIDDALASFYRMLRMNPRPS-VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVY 128

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
           + +ILINC C++  V     VLG++ +    PD +TF +LI                   
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN----------------- 154
             +  +PD I+Y+T+I+GLCK G    A +L  KM++K  KPN                 
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV 248

Query: 155 ------------------VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
                             VVTY++++ GFC     NEA  LF EM+ + V PN VTF ++
Sbjct: 249 NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTIL 308

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK G + EA  + + M + G  P+A+TYN L+DG+CL  +++ A+++   M   GC
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGC 368



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +   M ++   P  ++ FN ++            + LF  +   G  PD+ ++S +I
Sbjct: 146 AISVLGKMFKLGIQPDAIT-FNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVI 204

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK-------------------- 117
           N  CK G  S    +L ++      P++V +T++I  +CK                    
Sbjct: 205 NGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIP 264

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TY+TI+ G C  G +++A  LF +M  +NV PN VT+T ++ G C     +EA+ +
Sbjct: 265 PDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCV 324

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M  +G +PN  T+N +MD  C N +MDEA  +LD+M+  G  P   +YN L++G+C 
Sbjct: 325 FEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCK 384

Query: 238 TGRVNHAKELFVSM 251
             R++ AK L V M
Sbjct: 385 RRRLDEAKSLLVEM 398



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 21/237 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +++ +L       H +    LF  +    + P+  T +IL++  CK G VS    
Sbjct: 264 PPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARC 323

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           V   + +    P+  T+ +L+                     K C P   +YN +I+G C
Sbjct: 324 VFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYC 383

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+  +D+AK L ++M +K + P+ VTY+++++G C      EA  LF EM   G+ P+++
Sbjct: 384 KRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLM 443

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T++ ++D LCK+G +DEA  LL  M +  + PD   YN L++G  + G++  AKELF
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELF 500



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA C+F+ M +   + P   ++N ++     N   D    +   +   G  P +++++I
Sbjct: 319 SEARCVFEAMTK-KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNI 377

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN +CK  R+     +L  +     TPD VT+++L++ +C+                  
Sbjct: 378 LINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TY+T++DGLCK G +D+A +L   M++  ++P++V Y  +I G   A     AK
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAK 497

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF ++   G+QP + T+ +++  L K G  DEA  L   M   G  P++ +YN ++ GF
Sbjct: 498 ELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGF 557



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M+      P V S+NI++    K +  D   SL   ++   L PD  T+S 
Sbjct: 354 DEAQKVLDIMVD-KGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYST 412

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L+   C++GR      +   +  S   PD++T+++L+  +CK                  
Sbjct: 413 LMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK 472

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD + YN +I+G+   G ++ AKELF K+    ++P + TYT +I+G       +EA 
Sbjct: 473 IEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAY 532

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G  PN  ++NVI+    +N     A  L+D M+      D+ T+  LLD
Sbjct: 533 ELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP ++ F  +L  + K KHY TVLSL  +++S G+ P++YT 
Sbjct: 48  TLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           +ILIN FC + R+   F VL +IL+                                   
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 100 SCFTPDVVTFTSLI----KV-----------------CKPDAITYNTIIDGLCKQGFVDK 138
             F P+VVT+ +LI    KV                 C+PD + Y +IID LCK   V +
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  + + P++ TY S+I   C   +W     L  EM++  + PNVV F+ ++D
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MI+ GV P+  TYN L+DG CL   ++ A ++F +M   G
Sbjct: 287 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 343



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 138/259 (53%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  M+    SP  + ++N ++  L     +  V +L   + ++ + P++   S +
Sbjct: 226 QAFNLFSEMIHQGISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK-- 117
           ++  CK G+V     V+  +++    P+VVT+ +L+                   VCK  
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 344

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ++Y+T+I+G CK   ++KA  LF +M  K + PN VTY++++ G C+     +A  
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 404

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P+ V++ +++D LCKN ++DEA +LL  +    + PD   Y  ++DG C
Sbjct: 405 LFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMC 464

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 465 RAGELEAARDLFSNLSSKG 483



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++     P V ++N ++         D  + +F  +   G  PD+ ++S L
Sbjct: 296 EAHDVVDMMIK-RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 354

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK+ R+     +   + R    P+ VT+++L+  +C                    
Sbjct: 355 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 414

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ++Y  ++D LCK   +D+A  L   ++  N+ P++  YT VI G C A +   A+ 
Sbjct: 415 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 474

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+ PNV T+ ++++ LC+ G + EAS L   M + G  P+  TYN +  GF 
Sbjct: 475 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 534

Query: 237 LTGRVNHAKELFVSMESMG 255
                    +L   M + G
Sbjct: 535 RNNETLRGIQLLQEMLARG 553



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S++ ++    K +  +  + LF+ +    L P+  T+S 
Sbjct: 330 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++  C +GR+     +   ++     PD V++  L+  +CK                  
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   Y  +IDG+C+ G ++ A++LF  +  K + PNV TYT +I G C      EA 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM  +G  PN  T+N+I     +N +      LL  M+  G   D  T   L++  
Sbjct: 509 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 568

Query: 236 CLTGRVNHAKELF 248
              G     K++ 
Sbjct: 569 SDDGLDQSVKQIL 581



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 22/222 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ M R    P  V+   +M G     +  D + +LF  + + G  PD  ++ IL
Sbjct: 366 KAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI-ALFHEMVTRGQIPDFVSYCIL 424

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK  R+     +L  I  S   PD+  +T +I                     K  
Sbjct: 425 LDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 484

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  TY  +I+GLC+QG + +A +LF +MK K   PN  TY  + RGF   N+     +
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 544

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           L  EM+ +G   +V T  V+++ L  +G       +L   +Q
Sbjct: 545 LLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 586



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 108 TFTSLIKVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           +F  ++ +  P +I  +  ++  + K         L  +M    + PN+ T   +I  FC
Sbjct: 55  SFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC 114

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           +      A  +  +++  G QPN+ TFN ++  LC  GK+ E   L D MI  G +P+  
Sbjct: 115 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVV 174

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY TL++G C  G  + A  L  SME   C
Sbjct: 175 TYGTLINGLCKVGSTSAAIRLLRSMEQGNC 204


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 57/297 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP ++ F  +L  + K KHY TVLSL  +++S G+ P++YT 
Sbjct: 39  TLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           +ILIN FC + R+   F VL +IL+                                   
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 100 SCFTPDVVTFTSLI----KV-----------------CKPDAITYNTIIDGLCKQGFVDK 138
             F P+VVT+ +LI    KV                 C+PD + Y +IID LCK   V +
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  + + P++ TY S+I   C   +W     L  EM++  + PNVV F+ ++D
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK GK+ EA  ++D+MI+ GV P+  TYN L+DG CL   ++ A ++F +M   G
Sbjct: 278 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 138/259 (53%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  M+    SP  + ++N ++  L     +  V +L   + ++ + P++   S +
Sbjct: 217 QAFNLFSEMIHQGISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK-- 117
           ++  CK G+V     V+  +++    P+VVT+ +L+                   VCK  
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 335

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ++Y+T+I+G CK   ++KA  LF +M  K + PN VTY++++ G C+     +A  
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIA 395

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +G  P+ V++ +++D LCKN ++DEA +LL  +    + PD   Y  ++DG C
Sbjct: 396 LFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMC 455

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++LF ++ S G
Sbjct: 456 RAGELEAARDLFSNLSSKG 474



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++     P V ++N ++         D  + +F  +   G  PD+ ++S L
Sbjct: 287 EAHDVVDMMIK-RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 345

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK+ R+     +   + R    P+ VT+++L+  +C                    
Sbjct: 346 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 405

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ++Y  ++D LCK   +D+A  L   ++  N+ P++  YT VI G C A +   A+ 
Sbjct: 406 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 465

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+ PNV T+ ++++ LC+ G + EAS L   M + G  P+  TYN +  GF 
Sbjct: 466 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 525

Query: 237 LTGRVNHAKELFVSMESMG 255
                    +L   M + G
Sbjct: 526 RNNETLRGIQLLQEMLARG 544



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M+      P V S++ ++    K +  +  + LF+ +    L P+  T+S 
Sbjct: 321 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++  C +GR+     +   ++     PD V++  L+  +CK                  
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   Y  +IDG+C+ G ++ A++LF  +  K + PNV TYT +I G C      EA 
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM  +G  PN  T+N+I     +N +      LL  M+  G   D  T   L++  
Sbjct: 500 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 559

Query: 236 CLTGRVNHAKELF 248
              G     K++ 
Sbjct: 560 SDDGLDQSVKQIL 572



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 22/222 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ M R    P  V+   +M G     +  D + +LF  + + G  PD  ++ IL
Sbjct: 357 KAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI-ALFHEMVTRGQIPDFVSYCIL 415

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK  R+     +L  I  S   PD+  +T +I                     K  
Sbjct: 416 LDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 475

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  TY  +I+GLC+QG + +A +LF +MK K   PN  TY  + RGF   N+     +
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 535

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           L  EM+ +G   +V T  V+++ L  +G       +L   +Q
Sbjct: 536 LLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFLQ 577



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 108 TFTSLIKVCKPDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           +F  ++ +  P +I  +  ++  + K         L  +M    + PN+ T   +I  FC
Sbjct: 46  SFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC 105

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           +      A  +  +++  G QPN+ TFN ++  LC  GK+ E   L D MI  G +P+  
Sbjct: 106 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVV 165

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY TL++G C  G  + A  L  SME   C
Sbjct: 166 TYGTLINGLCKVGSTSAAIRLLRSMEQGNC 195


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 146/293 (49%), Gaps = 57/293 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+  FD ML M P PPP   FN +L  L  NKHY TV+SLFK+  S G  PDL T +IL+
Sbjct: 47  AVASFDRMLLMRP-PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILM 105

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------ 114
           NCFC +  ++  F VL  IL+  + P+ +T  +LIK                        
Sbjct: 106 NCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQ 165

Query: 115 ------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAKEL 142
                       +CK                    PD + YNTII  LCK   +  A +L
Sbjct: 166 LNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDL 225

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           + +M  K + PNVVTY +++ GFC      EA  L  EM  + + P+V TFN ++D L K
Sbjct: 226 YSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGK 285

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GKM  A  +L +M++  ++PD  TYN+L+DG+    +V +AK +F SM   G
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG 338



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++       H     SL   +    + PD+ T + LI+   K G++    +V
Sbjct: 236 PNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIV 295

Query: 94  LGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNTIIDGLCK 132
           L  ++++C  PDVVT+ SLI       KV                P+  TY T+IDGLCK
Sbjct: 296 LAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK 355

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  VD+A  LF +MK KN+ P++VTYTS+I G C  +    A  L  +M +QG+QP+V +
Sbjct: 356 EKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 415

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D LCK G+++ A      ++  G   +  TYN +++G C       A +L   ME
Sbjct: 416 YTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKME 475

Query: 253 SMGC 256
             GC
Sbjct: 476 GKGC 479



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 44/259 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ I+L  L K    +     F+RL   G   ++ T++++IN  CK         +
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDL 470

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------------------------- 113
             ++      PD +TF ++I                                        
Sbjct: 471 KSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLA 530

Query: 114 ---KVC-KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
              K C KPD +TY T++DG      +  AK +F  M    V PNV  YT +I G C   
Sbjct: 531 VMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKK 590

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             +EA  LF EM  + + PN+VT+  ++D LCKN  ++ A +LL  M +HG++PD ++Y 
Sbjct: 591 TVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYT 650

Query: 230 TLLDGFCLTGRVNHAKELF 248
            LLDG C +GR+  AKE+F
Sbjct: 651 ILLDGLCKSGRLEGAKEIF 669



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 44/265 (16%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF-------------- 81
           V ++N+M+  L K   +   + L  ++   G  PD  T   +I                 
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 82  ---------CKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------IKVCK------ 117
                     +  R+    +VL  + ++C  PDVVT+ +L         +K  K      
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM 567

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 P+   Y  +IDGLCK+  VD+A  LF +MK KN+ PN+VTYTS+I   C  +  
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHL 627

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
             A  L  EM + G+QP+V ++ +++D LCK+G+++ A  +   ++  G   +   Y  +
Sbjct: 628 ERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAM 687

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           ++  C  G  + A +L   ME  GC
Sbjct: 688 INELCKAGLFDEALDLQXKMEDKGC 712



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 37/245 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  M+  L K K  D  +SLF+ +    + PD+ T++ LI+  CK   +     +
Sbjct: 341 PNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIAL 400

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++      PDV ++T L              +D LCK G ++ AKE F ++  K    
Sbjct: 401 CKKMKEQGIQPDVYSYTIL--------------LDALCKGGRLENAKEFFQRLLVKGYHL 446

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TY  +I G C A+ + EA  L  +M  +G  P+ +TF  I+  L +  + D+A  +L
Sbjct: 447 NVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKIL 506

Query: 214 DLMIQHG-----------------------VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
             MI  G                       ++PD  TY TL+DG+ L   + HAK +F S
Sbjct: 507 REMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYS 566

Query: 251 MESMG 255
           M  MG
Sbjct: 567 MAQMG 571



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 14/191 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  + IM+  L K K  D  +SLF+ +    +FP++ T++ LI+  CK   +     +
Sbjct: 574 PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIAL 633

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +      PDV ++T L+              DGLCK G ++ AKE+F ++  K    
Sbjct: 634 LKEMKEHGIQPDVYSYTILL--------------DGLCKSGRLEGAKEIFQRLLVKGYHL 679

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV  YT++I   C A  ++EA  L  +M D+G  P+ VTF++I+  L +  + D+A  +L
Sbjct: 680 NVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKIL 739

Query: 214 DLMIQHGVRPD 224
             MI  G+  +
Sbjct: 740 XEMIARGLMKE 750



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 19/253 (7%)

Query: 5   SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN--KHYDTVLSLFKRL 62
           + G  +   +   EA  +   M +    P  V+   +M G    N  KH   V   F  +
Sbjct: 511 ARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYV---FYSM 567

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
              G+ P++  ++I+I+  CK   V     +   +      P++VT+TSLI         
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLI--------- 618

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
                D LCK   +++A  L  +MK+  ++P+V +YT ++ G C +     AK +F  ++
Sbjct: 619 -----DALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLL 673

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G   NV  +  +++ELCK G  DEA  L   M   G  PDA T++ ++         +
Sbjct: 674 VKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDEND 733

Query: 243 HAKELFVSMESMG 255
            A+++   M + G
Sbjct: 734 KAEKILXEMIARG 746


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 152/301 (50%), Gaps = 57/301 (18%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           T I+ ++AL  F  M+RM+P P  V+ F   LG  AK K Y TV+SL  +++  G+  ++
Sbjct: 65  TNISIDDALASFYRMVRMNPRPS-VAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNV 123

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRI---------------------------------- 97
           Y+ ++LINC C++  V     +LG++                                  
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 98  -LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGF 135
            +R    P+V+++ ++I                       CKPD +TYNTIID LCK   
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRL 243

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V+ A E   +M D+ + PNV TY  ++ GFC     NEA RLF EM+ + V P+ VT  +
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTI 303

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D LCK G + EA  + + M + GV P+  TYN L+DG+CL   +N AK++F  M   G
Sbjct: 304 LVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG 363

Query: 256 C 256
           C
Sbjct: 364 C 364



 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F+ M+R     P V S+N ++  L K  +    + +FK++   G  PD+ T++ +
Sbjct: 176 EAVELFNEMVR-RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTI 234

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   V+     L  +L     P+V T+  ++                     +  
Sbjct: 235 IDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDV 294

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T   ++DGLCK+G V +A+ +F  M +K V+PN+ TY +++ G+C     NEAK+
Sbjct: 295 MPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKK 354

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+ QG  P V ++N++++  CK+ +MDEA SLL  M    + PD  TY+TL+ G C
Sbjct: 355 VFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLC 414

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A  +F  M S G
Sbjct: 415 QFGRPKEALNIFKEMCSYG 433



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N M+         +    LFK +    + PD  T +IL++  CK G VS   +
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARL 319

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           V   +      P++ T+ +L+                     + C P   +YN +I+G C
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   +D+AK L  +M  K + P+ VTY+++++G C      EA  +F EM   G+ PN+V
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLV 439

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+++++D  CK+G +DEA  LL  M +  + P+   +  L++G  + G++  AKELF  +
Sbjct: 440 TYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKL 499

Query: 252 ESMG 255
            + G
Sbjct: 500 FADG 503



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M       P +S++N ++      +  +    +F+ +   G  P +++++I
Sbjct: 315 SEARLVFETMTE-KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNI 373

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN FCK  R+     +L  +      PD VT+++L++ +C+                  
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY+ ++DG CK G +D+A +L   M++K ++PN+V +T +I G   A     AK
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF ++   G++P + T+ V++  L K G  DEA  L   M   G  P++ +YN ++ GF
Sbjct: 494 ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGF 553



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F+ M+R     P V S+NI++    K++  D   SL   +    L PD  T+S 
Sbjct: 350 NEAKKVFEIMIR-QGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+   C+ GR      +   +      P++VT++ L+                     K 
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + +  +I+G+   G ++ AKELF K+    ++P + TYT +I+G       +EA 
Sbjct: 469 LEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAY 528

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G  PN  ++NV++    +N     A  L+D M+      +  T+  LLD
Sbjct: 529 DLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 148/278 (53%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+  FN +LG LAK K Y T +SL K++   G+  +  T +ILINCFC +G+++  F V
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
           LG+IL+  + PD +T  +L+K                                    +CK
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               P+ + YNTIIDGLCK   V++A +L+ +M  + + P+ +T
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAIT 187

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC       A  L  EM+ + + P V  +N++++ LCK G + EA +LL +M 
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G++P   TY+TL+DG+CL G V +AK++F +M  MG
Sbjct: 248 KEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMG 285



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+    + P V  +N ++  L K+K  +    L+  +++ G+FPD  T++ LI  FC +G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++   F +L  ++              +K   P    YN +I+ LCK+G V +AK L   
Sbjct: 200 QLMGAFSLLDEMI--------------LKNINPGVYIYNILINALCKEGNVKEAKNLLAV 245

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + +KP VVTY++++ G+C   +   AK++F  M+  GV PNV ++N++++ LCK  +
Sbjct: 246 MTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +DEA +LL  M+   + PD  TYN+L+DG C +GR+  A  L   M   G
Sbjct: 306 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRG 355



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  + D M+ +    P V  +NI++  L K  +     +L   +   G+ P + T+S L+
Sbjct: 204 AFSLLDEMI-LKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           + +C +G V +   +   +++    P+V ++  +I  +CK                    
Sbjct: 263 DGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 322

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYN++IDGLCK G +  A  L  +M  +    +VVTYTS++   C   + ++A  L
Sbjct: 323 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 382

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F++M ++G+QP + T+  ++D LCK G++  A  L   ++  G   D +TY  ++ G C 
Sbjct: 383 FMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCK 442

Query: 238 TGRVNHAKELFVSMESMGC 256
            G  + A  +   ME  GC
Sbjct: 443 EGMFDEALAIKSKMEDNGC 461



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 15/234 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF  M++M  +P  V S+NIM+  L K K  D  ++L + +    + PD  T++ LI+  
Sbjct: 277 IFHAMVQMGVNPN-VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 335

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK GR++    ++  +       DVVT+TSL+              D LCK   +DKA  
Sbjct: 336 CKSGRITSALNLMNEMHHRGQPADVVTYTSLL--------------DALCKNQNLDKATA 381

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF+KMK++ ++P + TYT++I G C       A+ LF  ++ +G   +V T+ V++  LC
Sbjct: 382 LFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLC 441

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G  DEA ++   M  +G  P+A T+  ++         + A++L   M + G
Sbjct: 442 KEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 155/306 (50%), Gaps = 57/306 (18%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
           G      I+ ++AL  F  M+RM+P P  V  F   LG +AK K Y + +SL  +++  G
Sbjct: 68  GSNTSNDISIDDALTSFYRMVRMNPRPS-VVEFGKFLGSIAKKKQYSSAVSLCNQMDLFG 126

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------ 114
           +  ++Y+ ++LINC C++  V     V+G++ +    PD +TF +LI             
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAV 186

Query: 115 ------------------------VCK--------------------PDAITYNTIIDGL 130
                                   +CK                    P+ +TYNTIID L
Sbjct: 187 GLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSL 246

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   V++A E   +M D+ + P+VVTY +++ GFC     NEA RLF EM+ + V P+ 
Sbjct: 247 CKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDT 306

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTFN+++D LCK G + EA  + + M + G  P+A+TYN L+DG+CL  +++ A ++   
Sbjct: 307 VTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGI 366

Query: 251 MESMGC 256
           M   GC
Sbjct: 367 MIGKGC 372



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F+ M+      P V S+N ++  L KN +    + +F+++      P++ T++ +
Sbjct: 184 EAVGLFNEMV-WSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTI 242

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   V+     L  ++     PDVVT+ +++                     +  
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+N ++DGLCK+G V +A+ +   M +K  +PN  TY +++ G+C  N  +EA +
Sbjct: 303 MPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIK 362

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M+ +G  PN+ ++N++++  CK+ +M+EA  LL  M +  + PD  TY+TL+ G C
Sbjct: 363 VLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLC 422

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A  LF  M S G
Sbjct: 423 QVGRPREALNLFKEMCSSG 441



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N +L         +    LFK +    + PD  T +IL++  CK G VS    
Sbjct: 268 PPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARC 327

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           V   +      P+  T+ +L+                     K C P+  +YN +I+G C
Sbjct: 328 VSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   +++AK L  +M +KN+ P+ VTY+++++G C      EA  LF EM   G+ P+++
Sbjct: 388 KSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLM 447

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +++++D  CK+G +DEA  LL  M +  ++P+   Y  L+ G  + G++  AKELF  +
Sbjct: 448 AYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKL 507

Query: 252 ESMG 255
            + G
Sbjct: 508 SADG 511



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 129/256 (50%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA C+ + M     + P   ++N ++     +   D  + +   +   G  P+L +++I
Sbjct: 323 SEARCVSETMTE-KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNI 381

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN +CK  R++    +L  +     TPD VT+++L++ +C+                  
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD + Y+ ++DG CK G +D+A +L  +M ++ +KPN++ YT +IRG   A     AK
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF ++   G++P++ T+NV++  L K G  DEA      M   G  PD+ +YN ++ GF
Sbjct: 502 ELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561

Query: 236 CLTGRVNHAKELFVSM 251
                 + A +L   M
Sbjct: 562 LQNQDSSTAIQLIDEM 577



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 15/217 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M   + +P  V+   +M G L +       L+LFK + S+GL PDL  +SI
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQG-LCQVGRPREALNLFKEMCSSGLLPDLMAYSI 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G +     +L  +                +  KP+ I Y  +I G+   G +
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMHE--------------RRIKPNIILYTILIRGMFIAGKL 497

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + AKELF K+    ++P++ TY  +I+G       +EA   F +M D G  P+  ++NVI
Sbjct: 498 EVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVI 557

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +    +N     A  L+D M+      D+ T+  LLD
Sbjct: 558 IQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 41/88 (46%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+M+  L K    D     F+++   G  PD  +++++I  F +    S    +
Sbjct: 514 PDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQL 573

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           +  ++   F+ D  TF  L+ +   D I
Sbjct: 574 IDEMVGKRFSADSSTFQMLLDLESHDEI 601


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 151/289 (52%), Gaps = 56/289 (19%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ +L      P +  F  +LG L K+ HY TV+SL +++   G+  DL   SILINCF 
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------------- 114
           ++G+    F VL +IL+  + P+V+T T+LIK                            
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 115 --------VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                   +CK                    P+ + YNTIID +CK   V++A +L+ +M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             K + P+VVTY ++I GFC      +A  LF +M+ + + PNV TFN+++D  CK  ++
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            EA ++L +M++ G++PD FTYN+L+D +CL   VN AK +F ++   G
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRG 347



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  ++  M+    SP  V+   ++ G     K  D    LF ++    + P++YT +I
Sbjct: 229 NEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDAT-DLFNKMIFENINPNVYTFNI 287

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------------- 116
           L++ FCK  R+     VL  +++    PDV T+ SL+ + C                   
Sbjct: 288 LVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRG 347

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  +Y+ +I G CK   VD+A  LF +M   N+ P+VVTY S+I G C     + A 
Sbjct: 348 VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYAL 407

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM D+GV  + +T+N I+D LCKN ++D+A +LL  M   G++PD  TY TL+DG 
Sbjct: 408 KLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGL 467

Query: 236 CLTGRVNHAKELF 248
           C  GR+  A+ +F
Sbjct: 468 CKNGRLEDARIVF 480



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K K  +    L+  + S G+ PD+ T++ LI+ FC +G++     +
Sbjct: 210 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDL 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     P+V TF  L+                     +  KPD  TYN+++D  C 
Sbjct: 270 FNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCL 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V+KAK +F  +  + V PN+ +Y+ +I GFC     +EA  LF EM    + P+VVT
Sbjct: 330 VKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK GK+  A  L+D M   GV  D  TYN++LD  C   +V+ A  L   M+
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK 449

Query: 253 SMG 255
             G
Sbjct: 450 DEG 452



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++    K +      ++   +   G+ PD++T++ L++ +C +  V+    +
Sbjct: 280 PNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHI 339

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              I +    P++ +++ +I   CK                    PD +TYN++IDGLCK
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A +L  +M D+ V  + +TY S++   C  +  ++A  L  +M D+G+QP++ T
Sbjct: 400 LGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICT 459

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCKNG++++A  + + ++  G   D   Y  ++ GFC  G  + + +L   ME
Sbjct: 460 YTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKME 519

Query: 253 SMGC 256
             GC
Sbjct: 520 ENGC 523



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++IM+    K K  D  ++LFK ++   + PD+ T++ LI+  CK+G++S+   +
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +                +    D ITYN+I+D LCK   VDKA  L  KMKD+ ++P
Sbjct: 410 VDEMHD--------------RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP 455

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TYT+++ G C      +A+ +F +++ +G   +V  +  ++   C +G  DE+  LL
Sbjct: 456 DICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLL 515

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M ++G  P+A TY  ++         + A++L   M + G
Sbjct: 516 SKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRG 557


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/257 (38%), Positives = 145/257 (56%), Gaps = 22/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F+ ML  +P PP +  FN +L  + + K Y+TV+SLFK +   G+  ++ T SI
Sbjct: 22  DDALASFNRMLDRNPQPP-IIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LINCFC +  V +GF V G+ L+  F PDVV FT+LI  VC+                  
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +T N+++ G C QG +DK +++F  M  K +KP+V +Y+  I G+C     +EA 
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM 200

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM  +GV PN VT+N ++  LC+  +  +A  L   M   G+ PD   Y+TLLDGF
Sbjct: 201 ELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGF 260

Query: 236 CLTGRVNHAKELFVSME 252
           C  G ++    LF  M+
Sbjct: 261 CKQGNLDEMLVLFQEMQ 277



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 22/223 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  V+  ++M G  ++ K  D V  +F  + S GL PD+Y++SI IN +CK+ ++     
Sbjct: 143 PDVVTCNSLMRGYCSQGK-IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAME 201

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +      P+ VT+ +LIK +C+                    PD + Y+T++DG C
Sbjct: 202 LFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFC 261

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           KQG +D+   LF +M+ + VKP++V YT +I G C +    +AK +   ++ +G++P+V 
Sbjct: 262 KQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVH 321

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           T+  ++D LC+ G + EA  L   M + G  P + +YN LL G
Sbjct: 322 TYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG 364



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 15/217 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M      P  V+ +N ++  L +         LF+++ + GL PD+  +S 
Sbjct: 197 DEAMELFDEMSHRGVVPNAVT-YNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G +    V+   + R              ++ KPD + Y  II+G+C+   V
Sbjct: 256 LLDGFCKQGNLDEMLVLFQEMQR--------------RLVKPDLVVYTIIINGMCRSRKV 301

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKE+  ++  + +KP+V TYT+++ G C      EA RLF +M + G  P   ++NV+
Sbjct: 302 KDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVL 361

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +    ++        L+  M   G   DA T   L D
Sbjct: 362 LQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKD 398



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%)

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G +D A   F +M D+N +P ++ +  ++        +     LF EM  +G++ NV T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +++++  C    +D   S+    ++ G +PD   + TL+DG C  G+   A  L   M  
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 254 MGC 256
           +GC
Sbjct: 139 VGC 141


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 150/261 (57%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F  M++  P P  V  F+ +L  +AK+K+YD V+SLF  +   G+  DLYT++I
Sbjct: 51  DEAIDLFCNMIQSRPLPSIVE-FSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           +INC C+  R      V+G++++  + PDVVT +SLI                       
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CK D + YNTIIDG CK G V+ A  LF +M+   V+ + VTY S++ G C +   ++A 
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA 229

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL  +M+ + + PNV+TF  +++   + GK  EA    + MI+  + PD FTYN+++ G 
Sbjct: 230 RLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGL 289

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+ G+V+ AK++   M + GC
Sbjct: 290 CMHGQVDEAKQILDLMVTKGC 310



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 130/256 (50%), Gaps = 22/256 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M++    P  V+  +++ G    N+ +  V  L  ++       D+  ++ +I
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAV-DLVSKMEEMRCKLDVVIYNTII 181

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           + FCK G V++  V+ GR+ R     D VT+ SL+                     +   
Sbjct: 182 DGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIV 241

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ IT+  +I+   ++G   +AK+ + +M  + + P+V TY S+I G C     +EAK++
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQI 301

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G  P+VVT+N +++  CK  ++DE + L+  M Q G+  D  T+NT++ G+  
Sbjct: 302 LDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQ 361

Query: 238 TGRVNHAKELFVSMES 253
            GR + A+E+F  M S
Sbjct: 362 AGRPDAAQEIFSRMGS 377



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   ++ M+R     P V ++N M+  L  +   D    +   + + G FPD+ T++ L
Sbjct: 262 EAKKFYEEMIR-RCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTL 320

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK  RV  G     +++R      +V           D +T+NTII G  + G  D
Sbjct: 321 INGFCKTKRVDEG----TKLVREMSQRGLVV----------DTVTFNTIIQGYFQAGRPD 366

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+E+F +M  +   PN+ TY+ ++ G CY     +A  LF  M    ++ ++ T+N+++
Sbjct: 367 AAQEIFSRMGSR---PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVI 423

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +C  G +++A  L   +   G+ PD  TY T++ GFC     + A  L+  M+  G
Sbjct: 424 HGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDG 481



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 66/121 (54%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D+A +LF  M      P++V ++ ++     + +++    LF  M   G+  ++ T+N+
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ LC+  +   A S++  M++ G  PD  T ++L++GFC   RV  A +L   ME M 
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 256 C 256
           C
Sbjct: 170 C 170


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 154/277 (55%), Gaps = 26/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S    ++  I  ++A  +F  ML+  P P  V  F  +L  +AK   +D V+ LF 
Sbjct: 585 ERLRS----ELHCIKFDDAFGLFCEMLQSRPIPSIVD-FTRVLTAIAKMNKFDIVIYLFH 639

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-- 117
           ++ + G+  DLY+ +ILI+CFC+  R S    +LG++++  F P +VT  SL+   C+  
Sbjct: 640 KMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGN 699

Query: 118 ------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                             P+ + YNT+I+GLCK   ++ A E+F  M+ K +  + VTY 
Sbjct: 700 RFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYN 759

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G C +  W +A RL  +M+ + + PNV+ F  ++D   K G + EA +L   MI+ 
Sbjct: 760 TLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRR 819

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            V P+  TYN+L++GFC+ GR+  AK +F  M S GC
Sbjct: 820 SVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGC 856



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 158/278 (56%), Gaps = 26/278 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L++   G + +I   +AL +F  M++  P  P V  F  +L  +A  + Y+TV+   +
Sbjct: 34  EKLRT---GFLHSIRFEDALDLFLEMVQSQP-LPSVVDFTRLLTAIANLRRYETVIYFSQ 89

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+  DLY+ +ILI+CFC+  R+S    +LG++++  + P +VTF SL+   C   
Sbjct: 90  QMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRN 149

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTY 158
                            +P+ + YNT+ID LCK G V+ A EL  +M+ K  +  ++VTY
Sbjct: 150 RIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTY 209

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++ G CY+ +W +A R+  +M  + + P+V TF  ++D   K G +DEA  L   M+Q
Sbjct: 210 NTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQ 269

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             + P+  TYN+L++G C+ GR+ HAK+ F  M S GC
Sbjct: 270 SSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGC 307



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ + D M  +    P V  +N ++  L KN+  +  L +F  +   G+  D  T++ 
Sbjct: 702 QEAVSLVDSMAEL-GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNT 760

Query: 77  LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 101
           LI+  C  GR +                           FV  G +L          R  
Sbjct: 761 LISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRS 820

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             P+++T+ SLI                     K C PD +TYNT+I G CK   V+   
Sbjct: 821 VHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM 880

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M  + +  +  TY ++I G+C A   N A+++F  M+D GV P++VT+N+++D L
Sbjct: 881 KLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCL 940

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C NGK+++A  +++ + ++ +  D  TYN ++ G C   +V  A  LF S+   G
Sbjct: 941 CNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKG 995



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 112/242 (46%), Gaps = 22/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFV 92
           P V  +N ++ CL KN   +  L L   +   G L  DL T++ L+   C  G       
Sbjct: 168 PNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAAR 227

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L  + +    PDV TFT+LI                         P+ +TYN++I+GLC
Sbjct: 228 ILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLC 287

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G +  AK+ F  M  K   PNVVTY ++I GFC +    +  +LF  M  +G+  +  
Sbjct: 288 MHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTF 347

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++   C+ GK+  A  +   M+  GV PD  T+  LL G C+ G +  A   F  M
Sbjct: 348 TYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDM 407

Query: 252 ES 253
            S
Sbjct: 408 RS 409



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++    K  + D    L+K++  + + P+  T++ LIN  C  GR+ H    
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298

Query: 94  LGRIL-RSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLC 131
              +  + CF P+VVT+ +LI   CK                     D  TYNT+I G C
Sbjct: 299 FDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYC 357

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +  AK++F  M    V P+++T+  ++ G C   +   A   F +M        +V
Sbjct: 358 QVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIV 417

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N+++  LCK  K++EA  L   +   GV+PDA TY  ++ G C  G    A ELF  M
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRM 477

Query: 252 ESMG 255
           +  G
Sbjct: 478 KEDG 481



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 22/226 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  ++  ML+    P  V+ +N ++  L  +         F  + S G FP++ T++ 
Sbjct: 258 DEAQELYKQMLQSSIGPNTVT-YNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNT 316

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------KVCK---------- 117
           LIN FCK  RV  G  +  R+ R     D  T+ +LI         +V K          
Sbjct: 317 LINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD IT+  ++ GLC  G +  A   F  M+       +V Y  +I G C A+   EA 
Sbjct: 377 VTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAW 436

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            LF  +  +GV+P+  T+ +++  LCKNG   EA  L   M + G+
Sbjct: 437 ELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 14/199 (7%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P V ++N ++    K+K  +  + LF  +   GL  D +T++ LI+ +C+ G+++    V
Sbjct: 858  PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 917

Query: 94   LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              R++  C  P             PD +TYN ++D LC  G ++KA  +   ++   +  
Sbjct: 918  FNRMV-DCGVP-------------PDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDV 963

Query: 154  NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            +++TY  +I+G C  +   EA  LF  +  +GV+ + + +  ++  LC+NG   EA  L 
Sbjct: 964  DIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLC 1023

Query: 214  DLMIQHGVRPDAFTYNTLL 232
              M + G  P    Y+  L
Sbjct: 1024 TRMKEDGFMPSERIYDETL 1042



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 14/131 (10%)

Query: 33   PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            PP + ++NI+L CL  N   +  L + + L    +  D+ T++I+I   C+  +V   + 
Sbjct: 927  PPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWC 986

Query: 93   VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
            +   + R              K  K DAI Y T+I GLC+ G   +A +L  +MK+    
Sbjct: 987  LFRSLTR--------------KGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFM 1032

Query: 153  PNVVTYTSVIR 163
            P+   Y   +R
Sbjct: 1033 PSERIYDETLR 1043



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y   +R   +   +++A  LF EM+     P++V F  ++  + K  K D    L   M 
Sbjct: 583 YRERLRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKME 642

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+  D +++  L+  FC   R + A  L   M  +G
Sbjct: 643 NLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLG 680


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 152/295 (51%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL  F++M+  +P P  V  F  +   L + KHY TV+SL K++   G+  D+ + +I
Sbjct: 73  NDALSAFNHMVNTNPLPSIVK-FGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------------- 109
           LINCFC++  V +GF VLG+I++    P+V+TF                           
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 110 ---------------------TSLIKV--------CKPDAITYNTIIDGLCKQGFVDKAK 140
                                T +IK+        C+PD + YNTI+D LCK   V++A 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +F KMK   + P VVTYTS+I G      W EA  L  EM    + P++V F+V++D +
Sbjct: 252 HIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIM 311

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G++ EA  +L  M + GV PD  TYNTL++G+CL   V  A+++F  M S G
Sbjct: 312 CKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ IF  M +     P V ++  ++  L     +     L   +    + PDL   S+
Sbjct: 248 NEAVHIFCKM-KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G VS   V+L  +      PDV T+ +L+                     K 
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +++ +++G CK   +D+AK+LF +M  + + P+ V+Y ++I G C A    EA+
Sbjct: 367 RMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAE 426

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M   G  PN+VT+++++D L K G +D+A  L   M   G++PD  TYN ++DG 
Sbjct: 427 ELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGM 486

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+   A+ELF  +   G
Sbjct: 487 CKYGKFKDARELFAELSVKG 506



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 20/249 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG+++     EA  I   M  M   P  V+++N ++              +F+ + S G 
Sbjct: 314 EGEVS-----EARVILKTMTEMGVEPD-VATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+++ SIL+N +CK  R+           +  F  D +T   LI    PD ++YNT+I
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEA--------KQLF--DEMTHRGLI----PDTVSYNTLI 413

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            GLC+     +A+ELF  M      PN+VTY+ ++         ++A  LF  M + G++
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK 473

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P++VT+N+++D +CK GK  +A  L   +   G++P+ +     +DG C  G ++ A + 
Sbjct: 474 PDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKA 533

Query: 248 FVSMESMGC 256
           F  ME   C
Sbjct: 534 FRQMEKDDC 542



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 18  EALCIFDYML---RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           EA  +F+ M+   RM    P V SF+I++    K K  D    LF  +   GL PD  ++
Sbjct: 354 EARKVFEVMISKGRM----PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSY 409

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------ 116
           + LI+  C+  R      +   +  + + P++VT++ L+                     
Sbjct: 410 NTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMEN 469

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              KPD +TYN +IDG+CK G    A+ELF ++  K ++PN    T  I G C     +E
Sbjct: 470 SGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDE 529

Query: 174 AKRLFIEMMDQGVQP 188
           A + F +M      P
Sbjct: 530 AHKAFRQMEKDDCSP 544



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 68/139 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + +  +   L +         L  +M+   +  +V++ T +I  FC     +    +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G++PNV+TF+ +++  C  GK+  A  L D+M+  G +P+  +Y+ ++ G C 
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCR 208

Query: 238 TGRVNHAKELFVSMESMGC 256
            G+     +L   M+ +GC
Sbjct: 209 VGKTTEVIKLLEHMKVVGC 227



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 62/120 (51%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A   F  M + N  P++V +  +         +     L  +M   G+  +V++  +
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C+   +D   S+L  +I+ G+ P+  T++TL++GFC+ G++  A ELF  M + G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 157/264 (59%), Gaps = 26/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ +LR +P+PP    FN +LG L K+KHY TVLSL +++   G+ P+L+  +I
Sbjct: 68  DDAVSLFNRLLRQNPTPPAFE-FNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 77  LINCFCKMG----RVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
           LI CFC++G    ++   F+   +++   F  D V++ +LI                   
Sbjct: 127 LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             K+ + +A+ YNT+I G+CK   V+ A +L+ +M  K + PNVVTY+++I GF      
Sbjct: 187 DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL 246

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A  LF +++ + ++P+  TFN+++D  CK+ KM E  ++  +M++ G+ PD  TYN+L
Sbjct: 247 KDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSL 306

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           +DG+CL   VN AK +F +M   G
Sbjct: 307 MDGYCLVKEVNTAKSIFNTMAQGG 330



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 22/241 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP  V+   ++ G     K  D +  LF ++    + PD YT +I
Sbjct: 212 NDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI-DLFNKIILENIKPDGYTFNI 270

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L++ FCK  ++  G  V   +++    PDVVT+ SL+   C                   
Sbjct: 271 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGG 330

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +YN +I+G CK   VDKA  LF +M  KN+ PNVVTY S+I G   +   + A 
Sbjct: 331 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYAL 390

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  +M D+GV PN++T+N I+D L K  ++D+A +L+      G++P  +TY  L+DG 
Sbjct: 391 QLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGL 450

Query: 236 C 236
           C
Sbjct: 451 C 451



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 120/217 (55%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  + K+KH +    L+  + S G+ P++ T+S LI+ F  +G++     +  +I+
Sbjct: 198 YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 257

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                         ++  KPD  T+N ++DG CK   + + K +F  M  + + P+VVTY
Sbjct: 258 --------------LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTY 303

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            S++ G+C   + N AK +F  M   GV P++ ++N++++  CK  K+D+A +L + M  
Sbjct: 304 NSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHC 363

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + P+  TYN+L+DG   +GR+++A +L   M   G
Sbjct: 364 KNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 400



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 37/259 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   +F  M++    P  V+  ++M G CL K    +T  S+F  +   G+ PD+ +++I
Sbjct: 283 EGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVK--EVNTAKSIFNTMAQGGVNPDIRSYNI 340

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN FCK+ +V     +   +      P+VVT              YN++IDGL K G +
Sbjct: 341 LINGFCKIKKVDKAMNLFNEMHCKNIIPNVVT--------------YNSLIDGLSKSGRI 386

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L  +M D+ V PN++TY S+I      +  ++A  L  +  DQG+QP++ T+ ++
Sbjct: 387 SYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTIL 446

Query: 197 MDEL--------------------CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +D L                    CK G  DEA SLL  M      P+A TY   +    
Sbjct: 447 IDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLL 506

Query: 237 LTGRVNHAKELFVSMESMG 255
                + A++LF  M + G
Sbjct: 507 DNNENDKAEKLFREMITRG 525



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 42/211 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  IF+ M +   +P  + S+NI++    K K  D  ++LF  ++   + P++ T++ 
Sbjct: 317 NTAKSIFNTMAQGGVNPD-IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 375

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LI+   K GR+S+   ++ ++      P+++T+ S+I                       
Sbjct: 376 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 435

Query: 115 --------------VCKPDAI-----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                         +CK +       TYN +I G CK+G  D+A  L  KMKD +  PN 
Sbjct: 436 IQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNA 495

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           VTY   IR     N+ ++A++LF EM+ +G+
Sbjct: 496 VTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           LI + K + I+Y++          VD A  LF ++  +N  P    +  ++     +  +
Sbjct: 43  LILLTKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHY 102

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG----KMDEASSLLDLMIQHGVRPDAFT 227
           +    L  +M  +G++PN+   N+++   C+ G    ++ +A    D ++  G   D  +
Sbjct: 103 HTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVS 162

Query: 228 YNTLLDGFCLTGRVNHAKELF 248
           Y TL+ G C  G    A +L 
Sbjct: 163 YGTLIHGLCKVGETRAALDLL 183


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 152/295 (51%), Gaps = 58/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  M+      PP+  FN +L   AK KHY T +SL  RL   G+ PDL+T +I
Sbjct: 290 DKALNLFKEMIL--SRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNI 347

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC MG+++ GF VL +IL+  + P  VT  +LIK                      
Sbjct: 348 LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 407

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    P+   Y+TIID LCK   V +A 
Sbjct: 408 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 467

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  +VVTY+++I GFC      EA  L  EM+ + + P+V T+ +++D L
Sbjct: 468 GLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDAL 527

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K GK+ EA S+L +M++  V+PD FTYNTL++G+ L   V  A+ +F +M  MG
Sbjct: 528 GKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMG 582



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---- 117
           PD+ T++IL++   K G+V     VL  +L++C  PDV T+ +L+       +V K    
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV 574

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD  TY  +I+G CK   VD+A  LF +M  KN+ P+ VTY+S++ G C 
Sbjct: 575 FNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCK 634

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +   +    L  EM D+G   +V+T+N ++D LCKNG +D+A +L + M   G+RP+ FT
Sbjct: 635 SGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LLDG C  GR+  A+E+F  + + G
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKG 722



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 132/238 (55%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M  M  +P  V ++ I++    K+K  D  L+LFK ++   + PD  T+S L
Sbjct: 570 KAQHVFNAMSLMGVTPD-VHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSL 628

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++  CK GR+S+ + ++   +R    P              D ITYN++IDGLCK G +D
Sbjct: 629 VDGLCKSGRISYVWDLIDE-MRDRGQP-------------ADVITYNSLIDGLCKNGHLD 674

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  LF KMKD+ ++PN  T+T ++ G C      +A+ +F +++ +G   +V  +NV++
Sbjct: 675 KAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMI 734

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              CK G ++EA ++L  M ++G  P+A T++ +++        + A++L   M + G
Sbjct: 735 YGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 21/221 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-- 113
           LS+  ++   G  PD  T + LI   C  G+V        ++L   F  + V++ +LI  
Sbjct: 48  LSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLING 107

Query: 114 -------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                              ++ KP+   YNTIID LCK   V +A  LF +M  K +  N
Sbjct: 108 VCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISAN 167

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VVTY+++I GFC      EA  L   M+ + + PNV T+N+++D LCK GK+ EA S+L 
Sbjct: 168 VVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLA 227

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +M++  V+ +  TY+TL+DG+ L   V  A+ +F +M  MG
Sbjct: 228 VMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 268



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + + M+ +    P V ++ I++  L K        S+   +    + PD++T++ L
Sbjct: 500 EAIGLLNEMV-LKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTL 558

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           +N +  +  V     V   +     TPDV T+T LI   CK                   
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY++++DGLCK G +    +L  +M+D+    +V+TY S+I G C     ++A  
Sbjct: 619 VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIA 678

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M DQG++PN  TF +++D LCK G++ +A  +   ++  G   D + YN ++ G C
Sbjct: 679 LFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHC 738

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A  +   ME  GC
Sbjct: 739 KQGLLEEALTMLSKMEENGC 758



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  ++ ++  L K +       LF  +   G+  D+ T+S LI  FC +G++    
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   PD  TY  ++D L K+G V +AK +   M    V
Sbjct: 503 GLLNEMV--------------LKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACV 548

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+V TY +++ G+    +  +A+ +F  M   GV P+V T+ ++++  CK+  +DEA +
Sbjct: 549 KPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALN 608

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M Q  + PD  TY++L+DG C +GR+++  +L   M   G
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRG 652



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 48/244 (19%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  +N ++  L K +       LF  +   G+  ++ T+S LI  FC +G++    
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEAL 188

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  ++              +K   P+  TYN ++D LCK+G V +AK +   M    V
Sbjct: 189 GLLNVMV--------------LKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACV 234

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K NV+TY++++ G+    +  +A+ +F  M   GV P+V ++N++++  CK  ++D+A +
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALN 294

Query: 212 LLDLMI--------------------QH--------------GVRPDAFTYNTLLDGFCL 237
           L   MI                    +H              G++PD FT N L++ FC 
Sbjct: 295 LFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCH 354

Query: 238 TGRV 241
            G++
Sbjct: 355 MGQI 358



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N ++  L         L    +L + G   +  +++ LIN  C++G       
Sbjct: 60  PPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIK 119

Query: 93  VLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLC 131
            L +I      P+V  + ++I  +CK                     + +TY+T+I G C
Sbjct: 120 FLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFC 179

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G + +A  L   M  K + PNV TY  ++   C      EAK +   M+   V+ NV+
Sbjct: 180 IVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVI 239

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++ +MD      ++ +A  + + M   GV PD  +YN +++GFC   RV+ A  LF  M
Sbjct: 240 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           +F  ++  G+ PD+++++I+IN FCK+ RV     +   ++ S F P             
Sbjct: 260 VFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP------------- 306

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
              I +N I+D   K      A  L  +++ K ++P++ T   +I  FC+         +
Sbjct: 307 --IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSV 364

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++ +G  P+ VT N ++  LC  G++ +A    D ++  G + +  +Y TL++G C 
Sbjct: 365 LAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 424

Query: 238 TGRVNHAKELF 248
            G    A +L 
Sbjct: 425 IGDTRGAIKLL 435



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    P  V ++N ++  L KN H D  ++LF ++   G+ P+ +T +IL++  CK GR
Sbjct: 648 MRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR 707

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     V   +L   +  DV                YN +I G CKQG +++A  +  KM
Sbjct: 708 LKDAQEVFQDLLTKGYHLDVY--------------IYNVMIYGHCKQGLLEEALTMLSKM 753

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ++    PN VT+  +I      ++ ++A++L  +M+ +G+
Sbjct: 754 EENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F  M+R++P P  V  F   LG  AK K Y TV+SL  +++   +  ++Y+ +I
Sbjct: 75  DDALASFYRMVRINPRPS-VVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINC C++  V     VLG++ +    PD +TF +LI                       
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+ +TY+TIID LCK   V+ A 
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E   +M ++ + PNV TY S++ GFC     NEA RLF EM+ + V PN VTF +++D L
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGL 313

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK G + EA  + + M + GV PD  TYN L+DG+CL   +N AK++F  M   GC
Sbjct: 314 CKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGC 369



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F+ M++     P V S+  ++  L K  +    + +FK++   G  P++ T+S +
Sbjct: 181 EAVELFNEMVK-RGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTI 239

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   V+     L  ++     P+V T+ S++                     +  
Sbjct: 240 IDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDV 299

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T+  ++DGLCK+G V +A+ +F  M +K V+P++ TY +++ G+C     NEAK+
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKK 359

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+ +G  P   ++N++++  CK+ +MDEA SLL  M    + PD  TY+TL+ G C
Sbjct: 360 VFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLC 419

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A  LF  M S G
Sbjct: 420 QLGRPKEALNLFKEMCSYG 438



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 21/237 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N ++         +    LFK +    + P+  T +IL++  CK G VS   +
Sbjct: 265 PPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARL 324

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           V   +      PD+ T+ +L+                     K C P A +YN +I+G C
Sbjct: 325 VFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYC 384

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   +D+AK L  +M  K + P+ VTY+++++G C      EA  LF EM   G  PN+V
Sbjct: 385 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLV 444

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T+ +++D  CK+G +DEA  LL  M +  + P+   Y  L++G  + G++  AKELF
Sbjct: 445 TYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELF 501



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 22/240 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M       P +S++N ++      +  +    +F+ +   G  P  ++++I
Sbjct: 320 SEARLVFETMTE-KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNI 378

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN +CK  R+     +L  +      PD VT+++L++ +C+                  
Sbjct: 379 LINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG 438

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY  ++DG CK G +D+A +L   MK+K ++PN+V YT +I G   A     AK
Sbjct: 439 PHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAK 498

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF ++   G +P++ T+ V++  L K G  DEA  L   M   G  P++ +YN ++ GF
Sbjct: 499 ELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGF 558



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F+ M+R     P   S+NI++    K++  D   SL   +    L PD  T+S 
Sbjct: 355 NEAKKVFEIMIR-KGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYST 413

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+   C++GR      +   +      P++VT+  L+                     K 
Sbjct: 414 LMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK 473

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + Y  +I+G+   G ++ AKELF K+     +P++ TYT +I+G       +EA 
Sbjct: 474 LEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAY 533

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G  PN  ++NV++    +N     A  L+D M+      +  T+  LLD
Sbjct: 534 DLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 1/157 (0%)

Query: 101 CFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           C    + +F  ++++  +P  + +   +    K+        L  +M    V  NV +  
Sbjct: 73  CVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLN 132

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +I   C  N  + +  +  +M   G+ P+ +TFN +++ LC  GK+ EA  L + M++ 
Sbjct: 133 ILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKR 192

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  +Y T+++G C TG  + A ++F  ME  GC
Sbjct: 193 GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGC 229


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 151/267 (56%), Gaps = 28/267 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A C+F+ ML +   P  V++ ++++  L K         L + +   G   D+ T + 
Sbjct: 510 EKAKCLFNEMLDVGIQPD-VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTT 568

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+   C   R+S    +  ++ +    P+VVT  +L+K                      
Sbjct: 569 LVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDT 628

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                 CKP+AI+Y+ IIDGLCK G  D+A+ELF +MK   V P+V++YTS+I GFC + 
Sbjct: 629 SPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSG 688

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            W +AK LF EM+D GVQP+V TF+V++D LCK GK+ EA+ LL++MIQ G  P+  TY 
Sbjct: 689 KWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYT 748

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           TL+ G C+  R++ A +LF+ M+ +GC
Sbjct: 749 TLVKGLCMNDRISEATQLFMKMQKLGC 775



 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 71/301 (23%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI---------L 77
           +R+    P   +FNI++ CL   K  +  L+    +   G  PD+ T+SI         L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VC 116
           I+  CK G+V     +L  +++     D+VT+++LIK                      C
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 117 KPDAITYNT-----------------------------------------IIDGLCKQGF 135
           +PDAITY T                                         IIDGLCK   
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            D+A+ELF +MK + + P+V++YTS+I GFC++  W +AK LF EM+D G+QP+V T  V
Sbjct: 181 EDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK GK+ EA+ LL++M+  G   D  TY+TL+ G C+  R++ A +LF+SM+ +G
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG 300

Query: 256 C 256
           C
Sbjct: 301 C 301



 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 27/250 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++ ++++  L K         L + +   G   D+ T+S LI   C   R+S    +
Sbjct: 345 PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------------VCKPDAITYNTI 126
              + +    PD +T+ +L+K                            CKP  I+Y+ I
Sbjct: 405 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 464

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           IDGLCK    D+A+ELF +MK + + P+V++YT++I GFC +  W +AK LF EM+D G+
Sbjct: 465 IDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 524

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           QP+V T +V++D LCK GK+ EA+ LL+++IQ G   D  T  TL+ G C+  R++ A +
Sbjct: 525 QPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQ 584

Query: 247 LFVSMESMGC 256
           LF+ M+ +GC
Sbjct: 585 LFLKMQKLGC 594



 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 28/251 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++I++  L K++  D    LFK + + G+ PD+ +++ LI+ FC  G+      +
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L     PDV T   LI +                     C  D +TY+T+I GLC 
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCM 282

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-------QG 185
           +  + +A +LF+ MK    +P+ + Y ++++G C     N A  L  EM++       + 
Sbjct: 283 KHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKC 342

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++P+V T ++++D LCK GK+ EA+ LL++MIQ G   D  TY+TL+ G C+  R++ A 
Sbjct: 343 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 402

Query: 246 ELFVSMESMGC 256
            LF+SM+ +GC
Sbjct: 403 WLFMSMQKLGC 413



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 139/305 (45%), Gaps = 70/305 (22%)

Query: 17  NEALCIFDYMLRMHPSP--------PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           NE L     ++R    P        P V++ ++++  L K         L + +   G  
Sbjct: 27  NEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCI 86

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------- 114
            D+ T+S LI   C   R+S    +   + +    PD +T+ +L+K              
Sbjct: 87  LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 146

Query: 115 -------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                         CKP  I+Y+ IIDGLCK    D+A+ELF +MK + + P+V++YTS+
Sbjct: 147 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 206

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I GFC++  W +AK LF EM+D G+QP+V T  V++D  CK GK+ EA+ LL++M+  G 
Sbjct: 207 IHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGC 266

Query: 222 -----------------------------------RPDAFTYNTLLDGFCLTGRVNHAKE 246
                                              RPDA  Y TL+ G C TG++N A  
Sbjct: 267 ILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALH 326

Query: 247 LFVSM 251
           L   M
Sbjct: 327 LHQEM 331



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 128/249 (51%), Gaps = 27/249 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S++I++  L K    D    LFK + + G+ PD+ +++ LI+ FC+ G+      +
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++     PDV TF+ LI +                     C P+ +TY T++ GLC 
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM 756

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ----- 187
              + +A +LF+KM+     P+VVTY ++++G C   +   A  L  +M+    Q     
Sbjct: 757 NDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF 816

Query: 188 -PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+V+++++I+D LCK+G+ DEA  L   M   GV P+  +Y +L+ GFC +G++  AK 
Sbjct: 817 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 876

Query: 247 LFVSMESMG 255
           LF  M   G
Sbjct: 877 LFNEMVDQG 885



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 29/247 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++    ++  +     LF  +   G+ PD+ T S+LI+  CK G+V     +
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 731

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +++    P+ VT+T+L+K                      C PD +TY T++ GLC+
Sbjct: 732 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 791

Query: 133 QGFVDKAKELFLKMKD------KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            G +  A EL  KM         N KP+V++Y+ +I G C     +EA+ LF EM   GV
Sbjct: 792 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 851

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PNV+++  ++   C++GK+++A  L + M+  GV+ +A TY+ ++ GFC  G+++ A  
Sbjct: 852 IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA-- 909

Query: 247 LFVSMES 253
           LF  ME+
Sbjct: 910 LFQKMEA 916



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 138/343 (40%), Gaps = 105/343 (30%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M +     P V S+  ++     +  ++    LF  +   G+ PD+ T  +
Sbjct: 182 DEARELFKEM-KAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+ FCK G+V     +L  ++      D+VT+++LIK                      
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG 300

Query: 116 CKPDAITYNTIIDGLC------------------------------------------KQ 133
           C+PDAI Y T++ GLC                                          K+
Sbjct: 301 CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKE 360

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT- 192
           G V +A EL   M  +    ++VTY+++I+G C  +  +EA  LF+ M   G +P+ +T 
Sbjct: 361 GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 420

Query: 193 ----------------------------------------FNVIMDELCKNGKMDEASSL 212
                                                   +++I+D LCK+ + DEA  L
Sbjct: 421 GTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAREL 480

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + M   G+ PD  +Y TL+ GFCL+G+   AK LF  M  +G
Sbjct: 481 FEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVG 523



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 62/286 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR-LNSTGLF-----PD 70
           +EA  +F  M ++   P  ++   +M G L +  + +  L L +  LN TG +     P 
Sbjct: 399 SEATWLFMSMQKLGCRPDAITYGTLMKG-LCQTGNINIALQLHQEMLNDTGRYGIKCKPT 457

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           L ++SI+I+  CK  R      +   +      PDV              I+Y T+I G 
Sbjct: 458 LISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDV--------------ISYTTLIHGF 503

Query: 131 CKQGFVDKAKELFLKMKDKNVKP-----------------------------------NV 155
           C  G  +KAK LF +M D  ++P                                   +V
Sbjct: 504 CLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDV 563

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VT T++++G C  +  ++A +LF++M   G  PNVVT   +M  LC++G +  A  L   
Sbjct: 564 VTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKN 623

Query: 216 MIQ----HGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+     +G+  +P+A +Y+ ++DG C  GR + A+ELF  M+++G
Sbjct: 624 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 669


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 144/278 (51%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+  F  +LG L K KHY T +SL +++   G+ P+L T +ILINCFC +G+++  F V
Sbjct: 63  PPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSV 122

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
           LG+IL+  + PD +T  +L+K                                    +CK
Sbjct: 123 LGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 182

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               PD + Y+TIIDGLCK   V++A + F +M  + + PNV+T
Sbjct: 183 IGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVIT 242

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I GFC A     A  L  EM+ + + PNV T+N+++D LCK GK+ EA  LL  M 
Sbjct: 243 YSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMH 302

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G   D  TYN++LDG C +  ++ A  LF+ M+  G
Sbjct: 303 HKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWG 340



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 14/231 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+    + P V  ++ ++  L K+K  +     F  +N+ G+FP++ T+S LI  FC  G
Sbjct: 195 MIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG 254

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++   F +L  ++              +K   P+  TYN +ID LCK+G V +AK+L  +
Sbjct: 255 QLMGAFSLLNEMI--------------LKNINPNVYTYNILIDALCKEGKVKEAKKLLAE 300

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K    +VVTY SV+ G C + + ++A  LF++M   G+QPN  T+  ++D LCK G+
Sbjct: 301 MHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGR 360

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  A  L   ++  G   D  TYN ++ G C  G  + A  +   ME  GC
Sbjct: 361 LKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGC 411



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 24/227 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A   F  M      P  ++   ++ G CLA         SL   +    + P++YT++
Sbjct: 222 NQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG--QLMGAFSLLNEMILKNINPNVYTYN 279

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           ILI+  CK G+V     +L  +       DVVT+ S++  +CK                 
Sbjct: 280 ILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKW 339

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+  TY  +IDGLCK G +  A++LF  +  K    +V TY  +I G C    +++A
Sbjct: 340 GIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKA 399

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
             +  +M D G  PN VTF++I+  L +  + D+A  LL  MI  G+
Sbjct: 400 LAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 170/354 (48%), Gaps = 100/354 (28%)

Query: 2   RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
           R  SSG GD   I  N        +A+ +F  M++  P  P +  FN +L  +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
            V+SL +++   G+  +LYT++ILINCFC+  ++S    +LG++++              
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
                                  + PD +TFT+LI                     + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 118 PDAITYNTIIDGLCKQGFVD-----------------------------------KAKEL 142
           P+ +TY  +++GLCK+G +D                                    A  L
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F +M++K V+PNV+TY+S+I   C    W++A RL  +M+++ + PNVVTFN ++D   K
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GK+ EA  L D MI+  + PD FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 131/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++ CL   + +     L   +    + P++ T + LI+ F K G++     +
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +++    PD+ T++SLI                     K C P+ +TYNT+I+G CK
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+  ELF +M  + +  N VTYT++I GF  A D + A+ +F +M+  GV PN++T
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCKNGK+++A  + + + +  + P  +TYN +++G C  G+V    +LF S+ 
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS 532

Query: 253 SMG 255
             G
Sbjct: 533 LKG 535



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 22/231 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T++ L
Sbjct: 348 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVC--------------- 116
           IN FCK  R+  G  +   + +     + VT+T+LI      + C               
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYNT++DGLCK G ++KA  +F  ++   ++P + TY  +I G C A    +   
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           LF  +  +GV+P+V+ +N ++   C+ G  +EA +L   M + G  PD+ T
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/267 (37%), Positives = 148/267 (55%), Gaps = 29/267 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK---NKHYDTVLSLFKRLN---STGLFPD 70
           +EAL +FD +L     P  V +FN +L  +++   +   + V+SLF R+    S+ + P+
Sbjct: 31  DEALKLFDELLHC-ARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------- 115
             T+SILI CFC+MGR+ HGF   G IL++ +  +V+  + L+K                
Sbjct: 90  ACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILL 149

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                  C PD + YNT+I+G  ++G V+KA  LFL+M D+ + PNVVTYT+VI G C A
Sbjct: 150 LRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKA 209

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              + AK +F +M+D+GV+P+  T+N ++      GK  E   +L+ M  HG+ PD  TY
Sbjct: 210 QVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITY 269

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
             LLD  C  GR   A+  F SM   G
Sbjct: 270 ALLLDYLCKNGRCREARLFFDSMFRKG 296



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD M R     P V+ + I+L   A       + S    +   G+ P+    +I+
Sbjct: 284 EARLFFDSMFR-KGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIM 342

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
              + K   +     +  ++ +   +PDVV+F +LI              D LCK G VD
Sbjct: 343 FCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALI--------------DALCKLGRVD 388

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M ++ V PN+  ++S++ G C    W +A+ LF E++DQG+  + V FN +M
Sbjct: 389 DAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLM 448

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++ EA  L+DLMI+ GVRP+  +YNTL+ G CLTGR++ A +L   M S G
Sbjct: 449 CNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG 506



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 23/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNIM    AK    +  + +F ++   GL PD+ +   LI+  CK+GRV    + 
Sbjct: 334 PNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQ 393

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
             +++    TP++  F+SL+                       +C  DA+ +NT++  LC
Sbjct: 394 FNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGIC-VDAVFFNTLMCNLC 452

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            +G V +A+ L   M    V+PNV++Y +++ G C     +EA +L   M+  G++PN  
Sbjct: 453 NEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ +++   CK  ++D+A SL   M+  GV P   TYNT+L G   TGR + A EL+++M
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 22/252 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ IF+ M R     P V SF  ++  L K    D  +  F ++ + G+ P+++  S L
Sbjct: 354 EAMHIFNKM-RQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSL 412

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL--------------------IKV-C 116
           +   C +G+      +   +L      D V F +L                    I+V  
Sbjct: 413 VYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGV 472

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+ I+YNT++ G C  G +D+A +L   M    +KPN  TYT ++RG+C A   ++A  
Sbjct: 473 RPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYS 532

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+ +GV P V T+N I+  L + G+  EA+ L   MI    + D +TYN +L+G C
Sbjct: 533 LFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLC 592

Query: 237 LTGRVNHAKELF 248
               V+ A ++F
Sbjct: 593 KNNFVDEAFKMF 604



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+R+   P  V S+N ++         D    L   + S GL P+ +T++IL
Sbjct: 459 EAQRLIDLMIRVGVRPN-VISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  +CK  RV   + +   +L    TP V T              YNTI+ GL + G   
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVAT--------------YNTILHGLFQTGRFS 563

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A EL+L M +   K ++ TY  ++ G C  N  +EA ++F  +  +  Q + VTFN+++
Sbjct: 564 EANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMI 623

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K G+ ++A  L   +  +G+ PD  TY  + +     G +     LF +ME  G
Sbjct: 624 GALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  ML M    P V+++N +L  L +   +     L+  + ++    D+YT++I
Sbjct: 528 DDAYSLFREML-MKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNI 586

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CK   V   F +  R+                K  + D++T+N +I  L K G  
Sbjct: 587 ILNGLCKNNFVDEAFKMFRRLCS--------------KDPQLDSVTFNIMIGALLKGGRK 632

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A +LF  +    + P+VVTY  +           E   LF  M   G  PN    N +
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNAL 692

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +  L   G +  A   L  + +     +A T + L+  +       HAK L
Sbjct: 693 VRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSL 743


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 155/297 (52%), Gaps = 58/297 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTHS 75
           ++AL  F++ML   P P  +  FN +L  + K +HY D V+SL K++   GL PD YT  
Sbjct: 103 DDALAYFNHMLHRKPRPCIIQ-FNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 76  ILINCFCKMGRVSHGFVVLGRILR-----------------------------------S 100
           +LINCF ++ RV  GF VL +I++                                    
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 101 CFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKA 139
            + PDV T+T++I  +CK                    PD +TY+TIID LCK   V++A
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++F  MK K + PN+ TY S+I+G C  + W EA  +  EMM   + PN+VTF+++++ 
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            CK G + EA  +L  M + GV P+  TY++L++G+ L   V  A++LF  M + GC
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGC 398



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 134/241 (55%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K++  +  L +F  + + G+ P+++T++ LI   C   R      +
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 319

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  ++     P++VTF+ LI + CK                    P+ +TY+++++G   
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  V +A++LF  M  K  KP+V +Y  +I G+C A    EAK+LF EM+ QG+ P++V+
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LC+ G++ EA  L   M+ +G  PD  TY+ LLDGFC  G +  A  LF +M+
Sbjct: 440 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 499

Query: 253 S 253
           S
Sbjct: 500 S 500



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+      P V ++  ++  L K         LF+++   G  PD+ T+S +
Sbjct: 210 QAVELFDDMV-ARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTI 268

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK  RV+    +   +     +P++ T+ SLI+ +C                    
Sbjct: 269 IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNI 328

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T++ +I+  CK+G V +A+ +   M +  V+PNVVTY+S++ G+    +  EA++
Sbjct: 329 MPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARK 388

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G +P+V ++N++++  CK  ++ EA  L + MI  G+ PD  +YNTL+DG C
Sbjct: 389 LFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLC 448

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A +LF +M + G
Sbjct: 449 QLGRLREAHDLFKNMLTNG 467



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +   M  M   P  V+  ++M G   + +  +    LF  + + G  PD+++++IL
Sbjct: 350 EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEA-RKLFDVMITKGCKPDVFSYNIL 408

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK  R+     +   ++    TPD+V++ +LI  +C+                   
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 468

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TY+ ++DG CKQG++ KA  LF  M+   +KPN+V Y  +I   C + +  EA++
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 528

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF E+  QG+QPNV  +  I++ LCK G +DEA      M + G  P+ F+YN ++ GF 
Sbjct: 529 LFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFL 588

Query: 237 LTGRVNHAKELFVSMESMG 255
                + A +L   M   G
Sbjct: 589 QHKDESRAVQLIGEMREKG 607



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+      P V S+NI++    K K       LF  +   GL PD+ +++ L
Sbjct: 385 EARKLFDVMI-TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 443

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VC 116
           I+  C++GR+     +   +L +   PD+ T++ L+                        
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP+ + YN +ID +CK   + +A++LF ++  + ++PNV  YT++I G C     +EA  
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            F  M + G  PN  ++NVI+    ++     A  L+  M + G   D  T
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML MH +PP V  F  +LG LAK KHY T +SL K++   G+ P+L T +I
Sbjct: 34  DDAISQFNGMLLMHHTPPIVE-FGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNI 92

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LINCFC +G++S  F VLG+IL+  + P+ +T T+L+K +C                   
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQG 152

Query: 117 -KPDAITYNT-----------------------------------IIDGLCKQGFVDKAK 140
            + + ++Y T                                   IIDGLCK   V++A 
Sbjct: 153 FQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAY 212

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           + + +M  + + PNV+TYT++I GFC A     A  L  EM+ + + PNV T+ +++D L
Sbjct: 213 DFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDAL 272

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA +LL  M   G   D  TY +LLDGFC    ++ A  LF+ M+  G
Sbjct: 273 CKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWG 327



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  L K+K  +     +  +N+ G+FP++ T++ LI  FC  G+++  F +L 
Sbjct: 192 VVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLN 251

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++              +K   P+  TY  +ID LCK+G V +AK L  +M  +    +V
Sbjct: 252 EMI--------------LKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADV 297

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYTS++ GFC   + ++A  LF++M + G+QPN  T+  ++D LCK G++ +A  L   
Sbjct: 298 VTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQD 357

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  G   D  TYN ++ G C  G ++ A  +   ME  GC
Sbjct: 358 LLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGC 398



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 26/228 (11%)

Query: 17  NEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           NEA   +D+   M+     P V ++  ++G            SL   +    + P++YT+
Sbjct: 209 NEA---YDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTY 265

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------- 117
           +ILI+  CK G+V     +L  +       DVVT+TSL+   CK                
Sbjct: 266 AILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKE 325

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P+  TY  +IDGLCK G +  A++LF  +  K    +V TY  +I G C     +E
Sbjct: 326 WGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDE 385

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           A  +  +M D G  PNVVTF +I+  L K  + D+A  LL  MI  G+
Sbjct: 386 ALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F  M   +  P +V +  ++        ++ A  L  +M  +G++PN+VT N+
Sbjct: 33  VDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNI 92

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G+M  + S+L  +++ G +P+  T  TL+ G CL G V  +
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKS 141


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL +F  M+   P P  +  F  +L  +AK   YD V+SLF+++   G+ P L T +I
Sbjct: 65  NDALDLFTRMVHSRPLPS-IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +++C C   +       LG++++  F PD+VTFTSL+   C                   
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ +TY T+I  LCK   ++ A ELF +M     +PNVVTY +++ G C    W +A 
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +MM + ++PNV+TF  ++D   K GK+ EA  L ++MIQ  V PD FTY +L++G 
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+ G ++ A+++F  ME  GC
Sbjct: 304 CMYGLLDEARQMFYLMERNGC 324



 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 135/256 (52%), Gaps = 22/256 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD +L M    P V ++  ++ CL KN+H +  + LF ++ + G  P++ T++ L
Sbjct: 171 DAIALFDQILGM-GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           +   C++GR      +L  +++    P+V+TFT+LI    KV K                
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TY ++I+GLC  G +D+A+++F  M+     PN V YT++I GFC +    +  +
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMK 349

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM  +GV  N +T+ V++   C  G+ D A  + + M      PD  TYN LLDG C
Sbjct: 350 IFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409

Query: 237 LTGRVNHAKELFVSME 252
             G+V  A  +F  M 
Sbjct: 410 CNGKVEKALMIFEYMR 425



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +++ M++M   P  V ++  ++  L      D    +F  +   G +P+   ++ L
Sbjct: 276 EAKELYNVMIQMSVYPD-VFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ FCK  RV  G  +   + +     + +T+T LI                     +  
Sbjct: 335 IHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TYN ++DGLC  G V+KA  +F  M+ + +  N+VTYT +I+G C      +A  
Sbjct: 395 PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFD 454

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           LF  +  +G++PNV+T+  ++   C+ G + EA SL   M + G  P+   Y
Sbjct: 455 LFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 35/134 (26%)

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ-------------------------------- 184
           +Y  ++R   +   +N+A  LF  M+                                  
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 185 ---GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
              G+ P + T N++M  +C + +   AS  L  M++ G  PD  T+ +LL+G+C   R+
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 242 NHAKELFVSMESMG 255
             A  LF  +  MG
Sbjct: 170 EDAIALFDQILGMG 183


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 160/291 (54%), Gaps = 57/291 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  + P +  F  +LG L K KH+ T +SL K++   G+ PDL T SI
Sbjct: 114 HDAVSQFNGMLLMR-NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LINCFC +G+++  F VLG+IL+  + P+ +  T+L+K +C                   
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 117 -KPDAITYNTIIDGLCKQG-----------------------------------FVDKAK 140
            + + ++Y T+++GLCK G                                    V++A 
Sbjct: 233 FQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAY 292

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           + + +M  + + P+V+TY+++I GFC A     A  L  EM  + + P+V T+ +++D L
Sbjct: 293 DFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDAL 352

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           CK GK+ EA +LL +M + GV+P+  TY+TL+DG+CL G V++AK++F +M
Sbjct: 353 CKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAM 403



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+    + P V  +N ++  L K+K  +     +  +NS G+FPD+ T+S LI  FC  G
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG 321

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++   F +L  +               +K   PD  TY  +ID LCK+G + +AK L   
Sbjct: 322 QLMGAFSLLNEMT--------------LKNINPDVYTYTILIDALCKEGKLKEAKNLLGV 367

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + VKPNVVTY++++ G+C   + + AK++F  M+   V P+V ++N++++ LCK   
Sbjct: 368 MTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKS 427

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +DEA +LL  M+   V P+  TYN+L+DG C +GR+  A +L   +   G
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRG 477



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L K        +L   +   G+ P++ T+S L++ +C +G V +   +
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++++   P V ++  +I  +CK                    P+ +TYN++IDGLCK
Sbjct: 400 FHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCK 459

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A +L  ++  +    +V+TYTS++ G C   + ++A  LF++M ++G+QPN  T
Sbjct: 460 SGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 519

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK  ++  A  L   ++  G   D +TYN ++ G C  G ++ A  +   ME
Sbjct: 520 YTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKME 579

Query: 253 SMGC 256
             GC
Sbjct: 580 DNGC 583



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 15/234 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF  M++   +P  V S+NIM+  L K K  D  ++L + +    + P+  T++ LI+  
Sbjct: 399 IFHAMVQTEVNPS-VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK GR++    ++  +       DV+T+TSL+              DGLCK   +DKA  
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYTSLL--------------DGLCKNQNLDKAIA 503

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF+KMK++ ++PN  TYT++I G C       A++LF  ++ +G   +V T+NV++  LC
Sbjct: 504 LFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLC 563

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G +DEA ++   M  +G  PDA T+  ++         + A++L   M + G
Sbjct: 564 KEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 37/218 (16%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
           + G+ P+L T SILINC   +G+++  F VLG+IL+  + P+ +T T+L+K     AI  
Sbjct: 4   AKGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCAIKL 63

Query: 124 NTIIDGLCKQGF-------------------------------------VDKAKELFLKM 146
             +I+    +                                       V  A   F  M
Sbjct: 64  PRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGM 123

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
                 P+++ +  ++        +  A  L  +M  +G++P++VT +++++  C  G+M
Sbjct: 124 LLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQM 183

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             + S+L  +++ G +P+     TL+ G CL G V  +
Sbjct: 184 AFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKS 221


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 152/289 (52%), Gaps = 57/289 (19%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ +L ++P+PP +  F  +LG L K   Y T +SL + +   G+  DL T +ILINCF 
Sbjct: 44  FNRILNINPTPP-IFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFS 102

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------------- 114
           ++G     F V   IL+  + P+ +T T+LIK                            
Sbjct: 103 QLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKV 162

Query: 115 --------VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                   +CK                    P+ + YNTIID +CK   V++A +L+ +M
Sbjct: 163 CYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 222

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             K + P+VVTY+++I GFC     N+A  LF +M+ + + P+V TF++++D  CK G++
Sbjct: 223 VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRV 282

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            EA ++L +M++ G++PD  TY +L+DG+CL  +VN AK +F +M   G
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331



 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 141/253 (55%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  ++  M+    SP  V+   ++ G     K  D +  LF ++ S  + PD+YT SI
Sbjct: 213 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI-GLFNKMISEEINPDVYTFSI 271

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCKPDAI-------- 121
           L++ FCK GRV     VL  +++    PDVVT+ SL+       +V K  +I        
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 +YN +I+G CK   VD+A  LF +M  KN+ P+VVTY S+I G C +   + A 
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYAL 391

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM D+GV  + +T+N I+D LCKN ++D+A +LL  M   G++PD +TY  L+DG 
Sbjct: 392 KLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGL 451

Query: 236 CLTGRVNHAKELF 248
           C  GR+  A+ +F
Sbjct: 452 CKGGRLKDAQNIF 464



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K K  +    L+  + S G+ PD+ T+S LI+ FC +G+++    +
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     PDV TF+ L+                     +  KPD +TY +++DG C 
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V+KAK +F  M    V  NV +Y  +I GFC     +EA  LF EM  + + P+VVT
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK+GK+  A  L+D M   GV  D  TYN++LD  C   +V+ A  L   M+
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK 433

Query: 253 SMG 255
             G
Sbjct: 434 DEG 436



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M +   +   V S+NIM+    K K  D  ++LFK ++   + PD+ T++ 
Sbjct: 318 NKAKSIFNTMAQGGVTAN-VQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK G++S+   ++  +                +    D ITYN+I+D LCK   V
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHD--------------RGVPHDKITYNSILDALCKNHQV 422

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  KMKD+ ++P++ TYT +I G C      +A+ +F +++ +G    V T+ V+
Sbjct: 423 DKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVM 482

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C N   D+A +LL  M  +G  P+A TY  ++         + A++L   M + G
Sbjct: 483 IQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 154/296 (52%), Gaps = 58/296 (19%)

Query: 17  NEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N  +  F+++L +H +P PP   FN +L  L K KH+ T LSL +++   G+  D +T +
Sbjct: 42  NNLISSFNHLL-LHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFN 100

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           ILINCF ++G  S  F +  +IL+  + P  +TF +LIK                     
Sbjct: 101 ILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQ 160

Query: 115 ---------------VCK--------------------PDAITYNTIIDGLCKQGFVDKA 139
                          +CK                    P+A+ YN IID +CK   V+ A
Sbjct: 161 GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDA 220

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            +L+ +M  K + P+V TY ++I GF   +  N A  LF +M  + + PNV TFN+++D 
Sbjct: 221 FDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDG 280

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            CK GK+++A  +L +M++  ++PD  TYN+L+DG+C   +VN AK++F SM S G
Sbjct: 281 FCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336



 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++   +     +  + LF ++    + P++YT +IL++ FCK G+V+   VV
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKPDAI--------------TYNTIIDGLCK 132
           L  +++    PDVVT+ SL+       KV K   I               Y T+++G CK
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF +M+ + + PNVVTY+S+I G C       A +L  EM D+G  PN+VT
Sbjct: 354 IKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVT 413

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ I+D LCKN  +D+A +LL  +   G+RPD +TY  L+ G C +GR+  A+ +F
Sbjct: 414 YSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVF 469



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 22/237 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +   M++    P  V+  ++M G  + NK  +    +F  + S G+  ++  ++ 
Sbjct: 288 NDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINK-VNKAKDIFDSMASGGVIANVQIYTT 346

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           ++N FCK+  V     +   +      P+VVT++SLI  +CK                  
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY++I+D LCK   VDKA  L   +KD+ ++P++ TYT +I+G C +    +A+
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            +F +++ +G   +V  + V++   C  G  D+A +LL  M  +G  P+A TY  ++
Sbjct: 467 NVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IFD M         V  +  M+    K K  D  ++LF+ +    + P++ T+S 
Sbjct: 323 NKAKDIFDSMAS-GGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+  CK+GR+ +   ++  +      P++VT++S++  +CK                  
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY  +I GLC+ G ++ A+ +F  +  K    +V  YT +I+GFC    +++A 
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            L  +M D G  PN  T+ +++  L +  + D A  LL  MI  G+
Sbjct: 502 ALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 155/276 (56%), Gaps = 26/276 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     + +I  N+AL +F  M   HP P  V  F+ +L  +AK   Y+ V+SLF+
Sbjct: 49  ERLRSG----LHSIKFNDALTLFCDMAESHPLPSIVD-FSRLLIAIAKLNKYEAVISLFR 103

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
            L   G+  DLY+ + LI+CFC+  R+S     LG++++  F P +VTF SL+   C   
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 163

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            +P+ + YNTIID LC++G V+ A ++   MK   ++P+VVTY 
Sbjct: 164 RFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYN 223

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I    ++  W  + R+  +MM  G+ P+V+TF+ ++D   K G++ EA    + MIQ 
Sbjct: 224 SLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR 283

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            V P+  TYN+L++G C+ G ++ AK++   + S G
Sbjct: 284 SVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 22/248 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + D ++ +    P V  +N ++  L +    +T L + K +   G+ PD+ T++ L
Sbjct: 167 EAMSLVDQIVGL-GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSL 225

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I      G       +L  ++R   +PDV+TF++LI V                      
Sbjct: 226 ITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYN++I+GLC  G +D+AK++   +  K   PN VTY ++I G+C A   ++  +
Sbjct: 286 NPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMK 345

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M   GV  +  T+N +    C+ GK   A  +L  M+  GV PD +T+N LLDG C
Sbjct: 346 ILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLC 405

Query: 237 LTGRVNHA 244
             G++  A
Sbjct: 406 DHGKIGKA 413



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL     M+++   P  V+  +++ G    N+ Y+  +SL  ++   G  P++  ++ +I
Sbjct: 133 ALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA-MSLVDQIVGLGYEPNVVIYNTII 191

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
           +  C+ G+V+    VL  + +    PDVVT+ SLI                         
Sbjct: 192 DSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGIS 251

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD IT++ +ID   K+G + +AK+ + +M  ++V PN+VTY S+I G C     +EAK++
Sbjct: 252 PDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKV 311

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              ++ +G  PN VT+N +++  CK  ++D+   +L +M + GV  D FTYNTL  G+C 
Sbjct: 312 LNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQ 371

Query: 238 TGRVNHAKELFVSMESMG 255
            G+ + A+++   M S G
Sbjct: 372 AGKFSAAEKVLGRMVSCG 389



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +  +M +M   P  V+ +N ++  L  +  +     +   +   G+ PD+ T S 
Sbjct: 201 NTALDVLKHMKKMGIRPDVVT-YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK- 117
           LI+ + K G++         +++    P++VT+ SLI                   V K 
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+A+TYNT+I+G CK   VD   ++   M    V  +  TY ++ +G+C A  ++ A+
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++   M+  GV P++ TFN+++D LC +GK+ +A   L+ + +        TYN ++ G 
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGL 439

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +V  A  LF S+   G
Sbjct: 440 CKADKVEDAWYLFCSLALKG 459



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 22/177 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++    K K  D  + +   ++  G+  D +T++ L   +C+ G+ S    V
Sbjct: 322 PNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKV 381

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKP--------------DAITYNTIIDGLCK 132
           LGR++     PD+ TF  L+       K+ K                 ITYN II GLCK
Sbjct: 382 LGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCK 441

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQP 188
              V+ A  LF  +  K V P+V+TY +++ G      W EA  L+ +M  + G+ P
Sbjct: 442 ADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498



 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 48/98 (48%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y   +R   ++  +N+A  LF +M +    P++V F+ ++  + K  K +   SL   + 
Sbjct: 47  YRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLE 106

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+  D +++ TL+D FC   R++ A      M  +G
Sbjct: 107 MLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLG 144


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 154/272 (56%), Gaps = 26/272 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL SSG  DI     ++A+ +F  M+R  P P  +  F+ +   +AK K Y+ VLSL K
Sbjct: 51  ERL-SSGIADIK---KDDAVDLFQSMIRSRPLPSIID-FSRLFSAVAKTKQYELVLSLCK 105

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
           ++   G+   +YT SI+INCFC+  ++   F VLG+IL+  + PD VTF++L+  +C   
Sbjct: 106 QMELQGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEG 165

Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            +P+ +T NT+++GLC +  V +A+ L  +M +   +P+  TY 
Sbjct: 166 RVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYG 225

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            ++   C + +   A  L  +M D+ V+P VVT+N+I+D LCKNG  DEA SL + M + 
Sbjct: 226 PILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMERE 285

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           G++ D  TYN+L+ GFC  GR +   +L   M
Sbjct: 286 GIKADVITYNSLIGGFCNAGRWDDGAQLLRDM 317



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 73/139 (52%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I ++ +   + K    +    L  +M+ + +  ++ T + VI  FC       A  +
Sbjct: 79  PSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCFCRRRKLGFAFSV 138

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G +P+ VTF+ +++ LC  G++ EA  ++D M++  VRP+  T NTL++G CL
Sbjct: 139 LGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCL 198

Query: 238 TGRVNHAKELFVSMESMGC 256
             +V+ A+ L   M   GC
Sbjct: 199 KDQVSEAEALVDRMVEHGC 217



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L KN +YD  LSLF  +   G+  D+ T++ LI  FC  GR   G  +
Sbjct: 254 PQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQL 313

Query: 94  LGRILRSCFTPDVVTFTSLI 113
           L  ++    TP+VVTF++LI
Sbjct: 314 LRDMITRNITPNVVTFSALI 333


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 22/255 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+  F+ ML M P PPP   F+ +L  L KNKHY TV+SLFK+  S G+ P+L T +ILI
Sbjct: 77  AVASFNRMLLMRP-PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILI 135

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------K 117
           NCFC +  ++  F V   IL+  + PD +T  +LIK +C                    +
Sbjct: 136 NCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQ 195

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D ++Y T+I+GLCK G       L  K++  +VKP+VV YT++I   C      +A  L
Sbjct: 196 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDL 255

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G+ PNV T+N ++   C  G + EA SLL+ M    + PD +T+N L+D    
Sbjct: 256 YSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGK 315

Query: 238 TGRVNHAKELFVSME 252
            G+++ A  LF  M+
Sbjct: 316 EGKIDEAISLFEEMK 330



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L  H   P V  +  ++ CL KNK       L+  +   G+ P+++T++ LI  FC MG 
Sbjct: 224 LEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGN 283

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +   F +L  +      PDV TF              N +ID L K+G +D+A  LF +M
Sbjct: 284 LKEAFSLLNEMKLKNINPDVYTF--------------NILIDALGKEGKIDEAISLFEEM 329

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K KN+ PN+VTYTS+I G C  +    A  L  +M +QG+QP+V ++ +++D LCK G++
Sbjct: 330 KHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL 389

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + A      ++  G   +  TYN +++G C  G      +L   ME  GC
Sbjct: 390 ENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGC 439



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 15/204 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M ++    P V +FNI++  L K    D  +SLF+ +    +FP++ T++ L
Sbjct: 286 EAFSLLNEM-KLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK   +     +  ++      PDV ++T L+              D LCK G ++
Sbjct: 345 IDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILL--------------DALCKGGRLE 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK+ F  +  K    NV TY  +I G C A  + +   L  +M  +G  P+ +TF  I+
Sbjct: 391 NAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTII 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGV 221
             L +  + D+A   L  MI  G+
Sbjct: 451 CALFEKDENDKAEKFLREMIARGL 474


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 100/354 (28%)

Query: 2   RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
           R  SSG GD   I  N        +A+ +F  M++  P P  V  FN +L  +AK K +D
Sbjct: 6   RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFD 64

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
            V+SL +++    +   LYT++ILINCFC+  ++S    +LG++++              
Sbjct: 65  VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 124

Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
                                  + PD +TFT+LI                     + C+
Sbjct: 125 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 184

Query: 118 PDAITY-----------------------------------NTIIDGLCKQGFVDKAKEL 142
           P+ +TY                                   NTIID LCK   VD A  L
Sbjct: 185 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 244

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F +M+ K ++PNVVTY+S+I   C    W++A +L  +M+++ + PN+VTFN ++D   K
Sbjct: 245 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GK  EA  L D MI+  + PD FTYN+L++GFC+  R++ AK++F  M S  C
Sbjct: 305 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 358



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           FN ++  L K +H D  L+LFK + + G+ P++ T+S LI+C C  GR S          
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 91  -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
                            FV  G+          +++    PD+ T+ SL+          
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD +TYNT+I G CK   V+   ELF +M  + +  + VTYT++I
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G  +  D + A+++F +M+  GV P+++T+++++D LC NGK+++A  + D M +  ++
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 464

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D + Y T+++G C  G+V+   +LF S+   G
Sbjct: 465 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 497



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + ++N ++     +   D    +F+ + S   FPD+ T++ L
Sbjct: 310 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   +       D VT+T+LI             KV K       
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLC  G ++KA E+F  M+   +K ++  YT++I G C A   ++   
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 488

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNVVT+N ++  LC    + EA +LL  M + G  P++ TYNTL+    
Sbjct: 489 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 548

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 549 RDGDKAASAELIREMRS 565


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 152/297 (51%), Gaps = 58/297 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           ++AL  F++ML   P P  +  FN +L  + +  ++YD V+SL K++   GL P+  T +
Sbjct: 72  DDALASFNHMLHRKPLPCIIQ-FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILINCFC M  V  GF VL ++++    P ++TFT+LI                     +
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 115 VCKPDAITYNTIIDGLCKQG-----------------------------------FVDKA 139
            C+PD  TY TII+GLCK G                                    V++A
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++F  MK K + P VV+YTS+I+G C  + W EA  +  EM    + P++VTF++++D 
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            CK G + EA  +L  M + GV P+  TYN+L+ G+ L   V  A++LF  M + GC
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGC 367



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 131/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM     SP  VS  +++ G L     +    ++   + S  + PD+ T S+
Sbjct: 248 NEALDIFSYMKAKGISPTVVSYTSLIQG-LCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ FCK G V     VL  +      P+V+T+ SL+                     + 
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKPD  +Y+ +I+G C    +D+AK+LF +M  + + PN V+YT++I  FC      EA+
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR 426

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M   G  P++ T++V+++  CK G + +A  L   M    ++P+   Y  L+D  
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSM 486

Query: 236 CLTGRVNHAKELFVSM 251
           C +G +NHA++LF  +
Sbjct: 487 CKSGNLNHARKLFSEL 502



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+      P V ++  ++  L K         L K++   G  PD+ T+S L
Sbjct: 179 QALELFDDMV-ARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTL 237

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK   V+    +   +     +P VV++TSLI+ +C                    
Sbjct: 238 IDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNI 297

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T++ +ID  CK+G V +A+ +   M +  V+PNV+TY S++ G+    +  EA++
Sbjct: 298 MPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARK 357

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G +P+V +++++++  C   ++DEA  L + MI  G+ P+  +Y TL+  FC
Sbjct: 358 LFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFC 417

Query: 237 LTGRVNHAKELFVSMESMG 255
             G++  A+ELF  M + G
Sbjct: 418 QLGKLREARELFKDMHTNG 436



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++   +          LF  + + G  PD++++SILIN +C + R+     +
Sbjct: 334 PNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQL 393

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              ++    TP+ V++T+LI   C+                    PD  TY+ +++G CK
Sbjct: 394 FNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCK 453

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG++ KA  LF  M+   +KPN+V YT +I   C + + N A++LF E+   G+QP+V  
Sbjct: 454 QGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQI 513

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++ LCK G +DEA      M + G  P+ F+YN ++ GF      + A +L   M 
Sbjct: 514 YTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMR 573

Query: 253 SMG 255
             G
Sbjct: 574 DKG 576



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+      P V S++I++      K  D    LF  +   GL P+  +++ L
Sbjct: 354 EARKLFDVMIT-RGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VC 116
           I+ FC++G++     +   +  + + PD+ T++ L++                       
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP+ + Y  +ID +CK G ++ A++LF ++    ++P+V  YT++I G C     +EA  
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            F +M + G  PN  ++NVI+    ++     A  L+  M   G   D  T
Sbjct: 533 AFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 149/296 (50%), Gaps = 58/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHS 75
           +EAL +F  M RM P  P V  F ++LG + + KHY T +SL K + +S G+  D  T +
Sbjct: 58  DEALDLFQGMARMKP-LPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLN 116

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           I+INC C++  V+ GF VLG + +    P V+T T+LI                      
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKM 176

Query: 115 ---------------VCK--------------------PDAITYNTIIDGLCKQGFVDKA 139
                          +CK                    P+ + Y+TI+DGLCK G V +A
Sbjct: 177 WYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +M  K V+PN+VTY  +I+G C    W EA  L  EMM  G++P++   N+++D 
Sbjct: 237 LNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDA 296

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            CK GK+ +A S++  MI  G  PD FTYN+L+  +CL  ++N A  +F  M S G
Sbjct: 297 FCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRG 352



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L     +    SL   +   G+ PDL   +IL++ FCK G+V     V
Sbjct: 250 PNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSV 309

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           +G ++ +   PDV T+ SLI +                       PD + + ++I G CK
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCK 369

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              ++KA  L  +M      P+V T+T++I GFC A     AK LF+ M   G  PN+ T
Sbjct: 370 DKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQT 429

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             VI+D LCK   + EA SL   M +  +  +   Y+ LLDG C  G++N A ELF S+ 
Sbjct: 430 CAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLP 489

Query: 253 SMG 255
             G
Sbjct: 490 GKG 492



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L K+      L+L   +N  G+ P+L T++ LI   C  GR      +
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSL 274

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++    PD+                 N ++D  CK+G V +AK +   M      P
Sbjct: 275 LDEMMKMGMRPDLQML--------------NILVDAFCKEGKVMQAKSVIGFMILTGEGP 320

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY S+I  +C  N  NEA R+F  M+ +G  P++V F  ++   CK+  +++A  LL
Sbjct: 321 DVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLL 380

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M + G  PD  T+ TL+ GFC  GR   AKELF++M   G
Sbjct: 381 EEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYG 422



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++M    P +   NI++    K        S+   +  TG  PD++T++ L
Sbjct: 270 EAGSLLDEMMKM-GMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C   +++    V   ++     PD+V FTSLI   CK                   
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGF 388

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T+ T+I G C+ G    AKELFL M      PN+ T   ++ G C  N  +EA  
Sbjct: 389 VPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVS 448

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M    +  N+V +++++D +C  GK++ A  L   +   G++ + + Y  ++ G C
Sbjct: 449 LAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLC 508

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G ++ A++L ++ME  GC
Sbjct: 509 KQGSLDKAEDLLINMEENGC 528



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +  +M+ +    P V ++N ++         +  + +F  + S G  PD+   + L
Sbjct: 305 QAKSVIGFMI-LTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSL 363

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +CK   ++    +L  + +  F PDV T+T+LI   C+                   
Sbjct: 364 IHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T   I+DGLCK+  + +A  L   M+  N+  N+V Y+ ++ G C A   N A  
Sbjct: 424 VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+Q NV  + +++  LCK G +D+A  LL  M ++G  P+  TYN  + G  
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLL 543

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  + +    M   G
Sbjct: 544 TKKEIARSIKYLTIMRDKG 562



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 22/232 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ +F  M+      P +  F  ++    K+K+ +  + L + ++  G  PD+ T + 
Sbjct: 339 NEAMRVFHLMVS-RGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTT 397

Query: 77  LINCFCKMGR-------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LI  FC+ GR                   +    V+L  + +     + V+    ++   
Sbjct: 398 LIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSN 457

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + Y+ ++DG+C  G ++ A ELF  +  K ++ NV  YT +I+G C     ++A+
Sbjct: 458 LDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAE 517

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            L I M + G  PN  T+NV +  L    ++  +   L +M   G   DA T
Sbjct: 518 DLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAAT 569



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 22/208 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ + + M +M    P V+++  ++G   +         LF  ++  G  P+L T ++
Sbjct: 374 NKAMHLLEEMSKM-GFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAV 432

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +++  CK   +S    +   + +S    ++V ++ L+                     K 
Sbjct: 433 ILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKG 492

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + +   Y  +I GLCKQG +DKA++L + M++    PN  TY   ++G     +   + 
Sbjct: 493 LQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSI 552

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN 203
           +    M D+G   +  T   I++ L  N
Sbjct: 553 KYLTIMRDKGFSVDAATTEFIINYLSTN 580


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 100/354 (28%)

Query: 2   RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
           R  SSG GD   I  N        +A+ +F  M++  P P  V  FN +L  +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFD 102

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
            V+SL +++    +   LYT++ILINCFC+  ++S    +LG++++              
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
                                  + PD +TFT+LI                     + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 118 PDAITY-----------------------------------NTIIDGLCKQGFVDKAKEL 142
           P+ +TY                                   NTIID LCK   VD A  L
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F +M+ K ++PNVVTY+S+I   C    W++A +L  +M+++ + PN+VTFN ++D   K
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GK  EA  L D MI+  + PD FTYN+L++GFC+  R++ AK++F  M S  C
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           FN ++  L K +H D  L+LFK + + G+ P++ T+S LI+C C  GR S          
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 91  -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
                            FV  G+          +++    PD+ T+ SL+          
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD +TYNT+I G CK   V+   ELF +M  + +  + VTYT++I
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G  +  D + A+++F +M+  GV P+++T+++++D LC NGK+++A  + D M +  ++
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D + Y T+++G C  G+V+   +LF S+   G
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + ++N ++     +   D    +F+ + S   FPD+ T++ L
Sbjct: 348 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   +       D VT+T+LI             KV K       
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLC  G ++KA E+F  M+   +K ++  YT++I G C A   ++   
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 526

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNVVT+N ++  LC    + EA +LL  M + G  P++ TYNTL+    
Sbjct: 527 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 587 RDGDKAASAELIREMRS 603


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP V  FN +L   A  KHY T +SL  RL   G+ PD +T +I
Sbjct: 52  DDAVSQFNSMLCMRHTPP-VIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L+NCFC MG+++ GF VL +IL+  + P  +TFT+LIK +C                   
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 170

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D ++Y T+I+G+CK G    A +L  K+  +  KPNV  Y ++I   C     +EA 
Sbjct: 171 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 230

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM  +G+  NVV++N+++   CK+  +DEA +L   M Q  + P   TY +L+DG 
Sbjct: 231 GLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGL 290

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C +GR+++  EL   M   G
Sbjct: 291 CKSGRISYVWELIDEMHDRG 310



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 16/220 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NIM+    K+K  D  L+LFK ++   + P + T+  L++  CK GR+S+ + ++ 
Sbjct: 245 VVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELID 304

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +       DV              ITYN++IDGLCK G +D+A  LF KMKD   + + 
Sbjct: 305 EMHDRGIPADV--------------ITYNSLIDGLCKNGHLDRAIALFNKMKD--XRFDR 348

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +T+T ++ G C      +A+ +F +++ +    +V  +NV+++  CK G ++EA ++   
Sbjct: 349 LTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSK 408

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M  +G  P A T+  +++        + A++L   M + G
Sbjct: 409 MEDNGCIPSAVTFEIIINALFEKDENDKAEKLLHEMIARG 448



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 16/225 (7%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  +N ++  L K +       LF  + + G+  ++ +++I+I  FCK   V    
Sbjct: 206 TKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEAL 265

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   + +    P +VT+ SL+              DGLCK G +    EL  +M D+ +
Sbjct: 266 NLFKEMHQKNMVPTIVTYGSLM--------------DGLCKSGRISYVWELIDEMHDRGI 311

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
             +V+TY S+I G C     + A  LF +M D   + + +TF +++D LCK G++ +A  
Sbjct: 312 PADVITYNSLIDGLCKNGHLDRAIALFNKMKD--XRFDRLTFTILLDGLCKGGRLKDAQE 369

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   ++      D + YN +++G+C  G +  A  +   ME  GC
Sbjct: 370 VFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGC 414



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F  M      P V+ +  ++  F     ++ A  L   +  +G+QP+  T N+
Sbjct: 51  VDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +M+  C  G+++   S+L  +++ G +P   T+ TL+ G CL G+VN A
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKA 159


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 161/312 (51%), Gaps = 59/312 (18%)

Query: 2   RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK--NKHYDTVLSLF 59
           RL S  +   + I  +  +  F+++LR  P+   +  FN +LG L K  N HY T +SL 
Sbjct: 33  RLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSSIIE-FNKILGSLVKSNNNHYPTAISLS 91

Query: 60  KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-- 116
           +RL   G+ PD++T +ILINC+C M  ++  F ++ +IL+  + PD +TF +LIK +C  
Sbjct: 92  RRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLN 151

Query: 117 ------------------KPDAITYNTIIDGLCKQG------------------------ 134
                               D  +Y T+I+GLCK G                        
Sbjct: 152 GKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMY 211

Query: 135 -----------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
                       V  A EL+ +M  K + P+VVT++++I GFC      EA  LF EM+ 
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL 271

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           + + P+  TFN+++D LCK G +  A ++L +M++ GV P+  TY++L+DG+CL  +VN 
Sbjct: 272 KNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNK 331

Query: 244 AKELFVSMESMG 255
           AK +  ++  MG
Sbjct: 332 AKHVLNTISQMG 343



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++         +    LF+ +    + PD YT +IL++  CK G +     +
Sbjct: 241 PDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNM 300

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCK 132
           L  +++    P+VVT++SL+       +V K              P+A +Y T+I+G CK
Sbjct: 301 LVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCK 360

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF  M+ K + P+ VTY S+I G C +   + A  L  EM D G   N+ T
Sbjct: 361 IKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFT 420

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCKN  +D+A +L+  +   G++PD +T+N L+ G C  GR+ +A+++F  + 
Sbjct: 421 YNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLL 480

Query: 253 SMG 255
           S G
Sbjct: 481 SKG 483



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL   D++L +       S +  ++  L K     T L + ++++   +  ++  ++ +
Sbjct: 156 EALHFHDHVLALGFHLDQFS-YGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTI 214

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   V   + +  +++    +PDVVTF++LI                     K  
Sbjct: 215 IDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNI 274

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T+N ++D LCK+G +  AK + + M  + V PNVVTY+S++ G+C  N  N+AK 
Sbjct: 275 NPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKH 334

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   +   G  PN  ++  +++  CK   +DEA SL + M   G+ PD  TYN+L+DG C
Sbjct: 335 VLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLC 394

Query: 237 LTGRVNHAKELFVSMESMG 255
            +GR+++A EL   M   G
Sbjct: 395 KSGRISYAWELVDEMHDNG 413



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+ +    P   +FNI++  L K  +     ++   +   G+ P++ T+S L
Sbjct: 261 EAFGLFREMV-LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSL 319

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +C + +V+    VL  I +    P+  ++ ++I   CK                   
Sbjct: 320 MDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TYN++IDGLCK G +  A EL  +M D     N+ TY  +I   C  +  ++A  
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIA 439

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ DQG+QP++ TFN+++  LCK G++  A  +   ++  G   +A+TYN +++G C
Sbjct: 440 LVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLC 499

Query: 237 LTGRVNHAKELFVSMESMG 255
             G  + A+ L   M+  G
Sbjct: 500 KEGLFDEAEALLSKMDDNG 518



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P   S+  M+    K K  D  LSLF  +   G+ PD  T++ LI+  CK GR+S+ +
Sbjct: 344 AAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAW 403

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            ++  +  +    ++               TYN +ID LCK   VD+A  L  K+KD+ +
Sbjct: 404 ELVDEMHDNGQPANI--------------FTYNCLIDALCKNHHVDQAIALVKKIKDQGI 449

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P++ T+  +I G C       A+ +F +++ +G   N  T+N++++ LCK G  DEA +
Sbjct: 450 QPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEA 509

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LL  M  +G+ PDA TY TL+           A++L   M
Sbjct: 510 LLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 152/301 (50%), Gaps = 67/301 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT---VLSLFKRLN---STGLFPD 70
           ++AL +FD +L  H  P  V +FN +L  +A+ +   T    +SLF R+    S  + PD
Sbjct: 31  DDALKLFDELLP-HARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT--------------------------- 103
           L T+SIL  CFC++GR+ HGF   G IL++ +                            
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 104 ---------PDVVTFTSLIKV------------------------CKPDAITYNTIIDGL 130
                    P+VV+  +L+K                         C P+ +TYNTIIDGL
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   VD+A+ +   M DK VK +VVTY+++I G C A   + A+ +   M+D+GV+P+V
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 269

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+N I+D LCK   +D A  +L  MI  GV+PD  TYNT++DG C    V+ A  +   
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329

Query: 251 M 251
           M
Sbjct: 330 M 330



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 124/217 (57%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI+L   AK    D  + +F R++  GL PD+ T+ ILI+  CK+GRV    +   +++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
               TP+ V F              N+++ GLC     +KA+ELF +M D+ V+PNVV +
Sbjct: 507 NDGVTPNSVVF--------------NSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFF 552

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++   C       A+RL   M   GV+PNV+++N ++   C  G+ DEA+ LLD+M+ 
Sbjct: 553 NTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS 612

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G++PD  +Y+TLL G+C TGR+++A  LF  M   G
Sbjct: 613 VGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKG 649



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K +  D    + + +   G+  D+ T+S +I+  CK   V     V
Sbjct: 197 PNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGV 256

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     PDVVT+ ++I                     K  KPD +TYNTIIDGLCK
Sbjct: 257 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 316

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  +   M DK+VKP++ TY  +I G+    +W E  R   EM  +G+ P+VVT
Sbjct: 317 AQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVT 376

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++D LCKNGK  EA  +   MI+ G++P+   Y  LL G+   G +    +L   M 
Sbjct: 377 YSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMV 436

Query: 253 SMG 255
           + G
Sbjct: 437 ANG 439



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF  M+R     P V+ + I+L   A       +  L   + + G+ P+ Y  +I+
Sbjct: 392 EARKIFYCMIR-KGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIV 450

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  + K   +     +  R+ +   +PDVVT              Y  +ID LCK G VD
Sbjct: 451 LCAYAKKAMIDEAMHIFSRMSQHGLSPDVVT--------------YGILIDALCKLGRVD 496

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M +  V PN V + S++ G C  + W +A+ LF EM DQGV+PNVV FN IM
Sbjct: 497 DAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIM 556

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++  A  L+D M + GVRP+  +YNTL+ G CL GR + A +L   M S+G
Sbjct: 557 CNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N ++G  CLA     D    L   + S GL PDL ++  L+  +CK GR+ + +
Sbjct: 582 PNVISYNTLIGGHCLAGRT--DEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   +LR   TP               A+TY+TI+ GL       +AKEL+L M     
Sbjct: 640 CLFREMLRKGVTPG--------------AVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ 685

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           + ++ TY  ++ G C  N  +EA ++F  +  + ++PN++TF +++D L K G+  +A  
Sbjct: 686 QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMD 745

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L   +  HG+ P+  TY  ++      G ++    LF++ME  GC
Sbjct: 746 LFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGC 790



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K +  D    + + +   G+ PD+ T++ +I+  CK   V     V
Sbjct: 267 PDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGV 326

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     PD+ T+  LI                     +   PD +TY+ ++D LCK
Sbjct: 327 LQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------------------------- 166
            G   +A+++F  M  K +KPNV  Y  ++ G+                           
Sbjct: 387 NGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYI 446

Query: 167 -------YANDW--NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                  YA     +EA  +F  M   G+ P+VVT+ +++D LCK G++D+A    + MI
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             GV P++  +N+L+ G C   R   A+ELF  M   G
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQG 544



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  FN ++  L           L   +   G+ P++ +++ LI   C  GR      +
Sbjct: 547 PNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQL 606

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L          DV+    L    KPD I+Y+T++ G CK G +D A  LF +M  K V P
Sbjct: 607 L----------DVMVSVGL----KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTP 652

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
             VTY+++++G  +   ++EAK L++ M+  G Q ++ T+N+I++ LCK   +DEA  + 
Sbjct: 653 GAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIF 712

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +    +RP+  T+  ++D     GR   A +LF S+ S G
Sbjct: 713 QSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHG 754


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 147/300 (49%), Gaps = 57/300 (19%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           TI+ ++AL  F  M RM+P P  V  F   LG +AK K Y TV+ L  +++  G+   +Y
Sbjct: 71  TISVDDALASFYRMARMNPRPSIVE-FGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVY 129

Query: 73  THSILINCFCKMGRVSHGFVVLGRI----------------------------------- 97
           + +ILINC C++  V     V G++                                   
Sbjct: 130 SLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEM 189

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
           +RS   PDV+++ +LI                       CKP+ +TYNTIID LCK   V
Sbjct: 190 VRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLV 249

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A +   +M  + + P+ +TY S++ G C     NEA RLF  M   G +P+VVT+N+I
Sbjct: 250 NDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNII 309

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D L K+  +++A+  L  M+  G+ PD  TY T+L G C  G++N A  LF  ME  GC
Sbjct: 310 IDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGC 369



 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 135/245 (55%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L      +    LFKR+   G  PD+ T++I+I+   K   V+    
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
            L  ++     PDVVT+T+++                     K CKPD + YNTIID LC
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   V+ A E   +M D+ + PN VTY++++ GFC     +EA +LF EM+ + V PN +
Sbjct: 385 KDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTL 444

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF++++D LC+ G + EA  + + M + GV P+ +TYN L++G+CL  ++N A+++F  M
Sbjct: 445 TFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIM 504

Query: 252 ESMGC 256
              GC
Sbjct: 505 VGKGC 509



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 140/256 (54%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  M   +   P V ++NI++  L K++  +        +   G+ PD+ T++ 
Sbjct: 285 NEATRLFKRM-EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTT 343

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           +++  C +G+++    +  ++ +    PDVV + ++I  +CK                  
Sbjct: 344 ILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG 403

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+A+TY+TI+ G C  G +D+A +LF +M  +NV PN +T++ ++ G C     +EA+
Sbjct: 404 IPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEAR 463

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M ++GV+PN+ T+N +M+  C   KM+EA  + ++M+  G  PD  +YN L++G+
Sbjct: 464 WVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGY 523

Query: 236 CLTGRVNHAKELFVSM 251
           C + R++ AK L   M
Sbjct: 524 CNSRRMDKAKALLTQM 539



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 132/244 (54%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++  +L  L      +  + LFK++   G  PD+  ++ +I+  CK   V+    
Sbjct: 335 PPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAME 394

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
            L  ++     P+ VT+++++                     +   P+ +T++ ++DGLC
Sbjct: 395 FLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLC 454

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G V +A+ +F  M +K V+PN+ TY +++ G+C     NEA+++F  M+ +G  P++ 
Sbjct: 455 QEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLH 514

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++N++++  C + +MD+A +LL  M    + P+  TYNT++ G C  GR+  A+ELF  M
Sbjct: 515 SYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM 574

Query: 252 ESMG 255
            S G
Sbjct: 575 CSSG 578



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +++ +L         D    LFK +    + P+  T SIL++  C+ G VS    
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARW 464

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           V   +      P++ T+ +L+                     K C PD  +YN +I+G C
Sbjct: 465 VFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYC 524

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
               +DKAK L  +M  K + PN VTY ++++G CY     +A+ LF +M   G+ P ++
Sbjct: 525 NSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLM 584

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++++++ LCK+G +DEA  L   M +  + PD   Y  L++G  + G++  AK LF  +
Sbjct: 585 TYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKL 644

Query: 252 ESMG 255
            + G
Sbjct: 645 SADG 648



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M       P + ++N ++         +    +F+ +   G  PDL++++I
Sbjct: 460 SEARWVFETMTE-KGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNI 518

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +C   R+     +L ++               +K   P+ +TYNTI+ GLC  G +
Sbjct: 519 LINGYCNSRRMDKAKALLTQMS--------------VKKLTPNTVTYNTIMKGLCYVGRL 564

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ELF KM    + P ++TY+ ++ G C     +EA +LF  M ++ ++P+++ + ++
Sbjct: 565 LDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTIL 624

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++ +   GK++ A  L   +   G++P   TYN ++ G    G  + A ELF   + M
Sbjct: 625 IEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMM 682


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 165/356 (46%), Gaps = 101/356 (28%)

Query: 1   ERLKSSGEGDITTITPN---------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
           ER  +S  GD   I  N         +A+ +F  M++  P P  V  FN +L  +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR------------ 99
           ++ V+SL +++ + G+  DLYT+SI INCFC+  ++S    VL ++++            
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 100 -----------------------SCFTPDVVTFTSLI---------------------KV 115
                                    + PD  TFT+LI                     + 
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 116 CKPDAITYNTIIDGLCKQGFVD-----------------------------------KAK 140
           C+PD +TY T+++GLCK+G +D                                    A 
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M+ K ++PNVVTY S+I   C    W++A RL   M+++ + PNVVTFN ++D  
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K GK+ EA  L + MIQ  + PD  TYN L++GFC+  R++ AK++F  M S  C
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 14/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++  L K +H +  + LF  + + G+ P++ T++ LINC C  GR S    +L  +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P+VVTF              N +ID   K+G + +A++L  +M  +++ P+ +TY
Sbjct: 321 EKKINPNVVTF--------------NALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             +I GFC  N  +EAK++F  M+ +   PN+ T+N +++  CK  ++++   L   M Q
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            G+  +  TY T++ GF   G  + A+ +F  M S
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 29/243 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F +M+      P + ++N ++    K K  +  + LF+ ++  GL  +  T++ 
Sbjct: 380 DEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I  F + G      +V  +++ +    D++T++ L+  +C                   
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + +   YNT+I+G+CK G V +A +LF  +   ++KP+VVTY ++I G C      EA 
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEAD 555

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTL 231
            LF +M + G  PN  T+N ++    ++     ++ L+  M   G   DA T     N L
Sbjct: 556 DLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615

Query: 232 LDG 234
            DG
Sbjct: 616 HDG 618



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  + +++I+L  L      DT L +FK L  + +  +++ ++ +I   CK G+V   + 
Sbjct: 465 PTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWD 524

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +               F SL    KPD +TYNT+I GLC +  + +A +LF KMK+    
Sbjct: 525 L---------------FCSL--SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTL 567

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           PN  TY ++IR      D   +  L  EM   G   +  T +++ + L  +G++D++
Sbjct: 568 PNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDKS 623


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 148/267 (55%), Gaps = 34/267 (12%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ +L      PP+  F  +LG L K   Y T +SL +++   G+  +L T +ILINCF 
Sbjct: 47  FNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFS 106

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------VCK----------- 117
           ++G+    F V   IL+  + P+V+T T+LIK              +CK           
Sbjct: 107 QLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLL 166

Query: 118 ---------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                    P+ + YNTIID +CK   V++A +L+ +M  + + P+VVTY+++I GF   
Sbjct: 167 RRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIV 226

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               +A  LF +M+ + ++P+V TFN+++D  CK+GKM E  ++  +M++ G++P+  TY
Sbjct: 227 GKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTY 286

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
            +L+DG+CL  +VN A  +F +M   G
Sbjct: 287 CSLMDGYCLVKQVNKANSIFNTMAQGG 313



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++  L K       L L +R++   + P++  ++ +I+  CK+  V+  F +   +
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           +    +PDVVT+++LI                     +  KPD  T+N ++DG CK G +
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 264

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            + K +F  M  + +KPNVVTY S++ G+C     N+A  +F  M   GV P+  ++N++
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIM 324

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK  K+DEA +L   M    + P+  TY +L+DG C +G++++A +L   M   G
Sbjct: 325 INGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  ++  M+    SP  V+   ++ G     K  D +  LF ++    + PD+YT +I
Sbjct: 195 NEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI-DLFNKMILENIKPDVYTFNI 253

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G++  G  V   +++    P+VVT+ SL+              DG C    V
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM--------------DGYCLVKQV 299

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA  +F  M    V P+  +Y  +I GFC     +EA  LF +M  + + PNVVT+  +
Sbjct: 300 NKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSL 359

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +D LCK+GK+  A  L+D M   GV PD  TY+++LD  C   +V+ A  L   ++
Sbjct: 360 IDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLK 415



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 114/234 (48%), Gaps = 32/234 (13%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   +F  M++    P  V+  ++M G CL K    +   S+F  +   G+ PD  +++I
Sbjct: 266 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVK--QVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +IN FCK+ +V     +  ++      P+VVT+TSLI  +CK                  
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKD--------KNVKPNVVTYTSVIRGFCY 167
             PD ITY++I+D LCK   VDKA  L  K+KD        K    +V  YT +I+GFC 
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCV 443

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
              +NEA  L  +M D G  P+  T+ +I+  L K  + D A  LL  MI  G+
Sbjct: 444 KGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 155/312 (49%), Gaps = 61/312 (19%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M+R  P P  V  F+     +A  K ++ VL   K
Sbjct: 35  ERLRSG----IVDIKEDDAIDLFQEMIRSRPLPSLVD-FSRFFSGVASTKQFNLVLDFCK 89

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------- 113
           ++   G+  ++YT +I+INCFC+  +    + VLG++++  + PD  TF +LI       
Sbjct: 90  KMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLES 149

Query: 114 KV--------------CKPDAITYN----------------------------------- 124
           KV              C+P+ +TYN                                   
Sbjct: 150 KVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYS 209

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TIID LC+ G +D A  LF +M+ K +K ++VTY S++ G C A  WN+  +L  +M  +
Sbjct: 210 TIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSR 269

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+TFNV++D   K GK+ EA+ L   MI  G+ P+  TYN+L+DG+C+  R++ A
Sbjct: 270 KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEA 329

Query: 245 KELFVSMESMGC 256
             +   M    C
Sbjct: 330 NNMLDLMVRNNC 341



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 21/238 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +++ ++  L ++   D  +SLFK + + G+   L T++ L+   CK G+ + G  +L 
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLK 264

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +      P+V+TF  LI V                       P+ ITYN+++DG C Q 
Sbjct: 265 DMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQN 324

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A  +   M   N  P++VT+TS+I+G+C     +E  +LF ++  +G+  N VT++
Sbjct: 325 RLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYS 384

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++   C++GK++ A  L   M+  GV PD  TY  LLDG C  G++  A E+F  ++
Sbjct: 385 ILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 442



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN+++    K         L+K + + G+ P+  T++ L++ +C   R+S    +
Sbjct: 273 PNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++R+  +PD+VTFTSLIK              G CK   VD+  +LF K+  + +  
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIK--------------GYCKVKRVDEGMKLFRKISKRGLVA 378

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY+ +++GFC +     A+ LF EM+  GV P+V+T+ +++D LC NGK+++A  + 
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + + +  +  D   Y  +++G C  G+V  A  LF S+   G
Sbjct: 439 EDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKG 480



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FN ++  L         + L  R+   G  P++ T++ ++N  CK G  S    +
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++       DV T++++I                     K  K   +TYN+++ GLCK
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCK 252

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  +   +L   M  + + PNV+T+  +I  F       EA  L+ EM+ +G+ PN +T
Sbjct: 253 AGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTIT 312

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +MD  C   ++ EA+++LDLM+++   PD  T+ +L+ G+C   RV+   +LF  + 
Sbjct: 313 YNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKIS 372

Query: 253 SMG 255
             G
Sbjct: 373 KRG 375



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M+R + SP  V+ F  ++    K K  D  + LF++++  GL  +  T+SI
Sbjct: 327 SEANNMLDLMVRNNCSPDIVT-FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSI 385

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+  FC+ G++         I    F  ++V+   L     PD +TY  ++DGLC  G +
Sbjct: 386 LVQGFCQSGKL--------EIAEELF-QEMVSLGVL-----PDVMTYGILLDGLCDNGKL 431

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA E+F  ++   +  ++V YT +I G C      +A  LF  +  +GV+PNV+T+ V+
Sbjct: 432 EKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 491

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK G + EA+ LL  M + G  P+  TYNTL+      G +  + +L   M+S G
Sbjct: 492 ISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 550



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 21/184 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    ++   +    LF+ + S G+ PD+ T+ IL++  C  G++     +   +
Sbjct: 382 TYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 441

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S    D+V +T +I                     K  KP+ +TY  +I GLCK+G +
Sbjct: 442 QKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 501

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  KM++   +PN  TY ++IR      D   + +L  EM   G   +  +  ++
Sbjct: 502 SEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 561

Query: 197 MDEL 200
           +D L
Sbjct: 562 IDML 565



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I+L  L  N   +  L +F+ L  + +  D+  ++I+I   CK G+V   + +
Sbjct: 413 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNL 472

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +      P+V+T+T +I  +CK                    P+  TYNT+I    +
Sbjct: 473 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLR 532

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPNVV 191
            G +  + +L  +MK      +  +   VI     A  W  E +R       +G Q  ++
Sbjct: 533 DGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFKEPRRSPGVKRFRGTQAYLM 592

Query: 192 TFNVIMDEL 200
            FN I   L
Sbjct: 593 PFNTITASL 601


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 139/256 (54%), Gaps = 22/256 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ ML M P PPP   FN +L  L KNK Y TV+SLFK+    G+ PDL T SIL
Sbjct: 44  DAVASFNRMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSIL 102

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           INCFC +  ++  F V   IL+  + P+ +T  +LIK +C                    
Sbjct: 103 INCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGF 162

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D ++Y T+I+GLCK G       L  K++  +VKP++V YT++I   C      +A  
Sbjct: 163 QLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACD 222

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L+ EM+ +G+ PNV T+  ++   C  G + EA SLL+ M    + PD +T+N L+D   
Sbjct: 223 LYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALA 282

Query: 237 LTGRVNHAKELFVSME 252
             G+++ A  LF  M+
Sbjct: 283 KEGKIDEAMSLFEEMK 298



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L  H   P +  +  ++ CL KNK       L+  +   G+ P+++T++ LI+ FC MG 
Sbjct: 192 LEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGN 251

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +   F +L  +      PDV TF              N +ID L K+G +D+A  LF +M
Sbjct: 252 LKEAFSLLNEMKLKNINPDVYTF--------------NILIDALAKEGKIDEAMSLFEEM 297

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K KN+ PN+VTYTS+I G C  +    A  L  +M +QG+QPNV ++ +++D LCK G++
Sbjct: 298 KHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRL 357

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + A      ++  G   +  TYN +++G C  G      +L   ME  GC
Sbjct: 358 ENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGC 407



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 15/204 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M ++    P V +FNI++  LAK    D  +SLF+ +    +FP++ T++ L
Sbjct: 254 EAFSLLNEM-KLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSL 312

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK   +     +  ++      P+V ++T L+              D LCK G ++
Sbjct: 313 IDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILL--------------DALCKGGRLE 358

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK+ F  +  K    NV TY  +I G C A  + +   L  +M  +G  PN +TF  I+
Sbjct: 359 NAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTII 418

Query: 198 DELCKNGKMDEASSLLDLMIQHGV 221
             L +  + D+A   L  MI  G+
Sbjct: 419 CALLEKDENDKAEKFLREMIARGL 442


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 152/297 (51%), Gaps = 59/297 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK--NKHYDTVLSLFKRLNSTGLFPDLYTH 74
           N  +  F  MLRM P+P  V  FN +LG + K  N HY T +SL  +L   G+ P + T 
Sbjct: 39  NNDVSSFHRMLRMRPTPSIVE-FNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTF 97

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           +IL+NC+C +G ++  F +  +IL+  + P  +TF +LI  +C                 
Sbjct: 98  NILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIA 157

Query: 117 ---KPDAITYNTIIDGLCKQG-----------------------------------FVDK 138
                D ++Y T+I+GLCK G                                    V  
Sbjct: 158 LGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSD 217

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A +L+ +M  K + P+VVT+ S+I GFC      EA  LF EM+ + + P+V TF++++D
Sbjct: 218 AYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVD 277

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK+G +  A ++L +M++ GV PD  TY++L+DG+CL   VN AK +F +M  +G
Sbjct: 278 ALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLG 334



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL   D+++ +      VS +  ++  L K       L + K++    +  D+  ++I+
Sbjct: 147 EALHFHDHVIALGFHLDQVS-YRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNII 205

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           IN  CK   VS  + +   ++    +PDVVTF SLI                     K  
Sbjct: 206 INSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNI 265

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T++ ++D LCK G + +AK +   M  + V P+VVTY+S++ G+C  N+ N+AK 
Sbjct: 266 NPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKH 325

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M   GV P+  ++N++++ L K   +DEA SL   M   G+ PD  TYN+L+DG C
Sbjct: 326 VFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLC 385

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+++A +L   M + G
Sbjct: 386 KLGRISYAWQLVDEMHNNG 404



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F  M R+  +P    S+NIM+  L K K  D  LSLFK +   G+ PD  T++ 
Sbjct: 321 NKAKHVFSTMSRLGVAPHA-HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK+GR+S+ + ++  +  +    D+              +TYN++ID LCK   +
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADI--------------LTYNSLIDVLCKNHHI 425

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  K+KD+ ++P++ TY  +I G C       A+ +F +++ +G   N  T+N++
Sbjct: 426 DKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIM 485

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ LCK G  +EA  LL  M  +G+ PDA TY T++           A++L   M
Sbjct: 486 INGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 132/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+ +    P V +F+I++  L K+ +     ++   +   G+ PD+ T+S L
Sbjct: 252 EAFGLFHEMV-LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSL 310

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++ +C +  V+    V   + R    P   ++  +I                     K  
Sbjct: 311 MDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI 370

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TYN++IDGLCK G +  A +L  +M +  +  +++TY S+I   C  +  ++A  
Sbjct: 371 APDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIA 430

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ DQG+QP++ T+N+++D LCK G++  A  +   ++  G   +A+TYN +++G C
Sbjct: 431 LVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLC 490

Query: 237 LTGRVNHAKELFVSMESMG 255
             G  N A+ L   ME+ G
Sbjct: 491 KEGLFNEAEVLLSKMENNG 509


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 147/290 (50%), Gaps = 56/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ +L  +   PP   F  +LG L K K Y T LSL +++   G+ PD  T ++L+NCF
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDA 120
            ++G +   F V  +IL+  + PD VTFT LIK +C                    + D 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 121 ITYNTIIDGLCKQG-----------------------------------FVDKAKELFLK 145
           ++Y T+I+GLC+ G                                    V+ A +L+ +
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K + P+VVTY+S+I GFC       A  LF  M+   + PNV TF++++D  CK GK
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + EA ++L +M++  V+ D  TYN+L+DG+CL  +VN AK LF  M   G
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRG 333



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 140/254 (55%), Gaps = 24/254 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A  ++  M+    SP  V+  +++ G C+     Y   + LF R+ S  + P++YT S
Sbjct: 215 NDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKY--AVDLFNRMISDNINPNVYTFS 272

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI+ FCK G+V     VL  +++     DVVT+ SL+                     +
Sbjct: 273 ILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQR 332

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  +Y+ +I+G CK   VD+A +LF +M  K + PNVVTY S++ G C +   + A
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCA 392

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM D+G   N++T+N I+D +CKN  +D+A  LL  + + G++PD FTY  L++G
Sbjct: 393 LELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLING 452

Query: 235 FCLTGRVNHAKELF 248
            C  GR++ A+++F
Sbjct: 453 LCKVGRLDDAQKVF 466



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +   M++ +     V+  ++M G CL K    +   SLF  +   G+ PD++++SI
Sbjct: 286 EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVK--QVNKAKSLFNVMAQRGVTPDVWSYSI 343

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +IN FCK+  V     +   +   C            K   P+ +TYN+++DGLCK G  
Sbjct: 344 MINGFCKIKMVDEAMKLFEEM--HC------------KQIFPNVVTYNSLVDGLCKSGRT 389

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A EL  +M D+    N++TY S++   C  N  ++A  L  ++ ++G+QP++ T+ V+
Sbjct: 390 SCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVL 449

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LCK G++D+A  + + ++  G  P+ +TY +L++GFC  G  +    +   M+  GC
Sbjct: 450 INGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGC 509



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 22/226 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ M +     P V S++IM+    K K  D  + LF+ ++   +FP++ T++ 
Sbjct: 320 NKAKSLFNVMAQ-RGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           L++  CK GR S    ++  +       +++T+ S++  +CK                  
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY  +I+GLCK G +D A+++F  +  K   PN+ TYTS+I GFC    ++E  
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            +  +M D G  PN +T+ +++  L +  + D+A  LL  MI  G+
Sbjct: 499 AMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 146/296 (49%), Gaps = 56/296 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++ML   P P  +    ++   +   ++Y  V+SL K++   GL PD+YT SI
Sbjct: 76  DDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSI 135

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KV----------------- 115
           LI+CF  + RV   F V  ++++    PD VTF +LI    KV                 
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 116 CKPDAITYNTIIDGLCKQG-----------------------------------FVDKAK 140
           C+P   TY TII+GLCK G                                    V++A 
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F  MK K + P++ TY S+I+G C    W EA  L  EM    + PN+ TFNV++D +
Sbjct: 256 DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK GK+ EA  +   M + GV PD  TY++L+ G+ L   +  A++LF +M + GC
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGC 371



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         LFK++   G  P++ T++ILI+  CK   V+    +
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +     +PD+ T+ SLI+ +C                     P+  T+N ++D +CK
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +A+ +F  M +  V+P+VVTY+S++ G+    +  EA++LF  M+ +G +P+  +
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK  ++DEA  L + MI  G+ PD   YNTL+ G C  GR+  A++LF +M 
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 253 SMG 255
           S G
Sbjct: 438 SNG 440



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 132/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM +     P + ++N ++  L   + +    +L   + S  + P+++T ++
Sbjct: 252 NEALDIFSYM-KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G+VS    V   +      PDVVT++SL+                     K 
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKPDA +YN +I G CK   +D+AK+LF +M  + + P+ V Y ++I G C      EA+
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQ 430

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M   G  P++ T+++++D  CK G + +A  L  +M    ++PD   YN L+D  
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAM 490

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +  A++LF  +   G
Sbjct: 491 CKFGNLKDARKLFSELFVQG 510



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M  M   P  V+  ++M G   + +  +    LF  + + G  PD ++++I
Sbjct: 322 SEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE-ARKLFDAMITKGCKPDAFSYNI 380

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI  +CK  R+     +   ++    TPD V + +LI  +C+                  
Sbjct: 381 LIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNG 440

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+ ++DG CK+G++ KA  LF  M+   +KP++  Y  +I   C   +  +A+
Sbjct: 441 NLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDAR 500

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF E+  QG+ PNV  +  I++ LCK G +DEA      M   G  PD F+YN ++ GF
Sbjct: 501 KLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGF 560

Query: 236 CLTGRVNHAKELFVSMESMG 255
                 + A +L   M   G
Sbjct: 561 LQYKDESRAAQLIGEMRDRG 580



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M+    +P  V+ +N ++  L +         LFK ++S G  PDL+T+S+
Sbjct: 392 DEAKQLFNEMIHQGLTPDNVN-YNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSM 450

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G +   F +  R+++S +              KPD   YN +ID +CK G +
Sbjct: 451 LLDGFCKEGYLGKAFRLF-RVMQSTY-------------LKPDIAMYNILIDAMCKFGNL 496

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A++LF ++  + + PNV  YT++I   C     +EA   F  M   G  P+  ++NVI
Sbjct: 497 KDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVI 556

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +    +      A+ L+  M   G   +A T
Sbjct: 557 IRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 23/159 (14%)

Query: 24  DYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D    MH +   P + +++++L    K  +      LF+ + ST L PD+  ++ILI+  
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAM 490

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VCKPDA 120
           CK G +     +   +      P+V  +T++I                       C PD 
Sbjct: 491 CKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
            +YN II G  +     +A +L  +M+D+       T T
Sbjct: 551 FSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 153/267 (57%), Gaps = 22/267 (8%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           I  +  +++L +F +M++  P  P ++ F+ +L  ++K K YD V+ L++++   G+  +
Sbjct: 57  IRYMKLDDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHN 115

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------ 117
           L T +IL+NCFC+  ++S     LG++++    PD+VTF SL+   C+            
Sbjct: 116 LCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFD 175

Query: 118 --------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                   P+ + YNTIIDGLCK   VD A +L  +M+   ++P+ VTY S+I G C + 
Sbjct: 176 RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSG 235

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            W++A R+   M  + + P+V TFN ++D   K G++ EA  L + MI+  + PD  TY+
Sbjct: 236 RWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYS 295

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
            L+ G C+  R++ A+++F  M S GC
Sbjct: 296 LLIYGLCMYSRLDEAEQMFGFMVSKGC 322



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL---------- 67
           +AL +FD M+ M    P V  +N ++  L K+K  D  L L  R+   G+          
Sbjct: 169 DALYMFDRMVEM-GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 68  -------------------------FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF 102
                                    +PD++T + LI+   K GR+S    +   ++R   
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287

Query: 103 TPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            PD+VT++ LI                     K C PD +TY+ +I+G CK   V+   +
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF +M  + V  N VTYT +I+G+C A   N A+ +F  M+  GV PN++T+NV++  LC
Sbjct: 348 LFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLC 407

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            NGK+++A  +L  M + G+  D  TYN ++ G C  G V  A +L+ S+   G
Sbjct: 408 DNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKG 461



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++M   P  + + NI+L C  +       LS   ++   G  PD+ T   L+N FC+  R
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDR 166

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
           +     +  R++   + P+VV + ++I  +CK                    PDA+TYN+
Sbjct: 167 IYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNS 226

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GLC  G  D A  +   M  + + P+V T+ ++I         +EA+ L+ EM+ + 
Sbjct: 227 LISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRS 286

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P++VT+++++  LC   ++DEA  +   M+  G  PD  TY+ L++G+C + +V H  
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 246 ELFVSMESMG 255
           +LF  M   G
Sbjct: 347 KLFCEMSQRG 356



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +++ M+R     P + ++++++  L      D    +F  + S G FPD+ T+SI
Sbjct: 273 SEAEELYEEMIR-RSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSI 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK  +V HG  +   + +     + VT+T L              I G C+ G +
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVL--------------IQGYCRAGKL 377

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A+E+F  M    V PN++TY  ++ G C      +A  +  +M   G+  ++VT+N+I
Sbjct: 378 NVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNII 437

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  +CK G++ +A  L   +   G+ PD +TY  ++ G    G    A  LF  M+  G
Sbjct: 438 IRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDG 496


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 150/270 (55%), Gaps = 32/270 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ +L+ +P+PP +  FN +LG L K+KHY TVL L +++   G+ P+L   +I
Sbjct: 44  DDAVSLFNRLLQQNPTPPNIE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LIN FC++G +   F VL +IL+  + P+ +T  +LIK +C                   
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 117 -----------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD  T+  ++DG CK+G V +AK +   M  + +KP VVTY S++ G+
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 N+AK +F  M   GV P++ +++++++  CK   MDEA  LL  M    + P+ 
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNV 282

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY++L+DG C +G++++A +L   M   G
Sbjct: 283 VTYSSLIDGLCKSGKISYALKLVDEMHDRG 312



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 138/261 (52%), Gaps = 30/261 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT---------VLSLFKRLNSTGLF 68
            A  +   +L+M   P  ++   ++ G     K +D           + LF ++    + 
Sbjct: 115 SAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENIN 174

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---- 117
           PD+YT +IL++ FCK GRV     VL  ++     P VVT+ SL+       +V K    
Sbjct: 175 PDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSI 234

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD  +Y+ +I+G CK   +D+A EL  +M  K + PNVVTY+S+I G C 
Sbjct: 235 FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +   + A +L  EM D+G  PN+VT++ I+D LCKN ++D A +LL  M   G++P+ +T
Sbjct: 295 SGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYT 354

Query: 228 YNTLLDGFCLTGRVNHAKELF 248
           Y  L+ G C +G++  A+++F
Sbjct: 355 YTILIKGLCQSGKLEDARKVF 375



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 14/231 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+ +    P V ++N ++      K  +   S+F  +   G+ PD+ ++SILIN FCK+ 
Sbjct: 202 MMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIK 261

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +     +L  +      P+VVT++SLI              DGLCK G +  A +L  +
Sbjct: 262 MMDEAMELLKEMHHKQIIPNVVTYSSLI--------------DGLCKSGKISYALKLVDE 307

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M D+   PN+VTY+S++   C  +  + A  L  +M +QG+QPN+ T+ +++  LC++GK
Sbjct: 308 MHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGK 367

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +++A  + + ++  G   + +TY  ++ GFC  G  + A  L   ME  GC
Sbjct: 368 LEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGC 418



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M ++  SP  + S++I++    K K  D  + L K ++   + P++ T+S 
Sbjct: 229 NKAKSIFNTMAQLGVSPD-IQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSS 287

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+  CK G++S+   ++  +      P++VT++S++  +CK                  
Sbjct: 288 LIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TY  +I GLC+ G ++ A+++F  +  K    NV TYT +I+GFC    ++EA 
Sbjct: 348 IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M D G  PN  T+ +I+  L K  + + A  LL  MI+          N L+   
Sbjct: 408 TLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASI 467

Query: 236 CLTG 239
            +TG
Sbjct: 468 WVTG 471



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A  LF ++  +N  P  + +  ++     +  ++    L  +M  +G++PN+V  N+
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +++  C+ G +  A S+L  +++ G +P+  T NTL+ G CL G++ H K   V
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKI-HDKHCIV 155



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%)

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L + GFV  +K+        N   N + Y S    F   ND ++A  LF  ++ Q   P 
Sbjct: 2   LLRYGFVPVSKKFHSFQFLINTHFNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPP 61

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            + FN I+  L K+        L   M   G++P+    N L++ FC  G +  A  +  
Sbjct: 62  NIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLT 121

Query: 250 SMESMG 255
            +  MG
Sbjct: 122 KILKMG 127


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 150/281 (53%), Gaps = 44/281 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHS 75
           + A+  F+ M ++  +P  V  FN +L  L K K HY TVLSL  ++ S G+ PDL+T S
Sbjct: 48  DNAVLSFNRMRQIRQTPSIVE-FNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 106

Query: 76  ILINCFCKMGRVSHGFVVLGRILRS--CFTPDV-------------------VTFTSLI- 113
           ILINC+C +G+++  F V  +IL+   C    V                   VT+  LI 
Sbjct: 107 ILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILIN 166

Query: 114 --------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                               K+   + + Y+TIIDGLCK   V  A  L+ +M  K + P
Sbjct: 167 GLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPP 226

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVT++S+I GFC    + +A RLF EM+ + + P+  TFN+++D LCK GK+ EA +++
Sbjct: 227 TVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVI 286

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +M++ GV P   TYNTL+DG+CL   V  AK +   +  M
Sbjct: 287 AVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRM 327



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +   + RM  +P    S+NIM+    K K  D  L LF  +   G+ P   T++ L
Sbjct: 316 KAKHVLSIISRMRVAPNS-RSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSL 374

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+ + + ++  +  +C   D+VT              YN++ID  CK   VD
Sbjct: 375 IDGLCKAGRIPYAWELVDEMHNNCIPADIVT--------------YNSLIDVFCKNQHVD 420

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  L  K+K+  ++PN+ TY  +I G C       A+ +F +++ +G   N  T+N+++
Sbjct: 421 KAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMI 480

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + LCK G  DEA  LL  M  +G+ PDA TY T++           A++L   M
Sbjct: 481 NGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREM 534



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 22/258 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL   D++L +      V+ + I++  L K       L + +++    +  ++  +S 
Sbjct: 140 NEALLFHDHVLALGFHLNHVT-YGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 198

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  CK   V+  + +   ++     P VVTF+SLI                     K 
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA T+N ++D LCK+G + +AK +   M  + V+P VVTY +++ G+C  N+  +AK
Sbjct: 259 INPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAK 318

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   +    V PN  ++N++++  CK   +DEA  L   M   G+ P   TYN+L+DG 
Sbjct: 319 HVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGL 378

Query: 236 CLTGRVNHAKELFVSMES 253
           C  GR+ +A EL   M +
Sbjct: 379 CKAGRIPYAWELVDEMHN 396



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ M+ M    P   +FNI++  L K        ++   +   G+ P + T++ L
Sbjct: 246 DAFRLFNEMV-MKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTL 304

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +C +  V     VL  I R    P+  ++  +I   CK                   
Sbjct: 305 MDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI 364

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +TYN++IDGLCK G +  A EL  +M +  +  ++VTY S+I  FC     ++A  
Sbjct: 365 APHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIA 424

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ + G+QPN+ T+N+++D LCK G++  A  +   ++  G   +A+TYN +++G C
Sbjct: 425 LVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLC 484

Query: 237 LTGRVNHAKELFVSMESMG 255
             G  + A+ L   ME  G
Sbjct: 485 KEGLFDEAEVLLSKMEDNG 503



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++ H   P + ++NI++  L K         +F+ L   G   + +T++I+IN  CK G 
Sbjct: 429 IKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGL 488

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                V+L ++  +                 PDA+TY TII  L  +   +KA++L  +M
Sbjct: 489 FDEAEVLLSKMEDNGII--------------PDAVTYETIIQALFHKDENEKAQKLLREM 534

Query: 147 KDKNVKPNVVTYTSVIR 163
               V   VV Y   IR
Sbjct: 535 ----VIKGVVVYAFEIR 547


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 143/298 (47%), Gaps = 57/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++AL  F+ ML MHP PP +  F  +L  + K K Y TVLSL ++++S G+  ++YT 
Sbjct: 54  TLDDALSSFNRMLHMHP-PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 75  SILINCFCKMGRVSHGFVVLGRILR----------------------------------- 99
           ++LIN FC + RV+  F VL +IL+                                   
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
             F PDVV + +LI                       C+PD + Y T+I  LCK     +
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M  K + PN+VT  S++   C   +W     L  EM+D  + PN ++   ++D
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK G + +A  ++D+M Q GV PD  TY  L+DG CL   ++ A ++F  M   GC
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGC 350



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVS--SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +A  +F  M+    SP  V+  S    L  L + KH +T+L+    +  + + P+  + +
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLN---EMVDSKIMPNAISLT 288

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            +++  CK G V+    V+  + +S   PDVVT+T+LI                     K
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C P+  +YNT+I+G CK   +DKA  LF +M  + + PN VTY ++I G C+     +A
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM+  G  P++VT+ +++D LCKN  +D+A +LL  +    + PD   Y  ++DG
Sbjct: 409 IALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDG 468

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  G +  A++LF ++ S G
Sbjct: 469 MCRAGELEDARDLFSNLSSKG 489



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 26/263 (9%)

Query: 4   KSSGEGDITTITP-----------NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY 52
           +S  E D+ T T            +EA+ +FD M+      P V S+N ++    K +  
Sbjct: 312 QSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVH-KGCAPNVFSYNTLINGYCKIERM 370

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D  + LF+ +    L P+  T++ LI+  C +GR+    + L R + +C           
Sbjct: 371 DKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA-IALFREMVACGQI-------- 421

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TY  ++D LCK   +DKA  L   ++  N+ P++  YT VI G C A +  
Sbjct: 422 -----PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELE 476

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+ LF  +  +G++PNV T+N++   LCK G +DEA+ L   M ++    D  TYNT+ 
Sbjct: 477 DARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTIT 536

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF      + A +L   M + G
Sbjct: 537 QGFLRNNETSRAIQLLEEMLARG 559



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 23/221 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M R    P  V+ +N ++  L         ++LF+ + + G  PDL T+ I
Sbjct: 371 DKAMYLFEEMCRQKLIPNTVT-YNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRI 429

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK   +     +L  I  S   PD+  +T +I                     K 
Sbjct: 430 LLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG 489

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+  TYN +  GLCK+G +D+A +LF++M +     +  TY ++ +GF   N+ + A 
Sbjct: 490 LKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAI 549

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG-KMDEASSLLDL 215
           +L  EM+ +G   +V T  +++  L  +G    EA  L D+
Sbjct: 550 QLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDM 590



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%)

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           + + N  ++A   F  M+     P++V F  I+  + K  +     SL   M   G+  +
Sbjct: 49  YLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHN 108

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +T N L++ FC   RVN A  +   +  +GC
Sbjct: 109 VYTLNVLINSFCHLNRVNFAFSVLAKILKLGC 140


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 58/297 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHS 75
           +EAL +F  M  M P  P V  F ++LG + + KHY T +SL K + +S G+  D  T +
Sbjct: 58  DEALDLFQGMASMKP-LPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADTITLN 116

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           I+INC C++  V+ GF VLG + +    P V+T T+LI                      
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKM 176

Query: 115 ---------------VCK--------------------PDAITYNTIIDGLCKQGFVDKA 139
                          +CK                    P+ + Y+TI+DGLCK G V +A
Sbjct: 177 RYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +M  K V+PN+VTY  +I+G C    W E   L  EM+  G++ ++ T N+++D 
Sbjct: 237 LNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDA 296

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            CK GK+ +A S++  MI  G  PD FTYN+L+  +CL  ++N A  +F  M S GC
Sbjct: 297 FCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGC 353



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L     +    SL   +   G+  DL T +IL++ FCK G+V     V
Sbjct: 250 PNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSV 309

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +G ++ +   PDV T+ SLI +                     C PD + + ++I G CK
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCK 369

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              ++K   L  +M      P+VVT+T++I GFC A     AK LF+ M   G  PN+ T
Sbjct: 370 DKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQT 429

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             VI+D LCK   + EA SL + M +  +  +   Y+ LLDG C  G++N A ELF S+ 
Sbjct: 430 CAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLP 489

Query: 253 SMG 255
             G
Sbjct: 490 GKG 492



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   + D M++M      + + NI++    K        S+   +  TG  PD++T++ L
Sbjct: 270 ETGSLLDEMIKMGMRLD-LQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C   +++    V   ++     PD+V FTSLI   CK                   
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGF 388

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+ T+I G C+ G    AKELFL M      PN+ T   ++ G C  N  +EA  
Sbjct: 389 VPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVS 448

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M    +  N+V +++++D +C  GK++ A  L   +   G++ + +TY  ++ G C
Sbjct: 449 LAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLC 508

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G ++ A++L ++ME  GC
Sbjct: 509 KQGSLDKAEDLLINMEENGC 528



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +  +M+ +    P V ++N ++         +  + +F  + S G  PD+   + L
Sbjct: 305 QAKSVIGFMI-LTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSL 363

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +CK   ++    +L  + +  F PDVVT+T+LI   C+                   
Sbjct: 364 IHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T   I+DGLCK   + +A  L   M+  N+  N+V Y+ ++ G C A   N A  
Sbjct: 424 VPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+Q NV T+ +++  LCK G +D+A  LL  M ++G  PD  TYN  + G  
Sbjct: 484 LFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLL 543

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  + +    M   G
Sbjct: 544 TKKEIARSIKYLTIMRDKG 562



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +   ++  L    +    + L   +       D+YT+ +LIN  CK G        
Sbjct: 145 PTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEW 204

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL-- 130
           L ++    + P+VV +++++                     K  +P+ +TY  +I GL  
Sbjct: 205 LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCN 264

Query: 131 ---------------------------------CKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                            CK+G V +AK +   M      P+V T
Sbjct: 265 FGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFT 324

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+I  +C  N  NEA R+F  M+ +G  P++V F  ++   CK+  +++   LL+ M 
Sbjct: 325 YNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMA 384

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G  PD  T+ TL+ GFC  GR   AKELF++M   G
Sbjct: 385 KMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYG 422



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 22/232 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ +F  M+      P +  F  ++    K+K+ + V+ L + +   G  PD+ T + 
Sbjct: 339 NEAMRVFHLMVS-RGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTT 397

Query: 77  LINCFCKMGR-------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LI  FC+ GR                   +    V+L  + +     + V+    ++   
Sbjct: 398 LIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSN 457

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + Y+ ++DG+C  G ++ A ELF  +  K ++ NV TYT +I+G C     ++A+
Sbjct: 458 LDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAE 517

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            L I M + G  P+  T+NV +  L    ++  +   L +M   G   DA T
Sbjct: 518 DLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAAT 569



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 24  DYMLRMHP--SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +  L MH     P + +  ++L  L K       +SL + +  + L  ++  +SIL++  
Sbjct: 413 ELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGM 472

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C  G+++  + +   +       +V T+T +IK              GLCKQG +DKA++
Sbjct: 473 CSAGKLNAAWELFSSLPGKGLQINVYTYTIMIK--------------GLCKQGSLDKAED 518

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L + M++    P+  TY   ++G     +   + +    M D+G   +  T  + ++ L 
Sbjct: 519 LLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYLS 578

Query: 202 KN 203
            N
Sbjct: 579 TN 580


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 153/299 (51%), Gaps = 57/299 (19%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           T   ++A+  F++M  +HP+P     FN +L  L   K Y T +SL+K++  + + PD +
Sbjct: 36  THNADDAVSQFNHMFHVHPTPHTFH-FNKILISLVNVKRYPTAISLYKQMELSEVEPDYF 94

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T +I+INCFC  G+V   F  + +IL+  + P+ +T  +L+K                  
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKV 154

Query: 115 ------------------VCK--------------------PDAITYNTIIDGLCKQGFV 136
                             VCK                    P+ + Y+ IID LCK   V
Sbjct: 155 LAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLV 214

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +L+ +M  K + P+VVTY+ ++ GFC     N A  L  EM+ + + P++ T+ ++
Sbjct: 215 DEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTIL 274

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D LCK GK+ EA ++L +M++  V  D   Y+TL+DG+CL   VN+AK +F +M  MG
Sbjct: 275 VDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMG 333



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++         +  + L   +    + PD+YT++IL++  CK G+V     V
Sbjct: 231 PDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENV 290

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
           L  ++++C   DVV +++L+   C                     PD   Y+ +I+GLCK
Sbjct: 291 LAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK 350

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF ++  KN+ P+ VTYTS+I   C +   +    LF EM+D+G  P+V+T
Sbjct: 351 IKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVIT 410

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCKNG +D A +L + M    +RP+ +T+  LLDG C  GR+ +A E F  + 
Sbjct: 411 YNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLL 470

Query: 253 SMG 255
           + G
Sbjct: 471 TKG 473



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +F  M +M  +P  V  ++IM+  L K K  D  L+LF+ ++   + PD  T++ 
Sbjct: 320 NNAKRVFYTMTQMGVTPD-VHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+C CK GR+S+ + +   +L     PDV              ITYN +ID LCK G +
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDV--------------ITYNNLIDALCKNGHL 424

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  LF KMKD+ ++PNV T+T ++ G C       A   F +++ +G   NV T+ V+
Sbjct: 425 DRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVM 484

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK G +DEA +L   M  +G   DA T+  ++  F      + A++L   M + G
Sbjct: 485 INGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   + N ++  L         L    ++ + G      ++ ILIN  CK+G       +
Sbjct: 126 PNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRL 185

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L RI R    P+VV ++ +I ++CK                    PD +TY+ ++ G C 
Sbjct: 186 LRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCI 245

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYT--------------------------------- 159
            G +++A +L  +M  +N+ P++ TYT                                 
Sbjct: 246 VGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVV 305

Query: 160 --SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
             +++ G+C  N+ N AKR+F  M   GV P+V  ++++++ LCK  ++DEA +L + + 
Sbjct: 306 YSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH 365

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Q  + PD  TY +L+D  C +GR+++  +LF  M   G
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRG 403


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 92/331 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F  M++  P P  V  F+ +L  +AK K +D V+S  +++   G+  +LYT++I
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 77  LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
           +INC C+  ++S    +LG++++                                     
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG------ 134
           + PD VTFT+L+                     K C+PD +TY  +I+GLCK+G      
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 135 -----------------------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                                         VD A  LF +M +K ++P+V TY+S+I   
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    W++A RL  +M+++ + PNVVTFN ++D   K GK+ EA  L D MIQ  + P+ 
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            TYN+L++GFC+  R++ A+++F  M S  C
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++ ++  L K +H D  L+LF  +++ G+ PD++T+S LI+C C  GR S    +L  +L
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 99  -----------------------------------RSCFTPDVVTFTSLI---------- 113
                                              +    P++VT+ SLI          
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD +TYNT+I+G CK   V    ELF  M  + +  N VTYT++I
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            GF  A+D + A+ +F +M+  GV PN++T+N ++D LCKNGK+++A  + + + +  + 
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           PD +TYN + +G C  G+V    +LF S+   G
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M++     P + ++N ++     +   D    +F  + S    PD+ T++ L
Sbjct: 328 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN FCK  +V  G  +   + R     + VT+T+LI                        
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYNT++DGLCK G ++KA  +F  ++   ++P++ TY  +  G C A    +   
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+P+V+ +N ++   CK G  +EA +L   M + G  PD+ TYNTL+    
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 567 RDGDKAASAELIKEMRS 583



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D    +FK++ S G+ P++ T++ L++  CK G++    VV   + +S   PD+ T    
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT---- 487

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                     YN + +G+CK G V+   +LF  +  K VKP+V+ Y ++I GFC      
Sbjct: 488 ----------YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  LFI+M + G  P+  T+N ++    ++G    ++ L+  M       DA TY  + 
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597

Query: 233 D 233
           D
Sbjct: 598 D 598



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 17/177 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L KN   +  + +F+ L  + + PD+YT++I+    CK G+V  G+ +
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507

Query: 94  LGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                          F SL +K  KPD I YNT+I G CK+G  ++A  LF+KMK+    
Sbjct: 508 ---------------FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPL 552

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           P+  TY ++IR      D   +  L  EM       +  T+ ++ D L  +G++D+ 
Sbjct: 553 PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLDKG 608


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 139/260 (53%), Gaps = 25/260 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+  F+ ML M P PPP   FN +L  L KNK Y TV+SLFK+    G+ PDL T SI
Sbjct: 40  HHAVASFNLMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSI 98

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LINCFC    ++  F V   IL+  F PD +T  +LIK +C                   
Sbjct: 99  LINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQG 158

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D ++Y T+I+GLCK G       L  K++  +VKP+VV Y ++I   C      +A 
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDAC 218

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++ EM+ +G+ P+VVT+  ++   C  GKM EA SLL+ M    + PD +T++ L+D  
Sbjct: 219 DVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDAL 278

Query: 236 CLTGR---VNHAKELFVSME 252
              G+   V+ A  LF  M+
Sbjct: 279 GKEGKKKMVDEAMSLFEEMK 298



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 17/233 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L  H   P V  +N ++  L KNK       ++  +   G+ PD+ T++ LI+ FC MG+
Sbjct: 189 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGK 248

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG---FVDKAKELF 143
           +   F +L  +      PDV TF+ LI              D L K+G    VD+A  LF
Sbjct: 249 MKEAFSLLNEMKLKNINPDVYTFSVLI--------------DALGKEGKKKMVDEAMSLF 294

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            +MK KN+ P++VTY S+I G C  +    A  L  EM + G+QP+V ++ +++D LCK 
Sbjct: 295 EEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKG 354

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G+++ A      ++  G   + + YN +++G C  G    A +L   ME  GC
Sbjct: 355 GRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGC 407



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 17/191 (8%)

Query: 34  PPVSSFNIM---LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V +F+++   LG   K K  D  +SLF+ +    + PD+ T++ LI+  CK   +   
Sbjct: 266 PDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERA 325

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L  +      PDV ++T L+              DGLCK G ++ AKE F  +  K 
Sbjct: 326 IALLKEMKEHGIQPDVYSYTILL--------------DGLCKGGRLEIAKEFFQHLLVKG 371

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
              NV  Y  +I G C A  + EA  L  +M  +G  PN +TF  I+  L +  + D+A 
Sbjct: 372 CHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAE 431

Query: 211 SLLDLMIQHGV 221
            +L  MI  G+
Sbjct: 432 KILREMIARGL 442


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 149/261 (57%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +++L +F +M++  P  P ++ F+ +L  ++K K YD V+ L++++   G+  +L T +I
Sbjct: 63  DDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L+NCFC+  ++S     LG++++    P +VTF SL+   C                   
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ + YNTIIDGLCK   VD A +L  +M+   + P+VVTY S+I G C +  W++A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+   M  + + P+V TFN ++D   K G++ EA    + MI+  + PD  TY+ L+ G 
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+  R++ A+E+F  M S GC
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGC 322



 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 140/294 (47%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+ M    P V  +N ++  L K+K  D  L L  R+   G+ PD+ T++ L
Sbjct: 169 DALYMFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 78  INCFC-----------------------------------KMGRVSHGFVVLGRILRSCF 102
           I+  C                                   K GRVS        ++R   
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287

Query: 103 TPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            PD+VT++ LI                     K C PD +TY+ +I+G CK   V+   +
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF +M  + V  N VTYT +I+G+C A   N A+ +F  M+  GV PN++T+NV++  LC
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLC 407

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            NGK+++A  +L  M ++G+  D  TYN ++ G C  G V  A +++ S+   G
Sbjct: 408 DNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 22/229 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA   ++ M+R     P + ++++++  L      D    +F  + S G FPD+ T+SI
Sbjct: 273 SEAEEFYEEMIR-RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN +CK  +V HG  +   + +     + VT+T LI+  C+                  
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ ITYN ++ GLC  G ++KA  +   M+   +  ++VTY  +IRG C A +  +A 
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            ++  +  QG+ P++ T+  +M  L K G   EA +L   M + G+ P+
Sbjct: 452 DIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D + +LF  M      P++  ++ ++        ++    L+ +M   G+  N+ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C+  ++  A S L  MI+ G  P   T+ +LL+GFC   RV  A  +F  M  MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 38/275 (13%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY----- 72
           +A  +F  +LR +P+PP +  FN +LG L K+KHY TVLSL +++   G+ P L+     
Sbjct: 59  DAFSLFSRLLRQNPTPPAIE-FNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHP 117

Query: 73  -----------THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--- 117
                      T + LI   C  G++    +    ++   F  D V + +LI  +CK   
Sbjct: 118 HQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGE 177

Query: 118 -----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                            P+ + Y+TIIDG+CK   V+ A +L+ +M  K + PNVVTY++
Sbjct: 178 TRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSA 237

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I GF       +A  LF +M+ + ++P+V TFN+++D  CK+GKM E  ++  +M++ G
Sbjct: 238 LISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQG 297

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++P+  TY +L+DG+CL   VN AK +  +M   G
Sbjct: 298 IKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332



 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 138/253 (54%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP  V+   ++ G     +  D +  LF ++    + PD+YT +I
Sbjct: 214 NDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI-DLFNKMILENIKPDVYTFNI 272

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ FCK G++  G  V   +++    P+VVT+ SL+                     + 
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +YN +IDG CK   VD+A  LF +M  K++ P+VVTY S+I G C     + A 
Sbjct: 333 VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYAL 392

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM D+GV P+++T++ I+D LCKN ++D+A +LL  +   G+RP+ +TY  L+DG 
Sbjct: 393 KLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGL 452

Query: 236 CLTGRVNHAKELF 248
           C  GR+  A  +F
Sbjct: 453 CKGGRLEDAHNIF 465



 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  + K+KH +    L+  + S G+ P++ T+S LI+ F  +G++     +
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++              ++  KPD  T+N ++DG CK G + + K +F  M  + +KP
Sbjct: 255 FNKMI--------------LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP 300

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY S++ G+C   + N+AK +   M  +GV P++ ++N+++D  CK  K+DEA +L 
Sbjct: 301 NVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLF 360

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M    + PD  TYN+L+DG C  G++++A +L   M   G
Sbjct: 361 KEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   +F  M++    P  V+  ++M G CL K    +   S+   ++  G+ PD+ +++I
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE--VNKAKSILYTMSQRGVNPDIQSYNI 342

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK+ +V     +   +      PDVVT              YN++IDGLCK G +
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVT--------------YNSLIDGLCKLGKI 388

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L  +M D+ V P+++TY+S++   C  +  ++A  L  ++ DQG++PN+ T+ ++
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK G++++A ++ + ++  G      TY  ++ GFC  G  + A  L   M+   C
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSC 508



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 23/226 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  I  Y +      P + S+NI++    K K  D  ++LFK ++   + PD+ T++ 
Sbjct: 319 NKAKSIL-YTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+  CK+G++S+   ++  +      PD++T++S++  +CK                  
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TY  +IDGLCK G ++ A  +F  +  K     V TYT +I GFC    ++EA 
Sbjct: 438 IRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAL 497

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            L  +M D    P+ VT+ +I+  L    + D+A  L + MI  G+
Sbjct: 498 ALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLRE-MITRGL 542



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K N + Y+S+   F   ND  +A  LF  ++ Q   P  + FN I+  L K+       S
Sbjct: 38  KINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLS 97

Query: 212 LLDLM-----------IQH-----GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   M            QH     G  P+  T+ TL+ G CL G+++ A     ++ +MG
Sbjct: 98  LSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMG 157


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 92/331 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  FN +L  +AK   +D V+SL +R+ +  +  DLY+++I
Sbjct: 62  DDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 77  LINCFCKMGRVSHGFVVLGRILR----------------SC------------------- 101
           LINCFC+  ++     VLG++++                 C                   
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD--- 137
           + P+ VTF +LI                     + C+PD  TY T+++GLCK+G +D   
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 138 --------------------------------KAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                                            A  LF +M +K ++PNVVTY S+IR  
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    W++A RL  +M+++ + PNVVTF+ ++D   K GK+ EA  L D MI+  + PD 
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 391



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 137/260 (52%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL +F  M       P V ++N ++ CL     +     L   +    + P++ T S 
Sbjct: 272 NDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   +++    PD+ T++SLI                     K 
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +TYNT+I G CK   V++  ELF +M  + +  N VTY ++I+G   A D + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M+  GV P+++T+++++D LCK GK+++A  + + + +  + PD +TYN +++G 
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+V    +LF S+   G
Sbjct: 511 CKAGKVEDGWDLFCSLSLKG 530



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 27/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSHG 90
           P V +F+ ++    K         L+  +    + PD++T+S LIN FC   ++    H 
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG 129
           F ++  I + CF P+VVT+ +LIK  CK                     + +TYNT+I G
Sbjct: 383 FELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L + G  D A+++F KM    V P+++TY+ ++ G C      +A  +F  +    ++P+
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+N++++ +CK GK+++   L   +   GV+P+   Y T++ GFC  G    A  LF 
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559

Query: 250 SMESMG 255
            M+  G
Sbjct: 560 EMKEDG 565



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T++ L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   + +     + VT+ +LI             K+ K       
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY+ ++DGLCK G ++KA  +F  ++   ++P++ TY  +I G C A    +   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNV+ +  ++   C+ G  +EA +L   M + G  P++ TYNTL+    
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 582 RDGDKAASAELIKEMRSCG 600



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L +    D    +FK++ S G+ PD+ T+SIL++  CK G++    VV   +
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +S   PD+ T              YN +I+G+CK G V+   +LF  +  K VKPNV+ 
Sbjct: 492 QKSKMEPDIYT--------------YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC      EA  LF EM + G  PN  T+N ++    ++G    ++ L+  M 
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMR 597

Query: 218 QHGVRPDAFT----YNTLLDG 234
             G   DA T     N L DG
Sbjct: 598 SCGFVGDASTISMVINMLHDG 618



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A +LF +M      P++V +  ++      N ++    L   M +  +  ++ ++N+
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +++  C+  ++  A ++L  M++ G  PD  T ++LL+G+C   R++ A  L   M
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 145/260 (55%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F  ++     P  V+  +I+LG LA+  + D    +FK++  +G  P+  T+SI
Sbjct: 204 DEAMKLFKDVIAKGYMPDTVTYNSILLG-LARKSNMDEAEEMFKKMVDSGCAPNGATYSI 262

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +++  C++G ++    +   +    F+PDV+   ++I  +CK                  
Sbjct: 263 VLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TYN ++DGLCK   VDKA ELF  M D    P++V+Y+ V+ G C  N  ++A+
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 382

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M+++ + P+VVTFN++MD LCK GK+DEA  LLD+M +H V PD  T  TL+ G 
Sbjct: 383 VLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGL 442

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   R + A  LF  M   G
Sbjct: 443 CRDKRTDEAVRLFQYMVEKG 462



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 59/298 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M+    S   V+ +N ++  L K+++ +    L + + S G  PD  T++ 
Sbjct: 62  DEADELFHKMIERGCSANTVA-YNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK------------ 117
           +++  C+MG+VS        +    ++PDVV +  L+       KV +            
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD ITYNT+IDG C+    D+A +LF  +  K   P+ VTY S++ G    ++ +E
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 174 AKRLFIEMMDQGVQPNVVTF-----------------------------------NVIMD 198
           A+ +F +M+D G  PN  T+                                   N ++D
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK  K+D+A  +L+ M + G  PD  TYN LLDG C T  V+ A ELF +M   GC
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 358



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 16/225 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI+L  L K    D    LF  +   G  PD+ ++S+++N  CK  +V    V+
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R++     PDVVTF              N ++DGLCK G +D+AK+L   M + NV P
Sbjct: 385 FDRMIERKLVPDVVTF--------------NILMDGLCKAGKLDEAKDLLDVMSEHNVLP 430

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VT T+++ G C     +EA RLF  M+++G   +V+  N+++  LC+ GK+ +A    
Sbjct: 431 DGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFF 490

Query: 214 DLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M++      PD  TY TL++     GRV+ A + F  M   GC
Sbjct: 491 KSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGC 535



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 23/217 (10%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------- 113
           +   G  PD+ T+S +I+  CK G+V+    ++  +      PDV T+T ++        
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 114 -------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        + C  + + YN +I+GLCK   +++A +L  +M  K  +P+ +TY +
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL--MIQ 218
           ++ G C     +EAK+ F  M  +G  P+VV +N ++D L K GK+ EA  L     M  
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             V PD  TYNTL+DGFC   + + A +LF  + + G
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKG 217



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M ++G +P+VVT++ I+  LCK GK+ EA  +++ M + GV PD  TY  ++D  C  G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 241 VNHAKELFVSMESMGC 256
           V+ A ELF  M   GC
Sbjct: 61  VDEADELFHKMIERGC 76


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 155/322 (48%), Gaps = 92/322 (28%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++  P  P +  FN +L  +AK K +D V+SL +++   G+  +LYT++ILINCFC+  
Sbjct: 1   MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59

Query: 86  RVSHGFVVLGRILR-----------------------------------SCFTPDVVTFT 110
           ++S    +LG++++                                     + PD +TFT
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 111 SLI---------------------KVCKPDAITY-------------------------- 123
           +LI                     + C+P+ +TY                          
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179

Query: 124 ---------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                    NTIID LCK   VD A  LF +M+ K ++PNVVTY+S+I   C    W++A
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L  +M+++ + PN+VTFN ++D   K GK  EA  L D MI+  + PD FTYN+L++G
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC+  R++ AK++F  M S  C
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDC 321



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           FN ++  L K +H D  L+LFK + + G+ P++ T+S LI+C C  GR S          
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 91  -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
                            FV  G+          +++    PD+ T+ SLI          
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD  TYNT+I G CK   V+   ELF +M  + +  + VTYT++I
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G  +  D + A+++F +M+  GV P+++T+++++D LC NGK+++A  + D M +  ++
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D + Y T+++G C  G+V+   +LF S+   G
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++     P + ++N ++     +   D    +F+ + S   FPDL T++ L
Sbjct: 273 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   +       D VT+T+LI             KV K       
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLC  G ++KA E+F  M+   +K ++  YT++I G C A   ++   
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNVVT+N ++  LC    + EA +LL  M + G  PD+ TYNTL+    
Sbjct: 452 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 511

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 512 RDGDKAASAELIREMRS 528



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + +++I+L  L  N   +  L +F  +  + +  D+Y ++ +I   CK G+V  G+ 
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451

Query: 93  VLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +               F SL +K  KP+ +TYNT+I GLC +  + +A  L  KMK+   
Sbjct: 452 L---------------FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY ++IR      D   +  L  EM       +  T  ++ + L  +G++D+  S
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDK--S 553

Query: 212 LLDLM 216
            LD++
Sbjct: 554 FLDML 558


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 92/331 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  FN +L  +AK   +D V+SL +R+ +  +  DLY+++I
Sbjct: 46  DDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 77  LINCFCKMGRVSHGFVVLGRILR----------------SC------------------- 101
           LINCFC+  ++     VLG++++                 C                   
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD--- 137
           + P+ VTF +LI                     + C+PD  TY T+++GLCK+G +D   
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 138 --------------------------------KAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                                            A  LF +M +K ++PNVVTY S+IR  
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    W++A RL  +M+++ + PNVVTF+ ++D   K GK+ EA  L D MI+  + PD 
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 375



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 137/260 (52%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL +F  M       P V ++N ++ CL     +     L   +    + P++ T S 
Sbjct: 256 NDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   +++    PD+ T++SLI                     K 
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +TYNT+I G CK   V++  ELF +M  + +  N VTY ++I+G   A D + A+
Sbjct: 375 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 434

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M+  GV P+++T+++++D LCK GK+++A  + + + +  + PD +TYN +++G 
Sbjct: 435 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 494

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+V    +LF S+   G
Sbjct: 495 CKAGKVEDGWDLFCSLSLKG 514



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 27/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSHG 90
           P V +F+ ++    K         L+  +    + PD++T+S LIN FC   ++    H 
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG 129
           F ++  I + CF P+VVT+ +LIK  CK                     + +TYNT+I G
Sbjct: 367 FELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 423

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L + G  D A+++F KM    V P+++TY+ ++ G C      +A  +F  +    ++P+
Sbjct: 424 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+N++++ +CK GK+++   L   +   GV+P+   Y T++ GFC  G    A  LF 
Sbjct: 484 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 543

Query: 250 SMESMG 255
            M+  G
Sbjct: 544 EMKEDG 549



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T++ L
Sbjct: 327 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   + +     + VT+ +LI             K+ K       
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY+ ++DGLCK G ++KA  +F  ++   ++P++ TY  +I G C A    +   
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNV+ +  ++   C+ G  +EA +L   M + G  P++ TYNTL+    
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 565

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 566 RDGDKAASAELIKEMRSCG 584



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L +    D    +FK++ S G+ PD+ T+SIL++  CK G++    VV   +
Sbjct: 416 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 475

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +S   PD+ T              YN +I+G+CK G V+   +LF  +  K VKPNV+ 
Sbjct: 476 QKSKMEPDIYT--------------YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 521

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC      EA  LF EM + G  PN  T+N ++    ++G    ++ L+  M 
Sbjct: 522 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMR 581

Query: 218 QHGVRPDAFT----YNTLLDG 234
             G   DA T     N L DG
Sbjct: 582 SCGFVGDASTISMVINMLHDG 602



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 60/116 (51%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A +LF +M      P++V +  ++      N ++    L   M +  +  ++ ++N+
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +++  C+  ++  A ++L  M++ G  PD  T ++LL+G+C   R++ A  L   M
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 166/356 (46%), Gaps = 101/356 (28%)

Query: 1   ERLKSSGEGDITTITPN---------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
           ER  +S  GD   I  N         +A+ +F  M++  P P  V  FN +L  +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFC----------------KMG---------- 85
           ++ V+SL +++ + G+  DLYT+SI INCFC                K+G          
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 86  ---------RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
                    R+S    ++ +++   + PD  TFT+LI                     + 
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 116 CKPDAITY-----------------------------------NTIIDGLCKQGFVDKAK 140
           C+PD +TY                                   NTIIDGLCK   +D A 
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M +K ++P+V TY+S+I   C    W++A RL  +M+++ + PNVVTF+ ++D  
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K GK+ EA  L D MI+  + PD FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394



 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           +N ++  L K KH D  L+LF  +++ G+ PD++T+S LI+C C  GR S          
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 91  -----------------FVVLGRI----------LRSCFTPDVVTFTSLI---------- 113
                            FV  G++          ++    PD+ T++SLI          
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C P+ +TY+T+I G CK   V++  ELF +M  + +  N VTYT++I
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            GF  A D + A+ +F +M+  GV PN++T+N+++D LCKNGK+ +A  + + + +  + 
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           PD +TYN +++G C  G+V    ELF ++   G
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T+S L
Sbjct: 346 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVC--------------- 116
           I  FCK  RV  G  +   + +     + VT+T+LI      + C               
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYN ++DGLCK G + KA  +F  ++   ++P++ TY  +I G C A    +   
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV PNV+ +N ++   C+ G  +EA SLL  M + G  P++ TYNTL+    
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 585 RDGDREASAELIKEMRSCG 603



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 18/186 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D    +FK++ S G+ P++ T++IL++  CK G+++   VV   + RS   PD+ T    
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT---- 505

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                     YN +I+G+CK G V+   ELF  +  K V PNV+ Y ++I GFC      
Sbjct: 506 ----------YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY---- 228
           EA  L  +M + G  PN  T+N ++    ++G  + ++ L+  M   G   DA T     
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVT 615

Query: 229 NTLLDG 234
           N L DG
Sbjct: 616 NMLHDG 621


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 148/295 (50%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ M+R+ P PPP S F+ +LG + +  HY T +SLF +L S G+ P + T +I
Sbjct: 37  DDAVTCFNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------VCKP----- 118
           LINC+      +  F +L  IL+S + P++VTF ++I               C+      
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------------------- 155
              D  TY T+I+GL K G +  A  L  +M+  +V+PN+                    
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 156 ---------------VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                          VTY S+I G C    W E  +L  +M+ + V P+  TFN+++D L
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G++ EA  +L +M + G +PD  TYN L++G+C    V+ A+ELF  M   G
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 22/233 (9%)

Query: 44  GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 103
           GC +  + +  V  L  ++    + PD YT +ILI+  CK GR+     VL  + +    
Sbjct: 239 GCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEK 297

Query: 104 PDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           PD+VT+ +L+                     +  +PD + YN +IDG CK   VD+A  L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F ++ +KN+ P + +Y S+I G C +   +  K+L  EM      P+VVT+N+++D LCK
Sbjct: 358 FKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G++ EA  +L +M++ GV+P+  TYN ++DG+CL   VN AK++F  M   G
Sbjct: 418 EGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 15/244 (6%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG  +    +EA  +F+ M++     P V ++N+++    K K  D  + LFK L +  L
Sbjct: 308 EGYCSRENVHEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P + +++ LI+  C  GR+SH   +L  +  S   PDVVT              YN +I
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT--------------YNILI 412

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D LCK+G + +A  + + M  K VKPN+VTY +++ G+C  N+ N AK +F  M+  G++
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+++ +NV+++  CK   +DEA  L   M    + PD  +YN+L+DG C  GR+ H +EL
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532

Query: 248 FVSM 251
              M
Sbjct: 533 LDEM 536



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+N ++  L  +     V  L   ++ +   PD+ T++ILI+  CK GR+     V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 94  LGRILRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCK 132
           L  +++    P++VT+ ++         + V K            PD + YN +I+G CK
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF +M+ KN+ P++ +Y S+I G C        + L  EM D G  P+V+T
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D  CK    D+A SL   +++ G+ PD +T + ++D  C   ++  A++    + 
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLL 606

Query: 253 SMGC 256
             GC
Sbjct: 607 MHGC 610



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 56/275 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++     N      L   + L + G   D +T+  LIN   K G++     +
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHL 182

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG--- 129
           L  + +S   P++V +++LI  +CK                     DA+TYN++IDG   
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCS 242

Query: 130 --------------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                           LCK+G + +A+ +   M  +  KP++VT
Sbjct: 243 VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C   + +EA+ LF  M+ +G++P+V+ +NV++D  CK   +DEA  L   + 
Sbjct: 303 YNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELC 362

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              + P   +YN+L+DG C +GR++H K+L   M 
Sbjct: 363 NKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 23/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +   M++     P + ++N M+       + +    +F R+  +GL PD+  +++L
Sbjct: 423 EALGVLVMMMK-KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVL 481

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVC---- 116
           IN +CK   V    V+   +      PD+ ++ SLI                 ++C    
Sbjct: 482 INGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYN ++D  CK    DKA  LF ++ +  + P+  T  +++   C       A+ 
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               ++  G  PNV T+ ++++ LCK+G   EA  LL  M  +   PDA T+  ++    
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 237 LTGRVNHAKELFVSMESMG 255
                + A++L   M + G
Sbjct: 661 QRNETDKAEKLREEMIARG 679



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 21/225 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  IF+ M++     P + ++N+++    K +  D  + LFK +    L PD+ +++ 
Sbjct: 457 NVAKDIFNRMVK-SGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+  C +GR+ H   +L  +  S  +PDV+T+  L+   CK                  
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGI 575

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T + I+D LCK   +  A++    +      PNV TYT +I   C    + EA  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           L  +M D    P+ +TF +I+  L +  + D+A  L + MI  G+
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+   VD A   F +M      P    +  ++        +  A  LF ++  +G+ P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF ++++          A SLL  +++ G +P+  T+NT+++GFC+ G +  A +   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 251 MESMG 255
           + + G
Sbjct: 151 LLAQG 155


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 151/295 (51%), Gaps = 65/295 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F  ML M  +PP +  FN +L   AK KHY TV+SL +RL    + PD +T +I
Sbjct: 45  DDALFQFHRMLCMRHTPP-IIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC +G+++  F VL +IL+  + PD VT T+LIK                      
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         VCK                    P+ + YNTIID LCK+  V +A 
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEAC 223

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +  NVVTY+++I GFC      EA     EM+ + + P+V  +N ++D L
Sbjct: 224 NLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDAL 283

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K GK+ EA ++L ++++  ++P+  TYNTL+DG+        AK +F ++  MG
Sbjct: 284 HKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHVFNAVGLMG 330



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 49/273 (17%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  +N ++ CL K K      +LF  ++  G+  ++ T+S +I+ FC +G+++   
Sbjct: 199 TEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEAL 258

Query: 92  VVLGRILRSCFTPDVVTFTSLI--------------------KVC-KPDAITYNTIIDG- 129
             L  ++     PDV  + +L+                    K C KP+ ITYNT+IDG 
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY 318

Query: 130 --------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
                                     LCK   V++A  L+ +M  KN+ PN VTY S+I 
Sbjct: 319 AKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           G C +   + A  L  EM D+G   NV+T+N +++ LCKNG++D+A +L++ M   G++P
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQP 438

Query: 224 DAFTYNTLLDG-FCLTGRVNHAKELFVSMESMG 255
           D +T N LL G  C   R+ +A+ LF  +   G
Sbjct: 439 DMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKG 471



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NIM+  L K K  +  L+L+K ++   + P+  T++ LI+  CK GR+S+ + +
Sbjct: 333 PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDL 392

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +       +V              ITYN++I+GLCK G +DKA  L  KMKD+ ++P
Sbjct: 393 IDEMHDRGHHANV--------------ITYNSLINGLCKNGQLDKAIALINKMKDQGIQP 438

Query: 154 NVVTYTSVIRGF-CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           ++ T   ++ G  C       A+ LF +++D+G  PNV T+N+I+   CK G +DEA +L
Sbjct: 439 DMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYAL 498

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M   G  P+A T+  ++      G  + A++L   M + G
Sbjct: 499 QSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARG 541



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A   F +M      P ++ +  ++  F     +     L   +  + +QP+  T N+
Sbjct: 44  VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C  G+++ A S+L  +++ G +PD  T  TL+ G CL G+V  A      + + G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 148/295 (50%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ M+R+ P PPP S F+ +LG + +  HY T +SLF +L S G+ P + T +I
Sbjct: 37  DDAVTCFNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------VCKP----- 118
           LINC+      +  F +L  IL+S + P++VTF ++I               C+      
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV-------------------- 155
              D  TY T+I+GL K G +  A  L  +M+  +V+PN+                    
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 156 ---------------VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                          VTY S+I G C    W E  +L  +M+ + V P+  TFN+++D L
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G++ EA  +L +M + G +PD  TYN L++G+C    V+ A+ELF  M   G
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 22/233 (9%)

Query: 44  GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 103
           GC +  + +  V  L  ++    + PD YT +ILI+  CK GR+     VL  + +    
Sbjct: 239 GCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEK 297

Query: 104 PDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           PD+VT+ +L+                     +  +PD + YN +IDG CK   VD+A  L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F ++ +KN+ P + +Y S+I G C +   +  K+L  EM      P+VVT+N+++D LCK
Sbjct: 358 FKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G++ EA  +L +M++ GV+P+  TYN ++DG+CL   VN AK++F  M   G
Sbjct: 418 EGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470



 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 15/244 (6%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG  +    +EA  +F+ M++     P V ++N+++    K K  D  + LFK L +  L
Sbjct: 308 EGYCSRENVHEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P + +++ LI+  C  GR+SH   +L  +  S   PDVVT              YN +I
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT--------------YNILI 412

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D LCK+G + +A  + + M  K VKPN+VTY +++ G+C  N+ N AK +F  M+  G++
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+++ +NV+++  CK   +DEA  L   M    + PD  +YN+L+DG C  GR+ H +EL
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532

Query: 248 FVSM 251
              M
Sbjct: 533 LDEM 536



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+N ++  L  +     V  L   ++ +   PD+ T++ILI+  CK GR+     V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 94  LGRILRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCK 132
           L  +++    P++VT+ ++         + V K            PD + YN +I+G CK
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF +M+ KN+ P++ +Y S+I G C        + L  EM D G  P+V+T
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVIT 547

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D  CK    D+A SL   +++ G+ PD +T + ++D  C   ++  A++    + 
Sbjct: 548 YNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLL 606

Query: 253 SMGC 256
             GC
Sbjct: 607 MHGC 610



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 56/276 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++     N      L   + L + G   D +T+  LIN   K G++     +
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHL 182

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG--- 129
           L  + +S   P++V +++LI  +CK                     DA+TYN++IDG   
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCS 242

Query: 130 --------------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                           LCK+G + +A+ +   M  +  KP++VT
Sbjct: 243 VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C   + +EA+ LF  M+ +G++P+V+ +NV++D  CK   +DEA  L   + 
Sbjct: 303 YNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELC 362

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              + P   +YN+L+DG C +GR++H K+L   M  
Sbjct: 363 NKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG 398



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 23/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +   M++     P + ++N M+       + +    +F R+  +GL PD+  +++L
Sbjct: 423 EALGVLVMMMK-KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVL 481

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVC---- 116
           IN +CK   V    V+   +      PD+ ++ SLI                 ++C    
Sbjct: 482 INGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYN ++D  CK    DKA  LF ++ +  + P+  T  +++   C       A+ 
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               ++  G  PNV T+ ++++ LCK+G   EA  LL  M  +   PDA T+  ++    
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 237 LTGRVNHAKELFVSMESMG 255
                + A++L   M + G
Sbjct: 661 QRNETDKAEKLREEMIARG 679



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 21/225 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  IF+ M++     P + ++N+++    K +  D  + LFK +    L PD+ +++ 
Sbjct: 457 NVAKDIFNRMVK-SGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+  C +GR+ H   +L  +  S  +PDV+T+  L+   CK                  
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGI 575

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T + I+D LCK   +  A++    +      PNV TYT +I   C    + EA  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           L  +M D    P+ +TF +I+  L +  + D+A  L + MI  G+
Sbjct: 636 LLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+   VD A   F +M      P    +  ++        +  A  LF ++  +G+ P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF ++++          A SLL  +++ G +P+  T+NT+++GFC+ G +  A +   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 251 MESMG 255
           + + G
Sbjct: 151 LLAQG 155


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 159/331 (48%), Gaps = 92/331 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  F+ +L  +AK   +D V+SL +++ + G+  +LYT+SI
Sbjct: 63  DDAVNLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 77  LINCFCKMGRVSHGFVVL-----------------------------------GRILRSC 101
           LINCFC+  ++S    VL                                   G+++   
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD--- 137
           + PD  TF +LI                     K C+PD +TY  +++GLCK+G +D   
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 138 --------------------------------KAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                                            A  LF +M +K ++PNVVTY S+IR  
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    W++A RL  +M+++ + PNVVTF+ ++D   K GK+ EA  L D MI+  + PD 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 362 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 392



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL +F  M       P V ++N ++ CL     +     L   +    + P++ T S 
Sbjct: 273 NDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   +++    PD+ T++SLI                     K 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +TYNT+I G CK   VD+  ELF +M  + +  N VTYT++I GF  A + + A+
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M+  GV P+++T+++++D LC NGK++ A  + + + +  + PD +TYN +++G 
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+V    +LF S+   G
Sbjct: 512 CKAGKVEDGWDLFCSLSLKG 531



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T++ L
Sbjct: 344 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVCK-------------- 117
           I  FCK  RV  G  +   + +     + VT+T+LI      + C               
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLC  G V+ A  +F  ++   ++P++ TY  +I G C A    +   
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNVVT+  +M   C+ G  +EA +L   M + G  PD+ TYNTL+    
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 583 RDGDKAASAELIREMRS 599



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF  M      P++V ++ ++      N ++    L  +M + G+  N+ T+++
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C+  ++  A ++L  M++ G  PD  T N+LL+GFC   R++ A  L   M  MG
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 147/282 (52%), Gaps = 57/282 (20%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  ML ++P+P  V  F  +L  L K KHY TV+SLF +L   G+ P++ + SILINC+C
Sbjct: 59  FHRMLLLNPAPS-VIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYC 117

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAI 121
            +G++   F +  +IL+  + P+ +T T+L+K  C                      + +
Sbjct: 118 HLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQV 177

Query: 122 TYNTIIDGLCKQG-----------------------------------FVDKAKELFLKM 146
           +Y T+I+GLCK G                                    V+ A EL+ +M
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEM 237

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             K + P VVT  S+I G+C    + EA  L  EM+ + + P+V TFN+++D LCK GK+
Sbjct: 238 ITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKI 297

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            EA S + +M++ GV PD  TY++L+DG+CL   VN AK ++
Sbjct: 298 KEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVY 339



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 44/282 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A  ++  M+    SP  V+  +++ G C+     +     L + +    + PD+YT +
Sbjct: 228 NDAYELYSEMITKRISPTVVTLNSLIYGYCIVG--QFKEAFGLLREMVLKNINPDVYTFN 285

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           IL++  CK G++      +  +++    PDVVT++SL+                      
Sbjct: 286 ILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVING 345

Query: 115 VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
            CK                    PD +TYN++IDGLCK G +  A EL  +M+D     +
Sbjct: 346 FCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPAD 405

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           ++TY S+I   C  +  ++A  L  ++ DQG+Q ++ T+N+++D LCK G++ +A  +  
Sbjct: 406 IITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQ 465

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            ++  G     +TY  +++G CL G +N A+ L   ME  GC
Sbjct: 466 DLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGC 507



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++    K K  D  LSLF  +    + PD  T++ LI+  CK GR+S+ + ++   +
Sbjct: 339 YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDE-M 397

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R    P              D ITYN++ID LCK   VDKA  L  K+KD+ ++ ++ TY
Sbjct: 398 RDSGQP-------------ADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTY 444

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             +I G C      +A+ +F +++ +G    V T+ ++++ LC  G ++EA +LL  M  
Sbjct: 445 NILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMED 504

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +G  PDA T  T++       +   A++L   M + G
Sbjct: 505 NGCVPDAVTCETIIRALFENDKNERAEKLLREMIARG 541



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 16/161 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    P  + ++N ++  L KN H D  ++L K++   G+  D+YT++ILI+  CK GR
Sbjct: 397 MRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGR 456

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +    V+   +              LIK       TY  +I+GLC +G +++A+ L  KM
Sbjct: 457 LKDAQVIFQDL--------------LIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKM 502

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNE-AKRLFIEMMDQGV 186
           +D    P+ VT  ++IR   + ND NE A++L  EM+ +G+
Sbjct: 503 EDNGCVPDAVTCETIIRAL-FENDKNERAEKLLREMIARGL 542



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 55/109 (50%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD     F +M   N  P+V+ +  ++        +     LF ++   G++PN+V+ ++
Sbjct: 52  VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSI 111

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++  C  G+M  A S+   +++ G  P+  T  TL+ GFCL  +V  A
Sbjct: 112 LINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEA 160


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 147/261 (56%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ +F Y +R     P V ++N ++  +  +  +     LFK +    + PD+ T SI
Sbjct: 261 NEAVDLF-YHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++  CK G V     V G++++    PD+VT++SLI  VCK                  
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +T++  +D  CK+G V +A+ +   M ++ ++PNVVTY S++ G+C  +  +EA+
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M+++G  P+V+++N+++   CK+ ++DEA  L D M   G+ P++ T+ TL+ G 
Sbjct: 440 KVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGL 499

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  GR   AKELF  M S GC
Sbjct: 500 CQAGRPYAAKELFKKMGSHGC 520



 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 149/293 (50%), Gaps = 57/293 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F+ M+ M+P P  ++ FN +L  L + KHYD+V+S+++++   G+   +YT +I
Sbjct: 86  DDALAYFNQMVHMNPFPC-ITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTI 144

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF---------------------------------- 102
           LINC C +  V  GF VLG+I +  F                                  
Sbjct: 145 LINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 103 -TPDVVTFTSLI----KV-----------------CKPDAITYNTIIDGLCKQGFVDKAK 140
             P V T T ++    K+                 C+P+ ++Y+ IID LCK   V++A 
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAV 264

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF  M+   + P VVTY S+I G C +  W +A  LF EM++  ++P+VVTF++++D L
Sbjct: 265 DLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDAL 324

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           CK G + EA S+   MIQ  + PD  TY++L+ G C +     +  L   M S
Sbjct: 325 CKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLS 377



 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 134/223 (60%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L KN+  +  + LF  + S G+ P + T++ LI   C  G+     ++
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     PDVVTF+ L+              D LCK+G V +A  +F KM    ++P
Sbjct: 302 FKEMLEWNMKPDVVTFSILV--------------DALCKEGVVLEALSVFGKMIQIAMEP 347

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VTY+S+I G C ++ W E+  L  EM+ + ++P+VVTF++ +D  CK G + EA S++
Sbjct: 348 DIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII 407

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +LMI+ G+RP+  TYN+L+DG+CL  +++ A+++F  M + GC
Sbjct: 408 NLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGC 450



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 136/255 (53%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F  M+++   P  V+  +++ G + K+  +    +L   + S  + PD+ T SI 
Sbjct: 332 EALSVFGKMIQIAMEPDIVTYSSLIHG-VCKSSLWKESSTLLNEMLSRNIRPDVVTFSIW 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++ FCK G VS    ++  ++     P+VVT+ SL+                     K C
Sbjct: 391 VDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGC 450

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ++YN +I G CK   +D+AK+LF +M  K + PN +T+T++I G C A     AK 
Sbjct: 451 APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKE 510

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M   G  P+++T++ ++   CK+G +DEA +L + + +  ++P+      LL G C
Sbjct: 511 LFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMC 570

Query: 237 LTGRVNHAKELFVSM 251
             G++  AKELF S+
Sbjct: 571 KAGKLEDAKELFSSL 585



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P V S+NI++    K++  D    LF  ++  GL P+  TH+ 
Sbjct: 436 DEARKVFDIMVN-KGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 77  LINCFCKMGR---VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           LI+  C+ GR       F  +G                    C PD ITY+T++ G CK 
Sbjct: 495 LISGLCQAGRPYAAKELFKKMGS-----------------HGCPPDLITYSTLLSGFCKH 537

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           G +D+A  LF  +K   +KPN V    ++ G C A    +AK LF  +  + +QP+V
Sbjct: 538 GHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P    +N ++  L +    D    ++ KM+   V  +V T T +I   C+ +       +
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             ++   G +P+++TFN +++ LC  G++ EA   LD ++  G +P  +T+  +++G C 
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCK 221

Query: 238 TGRVNHAKELFVSMESMGC 256
            G+ + A      M  + C
Sbjct: 222 IGKTSAAIVWMKKMVELDC 240



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 119 DAITYNTIIDGLCKQGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           DA   N  +   CK G     D A   F +M   N  P +  +  ++        ++   
Sbjct: 65  DASFDNFAVRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVV 124

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++ +M   GV  +V T  ++++ LC    +    S+L  + + G +P   T+NTL++G 
Sbjct: 125 SIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGL 184

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ GR+  A E    + S G
Sbjct: 185 CIEGRIVEAMEQLDYIMSRG 204


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 158/331 (47%), Gaps = 92/331 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  FN +L  +AK K +D V+SL +R+ +  +  DLY+++I
Sbjct: 62  DDAIGLFGEMVQSRPLPSIVE-FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 77  LINCFC----------------KMG-------------------RVSHGFVVLGRILRSC 101
           LINCFC                K+G                   R+S    ++ +++   
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITY----------------- 123
           + PD VTF +LI                     + C+PD +TY                 
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 124 ------------------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                             NTIIDGLCK   +D A  LF KM+ K ++P+V TY S+I   
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    W++A RL   M+++ + PNVVTF+ ++D   K GK+ EA  L D MI+  + PD 
Sbjct: 301 CNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           FTY++L++GFC+  R++ AK +F  M S  C
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 391



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           +N ++  L K KH D   +LF ++ + G+ PD++T++ LI+C C  GR S          
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 91  -----------------FVVLGRI----------LRSCFTPDVVTFTSLI---------- 113
                            FV  G++          ++    PD+ T++SLI          
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C P+ +TYNT+I G CK   V++  ELF +M  + +  N VTY ++I
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G   A D + A+++F +M+  GV P+++T+++++D LCK GK+++A  + + + +  + 
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           PD +TYN +++G C  G+V    +LF S+   G
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 27/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSHG 90
           P V +F+ ++    K         L+  +    + PD++T+S LIN FC   ++    H 
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG 129
           F ++  I + CF P+VVT+ +LIK  CK                     + +TYNT+I G
Sbjct: 383 FELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L + G  D A+++F KM    V P+++TY+ ++ G C      +A  +F  +    ++P+
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+N++++ +CK GK+++   L   +   GV+P+   Y T++ GFC  G    A  LF 
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559

Query: 250 SMESMG 255
            M+  G
Sbjct: 560 EMKEDG 565



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FP++ T++ L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   + +     + VT+ +LI             K+ K       
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY+ ++DGLCK G ++KA  +F  ++   ++P++ TY  +I G C A    +   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNV+ +  ++   C+ G  +EA +L   M + G  PD+  YNTL+    
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 581

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 582 RDGDKAASAELIKEMRSCG 600



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L +    D    +FK++ S G+ PD+ T+SIL++  CK G++    VV   +
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +S   PD+ T              YN +I+G+CK G V+   +LF  +  K VKPNV+ 
Sbjct: 492 QKSKMEPDIYT--------------YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC      EA  LF EM + G  P+   +N ++    ++G    ++ L+  M 
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMR 597

Query: 218 QHGVRPDAFT----YNTLLDG 234
             G   DA T     N L DG
Sbjct: 598 SCGFVGDASTISMVINMLHDG 618



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF +M      P++V +  ++        ++    L   M +  +  ++ ++N+
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++  C+  ++  A ++L  M++ G  PD  T ++LL+G+C + R++ A  L   M  MG
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 145/251 (57%), Gaps = 25/251 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ML++ P+PP +  FN +L  L K  HY T +SLF++L   G+ P + T +IL+NC+C  G
Sbjct: 1   MLQISPTPP-ILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTG 59

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYN 124
            ++  F +L +IL+  + P+ +TFT+LIK +C                    K D ++Y 
Sbjct: 60  GITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYA 119

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++GLCK G    A ++  K     V  +VV Y+++I   C      +A RL+ EM+ +
Sbjct: 120 ILMNGLCKMGETRAAMQMLRKTW---VNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAK 176

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PNV TF++++D LCK+ K  +A +LL +M++ GV+P+  TY  ++DG+CL  +VN A
Sbjct: 177 GIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKA 236

Query: 245 KELFVSMESMG 255
             +F  M   G
Sbjct: 237 LNIFNVMVQEG 247



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL IF+ M++     P V  +NI++  L K K  D  ++LFK ++   + PD+ T++I
Sbjct: 234 NKALNIFNVMVQ-EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK+G++S    ++  +     T D+              ITYN+++  LCK   +
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDI--------------ITYNSLLHALCKNHHL 338

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L  ++KD+ ++PNV TYT++I G C      +A  +F E++ +G    V T+NV+
Sbjct: 339 DQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVM 398

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ LCK G  DEA +LL  M  +   PDA +Y T++      G      +L  +M
Sbjct: 399 INGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAM 453



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+I++  L K++     ++L   +   G+ P++ T+  +++ +C + +V+    +
Sbjct: 180 PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +++    P+V  +  +I  +CK                    PD +TYN +IDGLCK
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  + EL  +M+      +++TY S++   C  +  ++A  L  E+ DQG+QPNV T
Sbjct: 300 LGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCT 359

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK+G++++A  +   ++  G     +TYN +++G C  G  + A  L   ME
Sbjct: 360 YTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRME 419

Query: 253 SMGC 256
              C
Sbjct: 420 DNAC 423


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 141/251 (56%), Gaps = 23/251 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +L   AK KHY TV SL  RL   G+ PDL+T +I
Sbjct: 41  DDAVSQFNRMLCMRHTPPIIQ-FNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNI 98

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LINCFC MG+++ GF VL +IL+  + P  VT  +LIK +C                   
Sbjct: 99  LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 158

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + + + Y T+I+G+CK G    A +L  K+  +  KP+VV Y+++I   C     +EA 
Sbjct: 159 FQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAY 218

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM  +G+  +VVT+N ++   C  GK+ EA  LL++M+   + PD +TY  L+D  
Sbjct: 219 GLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDAL 278

Query: 236 CLTGRVNHAKE 246
           C  G+V  AK 
Sbjct: 279 CKEGKVKEAKR 289



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 28/252 (11%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V  ++ ++  L K +       LF  +   G+  D+ T++ LI  FC +G++    
Sbjct: 194 TKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAI 253

Query: 92  VVLGRILRSCFTPDVVTFTSLI-KVCK---------------------------PDAITY 123
            +L  ++     PDV T+T L+  +CK                            D ITY
Sbjct: 254 GLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITY 313

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           +++IDGLCK G +D+A  LF KMKD+ ++PN+ T+T ++ G        +A+ +F +++ 
Sbjct: 314 SSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLT 373

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G   NV T+NV+++  CK G ++EA ++L  M  +G  P+AFT+ T++         + 
Sbjct: 374 KGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDK 433

Query: 244 AKELFVSMESMG 255
           A++L   M + G
Sbjct: 434 AEKLLRQMIARG 445



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 28/231 (12%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
             + L K+++     PD+  +S +I+  CK   VS  + +   +     + DVVT+ +LI
Sbjct: 181 AAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLI 240

Query: 114 ---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK-------ELFLK 145
                                K   PD  TY  ++D LCK+G V +AK       +L  +
Sbjct: 241 YGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDE 300

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+D+    +V+TY+S+I G C     + A  LF +M DQG++PN+ TF +++D L K G+
Sbjct: 301 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGR 360

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + +A  +   ++  G   + +TYN +++G C  G +  A  +   ME  GC
Sbjct: 361 LKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 411



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 14/160 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    P  V +++ ++  L KN H D  ++LF ++   G+ P+++T +IL++   K GR
Sbjct: 301 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGR 360

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     V   +L   +  +V               TYN +I+G CKQG +++A  +  KM
Sbjct: 361 LKDAQEVFQDLLTKGYHLNVY--------------TYNVMINGHCKQGLLEEALTMLSKM 406

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D    PN  T+ ++I      ++ ++A++L  +M+ +G+
Sbjct: 407 EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 446


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 164/347 (47%), Gaps = 95/347 (27%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L  +G   ++ +  ++A+ +F  M++  P P  +  F+ +L  +AK   +D V+SL +
Sbjct: 50  EKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGE 105

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL---------------------- 98
           ++ + G+  + YT+SIL+NCFC+  ++     VLG+++                      
Sbjct: 106 QMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 165

Query: 99  -------------RSCFTPDVVTFTSLI---------------------KVCKPDAITY- 123
                           + PD VTF +LI                     + C+PD  TY 
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 225

Query: 124 ----------------------------------NTIIDGLCKQGFVDKAKELFLKMKDK 149
                                             NTIIDGLCK   +D A +LF KM+ K
Sbjct: 226 TVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 285

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KP+V TY S+I   C    W++A RL  +M+++ + PNVVTFN ++D   K GK+ EA
Sbjct: 286 GIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEA 345

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L D MIQ  + P+  TYN+L++GFC+  R++ A+++F  M S  C
Sbjct: 346 EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 392



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 137/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           +N ++  L K KH D    LF ++ + G+ PD++T++ LI+C C  GR S          
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 91  -----------------FVVLGRILRS----------CFTPDVVTFTSLI---------- 113
                            F   G+++ +             P++VT+ SLI          
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD +TYNT+I G CK   V++  ELF +M  + +  N VTY ++I
Sbjct: 379 EAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 438

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G   A D + A+++F +M+  GV P+++T+++++D LCK GK+++A  + + + +  + 
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           P+ +TYN +++G C  G+V    +LF S+   G
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M++     P + ++N ++     +   D    +F  + S    PD+ T++ L
Sbjct: 344 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   + +     + VT+ +LI             K+ K       
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY+ ++DGLCK G ++KA  +F  ++   ++PN+ TY  +I G C A    +   
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNV+ +  ++   C+ G  +EA +L   M + G  PD+  YNTL+    
Sbjct: 523 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 582

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 583 RDGDKAASAELIKEMRSCG 601



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++   AK         LF  +    + P++ T++ LIN FC   R+     +
Sbjct: 324 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 383

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
              ++     PDVVT+ +LIK  CK                     + +TYNT+I GL +
Sbjct: 384 FTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A+++F KM    V P+++TY+ ++ G C      +A  +F  +    ++PN+ T
Sbjct: 444 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYT 503

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N++++ +CK GK+++   L   +   GV+P+   Y T++ GFC  G    A  LF  M+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 563

Query: 253 SMG 255
             G
Sbjct: 564 EDG 566



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L +    D    +FK++ S G+ PD+ T+SIL++  CK G++    VV   +
Sbjct: 433 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 492

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +S   P++ T              YN +I+G+CK G V+   +LF  +  K VKPNV+ 
Sbjct: 493 QKSKMEPNIYT--------------YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 538

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I GFC      EA  LF EM + G  P+   +N ++    ++G    ++ L+  M 
Sbjct: 539 YTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMR 598

Query: 218 QHGVRPDAFT----YNTLLDG 234
             G   DA T     N L DG
Sbjct: 599 SCGFVGDASTISMVINMLHDG 619


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 158/303 (52%), Gaps = 60/303 (19%)

Query: 12  TTITPNE---ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           TT   N+   A+ +F+ +L  +P+      FN +LG L K+KHY TVLSL +++   G+ 
Sbjct: 42  TTFHSNDVDGAVSLFNSLLHQNPTLTAFE-FNKILGSLVKSKHYHTVLSLSQQMEFEGIN 100

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------- 116
           P+  T +ILINCFC++G +   F VL +IL+  + PD++T  + IK  C           
Sbjct: 101 PNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNF 160

Query: 117 ---------KPDAITYNTIIDGLCKQG--------------------------------- 134
                      D ++Y T+I+GLCK G                                 
Sbjct: 161 HDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSK 220

Query: 135 --FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V+ A +L+ +M  K + P+VVTY+++IRGF       +A  LF +M+ + ++P+V T
Sbjct: 221 DKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYT 280

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++D  CK G++ +A ++LD+M+   ++P+  T+NTL+DGFC   ++   K +F  M 
Sbjct: 281 FNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMM 340

Query: 253 SMG 255
             G
Sbjct: 341 KQG 343



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP  V+   ++ G     K  D +  LF ++    + PD+YT +I
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAI-DLFNKMILENIKPDVYTFNI 283

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK GR+     VL  ++              I+  KP+  T+NT++DG CK   +
Sbjct: 284 LVDGFCKEGRLKKAKNVLDMMM--------------IQDIKPNVSTFNTLVDGFCKDRKM 329

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            + K +F  M  + +KPNVVTY S++ G+C     N+AK++F  M  +GV  NV ++N++
Sbjct: 330 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIM 389

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK  K+D+A  L   M    + PD  TYN+L+DG C +G++++A +L   M   G
Sbjct: 390 INGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRG 448



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 46/246 (18%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ M+ +    P V +FNI++    K        ++   +    + P++ T + L
Sbjct: 261 DAIDLFNKMI-LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTL 319

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCKPDAI--------- 121
           ++ FCK  ++  G  V   +++    P+VVT+ SL+       +V K   I         
Sbjct: 320 VDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGV 379

Query: 122 -----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
                +YN +I+G CK   VDKA +LF++M  K++ P+VVTY S+I G C +   + A +
Sbjct: 380 TANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQ 439

Query: 177 LFIEM-----------------------MDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           L  EM                        DQG+QPN+ T  +++  LC++GK++ A  + 
Sbjct: 440 LVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVF 499

Query: 214 -DLMIQ 218
            DL+++
Sbjct: 500 EDLLVK 505



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           ++ N + Y+S+   F ++ND + A  LF  ++ Q        FN I+  L K+       
Sbjct: 30  LQKNFIPYSSISTTF-HSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVL 88

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           SL   M   G+ P+  T+N L++ FC  G +  A  +   +  MG
Sbjct: 89  SLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMG 133


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 148/296 (50%), Gaps = 58/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+   P P  VS F+ +L  L   KHY +V+S+F+ ++   +  D +  S 
Sbjct: 54  DDAFSLFRQMVTTKPLPSAVS-FSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           ++N  C M R   GF VL    +     + VTFT+LI+                      
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 115 VCKPDAITYNTIIDGLCKQG-----------------------------------FVDKA 139
           +C+PD + Y T++DGLCK+G                                    +D A
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGA 232

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +MK KN+ P+++TYTS+I G    + W + + LF+EM+   + P+V TFN ++D 
Sbjct: 233 TSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDG 292

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK GK+++A  ++  MI+ GV P+  TYN ++DG+CL G++  A+ +F SM   G
Sbjct: 293 LCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKG 348



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 134/259 (51%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  ++R +   P    +  ++  L K  H      L + +      PD   ++I+
Sbjct: 160 DAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIV 219

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
           I+ FCK G +     +L  + +    PD++T+TSLI    K+ +                
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNI 279

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T+N++IDGLCK+G V+ A+E+   M +K V+PN +TY  V+ G+C       A+R
Sbjct: 280 YPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARR 339

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+D+G++P+++++  +++   +  KMD+A  L   + Q+G++P   T + LL G  
Sbjct: 340 IFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLF 399

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   AK  F  M++ G
Sbjct: 400 EVGRTECAKIFFDEMQAAG 418



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++  ++  L K   ++ V +LF  +    ++PD+ T + +I+  CK G+V     
Sbjct: 245 PPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDA-- 302

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                       +++T+  + K  +P+ ITYN ++DG C +G + +A+ +F  M DK ++
Sbjct: 303 -----------EEIMTYM-IEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIE 350

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P++++YT++I G+      ++A +LF E+   G++P++VT +V++  L + G+ + A   
Sbjct: 351 PDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIF 410

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            D M   G  P+ +T+ TLL G+   G V  A   F  +E
Sbjct: 411 FDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLE 450



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 15/224 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M+     P  +S   ++ G + K K  D  + LF+ ++  GL P + T S+L+   
Sbjct: 340 IFDSMIDKGIEPDIISYTALINGYVEKKK-MDKAMQLFREISQNGLKPSIVTCSVLLRGL 398

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            ++GR     +    +  +   P++ T              + T++ G  K G V++A  
Sbjct: 399 FEVGRTECAKIFFDEMQAAGHIPNLYT--------------HCTLLGGYFKNGLVEEAMS 444

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
            F K++ +    N+  YT+VI G C     ++A   F ++   G+ P+V+T+  ++   C
Sbjct: 445 HFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYC 504

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + G +DEA  +L  M  +G  PD  TYN ++ GF  + +V+  K
Sbjct: 505 QEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMK 548


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 152/298 (51%), Gaps = 59/298 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSL--FKRLNSTGLFPDLYTH 74
           ++A+ +F  M++  P  P +  FN +L  +AK K +D V+SL    ++   G  P + T 
Sbjct: 24  DDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------- 113
           S L+N +C   R+S    ++ +++   + PD +TFT+LI                     
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 114 KVCKPDAITY-----------------------------------NTIIDGLCKQGFVDK 138
           + C+P+ +TY                                   NTIID LCK   VD 
Sbjct: 143 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDD 202

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF +M+ K ++PNVVTY+S+I   C    W++A +L  +M+++ + PN+VTFN ++D
Sbjct: 203 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 262

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              K GK  EA  L D MI+  + PD FTYN+L++GFC+  R++ AK++F  M S  C
Sbjct: 263 AFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 320



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 56/273 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           FN ++  L K +H D  L+LFK + + G+ P++ T+S LI+C C  GR S          
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 91  -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
                            FV  G+          +++    PD+ T+ SLI          
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C PD  TYNT+I G CK   V+   ELF +M  + +  + VTYT++I
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G  +  D + A+++F +M+  GV P+++T+++++D LC NGK+++A  + D M +  ++
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 426

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D + Y T+++G C  G+V+   +LF S+   G
Sbjct: 427 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++     P + ++N ++     +   D    +F+ + S   FPDL T++ L
Sbjct: 272 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
           I  FCK  RV  G  +   +       D VT+T+LI             KV K       
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLC  G ++KA E+F  M+   +K ++  YT++I G C A   ++   
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 450

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+PNVVT+N ++  LC    + EA +LL  M + G  PD+ TYNTL+    
Sbjct: 451 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 510

Query: 237 LTGRVNHAKELFVSMES 253
             G    + EL   M S
Sbjct: 511 RDGDKAASAELIREMRS 527



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + +++I+L  L  N   +  L +F  +  + +  D+Y ++ +I   CK G+V  G+ 
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 450

Query: 93  VLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +               F SL +K  KP+ +TYNT+I GLC +  + +A  L  KMK+   
Sbjct: 451 L---------------FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY ++IR      D   +  L  EM       +  T  ++ + L  +G++D+  S
Sbjct: 496 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDK--S 552

Query: 212 LLDLM 216
            LD++
Sbjct: 553 FLDML 557



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI--EMMDQGVQPNVVTF 193
           +D A  LF  M      P++  +  ++        ++    L +  +MM  G +P++VT 
Sbjct: 23  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + +++  C   ++ +A +L+D M++ G RPD  T+ TL+ G  L  + + A  L   M  
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 254 MGC 256
            GC
Sbjct: 143 RGC 145


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 148/296 (50%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+++L M+   PP+  FN +L  L K  H+   +S  +++   G+ P+++T +I
Sbjct: 34  DDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNI 93

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCF  + +++  F ++ +IL+  + PD VT  +L++                      
Sbjct: 94  LINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKR 153

Query: 115 --------------VCK---------------------PDAITYNTIIDGLCKQGFVDKA 139
                         +CK                     PD I Y  IID  CK   V  A
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDA 213

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            +L+ +M  K + PNVVT+ S+I GFC      EA  L  EM    V PNV TFN+++D 
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDG 273

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK G++ +A+S+L +MI+ GV P+  TY +L+DG+ L   VN AK +F ++   G
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRG 329



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++            + L   ++   + P++YT +ILI+  CK G V     V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 94  LGRILRSCFTPDVVTFTSL---------------------IKVCKPDAITYNTIIDGLCK 132
           L  +++    P+VVT+TSL                     ++   P+  +Y+ +I+GLCK
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A +LF +M  KN+ PN VTY+S+I G C +   ++   L  E+ ++G   N++T
Sbjct: 347 NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIIT 406

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N +++ LCKN ++D+A +LL  M   G++PD  TY TL+DG C  GR+  A+ ++
Sbjct: 407 YNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIY 462



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+  + +    P V S+++M+  L KNK  D  + LFK ++   + P+  T+S 
Sbjct: 316 NKAKHVFN-TISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK GR+S  + ++  I       ++              ITYN++++GLCK   V
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANI--------------ITYNSLLNGLCKNHQV 420

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  KMKD+ ++P++ TYT+++ G C      +A+R++ +++ +G   N+  + V+
Sbjct: 421 DKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVM 480

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ LCK G  DEA SLL  M  +G  PDA TY TL+       +   A +L   M
Sbjct: 481 INGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K        S+   +   G+ P++ T++ L++ +  +  V+    V
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHV 321

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              I     TP+V +++ +I  +CK                    P+ +TY+++IDGLCK
Sbjct: 322 FNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    +L  ++ ++    N++TY S++ G C  +  ++A  L  +M D+G+QP++ T
Sbjct: 382 SGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMST 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCKNG++ +A  +   ++  G   +   Y  +++G C  G  + A  L   ME
Sbjct: 442 YTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQME 501

Query: 253 SMGC 256
             GC
Sbjct: 502 DNGC 505


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 56/295 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N  +  F+ +L      PP+  FN +L  L K KH+ T LSL +++   G+  D +T +I
Sbjct: 51  NNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNI 110

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCF ++G  S  F V G+IL+  F P+ +TF +LIK                      
Sbjct: 111 LINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQG 170

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+A+ YN IID +CK   V+ A 
Sbjct: 171 FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAF 230

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +L+ +M  K + P+  T  S+I GFC      EA  L  +M+ + + P + TF++++D  
Sbjct: 231 DLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAF 290

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK GK+ EA  +L + ++  +  D  TYN+L+DG+CL   +N AK++F SM S G
Sbjct: 291 CKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRG 345



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 50/267 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP   +  +++ G     +  + V  L  ++    + P +YT SI
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAV-GLLHKMILENINPRMYTFSI 285

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G+V    ++LG  ++     D++           D +TYN+++DG C    +
Sbjct: 286 LVDAFCKEGKVKEAKMMLGVTMKK----DIIL----------DVVTYNSLMDGYCLVKEI 331

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-------------- 182
           +KAK++F  M  + V  NV +YT++I G C     +EA  LF EM               
Sbjct: 332 NKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSL 391

Query: 183 ---------------------DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
                                D+G  PN++T+N I+D LCKN  +D+A +LL  +   G+
Sbjct: 392 IDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGI 451

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELF 248
           RPD +TY  L+ G C +G++  A+++F
Sbjct: 452 RPDMYTYTVLIKGLCQSGKLEDAQKVF 478



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IFD M         V S+  M+  L K K  D  ++LF+ +    + P++ T++ 
Sbjct: 332 NKAKDIFDSMAS-RGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNS 390

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   K+G++S    ++  +      P++              ITYN+I+D LCK   V
Sbjct: 391 LIDGLGKLGKISCVLKLVDEMHDRGQPPNI--------------ITYNSILDALCKNHHV 436

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L   +KD+ ++P++ TYT +I+G C +    +A+++F +++ +G   +V T+ V+
Sbjct: 437 DKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVM 496

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C  G  D A +LL  M  +G  P+A TY  ++         + A++L   M + G
Sbjct: 497 IQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARG 555


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  +L  L  +      L LF ++      PD+ T + L+N  C+ GRV     +
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++ +   PD +T+ + +  +CK                     P+ + Y+ IIDGLC
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    +  LF++M+DK + PN+VTY  +I GFC +  W+ A+RL  EM+++ + PNVV
Sbjct: 265 KDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA+ L D M+  G+ P+  TYN+++DGFC   R++ A+++F  M
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 252 ESMGC 256
            + GC
Sbjct: 385 ATKGC 389



 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 142/253 (56%), Gaps = 19/253 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  FN ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 63  EDAIDLFSDMLRSRP-LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           LI CFC   ++       G++ +    PDVVTFT+L+                 ++C+PD
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +T+ T+++GLC++G V +A  L  +M +  ++P+ +TY + + G C   D   A  L  
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 180 EMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +M +   ++PNVV ++ I+D LCK+G+  ++ +L   M   G+ P+  TYN ++ GFC++
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 239 GRVNHAKELFVSM 251
           GR + A+ L   M
Sbjct: 302 GRWSAAQRLLQEM 314



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 21/255 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FP++ T++ +I
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
             FC  GR S    +L  +L    +P+VVT+ +LI                         
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ITYN++IDG CKQ  +D A+++F  M  K   P+V T+T++I G+C A   ++   L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM  +G+  N VT+N ++   C  G ++ A  L   MI  GV PD  T NTLLDG C 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 238 TGRVNHAKELFVSME 252
            G++  A E+F +M+
Sbjct: 476 NGKLKDALEMFKAMQ 490



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N M+G    +  +     L + +    + P++ T++ LIN F K G+      +
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ +T+ S+I                     K C PD  T+ T+IDG C 
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D   EL  +M  + +  N VTY ++I GFC   D N A  L  +M+  GV P++VT
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 193 FNVIMDELCKNGKMDEA--------SSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRV 241
            N ++D LC NGK+ +A         S +DL   H   GV PD  TYN L+ G    G+ 
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 525

Query: 242 NHAKELFVSMESMG 255
             A+EL+  M   G
Sbjct: 526 LEAEELYEEMPHRG 539



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P V +F  ++      K  D  + L   +   GL  +  T++ LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +  +++ S   PD+VT  +L+  +C                           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD +TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 561

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F+ M  +   PNVVTFN +++  CK G++D+   L   M + G+  DA  Y TL+
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 622 YGFRKVGNINGALDIFQEMISSG 644



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 18/197 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 500 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTF              NT+I+G CK G VD   ELF +M
Sbjct: 560 LDEATQMFVSMGSKSFSPNVVTF--------------NTLINGYCKAGRVDDGLELFCEM 605

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  + + Y ++I GF    + N A  +F EM+  GV P+ +T   ++       ++
Sbjct: 606 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 665

Query: 207 DEASSLL-DLMIQHGVR 222
           + A ++L DL +  G +
Sbjct: 666 ERAVAMLEDLQMSVGYQ 682


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 154/312 (49%), Gaps = 70/312 (22%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL------SLFKRLN--- 63
           ++  ++AL +FD +L  H  P  V++FN +L  +++     + L      SLF R+    
Sbjct: 129 SLASHDALKLFDLLLP-HARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVREC 187

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF--------------------- 102
           S  + PD  T+SILI CFC+MGR+ HGF V G IL++ +                     
Sbjct: 188 SDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLD 247

Query: 103 ---------------TPDVVTFTSLIK------------------------VCKPDAITY 123
                          TP+VV++ +L+K                         C PD ++Y
Sbjct: 248 EATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSY 307

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT+I+G  ++G VDKA  LFL+M D+ + P+VVTY +VI G C A   + AK +F +M+D
Sbjct: 308 NTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLD 367

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +GV+P+  T+N ++      GK  E   LL+ M  H + PD F Y  LLD  C  GR   
Sbjct: 368 KGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTE 427

Query: 244 AKELFVSMESMG 255
           A+ +F S+   G
Sbjct: 428 ARNIFDSVIRKG 439



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 20/246 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F  ML     P    ++N ++        +  V+ L + +++  L PD + +++
Sbjct: 356 DRAKAVFQQMLDKGVKPSN-GTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCKPDAITYNTIIDG 129
           L++  CK GR +    +   ++R    PD +   ++        +   P+ + Y  +ID 
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDA 474

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G VD A   F +M ++            + G C    W +A+ L  EM+DQG++ +
Sbjct: 475 LCKLGRVDDAILKFNQMINE------------VYGLCTVEKWEKAEELVFEMLDQGIRLD 522

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           VV FN +M +LC+ G++ EA  L++LM++ GVRPD  +YNTL+DG CLTGR + A +L  
Sbjct: 523 VVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLD 582

Query: 250 SMESMG 255
            M S+G
Sbjct: 583 VMVSIG 588



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 24/243 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD ++R    P               +   D  + +F ++   GL P++  +  L
Sbjct: 427 EARNIFDSVIRKGIKP---------------DAMIDEAVCIFDKMRQQGLSPNVVNYGAL 471

Query: 78  INCFCKMGRVSHGFVVLGRILRSCF---------TPDVVTFTSLIKVCKPDAITYNTIID 128
           I+  CK+GRV    +   +++   +           + + F  L +  + D + +NT++ 
Sbjct: 472 IDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMC 531

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LC++G V +A+ L   M    V+P+V++Y +++ G C     +EA +L   M+  G++P
Sbjct: 532 DLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKP 591

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N  T+N ++   CK  ++D+A SLL  M+ +G  PD  TYNT+L G   TGR + AKEL+
Sbjct: 592 NEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELY 651

Query: 249 VSM 251
           ++M
Sbjct: 652 LNM 654



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 48/253 (18%)

Query: 39  FNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN +L  L   K  D   + L  R+   G  P++ +++ L+  FC   R      +L  +
Sbjct: 233 FNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVM 292

Query: 98  LR----SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
                 SC  PDVV++ ++I                     +   PD +TYNT+IDGLCK
Sbjct: 293 ADDQGLSC-PPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCK 351

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+AK +F +M DK VKP+  TY  +I G+     W E  RL  EM    ++P+   
Sbjct: 352 AQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFI 411

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF---------------------TYNTL 231
           + +++D LCKNG+  EA ++ D +I+ G++PDA                       Y  L
Sbjct: 412 YALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGAL 471

Query: 232 LDGFCLTGRVNHA 244
           +D  C  GRV+ A
Sbjct: 472 IDALCKLGRVDDA 484



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + MLR+   P  V S+N ++         D    L   + S GL P+ +T++ L
Sbjct: 541 EAQRLIELMLRVGVRPD-VISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTL 599

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +CK  R+   + +L  +L +  TPDVVT              YNTI+ GL + G   
Sbjct: 600 LHGYCKARRIDDAYSLLREMLMNGPTPDVVT--------------YNTILHGLFQTGRFS 645

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKEL+L M +   + ++ TY  ++ G C  N  +EA ++F  +  +G+Q +++TFN+++
Sbjct: 646 EAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMI 705

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K GK ++A  L   +  +G+ PD  TY  + +     G +     LF +ME  G
Sbjct: 706 GALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENG 763



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 22/246 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   T   +EA  + D M+ +   P   + +N +L    K +  D   SL + +   G 
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFT-YNTLLHGYCKARRIDDAYSLLREMLMNGP 624

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDA------ 120
            PD+ T++ +++   + GR S    +   ++ S    D+ T+  ++  +CK +       
Sbjct: 625 TPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFK 684

Query: 121 --------------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                         IT+N +I  L K G  + A +LF  +    + P+V TY  +     
Sbjct: 685 MFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLI 744

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 E   LF  M + G  PN    N ++      G +  A + L  + +     +A 
Sbjct: 745 KEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEAS 804

Query: 227 TYNTLL 232
           T + L+
Sbjct: 805 TASMLI 810


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  +L  L  +      L LF ++      PD+ T + L+N  C+ GRV     +
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++ +   PD +T+ + +  +CK                     P+ + Y+ IIDGLC
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    +  LF++M+DK + PN+VTY  +I GFC +  W+ A+RL  EM+++ + PNVV
Sbjct: 265 KDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA+ L D M+  G+ P+  TYN+++DGFC   R++ A+++F  M
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 252 ESMGC 256
            + GC
Sbjct: 385 ATKGC 389



 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 142/253 (56%), Gaps = 19/253 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  FN ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 63  EDAIDLFSDMLRSRP-LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           LI CFC   ++       G++ +    PDVVTFT+L+                 ++C+PD
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +T+ T+++GLC++G V +A  L  +M +  ++P+ +TY + + G C   D   A  L  
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241

Query: 180 EMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +M +   ++PNVV ++ I+D LCK+G+  ++ +L   M   G+ P+  TYN ++ GFC++
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCIS 301

Query: 239 GRVNHAKELFVSM 251
           GR + A+ L   M
Sbjct: 302 GRWSAAQRLLQEM 314



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 21/255 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FP++ T++ +I
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
             FC  GR S    +L  +L    +P+VVT+ +LI                         
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ITYN++IDG CKQ  +D A+++F  M  K   P+V T+T++I G+C A   ++   L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM  +G+  N VT+N ++   C  G ++ A  L   MI  GV PD  T NTLLDG C 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 238 TGRVNHAKELFVSME 252
            G++  A E+F +M+
Sbjct: 476 NGKLKDALEMFKAMQ 490



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N M+G    +  +     L + +    + P++ T++ LIN F K G+      +
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ +T+ S+I                     K C PD  T+ T+IDG C 
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D   EL  +M  + +  N VTY ++I GFC   D N A  L  +M+  GV P++VT
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 465

Query: 193 FNVIMDELCKNGKMDEA--------SSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRV 241
            N ++D LC NGK+ +A         S +DL   H   GV PD  TYN L+ G    G+ 
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 525

Query: 242 NHAKELFVSMESMG 255
             A+EL+  M   G
Sbjct: 526 LEAEELYEEMPHRG 539



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P V +F  ++      K  D  + L   +   GL  +  T++ LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +  +++ S   PD+VT  +L+  +C                           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD +TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 561

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F+ M  +   PNVVTFN +++  CK G++D+   L   M + G+  DA  Y TL+
Sbjct: 562 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 622 YGFRKVGNINGALDIFQEMISSG 644



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 500 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTF              NT+I+G CK G VD   ELF +M
Sbjct: 560 LDEATQMFVSMGSKSFSPNVVTF--------------NTLINGYCKAGRVDDGLELFCEM 605

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  + + Y ++I GF    + N A  +F EM+  GV P+ +T   ++       ++
Sbjct: 606 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 665

Query: 207 DEASSLLD 214
           + A ++L+
Sbjct: 666 ERAVAMLE 673


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 148/264 (56%), Gaps = 25/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGL--FPDLYT 73
           ++A  +F  M   +P P  V  FN +L  +AK + YD V++L+KR+ N+ G+   PDLYT
Sbjct: 67  DDAFHLFVLMAYSYPLPSIVE-FNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYT 125

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------------- 116
            +IL+NCFC+  + S     LG++++    PD+VT +SL+   C                
Sbjct: 126 CNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQME 185

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               K D +    +ID LCK   V  A E+  +MKD+ + PNVVTY+S+I G C +    
Sbjct: 186 KMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLA 245

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+R   EM  + + PNV+TF+ ++D   K GK+ +  S+  +MIQ  + P+ FTY++L+
Sbjct: 246 DAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLI 305

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C+  RV+ A ++   M S GC
Sbjct: 306 YGLCMHNRVDEAIKMLDLMISKGC 329



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL     M+++   P  V++ +++ G    N   D V  +  ++   G+  D+   +
Sbjct: 139 PSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVY-VAGQMEKMGIKRDVVVDT 197

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           ILI+  CK   V     VL R+     +P+VVT++SLI  +CK                 
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ IT++ +ID   K+G + K   ++  M   ++ PNV TY+S+I G C  N  +EA
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M+ +G  PNVVT++ + +   K+ ++D+   LLD M Q GV  +  + NTL+ G
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +   G+++ A  +F  M S G
Sbjct: 378 YFQAGKIDLALGVFGYMTSNG 398



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 21/233 (9%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           I++  L KN+     L + KR+   G+ P++ T+S LI   CK GR++     L  +   
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 101 CFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVDKA 139
              P+V+TF++LI       K+ K              P+  TY+++I GLC    VD+A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++   M  K   PNVVTY+++  GF  ++  ++  +L  +M  +GV  N V+ N ++  
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             + GK+D A  +   M  +G+ P+  +YN +L G    G V  A   F  M+
Sbjct: 378 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQ 430



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K+            ++S  + P++ T S LI+ + K G++S    V
Sbjct: 226 PNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSV 285

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +++    P+V T++SLI                     K C P+ +TY+T+ +G  K
Sbjct: 286 YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 345

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   +L   M  + V  N V+  ++I+G+  A   + A  +F  M   G+ PN+ +
Sbjct: 346 SSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRS 405

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  L  NG++++A S  + M +     D  TY  ++ G C    V  A +LF  ++
Sbjct: 406 YNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 465



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 22/219 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M++M   P   +  +++ G    N+  D  + +   + S G  P++ T+S L N F
Sbjct: 285 VYKMMIQMSIDPNVFTYSSLIYGLCMHNR-VDEAIKMLDLMISKGCTPNVVTYSTLANGF 343

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
            K  RV  G  +L  + +     + V+  +LIK                        P+ 
Sbjct: 344 FKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNI 403

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            +YN ++ GL   G V+KA   F  M+      +++TYT +I G C A    EA  LF +
Sbjct: 404 RSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYK 463

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +  + V+P+   + +++ EL + G   EA +L     +H
Sbjct: 464 LKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRFYQKH 502


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 71/309 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHYDTVLSLFKRLN---STG 66
           ++AL +FD +L  H  P  + +FN +L  +++           + V+SLF R+    +  
Sbjct: 31  DDALKLFDGLL-THARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF------------------------ 102
           + PDL T+SILI CFC+MGR+ HGF   G IL+S +                        
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 103 ------------TPDVVTFTSLIK------------------------VCKPDAITYNTI 126
                       TPDVV++ +L+K                         C P+ ++Y T+
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATV 209

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+G   +G VDKA  LFL+M D+ ++PNVVTYT+VI G C A   + A+ +F +M+D+GV
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +P+  T+N ++      GK  E   +L+ M  HG++PD +TY +LL+  C  GR   A+ 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARF 329

Query: 247 LFVSMESMG 255
            F SM   G
Sbjct: 330 FFDSMIRKG 338



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD M+R     P V+ + I++   A       +  L   +   GL PD +  +I+
Sbjct: 326 EARFFFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
              + K   +     +  ++ +   +PDVV F +LI              D LCK G VD
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALI--------------DALCKLGRVD 430

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M ++ V PN+  + S++ G C  + W +AK  + EM++QG++P+VV FN I+
Sbjct: 431 DAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTIL 490

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++ +A  L+DLM + G RPD  +Y TL+ G CL GR++ A +    M S+G
Sbjct: 491 CNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI+    AK    D  + +F ++   GL PD+     LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLK 435

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     P++  F SL+                     +  +PD + +NTI+  LC 
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V KA+ L   M+    +P+V++YT++I G C     +EA +    M+  G++P+  T
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWT 555

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C+ G++D+A  +   M+++G+ P   TY+T+L G   T R + AKEL+++M 
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615

Query: 253 SMG 255
           + G
Sbjct: 616 TSG 618



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 26/223 (11%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL----RSCFTPDVVTFTSLI 113
           L KR+   G  PD+ +++ L+  FC   R      +L  +     RSC  P+VV++ ++I
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSC-PPNVVSYATVI 210

Query: 114 ---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                                +  +P+ +TY T+IDGLCK   VD+A+ +F +M DK VK
Sbjct: 211 NGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  TY  +I G+     W E  R+  EM   G++P+  T+  +++ LC NG+  EA   
Sbjct: 271 PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFF 330

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D MI+ G++P+   Y  L+ G+   G ++   +L   M   G
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  FN +L  L           L   +   G  PD+ +++ LI   C          +
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHC----------L 530

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +GRI  +  + DV+    L    KPD  TYNT++ G C+ G +D A  +F +M    + P
Sbjct: 531 VGRIDEAAKSLDVMLSVGL----KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITP 586

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY++++ G      ++EAK L++ M+  G Q N+  +N+I++ L KN  +DEA  L 
Sbjct: 587 GVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF 646

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +     + +  T+N ++     +GR   A  LF ++ S G
Sbjct: 647 QSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYG 688



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 56/279 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+  ++         D   +LF  +   G+ P++ T++ +I+  CK   V     
Sbjct: 200 PPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEG 259

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           V  +++     PD  T+  LI                        KPD  TY ++++ LC
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC 319

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF-------------------------- 165
             G   +A+  F  M  K +KPNV  Y  +I G+                          
Sbjct: 320 NNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 166 -------CYANDW--NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                   YA     +EA  +F +M  QG+ P+VV F  ++D LCK G++D+A    + M
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  GV P+ F +N+L+ G C   +   AKE +  M + G
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  + D M R+  + P V S+  ++G        D        + S GL PD +T++ L
Sbjct: 501 KAQRLIDLMERV-GTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C+ GR+   + V   +LR+  TP VVT              Y+TI+ GL       
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVVT--------------YSTILHGLFTTRRFS 605

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKEL+L M     + N+  Y  ++ G    N  +EA +LF  +  +  Q  + TFN+++
Sbjct: 606 EAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMI 665

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K+G+ ++A  L   +  +G+ PD FTY  + +     G +    +LF +ME  G
Sbjct: 666 GALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P++ T+++++   C+ G+++   +   L+++ G R +    N LL G C   R+  A 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 246 ELFVS-MESMGC 256
           ++ +  M  +GC
Sbjct: 150 DILIKRMPELGC 161


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 150/295 (50%), Gaps = 56/295 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+++L M     P+  FN +L  L K  H+ T +S  K++    + PDL+T +I
Sbjct: 45  DDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNI 104

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LINCFC +G ++  F VL +I +  F PD VT T+LIK                      
Sbjct: 105 LINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKG 164

Query: 115 --------------VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
                         +CK                    P+ + YNTIID LCK   V  A 
Sbjct: 165 FHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHAS 224

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +L  +M  K + P+VVTYT++I G        EA  LF +M+ + ++P+V TFN+++D L
Sbjct: 225 DLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGL 284

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+M +A ++L +MI+ GV  +  TYN+L+DG+ L  + N A  +F +M   G
Sbjct: 285 CKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRG 339



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ M R   +P  V S++IM+  L K K  D  ++LFK ++S  + P+  T++ 
Sbjct: 326 NKATFVFNTMARRGVTPD-VQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNS 384

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   K GR+S  + ++  +       DV+T++SL+              D LCK   V
Sbjct: 385 LIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL--------------DALCKNHQV 430

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  K+KD+ ++PN+ TYT ++ G C      +A+ ++ +++ +G   +V  +NV+
Sbjct: 431 DKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVM 490

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK G  DEA SL+  M  +G  PDA TY TL+       + + A +L   M   G
Sbjct: 491 VNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++  L K       L + ++++   + P++  ++ +I+  CK   V H   +   +
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 98  LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFV 136
           +     PDVVT+T+LI  C                     KPD  T+N ++DGLCK+G +
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA+ +   M  + V  N+VTY S++ G+      N+A  +F  M  +GV P+V +++++
Sbjct: 291 KKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIM 350

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK   +DEA +L   M    + P+  TYN+L+DG    GR++ A +L   M + G
Sbjct: 351 INGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRG 409



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 134/260 (51%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F+ ML +    P V +FNI++  L K        ++   +   G+  ++ T++ L
Sbjct: 257 EAVGLFNQML-LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSL 315

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +  + + +    V   + R   TPDV +++ +I  +CK                   
Sbjct: 316 MDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYN++IDGL K G +  A +L  +M ++    +V+TY+S++   C  +  ++A  
Sbjct: 376 APNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAIT 435

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ DQG+QPN+ T+ +++D LCKNG++ +A ++   ++  G   D   YN +++G C
Sbjct: 436 LITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLC 495

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A  L   ME  GC
Sbjct: 496 KEGLFDEALSLVSKMEDNGC 515


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGL--FPDLYTHSILINCFCKMGRVSHG 90
           P +  FN +L  +AK + YD V++L+KR+ N+ G+   PDLYT +IL+NCFC+  + S  
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDG 129
              LG++++    PD+VT +SL+   C                    K D +    +ID 
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK   V  A E+  +MKD+ + PNVVTY+S+I G C +    +A+R   EM  + + PN
Sbjct: 128 LCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 187

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           V+TF+ ++D   K GK+ +  S+  +MIQ  + P+ FTY++L+ G C+  RV+ A ++  
Sbjct: 188 VITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLD 247

Query: 250 SMESMGC 256
            M S GC
Sbjct: 248 LMISKGC 254



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL     M+++   P  V++ +++ G    N   D V  +  ++   G+  D+   +
Sbjct: 64  PSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVY-VAGQMEKMGIKRDVVVDT 122

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           ILI+  CK   V     VL R+     +P+VVT++SLI  +CK                 
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ IT++ +ID   K+G + K   ++  M   ++ PNV TY+S+I G C  N  +EA
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M+ +G  PNVVT++ + +   K+ ++D+   LLD M Q GV  +  + NTL+ G
Sbjct: 243 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 302

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +   G+++ A  +F  M S G
Sbjct: 303 YFQAGKIDLALGVFGYMTSNG 323



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 21/233 (9%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           I++  L KN+     L + KR+   G+ P++ T+S LI   CK GR++     L  +   
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 101 CFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVDKA 139
              P+V+TF++LI       K+ K              P+  TY+++I GLC    VD+A
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++   M  K   PNVVTY+++  GF  ++  ++  +L  +M  +GV  N V+ N ++  
Sbjct: 243 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 302

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             + GK+D A  +   M  +G+ P+  +YN +L G    G V  A   F  M+
Sbjct: 303 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQ 355



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K+            ++S  + P++ T S LI+ + K G++S    V
Sbjct: 151 PNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSV 210

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +++    P+V T++SLI                     K C P+ +TY+T+ +G  K
Sbjct: 211 YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 270

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   +L   M  + V  N V+  ++I+G+  A   + A  +F  M   G+ PN+ +
Sbjct: 271 SSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRS 330

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  L  NG++++A S  + M +     D  TY  ++ G C    V  A +LF  ++
Sbjct: 331 YNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 390



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 22/219 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M++M   P   +  +++ G    N+  D  + +   + S G  P++ T+S L N F
Sbjct: 210 VYKMMIQMSIDPNVFTYSSLIYGLCMHNR-VDEAIKMLDLMISKGCTPNVVTYSTLANGF 268

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
            K  RV  G  +L  + +     + V+  +LIK                        P+ 
Sbjct: 269 FKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNI 328

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            +YN ++ GL   G V+KA   F  M+      +++TYT +I G C A    EA  LF +
Sbjct: 329 RSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYK 388

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +  + V+P+   + +++ EL + G   EA +L     +H
Sbjct: 389 LKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRFYQKH 427


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 154/313 (49%), Gaps = 71/313 (22%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY------DTVLSLFKRLNS-- 64
           +++ ++AL +FD  L  H  P  + +FN +L  ++           + V+S F R+    
Sbjct: 28  SLSVDDALKLFDEFLH-HARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDC 86

Query: 65  -TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF--------------------- 102
            + + PD++T+SIL+ CFC+MGR+ HGF   G IL++ +                     
Sbjct: 87  CSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRV 146

Query: 103 ----------------TPDVVTFTSLIK------------------------VCKPDAIT 122
                           TP+VV++ +L+K                         C P+ ++
Sbjct: 147 GEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVS 206

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YNT+I+G   +G VDKA  LFL M D+ + PNVVTYT VI G C A   + A+ +F +M+
Sbjct: 207 YNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI 266

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           D+GV+PN+VT+  ++      G+  E   +L  M  HG+ PD FTY  LLD  C  G+  
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCT 326

Query: 243 HAKELFVSMESMG 255
            A++LF SM   G
Sbjct: 327 EARKLFDSMIRKG 339



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+R     P VS + I+L   A       + S    +   G+ P+ Y  +I+
Sbjct: 327 EARKLFDSMIR-KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIV 385

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
              F K   +     +  ++ +   +P+VV               Y T+ID LCK G VD
Sbjct: 386 FCAFAKKAMIGEAMDIFNKMRQQGLSPNVVN--------------YATLIDALCKLGRVD 431

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+  F +M ++ V PN+V +TS++ G C  + W +A  LF EM++QG+ PNVV FN IM
Sbjct: 432 DAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIM 491

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++ +A  L+DLM + G RPD  +YN L+ G CL G+ + A +L   M S+G
Sbjct: 492 CNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG 549



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI+    AK       + +F ++   GL P++  ++ LI+  CK+GRV    +   +++
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
                P++V FTSL+                     +   P+ + +NTI+  LC +G V 
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+ L   M+    +P++++Y ++IRG C     +EA +L   M+  G++PN  T+N ++
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLL 561

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              C++G++D+A S+   M+ +G+ P   TYNT+L G   T R + AKEL+++M + G
Sbjct: 562 HGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 26/211 (12%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI----LRSCFTPDVVTFTSLI 113
           L +R++  G  P++ +++ L+  FC   R      +L  +    +RSC  P++V++ ++I
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSC-PPNLVSYNTVI 211

Query: 114 ---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                                +   P+ +TY  +IDGLCK   VD+A+ +F +M DK V+
Sbjct: 212 NGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVR 271

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+VTYT +I G+     W E  R+  EM   G++P+  T+ +++D LCK GK  EA  L
Sbjct: 272 PNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKL 331

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            D MI+ G++PD   Y  +L G+   G ++ 
Sbjct: 332 FDSMIRKGIKPDVSIYGIILHGYATKGALSE 362



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 23/263 (8%)

Query: 16  PNEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
             EAL +   M   ++   PP + S+N ++         D   +LF  +   G+ P++ T
Sbjct: 182 AEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVT 241

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           ++I+I+  CK   V     V  +++     P++VT+T LI                    
Sbjct: 242 YTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMS 301

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TY  ++D LCK+G   +A++LF  M  K +KP+V  Y  ++ G+      +
Sbjct: 302 AHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALS 361

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           E       M+  G+ PN   FN++     K   + EA  + + M Q G+ P+   Y TL+
Sbjct: 362 EMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLI 421

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           D  C  GRV+ A+  F  M + G
Sbjct: 422 DALCKLGRVDDAELKFNQMINEG 444



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ M+    +P  V   +++ G    +K ++    LF  + + G+ P++   + ++   C
Sbjct: 437 FNQMINEGVAPNIVVFTSLVYGLCTIDK-WEKAGELFFEMVNQGIHPNVVFFNTIMCNLC 495

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAI 121
             GRV     ++  + R    PD++++ +LI+                       KP+  
Sbjct: 496 TEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNEC 555

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYNT++ G C+ G +D A  +F +M    + P VVTY +++ G      ++EAK L++ M
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNM 615

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +  G Q ++ T+N+I++ L KN  +DEA  +   +    ++ D  T+N ++      GR 
Sbjct: 616 ITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 242 NHAKELFVSMESMG 255
             A  LF ++ + G
Sbjct: 676 EDAMNLFATISANG 689



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 17/236 (7%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           + D M R+   P  +S   ++ G CL      D    L   + S GL P+  T++ L++ 
Sbjct: 506 LIDLMERVGTRPDIISYNALIRGHCLVGKT--DEASKLLDIMLSVGLKPNECTYNTLLHG 563

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           +C+ GR+   + V   +L +  TP VVT              YNTI+ GL K     +AK
Sbjct: 564 YCRDGRIDDAYSVFQEMLSNGITPVVVT--------------YNTILHGLFKTRRFSEAK 609

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL+L M     + ++ TY  ++ G    N  +EA ++F  +  + +Q +++TFN+++  L
Sbjct: 610 ELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGAL 669

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K+G+ ++A +L   +  +G+ PD  TY  + +     G +     +F  ME  GC
Sbjct: 670 LKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGC 725



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 17/220 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  ML  +   P V ++N +L  L K + +     L+  + ++G    +YT++I
Sbjct: 571 DDAYSVFQEMLS-NGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNI 629

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGF 135
           ++N   K                +C    +  F SL  K  + D IT+N +I  L K G 
Sbjct: 630 ILNGLSK---------------NNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGR 674

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            + A  LF  +    + P+V TY  +           E   +F EM   G  PN +  N 
Sbjct: 675 KEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNF 734

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++  L   G +  A + L  + +     +A T + L+  F
Sbjct: 735 LVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLF 774


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+     M R     P V +++ ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 287 PKEAIGTLKKM-RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------------- 115
            L+  +   G +     +L  ++R+   PD   F  LI       KV             
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ + Y T+ID LCK G VD A   F +M D+ + PN++ YTS+I G C  + W++A
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L +EM+D+G+  N + FN I+D  CK G++ E+  L DLM++ GV+PD  TYNTL+DG
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            CL G+++ A +L  SM S+G
Sbjct: 526 CCLAGKMDEATKLLASMVSVG 546



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   + D M+R +   P    FNI++   AK +  D  + +F ++   GL P++  +  +
Sbjct: 359 EMHALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPD----------------- 119
           I+  CK G V    +   +++    TP+++ +TSLI  +C  D                 
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 120 ---AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
               I +N+IID  CK+G V ++++LF  M    VKP+++TY ++I G C A   +EA +
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+  GV+P++VT+  +++  C+  +MD+A +L   M+  GV P+  TYN +L G  
Sbjct: 538 LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 597

Query: 237 LTGRVNHAKELFVSMESMG 255
            T R   AKEL+VS+   G
Sbjct: 598 HTRRTAAAKELYVSITKSG 616



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 27/274 (9%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            D+   +P  A+  ++ M R       P V ++ I++GC  +    D   +    +   G
Sbjct: 63  ADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKG 122

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
              D  T + L+   C   R S    +VL R+      PDV ++ +L+K +C        
Sbjct: 123 FRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEA 182

Query: 118 ----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                           PD ++YNT+++G  K+G  DKA   + +M D+ + P+VVTY+S+
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSI 242

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I   C A   ++A  +   M+  GV P+ +T+N I+   C +G+  EA   L  M   GV
Sbjct: 243 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 302

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+  TY++L++  C  GR   A+++F SM   G
Sbjct: 303 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 16/241 (6%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+N +L    K    D   S +  +   G+ PD+ T+
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +I   CK   +     VL  ++++   PD               +TYN+I+ G C  G
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPD--------------CMTYNSILHGYCSSG 285

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +A     KM+   V+PNVVTY+S++   C      EA+++F  M  +G++P++ T+ 
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + E  +LLDLM+++G++PD   +N L+  +    +V+ A  +F  M   
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 255 G 255
           G
Sbjct: 406 G 406



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+   G  PD+++++ L+   C   R      +L  +   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++ +++                     +   PD +TY++II  LCK   +
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+PNVVT++ +
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 312

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M+ LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M R H   P V  +  ++  L K+   D  +  F+++   GL P++  ++ 
Sbjct: 393 DQAMLVFSKM-RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  C   +      ++  +L      + + F S+I                       
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD ITYNT+IDG C  G +D+A +L   M    VKP++VTY ++I G+C  +  ++A 
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  GV PN++T+N+I+  L    +   A  L   + + G + +  TYN +L G 
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 236 CLTGRVNHAKELFVSM 251
           C     + A  +F ++
Sbjct: 632 CKNNLTDEALRMFQNL 647



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E+  +FD M+R+   P  ++   ++ GC    K  D    L   + S G+ PD+ T+  L
Sbjct: 499 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN +C++ R+     +   ++ S  +P++              ITYN I+ GL       
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNI--------------ITYNIILQGLFHTRRTA 603

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKEL++ +     +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN+++
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L K G+MDEA  L      +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGC 722


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 19/257 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M       P V ++N ++    + +  D      +++ + G  PD+ T++ 
Sbjct: 126 DEAVALVETMAE-RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCKP 118
           LI  FCK   V  G  +LG + R  FTPD+VT++++I                    C P
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP 244

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
            AITYN++I G C+ G +D+A  L  KM D    P+VVTYT+++  FC     ++A  LF
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M+   + P+VVTF  ++D LC  G+M++A  LL+ + + G  P  +TYN ++DG+C  
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 239 GRVNHAKELFVSMESMG 255
            +V  A+EL     S G
Sbjct: 365 NQVRKAEELVADFRSRG 381



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 131/242 (54%), Gaps = 28/242 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV--SHGFVVLG 95
           +++ ++  L K +  D  ++L + +   G  P + T++ +I  FC+  RV  +HGF  + 
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGF--ME 168

Query: 96  RILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQG 134
           +++     PD++T+T+LI   CK                    PD +TY+T+IDGLCK G
Sbjct: 169 QMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAG 228

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A ++F +M   +  P  +TY S+I G+C A D +EA RL  +M+D    P+VVT+ 
Sbjct: 229 RLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYT 285

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +M   CK G++D+A  L   M+ + + PD  T+ +L+DG C  GR+  A EL   +   
Sbjct: 286 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 345

Query: 255 GC 256
           GC
Sbjct: 346 GC 347



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 27/262 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ IF+ M       P   ++N ++G   +    D  + L  ++      PD+ T++ 
Sbjct: 231 RDAVDIFEEM----SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTT 286

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ FCKMGR+   + +  +++ +  +PDVVTFTSL+                     + 
Sbjct: 287 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG 346

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P   TYN ++DG CK   V KA+EL    + +   PN VTY  ++ G C A   ++A 
Sbjct: 347 CPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQAL 406

Query: 176 RLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +   ++  +G     +V  + +I+D LC++G+ D+A    + MIQ G  P A T+ T++ 
Sbjct: 407 QYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVF 466

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
             C   +   A EL   M   G
Sbjct: 467 ALCKAHQPQQAHELLEEMIKYG 488



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 25/238 (10%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N+++G L +       L +++++N     PD  T++ L++   K  R+     VL  ++ 
Sbjct: 9   NVVIGGLCRAGRLRHALGVYRQMNDAHP-PDFLTYTKLVHGLSKARRLRDAVQVLQEMVS 67

Query: 100 SCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCKQGFVDK 138
           +   PD  T T +++ +C  D                    AITY+ ++DGLCK   +D+
Sbjct: 68  ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDE 127

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L   M ++   P VVTY S+I GFC A   +EA     +M+ +G  P+++T+  ++ 
Sbjct: 128 AVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIG 187

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             CK+  +     LL  + + G  PD  TY+T++DG C  GR+  A ++F   E M C
Sbjct: 188 GFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF---EEMSC 242



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 55/286 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL ++  M   HP  P   ++  ++  L+K +     + + + + S    PD  T ++++
Sbjct: 24  ALGVYRQMNDAHP--PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVV 81

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
              C   RV     ++  +L      + +T+++L+                     + C 
Sbjct: 82  QSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCA 141

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  +TYN+II G C+   VD+A     +M  +   P+++TYT++I GFC + D      L
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLEL 201

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGK-------------------------------- 205
             E+  +G  P++VT++ ++D LCK G+                                
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGD 261

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           MDEA  LL  M+     PD  TY TL+  FC  GR++ A ELF  M
Sbjct: 262 MDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQM 307



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 22/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------------IKV 115
           P    H+++I   C+ GR+ H   V  R +     PD +T+T L             ++V
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVY-RQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 116 CK--------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            +        PD  T   ++  LC    VD A+EL  +M  + +  N +TY++++ G C 
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               +EA  L   M ++G  P VVT+N I+   C+  ++DEA   ++ M+  G  PD  T
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y  L+ GFC +  V    EL   +   G
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRG 209



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 36/174 (20%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG------------- 164
           P  + +N +I GLC+ G +  A  ++ +M D +  P+ +TYT ++ G             
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 165 ----------------------FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                                  C  +  ++A+ L  EM+ +G+  N +T++ ++D LCK
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             ++DEA +L++ M + G  P   TYN+++ GFC   RV+ A      M + GC
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+    SP  V+  +++ G   + +  D  L L + +   G  P +YT++ 
Sbjct: 298 DDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED-ALELLEEITRRGCPPTIYTYNC 356

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------------- 117
           +++ +CK  +V     ++       F P+ VT+  L+  C                    
Sbjct: 357 VVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 416

Query: 118 ---PDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              P ++  Y  I+D LC+ G  D A + + +M  +   P   T+ +V+   C A+   +
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 476

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASSLLDL 215
           A  L  EM+  G  P   T + ++   C+ G   K DE +S L L
Sbjct: 477 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 140/298 (46%), Gaps = 58/298 (19%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +   AL  F  M+ M+P P     F  + G + K KHY T +SL K + S G+ PD+YT 
Sbjct: 51  SEEAALSFFHKMVVMNPLPRE-KDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTL 109

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
           +I+INC C +     GF VLG + +    P VVTF +LI                     
Sbjct: 110 TIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED 169

Query: 115 ----------------VCKP----DAITY-----------------NTIIDGLCKQGFVD 137
                           +CK      AI Y                 +TI+D LCK G V 
Sbjct: 170 MGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVC 229

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF  M  K ++P++V Y S+I G C    W EA  L   MM +G+ PNV TFNV++
Sbjct: 230 EALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLV 289

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK+G +  A +++  M+  GV PD  TYN+++ G CL  ++  A ++F  M   G
Sbjct: 290 DNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKG 347



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 14/217 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +++ ++  L K+      L+LF  + S G+ PDL  ++ LI+  C  GR      +LG
Sbjct: 212 VIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLG 271

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++R    P+V TF              N ++D  CK G + +AK +   M    V+P+V
Sbjct: 272 NMMRKGIMPNVQTF--------------NVLVDNFCKDGMISRAKTIMGFMVHVGVEPDV 317

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY SVI G C  +   +A ++F  M+ +G  PN+VT++ ++   CK   +++A  LL  
Sbjct: 318 VTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGE 377

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           M+  G+ PD  T++TL+ GFC  G+   AKELF +M 
Sbjct: 378 MVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMH 414



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +   M+R     P V +FN+++    K+       ++   +   G+ PD+ T++ +
Sbjct: 265 EATTLLGNMMR-KGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSV 323

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  C + ++     V   ++   F P++VT++SLI   CK                   
Sbjct: 324 ISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGL 383

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T++T+I G CK G  + AKELF  M + +  PN+ T   ++ G       +EA  
Sbjct: 384 NPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAIS 443

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM    ++ NVV +N+++D +C  GK+++A  L   +   G++ D   Y T++ G C
Sbjct: 444 LFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLC 503

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G ++ A+ L + ME  GC
Sbjct: 504 KEGLLDDAENLLMKMEENGC 523



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  I  +M+ +   P  V+  +++ G    ++  D V  +F+ +   G  P+L T+S 
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAV-KVFELMIHKGFLPNLVTYSS 357

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAI----------- 121
           LI+ +CK   ++    +LG ++ S   PDVVT+++LI    K  KP+A            
Sbjct: 358 LIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHD 417

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 T   I+DGL K  F  +A  LF +M+  N++ NVV Y  V+ G C     N+A+
Sbjct: 418 QHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQ 477

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +  +G++ +VV +  ++  LCK G +D+A +LL  M ++G  P+ FTYN  + G 
Sbjct: 478 ELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGL 537

Query: 236 CLTGRVNHAKELFVSMESMG 255
                ++ + +  + M+  G
Sbjct: 538 LQRYDISRSTKYLLLMKGKG 557


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    +    +  R+ S G  PD+ T++I+I  FC  G++     +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L+    P V+T+T LI                     K  +PD +TYN II G+CK
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  VDKA EL   +  +  KP+++TY  ++R       W+E ++L  EM+  G +PNVVT
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++++  LC++GK++EA +LL  M + G++PDA+ Y+ L+ GFC  GR++ A E    M 
Sbjct: 316 HSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMI 375

Query: 253 SMGC 256
           S GC
Sbjct: 376 SDGC 379



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI+L  L     +     L   + S G  P++ THSILI   C+ G+V     +
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      PD   +  LI                       C PD + YNTI+ GLC+
Sbjct: 336 LRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCR 395

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A E+F K+ +    PNV +Y ++      + D   A  + +++++QG+ P+ +T
Sbjct: 396 TGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEIT 455

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++G +DEA  LL  M     RP+  +YN +L G C   R N A E+  +M 
Sbjct: 456 YNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMT 515

Query: 253 SMGC 256
             GC
Sbjct: 516 EKGC 519



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NIM+G        D  L +F+ L      P + T++ILI      G +     +
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +L     PD +T+ ++I+                      CKPD ITYN ++  L  
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLS 290

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G   + ++L  +M     KPNVVT++ +I   C      EA  L   M ++G++P+   
Sbjct: 291 RGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYC 350

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++   C+ G++D A+  L+ MI  G  PD   YNT++ G C TG+ + A E+F  ++
Sbjct: 351 YDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410

Query: 253 SMGC 256
            +GC
Sbjct: 411 EVGC 414



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 21/242 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + +I++G L ++   +  ++L + +   GL PD Y +  LI  FC+ GR+      
Sbjct: 311 PNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEF 370

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++     PD+V + +++                       C P+  +YNT+   L  
Sbjct: 371 LEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWS 430

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A E+ LK+ ++ + P+ +TY S+I   C     +EA  L ++M     +PNVV+
Sbjct: 431 SGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVS 490

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  LCK  + ++A  +L  M + G +P+  TY  L++G   +G    A EL  S+ 
Sbjct: 491 YNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLH 550

Query: 253 SM 254
            M
Sbjct: 551 GM 552



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 20/200 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VC 116
           L+N  C+ G+ +     L  ++   +TPDV+  T LIK                      
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD   YN +I G  K   ++ A  +  +MK +   P+VVTY  +I  FC     + A  
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F E++    +P V+T+ ++++    +G +D A  LLD M+  G+ PD  TYN ++ G C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 237 LTGRVNHAKELFVSMESMGC 256
               V+ A EL  S+ S GC
Sbjct: 255 KEMMVDKAFELLRSLSSRGC 274



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F+ +  +   PP VSS+N +   L  +      L +  +L + G+ PD  T++ 
Sbjct: 400 DQALEVFEKLDEVG-CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+C C+ G V     +L  +    + P+VV              +YN I+ GLCK    
Sbjct: 459 LISCLCRDGMVDEAIELLVDMQSGRYRPNVV--------------SYNIILLGLCKVNRA 504

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           + A E+   M +K  +PN  TY  +I G  ++    EA  L
Sbjct: 505 NDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 138/261 (52%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+     M R     P V +++ ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 287 PKEAIGTLKKM-RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------------- 115
            L+  +   G +     +L  ++R+   PD   F  LI       KV             
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ + Y T+ID LCK G VD A   F +M D+ + PN++ YTS+I G C  + W++A
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L +EM+D+G+  N + FN I+D  CK G++ E+  L DLM++ GV+PD  TYNTL+DG
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            CL G+++ A +L  SM S+G
Sbjct: 526 CCLAGKMDEATKLLASMVSVG 546



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   + D M+R +   P    FNI++   AK +  D  + +F ++   GL P++  +  +
Sbjct: 359 EMHALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPD----------------- 119
           I+  CK G V    +   +++    TP+++ +TSLI  +C  D                 
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 120 ---AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
               I +N+IID  CK+G V ++++LF  M    VKP+++TY ++I G C A   +EA +
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+  GV+P++VT+  +++  C+  +MD+A +L   M+  GV P+  TYN +L G  
Sbjct: 538 LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 597

Query: 237 LTGRVNHAKELFVSMESMG 255
            T R   AKEL+VS+   G
Sbjct: 598 HTRRTAAAKELYVSITKSG 616



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 27/274 (9%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            D+   +P  A+  ++ M R       P V ++ I++GC  +    D   +    +   G
Sbjct: 63  ADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKG 122

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
              D  T + L+   C   R S    +VL R+      PDV ++ +L+K +C        
Sbjct: 123 FRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEA 182

Query: 118 ----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                           PD ++YNT+++G  K+G  DKA   + +M D+ + P+VVTY+S+
Sbjct: 183 LELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSI 242

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I   C A   ++A  +   M+  GV P+ +T+N I+   C +G+  EA   L  M   GV
Sbjct: 243 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 302

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+  TY++L++  C  GR   A+++F SM   G
Sbjct: 303 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 16/241 (6%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+N +L    K    D   S +  +   G+ PD+ T+
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +I   CK   +     VL  ++++   PD               +TYN+I+ G C  G
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPD--------------CMTYNSILHGYCSSG 285

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +A     KM+   V+PNVVTY+S++   C      EA+++F  M  +G++P++ T+ 
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + E  +LLDLM+++G++PD   +N L+  +    +V+ A  +F  M   
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 255 G 255
           G
Sbjct: 406 G 406



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+   G  PD+++++ L+   C   R      +L  +   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++ +++                     +   PD +TY++II  LCK   +
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+PNVVT++ +
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 312

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M+ LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M R H   P V  +  ++  L K+   D  +  F+++   GL P++  ++ 
Sbjct: 393 DQAMLVFSKM-RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  C   +      ++  +L      + + F S+I                       
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD ITYNT+IDG C  G +D+A +L   M    VKP++VTY ++I G+C  +  ++A 
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  GV PN++T+N+I+  L    +   A  L   + + G + +  TYN +L G 
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 236 CLTGRVNHAKELFVSM 251
           C     + A  +F ++
Sbjct: 632 CKNNLTDEALRMFQNL 647



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E+  +FD M+R+   P  ++   ++ GC    K  D    L   + S G+ PD+ T+  L
Sbjct: 499 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN +C++ R+     +   ++ S  +P++              ITYN I+ GL       
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNI--------------ITYNIILQGLFHTRRTA 603

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKEL++ +     +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN+++
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L K G+MDEA  L      +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGC 722


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FN +L  L         L L  R+   G  P L T + L+N  C  G+VS   V+
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           + R++ + F P+ VT+  ++ V CK                     DA+ Y+ IIDGLCK
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  LF +M+ K  K +++TY ++I GFC A  W++  +L  +M+ + + PNVVT
Sbjct: 276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+V++D   K GK+ EA  LL  M+Q G+ P+  TYN+L+DGFC   R+  A ++   M 
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query: 253 SMGC 256
           S GC
Sbjct: 396 SKGC 399



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 18/251 (7%)

Query: 5   SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS 64
           SSG   +  I  ++A+ +F  M++  P  P V  FN +   +AK K Y+ VL+L K++ S
Sbjct: 61  SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
            G+   +YT SI+INCFC+  ++S+ F  +G+I++  + PD V F              N
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIF--------------N 162

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+++GLC +  V +A EL  +M +   KP ++T  +++ G C     ++A  L   M++ 
Sbjct: 163 TLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVET 222

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G QPN VT+  +++ +CK+G+   A  LL  M +  ++ DA  Y+ ++DG C  G +++A
Sbjct: 223 GFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282

Query: 245 KELFVSMESMG 255
             LF  ME  G
Sbjct: 283 FNLFNEMEIKG 293



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D M+ M   P  ++  N ++  L  N      + L  R+  TG  P+  T+  
Sbjct: 175 SEALELVDRMVEMGHKPTLIT-LNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++N  CK G+ +    +L ++       D V ++ +I                     K 
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D ITYNT+I G C  G  D   +L   M  + + PNVVT++ +I  F       EA 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EMM +G+ PN +T+N ++D  CK  +++EA  ++DLMI  G  PD  T+N L++G+
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   R++   ELF  M   G
Sbjct: 414 CKANRIDDGLELFREMSLRG 433



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 21/235 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++  L K+   D   +LF  +   G   D+ T++ LI  FC  GR   G  +L  ++
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           +   +P+VVTF+ LI                     +   P+ ITYN++IDG CK+  ++
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++   M  K   P+++T+  +I G+C AN  ++   LF EM  +GV  N VT+N ++
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C++GK++ A  L   M+   VRPD  +Y  LLDG C  G +  A E+F  +E
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++G       +D    L + +    + P++ T S+LI+ F K G++     +L 
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +++    P+ +T+ SLI                     K C PD +T+N +I+G CK  
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D   ELF +M  + V  N VTY ++++GFC +     AK+LF EM+ + V+P++V++ 
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++D LC NG++++A  +   + +  +  D   Y  ++ G C   +V+ A +LF S+   
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537

Query: 255 G 255
           G
Sbjct: 538 G 538



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + D M+      P + +FNI++    K    D  L LF+ ++  G+  +  T++ L
Sbjct: 386 EAIQMVDLMIS-KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  FC+ G++     V  ++ +   +  V          +PD ++Y  ++DGLC  G ++
Sbjct: 445 VQGFCQSGKLE----VAKKLFQEMVSRRV----------RPDIVSYKILLDGLCDNGELE 490

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA E+F K++   ++ ++  Y  +I G C A+  ++A  LF  +  +GV+ +   +N+++
Sbjct: 491 KALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ELC+   + +A  L   M + G  PD  TYN L+           A EL   M+S G
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    ++   +    LF+ + S  + PD+ ++ IL++  C  G +     + G+I
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S    D+  +  +I                     K  K DA  YN +I  LC++  +
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  LF KM ++   P+ +TY  +IR     +D   A  L  EM   G   +V T  ++
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619

Query: 197 MDELCKNGKMDEASSLLDLM 216
           ++ L  +G++D+  S LD++
Sbjct: 620 INML-SSGELDK--SFLDML 636


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 58/292 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+R  P  P V+SF+ +L  +   KHY +V+SLF+ ++   +    +  SI
Sbjct: 54  DDAFSLFRQMVRTKP-LPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           ++N  C M R   GF VL    +     + VTFT+LI+                      
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 115 VCKPDAITYNTIIDGLCKQG-----------------------------------FVDKA 139
           +C+P+ + Y T+++GLCK+G                                    +D A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGA 232

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +MK K++ P++ TY+++I   C  + W   + LF+EM+   + PNV TFN ++D 
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDG 292

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LCK GK+++A  ++  MI+ GV PD  TYN ++DG+ L G+V+ A+E+F SM
Sbjct: 293 LCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 132/259 (50%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  ++R +   P    +  ++  L K  H      L + +      P+  T++I+
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIV 219

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ FCK G +     +L  + +    PD+ T+++LI  +CK                   
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T+N++IDGLCK+G V+ A+E+   M +K V P+V+TY  +I G+      + A+ 
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+++ ++P+++++N++++   +  K+DEA  +   + Q G++P   T N LL G  
Sbjct: 340 IFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A+  F  M S G
Sbjct: 400 ELGRTKSAQNFFDEMLSAG 418



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 21/248 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ++    + P   ++ I++    K+   D   SL   +    + PD++T+S LI+  CK+ 
Sbjct: 203 LMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
           +  +   +   ++     P+V TF S+I  +CK                    PD ITYN
Sbjct: 263 QWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            IIDG   +G VD+A+E+F  M +K+++P++++Y  +I G+      +EA ++  E+  +
Sbjct: 323 MIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQK 382

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G++P++VT NV++  L + G+   A +  D M+  G  PD +T+ TLL G+   G V  A
Sbjct: 383 GLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEA 442

Query: 245 KELFVSME 252
              F  +E
Sbjct: 443 MSHFHKLE 450



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 126/280 (45%), Gaps = 56/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + +++ ++  L K   ++ V +LF  +    ++P++ T + +I+  CK G+V     
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEE 304

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           ++  ++     PDV+T+  +I                     K  +PD I+YN +I+G  
Sbjct: 305 IMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYA 364

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP--- 188
           +Q  +D+A ++  ++  K +KP++VT   ++ G         A+  F EM+  G  P   
Sbjct: 365 RQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLY 424

Query: 189 --------------------------------NVVTFNVIMDELCKNGKMDEASSLLDLM 216
                                           N+  +  ++D LCKNGK+D+A +  + +
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL 484

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G+ PD  TY  ++ G+C  G ++ AK++   ME  GC
Sbjct: 485 PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 15/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  IFD M+      P + S+NI++   A+ K  D  + + + ++  GL P + T ++
Sbjct: 335 DRAREIFDSMIN-KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   ++GR          +L +   PD+ T              + T++ G  K G V
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYT--------------HCTLLGGYFKNGLV 439

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F K++ +    N+  YT+VI G C     ++A   F ++   G+ P+V+T+  +
Sbjct: 440 EEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAM 499

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +   C+ G +DEA  +L  M  +G   D  TYN ++ GF  + +V+  K
Sbjct: 500 ISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMK 548



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 21/205 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N++L  L +     +  + F  + S G  PDLYTH  L+  + K G V      
Sbjct: 386 PSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSH 445

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++ R     ++  +T++I  +CK                    PD ITY  +I G C+
Sbjct: 446 FHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ 505

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+AK++  KM+D     +  TY  ++RGF  +N  +E K    E+  +       T
Sbjct: 506 EGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAAT 565

Query: 193 FNVIMDELCKNGKMDEASSLLDLMI 217
             ++MD + ++  +      + L I
Sbjct: 566 VELLMDIIAEDPSITRKMHWIKLHI 590


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 142/274 (51%), Gaps = 36/274 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-------NKHYDTVLSLFKRLN---STG 66
           ++AL +FD +L  H  P  V +FN +L  +++           + V+SLF R+    +  
Sbjct: 31  DDALKLFDGLL-THARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------ 114
           + PD  T+SILI CFC+MGR+ HGF   G IL+S +  + +    L+K            
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 115 ----------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD---KNVKPNVVTYTSV 161
                      C PD ++YNT++ G C +   ++A EL   M D   ++  PNVV+Y  V
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIV 209

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I GF      ++A  LF+EMMD+G+QPNVVT+  ++D LCK   +D A  +   MI  GV
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +PD  TYN L+ G+   G+      +   M + G
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG 303



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+R     P V+ + I++   A       +  L   +   GL PD +  +I+
Sbjct: 326 EARFLFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
              + K   +     +  ++ +   +PDVV               Y  +ID LCK G VD
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVN--------------YGALIDALCKLGRVD 430

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M ++ V PN+  + S++ G C  + W +AK  + EM++QG++P+VV FN I+
Sbjct: 431 DAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTIL 490

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++ +A  L+DLM + G RP   +Y TL+ G CL GR++ A +    M S+G
Sbjct: 491 CNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI+    AK    D  + +F ++   GL PD+  +  LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLK 435

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     P++  F SL+                     +  +PD + +NTI+  LC 
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V KA+ L   M+    +P V++YT++I G C     +EA +    M+  G++P+  T
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWT 555

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C+ G++D+A  +   M+++G+ P   TY+T+L G   T R + AKEL+++M 
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615

Query: 253 SMG 255
           + G
Sbjct: 616 TSG 618



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+ I++         D   +LF  +   G+ P++ T++ +I+  CK   V     
Sbjct: 200 PPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEG 259

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           V  +++     PD  T+  LI                        KPD  TY ++++ LC
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC 319

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G   +A+ LF  M  K +KPNV  Y  +I G+      +E   L   M++ G+ P+  
Sbjct: 320 NNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            FN+I     K   +DEA  + + M Q G+ PD   Y  L+D  C  GRV+ A   F  M
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 252 ESMG 255
            + G
Sbjct: 440 MNEG 443



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  FN +L  L           L   +   G  P + +++ LI   C          +
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHC----------L 530

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +GRI  +  + DV+    L    KPD  TYNT++ G C+ G +D A  +F +M    + P
Sbjct: 531 VGRIDEAAKSLDVMLSVGL----KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITP 586

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY++++ G      ++EAK L++ M+  G Q N+  +N+I++ L KN  +DEA  L 
Sbjct: 587 GVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF 646

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +     + +  T+N ++     +GR   A  LF ++ S G
Sbjct: 647 QSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYG 688



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  + D M R+  + P V S+  ++G        D        + S GL PD +T++ L
Sbjct: 501 KAQRLIDLMERV-GTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C+ GR+   + V   +LR+  TP VV              TY+TI+ GL       
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVV--------------TYSTILHGLFTTRRFS 605

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKEL+L M     + N+  Y  ++ G    N  +EA +LF  +  +  Q  + TFN+++
Sbjct: 606 EAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMI 665

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K+G+ ++A  L   +  +G+ PD FTY  + +     G +    +LF +ME  G
Sbjct: 666 GALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 15/197 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  MLR +   P V +++ +L  L   + +     L+  + ++G   +++ ++I
Sbjct: 570 DDAYGVFREMLR-NGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNI 628

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N   K   V   F +   +    F  ++ TF              N +I  L K G  
Sbjct: 629 ILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTF--------------NIMIGALFKSGRN 674

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  LF  +    + P+V TY  +           E   LF  M   G  PN    N +
Sbjct: 675 EDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNAL 734

Query: 197 MDELCKNGKMDEASSLL 213
           +  L   G +  A + L
Sbjct: 735 VRRLLHRGDITRAGAYL 751


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 149/251 (59%), Gaps = 25/251 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L  H SP  +  FN +LG L K K+Y TV+SL K+++  G+  +L T SILINCFC +G
Sbjct: 2   LLVRHTSP--IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLG 59

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYN 124
           +++  F +LG+IL+  + P+ +T+T+L+K +C                    + + ++Y 
Sbjct: 60  QMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYG 119

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+++GLCK G    A +L   ++D++ +PNVV Y+++I G C     NEA  L+ EM  +
Sbjct: 120 TLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAR 179

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PNV+T+N ++   C  G++  A SLL  MI   + PD +T++ L+D  C  G+  +A
Sbjct: 180 EIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NA 237

Query: 245 KELFVSMESMG 255
           K++F +M  MG
Sbjct: 238 KQIFHAMVQMG 248



 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 134/250 (53%), Gaps = 19/250 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+    + P V  ++ ++  L K+K  +    L+  +++  +FP++ T++ LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAG 199

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------PDAITYNTI 126
           ++   F +L  ++     PDV TF+ LI  +CK                  P+  +YN +
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIM 259

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+GLCK   VD+A  L  +M  KN+ P+ VTY S+I G C +     A  L  EM  +G 
Sbjct: 260 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 319

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
             +VVT+  ++D LCKN  +D+A++L   M + G++P  +TY  L+DG C  GR+ +A+E
Sbjct: 320 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQE 379

Query: 247 LFVSMESMGC 256
           LF  +   GC
Sbjct: 380 LFQHLLVKGC 389



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 16/223 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+I++  L K         +F  +   G+ P++Y+++I+IN  CK  RV      
Sbjct: 218 PDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAM-- 273

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +LR     ++V          PD +TYN++IDGLCK G +  A  L  +M  +    
Sbjct: 274 --NLLREMLHKNMV----------PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPA 321

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYTS++   C   + ++A  LF++M ++G+QP + T+  ++D LCK G++  A  L 
Sbjct: 322 DVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELF 381

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             ++  G   D +TY  ++ G C  G  + A  +   ME  GC
Sbjct: 382 QHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 424



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 22/221 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF  M++M  +P  V S+NIM+  L K K  D  ++L + +    + PD  T++ LI+  
Sbjct: 240 IFHAMVQMGVNPN-VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 298

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDA 120
           CK GR++    ++  +       DVVT+TSL+  +CK                    P  
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 358

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TY  +IDGLCK G +  A+ELF  +  K    +V TYT +I G C    ++EA  +  +
Sbjct: 359 YTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSK 418

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           M D G  PN VTF +I+  L +  + D+A  LL  MI  G+
Sbjct: 419 MEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 152/279 (54%), Gaps = 41/279 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M+ MHP P  V  F  +LG +AK ++Y T + L+  +   G+ P   T +I
Sbjct: 36  DDAVALFHRMVDMHPLPSIVE-FTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LINCFC MG++   F V+G+IL+    P+VVTFT+L+K                      
Sbjct: 95  LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154

Query: 116 CKPDAITYNTIIDGLCKQ--GFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWN 172
            + D + Y T+I+GLCK   G    A +L  KM+++  VKPN++ Y +V+ G C   + N
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNIN 214

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCK----------------NGKMDEASSLLDLM 216
           EA+ L  +M+ QG+ P++ T++ ++  LC+                N K+DEA  L ++M
Sbjct: 215 EARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVM 274

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I+ G + D   YN L++G+CL  +V  A++LF  M   G
Sbjct: 275 IERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERG 313



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 128/238 (53%), Gaps = 4/238 (1%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHS 75
           +AL I+D M+        V    ++ G C +K       + L +++    L  P+L  ++
Sbjct: 142 DALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYN 201

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKP-DAITYNTIIDGLCKQ 133
            +++  CK G ++   V+  +++     PD+ T++SLI  +C+        ++++G C  
Sbjct: 202 TVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLN 261

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             VD+A+ELF  M ++  + +++ Y  ++ G+C  N   EA++LF  M+++G QP+ +T+
Sbjct: 262 NKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITY 321

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++M   C   K+DEA +L   MI+ G+ PD ++YN L+ G+C   RV  A  L   M
Sbjct: 322 TILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDM 379



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 8/242 (3%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  A+ +   M       P +  +N ++  L K+ + +    L  ++   G+FPD++T+S
Sbjct: 177 PRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYS 236

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-----KPDAITYNTIIDGL 130
            LI   C+ G+      +L      C    V     L  V      + D I YN +++G 
Sbjct: 237 SLIYGLCRAGQRKEVTSLLNGF---CLNNKVDEARELFNVMIERGEQHDIINYNILMNGY 293

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C    V +A++LF  M ++  +P+ +TYT ++ G+C  +  +EA+ LF  M+++G+ P+V
Sbjct: 294 CLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDV 353

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            ++N+++   CK  ++ EA +LL+ M    + P+  TYN+++DG C +G +  A +L   
Sbjct: 354 WSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDE 413

Query: 251 ME 252
           M 
Sbjct: 414 MH 415



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+     P  ++   +M G    +K  D   +LF  +   GL PD+++++IL
Sbjct: 301 EARKLFHMMVERGEQPDTITYTILMHGYCLIDK-VDEARNLFHGMIERGLVPDVWSYNIL 359

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +CK  RV     +L  +      P+++T+ S++  +CK                   
Sbjct: 360 IKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQ 419

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEA 174
             PD  TYN +++ LC+   V+KA   F  +  +++  PNV +Y  +I G C     +EA
Sbjct: 420 PPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEA 479

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  M  + + P++VT+N+++D L    ++D+A +LL  ++  G+ P+  TYN L++G
Sbjct: 480 INLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILING 539

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GR   A+++ + +   G
Sbjct: 540 LHKGGRPKTAQKISLYLSIRG 560



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 25/229 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI++    K +     ++L + +    L P++ T++ +++  CK G +   + +
Sbjct: 351 PDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKL 410

Query: 94  LGRILRSCFTP-DVVTFTSLIK-VCK---------------------PDAITYNTIIDGL 130
           +  +   C  P DV T+  L++ +C+                     P+  +YN +I G 
Sbjct: 411 VDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGC 470

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   +D+A  LF  M  KN+ P++VTY  ++         ++A  L ++++DQG+ PN+
Sbjct: 471 CKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNL 530

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            T+N++++ L K G+   A  +   +   G  PD  TY  +++  C  G
Sbjct: 531 RTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY--IINELCKGG 577



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 67/121 (55%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   +D A  LF +M D +  P++V +T ++        +  A  L+  M  +GV P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTFN++++  C  G+MD A S++  +++ G RP+  T+ TL+ GFC+  ++  A  ++  
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 251 M 251
           M
Sbjct: 150 M 150



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%)

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C  +  ++A  LF  M+D    P++V F  I+  + K      A  L  LM   GV P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            T+N L++ FC  G+++ A  +   +   GC
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGC 120


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 145/253 (57%), Gaps = 19/253 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+R  P  P V  FN ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 59  EDAIDLFSDMVRSRP-LPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           LI CFC   ++       G+I +  F PDVVTF++L+                 ++C+P+
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +T+ T+++GLC++G V +A  L  +M +  ++PN +TY +++ G C   D   A  L  
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 180 EMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +M +   ++PNVV ++ I+D L K+G+  +A +L   M + G+ PD FTYN ++DGFC +
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 239 GRVNHAKELFVSM 251
           GR + A+ L   M
Sbjct: 298 GRWSEAQRLLQEM 310



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ +L  L         L LF ++      P++ T + L+N  C+ GRV     +
Sbjct: 145 PDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVAL 200

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P+ +T+ +++  +CK                     P+ + Y+ IIDGL 
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLW 260

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A  L+ +M++K + P++ TY  +I GFC +  W+EA+RL  EM+++ + PNVV
Sbjct: 261 KDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVV 320

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++ +++   K  K  EA  L D M+  G+ P+  TYN+++DGFC   R++ A+ +F  M
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM 380

Query: 252 ESMGC 256
            + GC
Sbjct: 381 ATKGC 385



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 21/255 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  M    P V  ++ ++  L K+  +    +L+  +   G+FPDL+T++ +I
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
           + FC  GR S    +L  +L     P+VVT+++LI                         
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII 351

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ITYN++IDG CKQ  +D A+ +F  M  K   P+V T+ ++I G+C A   ++   L
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTEL 411

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM + G+  +  T+N ++   C  G ++ A  L   MI  GV PD  T NTLLDG C 
Sbjct: 412 LHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 471

Query: 238 TGRVNHAKELFVSME 252
            G++  A E+F +M+
Sbjct: 472 NGKLKDALEMFKAMQ 486



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 27/261 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M R     P V +F  ++  L +       ++L  R+   GL P+  T+  
Sbjct: 164 SEALDLFHQMCR-----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 218

Query: 77  LINCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLI---------------------K 114
           +++  CK+G       +L ++   S   P+VV ++++I                     K
Sbjct: 219 IVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEK 278

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  TYN +IDG C  G   +A+ L  +M ++ + PNVVTY+++I  +     + EA
Sbjct: 279 GIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEA 338

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L+ EM+ +G+ PN +T+N ++D  CK  ++D A  +  +M   G  PD FT+NTL+DG
Sbjct: 339 EELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDG 398

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C   R++   EL   M   G
Sbjct: 399 YCGAKRIDDGTELLHEMTETG 419



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P V +FN ++      K  D    L   +  TGL  D  T++ LI+ FC +
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +  +++ S   PD+VT  +L+  +C                           
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + PN +TY+S+I G C  +  +
Sbjct: 498 FNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLD 557

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   P+VVTFN ++   CK G++D+   L   M + G+  DA TY TL+
Sbjct: 558 EATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 618 HGFRKVGNINGALDIFQEMISSG 640



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++  L     +     L+K +   G+ P+  T+S +IN  CK  R+     +
Sbjct: 503 PDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQM 562

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +    F+PDVVTF              NT++ G CK G VD   ELF +M  + +  
Sbjct: 563 FDSMGSKSFSPDVVTF--------------NTLVSGYCKAGRVDDGLELFCEMGRRGIVA 608

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++  A ++L
Sbjct: 609 DAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAML 668

Query: 214 D 214
           +
Sbjct: 669 E 669


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 135/252 (53%), Gaps = 25/252 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H   P   ++N +L  L          +L++R+   G  PD+ T++ L++ FCK+G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
           +     +    ++  F PDVVT+ +LI   CK                    PD +TYN+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQ 184
           +++GLCK G VD+A+ L +   DK   PNV+TY+++I G C      +EA +LF  ++ Q
Sbjct: 121 LVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P V T+N+++D L K  +++EA  L   +++HG+ PDA TY   +DG C  GRV  A
Sbjct: 178 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 237

Query: 245 KELFVSMESMGC 256
             +   M+  GC
Sbjct: 238 LLMLKDMDEKGC 249



 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 138/264 (52%), Gaps = 25/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  +L+     P V ++NI++  L K    +    LF  L   GL PD  T+++
Sbjct: 165 SEALKLFGSVLK-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 223

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+  CK GRV    ++L  +      PDVV+  ++I                     K 
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN--- 172
           C P+AI++NT+I G C+ G   KA   F +M  + VKP VVTY  ++ G C A       
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 343

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  LF  M+++G  P+VVT++ ++D L K GK+D+A  LL  M   G  P+ +TYN+L+
Sbjct: 344 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 403

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C   +V+ A ELFV+M   GC
Sbjct: 404 SGLCGLEKVDEALELFVAMVEKGC 427



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 138/259 (53%), Gaps = 20/259 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +++ M++   SP  V ++N +L    K    D  L +F      G  PD+ T++ 
Sbjct: 27  SDAQALYERMIKAGYSPD-VVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNA 85

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------P 118
           LIN FCK  ++     +L R++     PDVVT+ SL+  +CK                 P
Sbjct: 86  LINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSP 145

Query: 119 DAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           + ITY+T+I GLC++   V +A +LF  +  +  +P V TY  +I G    +  NEA  L
Sbjct: 146 NVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFEL 205

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  ++  G++P+ +T+ V +D LCK G++++A  +L  M + G  PD  ++N +++G C 
Sbjct: 206 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 265

Query: 238 TGRVNHAKELFVSMESMGC 256
             RV+ A+ L   ME+ GC
Sbjct: 266 EKRVDEAEVLLSGMEAKGC 284



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 146/332 (43%), Gaps = 93/332 (28%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL IFD  ++     P V ++N ++    K    D    + +R+ S  L PD+ T++ 
Sbjct: 62  DEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 77  LINCFCKMGRV---------------------------------SHGFVVLGRILRSCFT 103
           L+N  CK GRV                                 S    + G +L+  + 
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 104 PDVVT--------------------FTSLIK-VCKPDAITYNTIIDGLCKQG-------- 134
           P+V T                    F+ L+K   +PDAITY   IDGLCK G        
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 135 ---------------------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                                       VD+A+ L   M+ K   PN +++ ++I G C 
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPD 224
           A  W +A   F EM+ +GV+P VVT+N+++D LCK    G++ EA +L D MI+ G  PD
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 360

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             TY+ L+DG    G+++ A+ L  +ME+ GC
Sbjct: 361 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGC 392



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 25/240 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  +++ H   P   ++ + +  L K    +  L + K ++  G  PD+ +H+ 
Sbjct: 200 NEAFELFSGLVK-HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNA 258

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +IN  CK  RV    V+L  +     +P+ ++F +LI                     + 
Sbjct: 259 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 318

Query: 116 CKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            KP  +TYN ++DGLCK   +G + +A  LF  M +K   P+VVTY+++I G   A   +
Sbjct: 319 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 378

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+RL   M  +G  PNV T+N ++  LC   K+DEA  L   M++ G  PD  TY T++
Sbjct: 379 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 134/238 (56%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+      P + +++ ++  L K +  +TV+ L + + S GL P++YT +I 
Sbjct: 210 EALKVYRRMVS-EGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTIC 268

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G++   + +L R+  +               C PD +TY  +ID LC  G ++
Sbjct: 269 IRILGRAGKIDEAYGILKRMDDAG--------------CGPDVVTYTVLIDALCNAGKLN 314

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKELFLKMK  + KP+ VTY +++  F    D +  K  + EM   G  P+VVTF +++
Sbjct: 315 NAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILI 374

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK GK+DEA   LD+M + GV P+  TYNTL+ G     R++ A ELF SMES+G
Sbjct: 375 DALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 14/221 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N  L  LA+    +     F  L   GL PD  T++IL+ C+ K GRV     +
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKL 529

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  +               C P+ +  N++ID L K   VD+A ++F +MK+  + P
Sbjct: 530 LSEMEENG--------------CDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP 575

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY +++ G        EA  LF  M+     PN ++FN ++D LCKNG++D A  +L
Sbjct: 576 TVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKML 635

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
             M +    PD  TYNT++ G     RVN+A  LF  M+ +
Sbjct: 636 FRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV 676



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K +  +    LF ++ + G  PD++T+++ ++   K G++   F +
Sbjct: 786 PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L               + CKP+ IT+N +I GL K   +DKA +L+  +   +  P
Sbjct: 846 YEEML--------------FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSP 891

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              TY  +I G        EAK+ F EM+D G  PN   +N++M+   K G ++ A  L 
Sbjct: 892 TPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELF 951

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M++ G+RPD  +Y+ ++D  C+ G+V+ A   F  ++  G
Sbjct: 952 RRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSG 993



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 121/279 (43%), Gaps = 56/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F I +  L +    D    + KR++  G  PD+ T+++LI+  C  G++++   +
Sbjct: 260 PNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKEL 319

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             ++  S   PD VT+ +L+                         PD +T+  +ID LCK
Sbjct: 320 FLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL--------------- 177
            G VD+A      MK + V PN+ TY ++I G    N  +EA  L               
Sbjct: 380 VGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYT 439

Query: 178 --------------------FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                               F +M   G+ PN+V  N  +  L + G+++EA    + + 
Sbjct: 440 YILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLK 499

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G+ PDA TYN L+  +   GRV+ A +L   ME  GC
Sbjct: 500 KCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGC 538



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA    D M +     P + ++N ++  L +    D  L LF  + S GL    YT+ +
Sbjct: 384 DEAFGTLDVM-KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYIL 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVC- 116
            I+ + K G          ++  +   P++V                    F + +K C 
Sbjct: 443 FIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCG 502

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDAITYN ++    K G VD A +L  +M++    P VV   S+I     A+  +EA 
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAW 562

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M +  + P VVT+N ++  L K G++ EA++L   MI     P+  ++NTLLD  
Sbjct: 563 KMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCL 622

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V+ A ++   M  M C
Sbjct: 623 CKNGEVDLALKMLFRMTEMNC 643



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 21/252 (8%)

Query: 25   YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
            Y ++     P V ++N+ L  L K+     +  L++ +   G  P+  TH+I+I    K 
Sbjct: 812  YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKS 871

Query: 85   GRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITY 123
              +     +   ++   F+P   T+  LI                       C P+   Y
Sbjct: 872  NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 124  NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
            N +++G  KQG V+ A ELF +M  + ++P++ +Y+ ++   C     ++A   F E+  
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL 991

Query: 184  QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             G+ P++V +N++++ L ++ +++EA SL D M   G+ PD +TYN L+    + G V  
Sbjct: 992  SGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEE 1051

Query: 244  AKELFVSMESMG 255
            A +++  ++  G
Sbjct: 1052 AGKMYEELQLKG 1063



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 15/215 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             EA   F+ ML  +   P    +NI++    K    +T   LF+R+   G+ PDL ++SI
Sbjct: 910  EEAKQFFEEMLD-YGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSI 968

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            +++C C +G+V         +  S   PD+V               YN +I+GL +   V
Sbjct: 969  MVDCLCMVGKVDDALHYFEELKLSGLDPDLVC--------------YNLMINGLGRSQRV 1014

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A  LF +M+++ + P++ TY ++I     A    EA +++ E+  +G++PNV T+N +
Sbjct: 1015 EEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNAL 1074

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +G  D A ++   M+  G RP+  T+  L
Sbjct: 1075 IRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P   + NI++  L K+   D  + L+  L S    P  +T+  LI+   K+GR+      
Sbjct: 856  PNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQF 915

Query: 94   LGRILRSCFTP----------------DVVT----FTSLIKV-CKPDAITYNTIIDGLCK 132
               +L     P                DV T    F  ++K   +PD  +Y+ ++D LC 
Sbjct: 916  FEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCM 975

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
             G VD A   F ++K   + P++V Y  +I G   +    EA  LF EM ++G+ P++ T
Sbjct: 976  VGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYT 1035

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +N ++  L   G ++EA  + + +   G+ P+ FTYN L+ G  ++G  + A  ++  M 
Sbjct: 1036 YNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMM 1095

Query: 253  SMGC 256
              GC
Sbjct: 1096 VGGC 1099



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 23/233 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++ C  K    D  + L   +   G  P++   + LI+   K  RV   + +
Sbjct: 505 PDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKM 564

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             R+      P VVT+ +L+                       C P+ I++NT++D LCK
Sbjct: 565 FQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCK 624

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A ++  +M + N  P+V+TY +VI G    N  N A  LF   M + + P+ VT
Sbjct: 625 NGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLF-HQMKKVIYPDYVT 683

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHA 244
              ++  + K+G++++A  +    + H G   D   +  L+ G  +   +  +
Sbjct: 684 LCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQS 736



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 14/238 (5%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+A   F+ +  M        + N +L  L  ++  + ++ +F  +    +   + T+ 
Sbjct: 102 PNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYL 161

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +       G +    V L ++ +  F  +  ++  LI +              L K GF
Sbjct: 162 TIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHL--------------LLKSGF 207

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             +A +++ +M  + +KP++ TY++++       D      L  EM   G++PN+ TF +
Sbjct: 208 CREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTI 267

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +  L + GK+DEA  +L  M   G  PD  TY  L+D  C  G++N+AKELF+ M++
Sbjct: 268 CIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKA 325



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 26  MLRMHPSPPP-VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           MLR H      V  FN+M   + K +  +T L++FK L   G    L    + +    K+
Sbjct: 131 MLRAHRRVEDMVVVFNLMQKQIIK-RSINTYLTIFKVLYIRG---GLREAPVALEKMRKV 186

Query: 85  GRVSHGFVVLGRI---LRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKA 139
           G V +G+  +G I   L+S F  + +     +  +  KP   TY+ ++  L K+  ++  
Sbjct: 187 GFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETV 246

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +M+   ++PN+ T+T  IR    A   +EA  +   M D G  P+VVT+ V++D 
Sbjct: 247 MGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDA 306

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LC  GK++ A  L   M     +PD  TY TLLD F   G ++  KE +  ME+ G
Sbjct: 307 LCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADG 362



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 125/295 (42%), Gaps = 60/295 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M+     PP   SFN +L CL KN   D  L +  R+     FPD+ T++ 
Sbjct: 594 QEATALFKGMI-ADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNT 652

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------ 117
           +I    K  RV++ F +  + ++    PD VT  +L+             +V K      
Sbjct: 653 VIYGLIKENRVNYAFWLFHQ-MKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHV 711

Query: 118 ----------------------------PDAITYNTI----------IDGLCKQGFVDKA 139
                                        +++  NTI          +  LCK G    A
Sbjct: 712 GDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDA 771

Query: 140 KELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
             +FLK+ K   + P++  Y S+I G   A     A  LF +M + G  P+V T+N+ +D
Sbjct: 772 YNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLD 831

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            L K+GK+ E   L + M+  G +P+  T+N ++ G   +  ++ A +L+  + S
Sbjct: 832 ALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMS 886



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 15/181 (8%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           L+   CK G+    + V  ++ +S C TP +                YN++IDGL K   
Sbjct: 758 LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEA--------------YNSLIDGLLKARL 803

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            + A  LF KMK+    P+V TY   +     +    E   L+ EM+ +G +PN +T N+
Sbjct: 804 TEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNI 863

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  L K+  +D+A  L   ++     P  +TY  L+DG    GR+  AK+ F  M   G
Sbjct: 864 VIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYG 923

Query: 256 C 256
           C
Sbjct: 924 C 924


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N M+   +K    D+   +F R+ S G  PD+ T++I+I   C  G++   F V
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           +  +L+    P V+T+T LI+                       +PD  TYN II G+CK
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D+A +    +  +   P+VV+Y  ++R F   + W + +RL  +M+  G +PNVVT
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++++   C+ G++ EA ++L++M + G+ PD+++Y+ L+  FC  GR++ A E    M 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 253 SMGC 256
           S GC
Sbjct: 369 SDGC 372



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI+L        ++    L K +  +G  P++ THSILI+ FC+ GRV     V
Sbjct: 269 PDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNV 328

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +     TPD  ++  LI                       C PD + YNTI+  LCK
Sbjct: 329 LEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCK 388

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A ++F K+ +    P V  Y ++        +  +A  +  EM+ +G+ P+ +T
Sbjct: 389 FGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++G +DEA  LL  M     +P   ++N +L G C   RV    EL ++M 
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMV 508

Query: 253 SMGC 256
             GC
Sbjct: 509 EKGC 512



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 22/256 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R     P V ++NIM+G L      +    +   L   G  P + T++ILI   
Sbjct: 153 VFDRM-RSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEAT 211

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
              GR++    +   ++     PD+ T+ ++I+                      C PD 
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDV 271

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ++YN ++     +   +  + L   M     +PNVVT++ +I  FC      EA  +   
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEV 331

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M ++G+ P+  +++ ++   CK G++D A   L+ M+  G  PD   YNT+L   C  G 
Sbjct: 332 MKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGC 391

Query: 241 VNHAKELFVSMESMGC 256
            + A ++F  ++ +GC
Sbjct: 392 ADLALDVFEKLDEVGC 407



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 20/200 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VC 116
           L+N  C+ G+ +     L  ++   F PDVV  T LIK                      
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  +YN +I G  K   +D A ++F +M+ +   P+VVTY  +I   C       A  
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  E++  G +P+V+T+ ++++     G+++EA  L D ++  G+RPD +TYN ++ G C
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A +    + + GC
Sbjct: 248 KEGMEDRALDFVRHLSARGC 267



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L K    D  L +F++L+  G  P +  ++ + +     G       +
Sbjct: 374 PDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEM 433

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  ++R              K   PD ITYN++I  LC+ G VD+A  L + M+    +P
Sbjct: 434 ISEMIR--------------KGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQP 479

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V+++  V+ G C A+   E   L I M+++G  PN  ++ ++++ +   G   EA  L 
Sbjct: 480 TVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELA 539

Query: 214 DLMIQHGV 221
           + + + GV
Sbjct: 540 NSLYRLGV 547



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N M   L    +    L +   +   G+ PD  T++ LI+C C+ G V     
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIG 467

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +  + F P V++F              N ++ G+CK   V +  EL + M +K   
Sbjct: 468 LLVDMEATRFQPTVISF--------------NIVLLGMCKAHRVFEGIELLITMVEKGCL 513

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           PN  +Y  +I G  YA    EA  L   +   GV
Sbjct: 514 PNETSYVLLIEGIAYAGWRAEAMELANSLYRLGV 547


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 141/260 (54%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +   MLR    P   + FN+M+    K    D    LF+ +   G  PD+YT++I+
Sbjct: 359 DAFNLAQMMLRRDCKPSHFT-FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 417

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------ 118
           I+  C+  R+     +L R+  +   PDVVT+ S++  +CK                   
Sbjct: 418 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 477

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +T +T+IDGLCK   +D A++L  +M+     P+VV YT +I GFC A+  +++  
Sbjct: 478 FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 537

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F EM+D+G  P V+T+++++D+LCK+ ++ +   LL  M++ GV PDA  Y +++DG C
Sbjct: 538 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLC 597

Query: 237 LTGRVNHAKELFVSMESMGC 256
            +   + A EL+  M+  GC
Sbjct: 598 KSDSYDEAYELYKLMKQTGC 617



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N ++  L K    D    +++ L + G F D+ T S LI+  CK  R+     
Sbjct: 443 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEK 502

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +L  + R+   PDVV +T LI                     K C P  ITY+ +ID LC
Sbjct: 503 LLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 562

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   V     L   M ++ V P+ + YTSVI G C ++ ++EA  L+  M   G  P VV
Sbjct: 563 KSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVV 622

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+NV++D+LCK  ++DEA  LL++M   G  PD  TYN++ DGF  +   + A  LF +M
Sbjct: 623 TYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAM 682

Query: 252 ESMGC 256
           +S GC
Sbjct: 683 KSRGC 687



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++    K + +     L   +   G+ P    ++ +I   C  GRV    V 
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              + R+C  P V+T+T L+                       C P+ +TYNT+I+G CK
Sbjct: 225 YRDMQRNC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 283

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  LF +M + +  P+V TY  +I G+C      +  +L  EM+  G +PN +T
Sbjct: 284 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 343

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +MD L K+GK  +A +L  +M++   +P  FT+N ++D FC  G+++ A ELF  M 
Sbjct: 344 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403

Query: 253 SMGC 256
             GC
Sbjct: 404 DRGC 407



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L K+        + + +   G  P++ T++ LIN FCK+G +    V+
Sbjct: 234 PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVL 293

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL-- 130
             ++L +  +PDV T+  LI                       C+P+ ITYNT++D L  
Sbjct: 294 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 353

Query: 131 ---------------------------------CKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                            CK G +D A ELF  M D+   P++ T
Sbjct: 354 SGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYT 413

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I G C AN  ++A++L   M + G  P+VVT+N I+  LCK  ++DEA  + +++ 
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G   D  T +TL+DG C + R++ A++L   ME  G
Sbjct: 474 NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++ I++    K    D  L+ F  +   G  P + T+SI+I+  CK  RV  G 
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           ++L  +L    TPD              AI Y ++IDGLCK    D+A EL+  MK    
Sbjct: 572 MLLKTMLERGVTPD--------------AIVYTSVIDGLCKSDSYDEAYELYKLMKQTGC 617

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P VVTY  ++   C  +  +EA  L   M   G  P+ VT+N + D   K+ + D+A  
Sbjct: 618 APTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR 677

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           L   M   G  P  F Y+ LL       +++ A E++
Sbjct: 678 LFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +C PD+ITY+T+I+G CK     +A  L  +M+ + + P+   Y ++I+G C  N   ++
Sbjct: 162 LCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC-DNGRVDS 220

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +    M +   P+V+T+ +++D LCK+ ++ +AS +L+ MI+ G  P+  TYNTL++G
Sbjct: 221 ALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLING 280

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G ++ A  LF  M    C
Sbjct: 281 FCKLGNMDEAVVLFNQMLENSC 302


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 155/277 (55%), Gaps = 26/277 (9%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL++    ++  I  ++A  +F  ML+  P P  V  F  +L  +AK   +D V+ L+ 
Sbjct: 49  ERLRN----ELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDIVIYLYH 103

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-- 117
           ++ + G+  DLY+ +ILI+CFC+  R+S    +LG++++  F P +VT  SL+   C+  
Sbjct: 104 KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGN 163

Query: 118 ------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                             P+ + YNT+I+GLCK   ++ A E+F  M+ K ++ + VTY 
Sbjct: 164 RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYN 223

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G   +  W +A RL  +M+ + + PNV+ F  ++D   K G + EA +L   MI+ 
Sbjct: 224 TLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 283

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            V P+ FTYN+L++GFC+ G +  AK +F  M S GC
Sbjct: 284 SVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGC 320



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +F Y +          ++N ++  L+ +  +     L + +    + P++   + 
Sbjct: 201 NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G +     +   ++R    P+V T+ SLI                     K 
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYNT+I G CK   V+   +LF +M  + +  +  TY ++I G+C A   N A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M+D GV P++VT+N+++D LC NGK+++A  +++ + +  +  D  TYN ++ G 
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C T ++  A  LF S+   G
Sbjct: 440 CRTDKLKEAWCLFRSLTRKG 459



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 27/244 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIML------GCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           EA  ++  M+R     P V ++N ++      GCL   K+      +F  + S G FPD+
Sbjct: 272 EARNLYKEMIR-RSVVPNVFTYNSLINGFCIHGCLGDAKY------MFDLMVSKGCFPDV 324

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
            T++ LI  FCK  RV  G  +   +          T+  L+     DA TYNT+I G C
Sbjct: 325 VTYNTLITGFCKSKRVEDGMKLFCEM----------TYQGLV----GDAFTYNTLIHGYC 370

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G ++ A+++F +M D  V P++VTY  ++   C      +A  +  ++    +  +++
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N+I+  LC+  K+ EA  L   + + GV+PDA  Y T++ G C  G    A +L   M
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490

Query: 252 ESMG 255
           +  G
Sbjct: 491 KEDG 494



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 21/147 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    +    +    +F R+   G+ PD+ T++IL++C C  G++    V++  +
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +S    D++T+  +I                     K  KPDAI Y T+I GLC++G  
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 480

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIR 163
            +A +L  +MK+    P+   Y   +R
Sbjct: 481 READKLCRRMKEDGFMPSERIYDETLR 507


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +  R+ S    PD  T++I+I   C  G++     V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L ++L     P V+T+T LI+                       KPD  TYNTII G+CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A E+   ++ K  +P+V++Y  ++R       W E ++L  +M  +   PNVVT
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++  LC++GK++EA +LL LM + G+ PDA++Y+ L+  FC  GR++ A E   +M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 253 SMGC 256
           S GC
Sbjct: 396 SDGC 399



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 21/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L +  S P V S+NI+L  L     ++    L  ++ S    P++ T+SILI   C+ G+
Sbjct: 289 LELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
           +     +L  +     TPD  ++  LI                       C PD + YNT
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  LCK G  D+A E+F K+ +    PN  +Y ++      + D   A  + +EMM  G
Sbjct: 409 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+ +T+N ++  LC+ G +DEA  LL  M      P   TYN +L GFC   R+  A 
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528

Query: 246 ELFVSMESMGC 256
            +  SM   GC
Sbjct: 529 NVLESMVGNGC 539



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L ++   +  ++L K +   GL PD Y++  LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++     PD+V + +++                       C P++ +YNT+   L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  + L+M    + P+ +TY S+I   C     +EA  L ++M      P+VVT
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +N+++   CK  ++++A ++L+ M+ +G RP+  TY  L++G    G    A EL
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 20/194 (10%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAI 121
           C+ G       +L  ++R  + PDV+  T LIK                      +PD  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN +I+G CK   +D A  +  +M+ K+  P+ VTY  +I   C     + A ++  ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +    QP V+T+ ++++     G +DEA  L+D M+  G++PD FTYNT++ G C  G V
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 242 NHAKELFVSMESMG 255
           + A E+  ++E  G
Sbjct: 280 DRAFEMVRNLELKG 293



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 28/239 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S++ ++    +    D  +   + + S G  PD+  ++ ++   CK G+      +
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            G++     +P+  ++ ++                          PD ITYN++I  LC+
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A EL + M+     P+VVTY  V+ GFC A+   +A  +   M+  G +PN  T
Sbjct: 486 EGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETT 545

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELF 248
           + V+++ +   G   EA  L + +    VR DA   +++  L   F L   +  + + F
Sbjct: 546 YTVLIEGIGFAGYRAEAMELANDL----VRIDAISEYSFKRLHRTFPLLNVLQRSSQTF 600



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G   ++  L   M  K   P+V+  T +I+GF    +  +A R+ +E++++  QP+V
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRV-MEILEKFGQPDV 158

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
             +N +++  CK  ++D+A+ +LD M      PD  TYN ++   C  G+++ A ++   
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 251 MESMGC 256
           + S  C
Sbjct: 219 LLSDNC 224


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M R +   P V +F  ++  L K         + + +      P++ T+S 
Sbjct: 199 DEACKLFEKM-RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  CK G+V     V  R++     P+VVT+ SLI                       
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 317

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD ITYNT+IDGLCK G   +A  LF  MK K   P+V+TY+ +I GFC     + A+
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 377

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M+ Q V P+VVTF+ +++  C  G +D+A  LL+ M+     PD +TY +L+DGF
Sbjct: 378 TLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 437

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  GR+  A+ +   M   GC
Sbjct: 438 CKVGRMVEARRVLKRMAKRGC 458



 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++         D+ L L + + +TG  PD+ T++ LI+  CK GR      +
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 344

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
            G +      PDV+T++ LI   CK                    PD +T++T+++G C 
Sbjct: 345 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A+ L  +M   +  P+V TYTS++ GFC      EA+R+   M  +G QPNVVT
Sbjct: 405 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVT 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  C+ GK   A  LL+ M+ +GV+P+  TY +L+ GFC TG +  A+++   +E
Sbjct: 465 YTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLE 524



 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 134/244 (54%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    +    DT   LF+++   G  P+L T++ L++  C+ G +   + +
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 94  LGRILRSCFTPDVVTFTSL-------------IKV--------CKPDAITYNTIIDGLCK 132
           L  +      PD  ++ +L             +KV        C PD + Y+T+I GLCK
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 194

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A +LF KM++ + +P+VVT+T+++ G C  +   EA+++   M D+   PNV+T
Sbjct: 195 TGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 254

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK G++ +A  +   MI  G+ P+  TYN+L+ GFC+T  V+ A  L   M 
Sbjct: 255 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT 314

Query: 253 SMGC 256
           + GC
Sbjct: 315 ATGC 318



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 56/272 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++ IM+  L K        + F ++   G  P+ +T+++LIN FCK+ +V   +++L 
Sbjct: 7   VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 96  RILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNTIIDGLCKQG 134
            +  S   P+VVT++++I       KV              C P+ +TYNT++ GLC+ G
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 135 FVDKAKELFLKMKDKNVK-----------------------------------PNVVTYT 159
            +D+A EL  +M+++ ++                                   P+VV Y+
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G C     +EA +LF +M +   +P+VVTF  +MD LCK  ++ EA  +L+ M   
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 246

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              P+  TY++L+DG C TG+V  A+E+F  M
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K         LF  + +    PD+ T+S LI  FCK+ R+     +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L+    PDVVTF++L++                      C PD  TY +++DG CK
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+ +  +M  +  +PNVVTYT++I  FC A     A +L  EM+  GVQPNV+T
Sbjct: 440 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVIT 499

Query: 193 FNVIMDELCKNGKMDEASSLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  ++   C  G ++EA  +L+ L      + D F Y  ++DG C TGR++ A EL  ++
Sbjct: 500 YRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 559

Query: 252 ESMG 255
           +  G
Sbjct: 560 KQSG 563



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 116/219 (52%), Gaps = 14/219 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +++ ++  L K    D    LF+++      PD+ T + L++  CK  R+     
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           VL  +     TP+V+T++SL              IDGLCK G V  A+E+F +M  + ++
Sbjct: 239 VLETMEDRNCTPNVITYSSL--------------IDGLCKTGQVRDAQEVFKRMIVRGIE 284

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTY S+I GFC  N  + A  L  EM   G  P+++T+N ++D LCK G+  EA+ L
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 344

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              M      PD  TY+ L+ GFC   R++ A+ LF  M
Sbjct: 345 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K         +FKR+   G+ P++ T++ LI+ FC    V    ++
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +  +   PD++T+ +LI                     K C PD ITY+ +I G CK
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A+ LF  M  + V P+VVT+++++ G+C A   ++A+RL  EM+     P+V T
Sbjct: 370 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYT 429

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  CK G+M EA  +L  M + G +P+  TY  L+D FC  G+   A +L   M 
Sbjct: 430 YTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMV 489

Query: 253 SMG 255
             G
Sbjct: 490 GNG 492



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 108/181 (59%), Gaps = 18/181 (9%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTII 127
           ++ T +I+I+  CK  R+                P+  T+ + +K     P+  TYN +I
Sbjct: 6   NVITWTIMIDGLCKANRL----------------PEATTYFAKMKKKGTVPNEWTYNVLI 49

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +G CK   V +A  L  +MK+  + PNVVTY++VI GFC     + A +LF +M++ G  
Sbjct: 50  NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 109

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+VT+N ++  LC+NG MDEA  LLD M + G++PD F+Y+TL+ G C TG+++ A ++
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169

Query: 248 F 248
           F
Sbjct: 170 F 170



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 78/140 (55%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+ + IT+  +IDGLCK   + +A   F KMK K   PN  TY  +I GFC  +  + A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM + G+ PNVVT++ ++   C+  K+D A  L   M+++G  P+  TYNTLL G 
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G ++ A EL   M   G
Sbjct: 123 CRNGLMDEAYELLDEMRERG 142



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 23/207 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K         + KR+   G  P++ T++ LI+ FC+ G+ +  + +
Sbjct: 425 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKL 484

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           L  ++ +   P+V+T+ SLI                      + CK D   Y  ++DGLC
Sbjct: 485 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLC 544

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNV 190
           + G +  A EL   +K     P    Y ++IRG C   +  +A  +  EM + +  +PN 
Sbjct: 545 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNA 604

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMI 217
             +  ++ EL + G+ +EA++L D ++
Sbjct: 605 EAYEAVIQELAREGRHEEANALADELL 631


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +  R+ S    PD  T++I+I   C  G++     V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L ++L     P V+T+T LI+                       KPD  TYNTII G+CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A E+   ++ K  +P+V++Y  ++R       W E ++L  +M  +   PNVVT
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++  LC++GK++EA +LL LM + G+ PDA++Y+ L+  FC  GR++ A E   +M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 253 SMGC 256
           S GC
Sbjct: 396 SDGC 399



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D M     SP  V+ +NIM+G L      D  L +  +L S    P + T++I
Sbjct: 175 DDATRVLDRMRSKDFSPDTVT-YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI      G V     ++  +L     PD+ T+ ++I                     K 
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD I+YN ++  L  QG  ++ ++L  KM  +   PNVVTY+ +I   C      EA 
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M ++G+ P+  +++ ++   C+ G++D A   L+ MI  G  PD   YNT+L   
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+ + A E+F  +  +GC
Sbjct: 414 CKNGKADQALEIFGKLGEVGC 434



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 21/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L +    P V S+NI+L  L     ++    L  ++ S    P++ T+SILI   C+ G+
Sbjct: 289 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
           +     +L  +     TPD  ++  LI                       C PD + YNT
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  LCK G  D+A E+F K+ +    PN  +Y ++      + D   A  + +EMM  G
Sbjct: 409 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+ +T+N ++  LC+ G +DEA  LL  M      P   TYN +L GFC   R+  A 
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528

Query: 246 ELFVSMESMGC 256
            +  SM   GC
Sbjct: 529 NVLESMVGNGC 539



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L ++   +  ++L K +   GL PD Y++  LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++     PD+V + +++                       C P++ +YNT+   L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  + L+M    + P+ +TY S+I   C     +EA  L ++M      P+VVT
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +N+++   CK  ++++A ++L+ M+ +G RP+  TY  L++G    G    A EL
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 20/195 (10%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAI 121
           C+ G       +L  ++R  + PDV+  T LIK                      +PD  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN +I+G CK   +D A  +  +M+ K+  P+ VTY  +I   C     + A ++  ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +    QP V+T+ ++++     G +DEA  L+D M+  G++PD FTYNT++ G C  G V
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 242 NHAKELFVSMESMGC 256
           + A E+  ++E  GC
Sbjct: 280 DRAFEMVRNLELKGC 294



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 28/239 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S++ ++    +    D  +   + + S G  PD+  ++ ++   CK G+      +
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            G++     +P+  ++ ++                          PD ITYN++I  LC+
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A EL + M+     P+VVTY  V+ GFC A+   +A  +   M+  G +PN  T
Sbjct: 486 EGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETT 545

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELF 248
           + V+++ +   G   EA  L + +    VR DA   +++  L   F L   +  + + F
Sbjct: 546 YTVLIEGIGFAGYRAEAMELANDL----VRIDAISEYSFKRLHRTFPLLNVLQRSSQTF 600


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 136/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+M+    K    +  LS+  R++ +   PD+ T++ ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 94  LGRIL-RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           L R+L R C+ PDV+T+T LI+                      C PD +TYN +++G+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A +    M     +PNV+T+  ++R  C    W +A++L  +M+ +G  P+VV
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN++++ LC+ G +  A  +L+ M QHG +P++ +YN LL GFC   +++ A E    M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 252 ESMGC 256
            S GC
Sbjct: 406 VSRGC 410



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 14/219 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   S+N +L    K K  D  +   +R+ S G +PD+ T++ ++   CK G+V  
Sbjct: 373 HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVED 432

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++                K C P  ITYNT+IDGL K G   KA +L  +M+ K
Sbjct: 433 AVEILNQLSS--------------KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           ++KP+ +TY+S++ G       +EA + F E    G++PN VTFN IM  LCK+ + D A
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRA 538

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              L  MI  G +P+  +Y  L++G    G    A EL 
Sbjct: 539 IDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 15/235 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M R     P V ++N+++  + K    D  +     + S+G  P++ TH+I++
Sbjct: 258 AMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
              C  GR      +L  +LR  F+P VVTF              N +I+ LC++G + +
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTF--------------NILINFLCRKGLLGR 362

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++  KM     +PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++ 
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            LCK+GK+++A  +L+ +   G  P   TYNT++DG    G+   A +L   M +
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 18/208 (8%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           G  PD+   + LI  FC++G+      +L  +  S   PDV+T+  +I   CK       
Sbjct: 132 GNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA 191

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD +TYNTI+  LC  G + +A E+  +M  ++  P+V+TYT +I   C 
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            +    A +L  EM D+G  P+VVT+NV+++ +CK G++DEA   L+ M   G +P+  T
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT 311

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +N +L   C TGR   A++L   M   G
Sbjct: 312 HNIILRSMCSTGRWMDAEKLLADMLRKG 339



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 17/232 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR   SP  V +FNI++  L +       + + +++   G  P+  +++ L++ FCK  
Sbjct: 335 MLRKGFSPS-VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393

Query: 86  RVSHGFVVLGRIL-RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           ++      L R++ R C+               PD +TYNT++  LCK G V+ A E+  
Sbjct: 394 KMDRAIEYLERMVSRGCY---------------PDIVTYNTMLTALCKDGKVEDAVEILN 438

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           ++  K   P ++TY +VI G   A    +A +L  EM  + ++P+ +T++ ++  L + G
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K+DEA        + G+RP+A T+N+++ G C + + + A +  V M + GC
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 32/229 (13%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           N HY +V       NS+    D+ +++ L     + G +  GF  L  ++     PD++ 
Sbjct: 88  NGHYSSV-------NSSFALEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIP 139

Query: 109 FTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
            T+LI+  C+                    PD ITYN +I G CK G ++ A  +  +M 
Sbjct: 140 CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM- 198

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
             +V P+VVTY +++R  C +    +A  +   M+ +   P+V+T+ ++++  C++  + 
Sbjct: 199 --SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVG 256

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            A  LLD M   G  PD  TYN L++G C  GR++ A +    M S GC
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 129/233 (55%), Gaps = 18/233 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLRM P PP +  F+ +L  + + KHY TVLSL+K+++S G+  + YT +ILIN FC + 
Sbjct: 1   MLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLN 59

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           R+   F VLG IL+  + P   TFT+LI+              GLC +G + +A +LF K
Sbjct: 60  RLGFAFSVLGDILKLGYQPSTATFTTLIR--------------GLCVEGKIGEALQLFDK 105

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  +  +P+V+TY ++I G C      EA  LF +M+ +G+ PN  T++ ++  LC  G 
Sbjct: 106 MTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGH 165

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV---NHAKELFVSMESMG 255
             EA  L   MI   + PD  T+NTL+D  C  G +   + A  LF  M   G
Sbjct: 166 WKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQG 218



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++  L         L LF ++   G  PD+ T+  LIN  CK  +++    +
Sbjct: 78  PSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSL 137

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L    +P+  T++SLI                     +   PD +T+NT++D LCK
Sbjct: 138 FSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK 197

Query: 133 QGFV---DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           +G +   DKA  LF +M  + + P+ VTY ++I G C+     +A  LF EM+  G  P+
Sbjct: 198 EGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 257

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +VT+ ++ D LCKN ++ EA  LL ++    + PD   Y+ ++DG C  G +  A++LF 
Sbjct: 258 LVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFS 317

Query: 250 SMESMG 255
            + S G
Sbjct: 318 KLSSKG 323



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +FD M       P V ++  ++  L K++     LSLF  + + G+ P+ +T+S 
Sbjct: 97  GEALQLFDKMTG-EGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 155

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+  C +G       +   ++     PD +TF +L+  +CK                  
Sbjct: 156 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMS 215

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TYNT+I GLC  G +  A  LF +M      P++VTY  +    C  +   
Sbjct: 216 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 275

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  L   +    + P++  ++++MD +C+ G+++ A  L   +   G+ PD  TY  ++
Sbjct: 276 EAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMI 335

Query: 233 DGFCLTGRVNHAKELFVSMES 253
           +G C  G +  A +LF  M+ 
Sbjct: 336 NGLCQQGLLAEASKLFGEMDE 356



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 30/214 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN---KHYDTVLSLFKRLNSTGLFPDLYTH 74
           EA+ +F  M+     P  ++ FN ++  L K    +  D  + LF+ ++  GL PD  T+
Sbjct: 168 EAIRLFYAMIHRKIMPDQLT-FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTY 226

Query: 75  SILINCFCKMGRVS------HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           + LI+  C +GR+       H  VV G+I                    PD +TY  + D
Sbjct: 227 NTLIHGLCHVGRLRDAIALFHEMVVYGQI--------------------PDLVTYRILFD 266

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LCK   + +A  L   ++  N+ P++  Y+ V+ G C A +   A+ LF ++  +G+ P
Sbjct: 267 YLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHP 326

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +V T+ ++++ LC+ G + EAS L   M ++ + 
Sbjct: 327 DVRTYTIMINGLCQQGLLAEASKLFGEMDENDIE 360



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 22/172 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F+ M +    P  V+ +N ++  L         ++LF  +   G  PDL T+ I
Sbjct: 205 DKAMGLFEEMSQQGLIPDTVT-YNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 263

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L +  CK  R++   V+L  I  +   PD+  ++ ++                     K 
Sbjct: 264 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 323

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
             PD  TY  +I+GLC+QG + +A +LF +M + +++       +  +G  Y
Sbjct: 324 LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIESYSTFSRNAFKGIFY 375


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +  R+ S    PD  T++I+I   C  G++     V
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L ++L     P V+T+T LI+                       KPD  TYNTII G+CK
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A E+   ++ K  +P+V++Y  ++R       W E ++L  +M  +   PNVVT
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 331

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++  LC++GK++EA +LL LM + G+ PDA++Y+ L+  FC  GR++ A E   +M 
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 253 SMGC 256
           S GC
Sbjct: 392 SDGC 395



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D M     SP  V+ +NIM+G L      D  L +  +L S    P + T++I
Sbjct: 171 DDATRVLDRMRSKDFSPDTVT-YNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTI 229

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI      G V     +L  +L     PD+ T+ ++I                     K 
Sbjct: 230 LIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG 289

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD I+YN ++  L  QG  ++ ++L  KM  +   PNVVTY+ +I   C      EA 
Sbjct: 290 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 349

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M ++G+ P+  +++ ++   C+ G++D A   L+ MI  G  PD   YNT+L   
Sbjct: 350 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 409

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+ + A E+F  +  +GC
Sbjct: 410 CKNGKADQALEIFGKLGEVGC 430



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 21/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L +    P V S+NI+L  L     ++    L  ++ S    P++ T+SILI   C+ G+
Sbjct: 285 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 344

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
           +     +L  +     TPD  ++  LI                       C PD + YNT
Sbjct: 345 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 404

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  LCK G  D+A E+F K+ +    PN  +Y ++      + D   A  + +EM+  G
Sbjct: 405 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNG 464

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+ +T+N ++  LC+ G +D+A  LL  M      P   TYN +L GFC   R+  A 
Sbjct: 465 IDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 524

Query: 246 ELFVSMESMGC 256
           ++  SM   GC
Sbjct: 525 DVLDSMVGNGC 535



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 20/195 (10%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAI 121
           C+ G       +L  ++R  + PDV+  T LIK                      +PD  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN +I+G CK   +D A  +  +M+ K+  P+ VTY  +I   C     + A ++  ++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +    QP V+T+ ++++     G +DEA  LLD M+  G++PD FTYNT++ G C  G V
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 242 NHAKELFVSMESMGC 256
           + A E+  ++E  GC
Sbjct: 276 DRAFEMIRNLELKGC 290



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L ++   +  ++L K +   GL PD Y++  LI  FC+ GR+      
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++     PD+V + +++                       C P++ +YNT+   L  
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  + L+M    + P+ +TY S+I   C     ++A  L ++M      P+VVT
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVT 506

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +N+++   CK  ++++A  +LD M+ +G RP+  TY  L++G    G    A EL
Sbjct: 507 YNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 21/206 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S++ ++    +    D  +   + + S G  PD+  ++ ++   CK G+      +
Sbjct: 362 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 421

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            G++     +P+  ++ ++                          PD ITYN++I  LC+
Sbjct: 422 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCR 481

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VDKA EL + M+     P+VVTY  V+ GFC A+   +A  +   M+  G +PN  T
Sbjct: 482 EGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETT 541

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218
           + V+++ +   G   EA  L + +++
Sbjct: 542 YTVLIEGIGFAGYRAEAMELANDLVR 567


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L KN        +F  +   GL PD+ T+  L++ +   G +     +
Sbjct: 110 PDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDL 169

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++++    D   F  LI                     +   P+A+ Y T+IDGLCK
Sbjct: 170 LALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCK 229

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A   F +M DK + PNVV YTS+I   C  + W +A+ L  E++DQG+ PN+V 
Sbjct: 230 LGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVF 289

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN I+D LCK G++ E+  L DL+   GV PD  TY+TL+DG+CL G+++ A +L   M 
Sbjct: 290 FNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMV 349

Query: 253 SMG 255
           S+G
Sbjct: 350 SVG 352



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++    K +  D V+ +F ++   GL P+   +  +I+  CK+GR+    +   +++
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
               TP+VV +TSLI                         P+ + +NTI+D LCK+G V 
Sbjct: 245 DKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVI 304

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           ++K+LF  +    V P+V+TY+++I G+C A   + A +L   M+  G++P+ VT++ ++
Sbjct: 305 ESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLI 364

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  CK  +M++A +L   M  +GV PD  TYN +L G   T R   AKEL+  +   G
Sbjct: 365 NGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 18/187 (9%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD+ +++ +I+   K G V   ++    +L               +   PDA+TYN+II 
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLD--------------RRVSPDAVTYNSIIA 54

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K   +D+A E+   M    V PN  TY S++ G+C +    +A  +F +M   G++P
Sbjct: 55  ALSKAQAMDRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEP 110

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +VVT+N +MD LCKNGK  EA  + D M++ G++PD  TY TLL G+   G +    +L 
Sbjct: 111 DVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLL 170

Query: 249 VSMESMG 255
             M   G
Sbjct: 171 ALMVQNG 177



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 24/248 (9%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     ++A   +  ML    SP  V+ +N ++  L+K +  D  + +   +    +
Sbjct: 24  EGDV-----DKAYITYHEMLDRRVSPDAVT-YNSIIAALSKAQAMDRAMEVLTVM----V 73

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ +++ +C  G+      +  ++      PDVVT              YN+++
Sbjct: 74  MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVT--------------YNSLM 119

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D LCK G   +A+++F  M  + +KP++ TY +++ G+       E   L   M+  G+Q
Sbjct: 120 DYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQ 179

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            +   FN+++    K  K+DE   +   M Q G+ P+A  Y T++DG C  GR++ A   
Sbjct: 180 LDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLN 239

Query: 248 FVSMESMG 255
           F  M   G
Sbjct: 240 FEQMIDKG 247



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 16/174 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN +L  L K         LF  L   G+ PD+ T+S LI+ +C  G++     +
Sbjct: 285 PNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKL 344

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           L               T ++ V  KPD++TY+T+I+G CK   ++ A  LF +M+   V 
Sbjct: 345 L---------------TGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVN 389

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           P+++TY  ++ G         AK L+  + + G Q  + T+N+I+ +  K   +
Sbjct: 390 PDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSL 443



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           D    P+VV+Y ++I G     D ++A   + EM+D+ V P+ VT+N I+  L K   MD
Sbjct: 4   DGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMD 63

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            A  +L +M    V P+ FTYN+++ G+C +G+   A  +F  M S G
Sbjct: 64  RAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDG 107



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 181 MMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M D G   P+VV++N I+D L K G +D+A      M+   V PDA TYN+++       
Sbjct: 1   MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQ 60

Query: 240 RVNHAKELFVSMESMGC 256
            ++ A E+   M    C
Sbjct: 61  AMDRAMEVLTVMVMPNC 77


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 28/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTG 66
           EGD+     + AL I + M+    S   VS  N+++    K    +  L+  + + N  G
Sbjct: 237 EGDL-----DGALRIREQMVEFGCSWSNVS-VNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------- 113
            FPD YT + L+N  CK G V H   ++  +L+  + PDV T+ S+I             
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 114 --------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                   + C P+ +TYNT+I  LCK+  V++A EL   +  K + P+V T+ S+I+G 
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C   +   A  LF EM  +G +P+  T+N+++D LC  GK+DEA ++L  M   G     
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYNTL+DGFC   ++  A+E+F  ME  G
Sbjct: 471 ITYNTLIDGFCKANKIREAEEIFDEMEVHG 500



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 136/260 (52%), Gaps = 24/260 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ I D ML+     P V ++N ++  L K       +    ++ +    P+  T++ LI
Sbjct: 314 AIEIMDVMLQ-EGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLI 372

Query: 79  NCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI---------------------KVC 116
           +  CK  +V      L R+L S    PDV TF SLI                     K C
Sbjct: 373 STLCKENQVEEA-TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  TYN +ID LC +G +D+A  +  +M+      +V+TY ++I GFC AN   EA+ 
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEE 491

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM   GV  N VT+N ++D LCK+ ++++AS L+D MI  G +PD FTYN+LL  FC
Sbjct: 492 IFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFC 551

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A ++  +M S GC
Sbjct: 552 RGGDIKKAADIVQAMTSNGC 571



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L   +++   + LF+ + S G  PD +T+++LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++  S               C    ITYNT+IDG CK   + +A+E+F +M+   V  
Sbjct: 458 LKQMELSG--------------CARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSR 503

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY ++I G C +    +A +L  +M+ +G +P+  T+N ++   C+ G + +A+ ++
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIV 563

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M  +G  PD  TY TL+ G C  GRV  A +L  S++  G
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 34/251 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF------------ 81
           P VS+FN+++  L +       + + + + S GL PD  T + ++  +            
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 82  --------CKMGRVS-----HGFVVLGRILRSCFTPDVVTFTSLIKVCK---PDAITYNT 125
                   C    VS     HGF   GR+       D + F   +       PD  T+NT
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRV------EDALNFIQEMSNQDGFFPDQYTFNT 300

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +++GLCK G V  A E+   M  +   P+V TY SVI G C   +  EA     +M+ + 
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD 360

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             PN VT+N ++  LCK  +++EA+ L  ++   G+ PD  T+N+L+ G CLT     A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 246 ELFVSMESMGC 256
           ELF  M S GC
Sbjct: 421 ELFEEMRSKGC 431



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F+ M R     P   ++N+++  L      D  L++ K++  +G    + T++ LI
Sbjct: 419 AMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           + FCK  ++     +   +     + + VT+ +LI  +CK                    
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TYN+++   C+ G + KA ++   M     +P++VTY ++I G C A     A +L
Sbjct: 538 PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFC 236
              +  +G+      +N ++  L +  K  EA +L   M+ Q+   PDA +Y  +  G C
Sbjct: 598 LRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLC 657

Query: 237 LTG 239
             G
Sbjct: 658 NGG 660



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 60/128 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD   YN +++ L     +   +    KM    +KP+V T+  +I+  C A+    A  
Sbjct: 151 KPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M   G+ P+  TF  IM    + G +D A  + + M++ G      + N ++ GFC
Sbjct: 211 MLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 271 KEGRVEDA 278



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 56/111 (50%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           + D  +KP+   Y  ++      N+    +    +M   G++P+V TFNV++  LC+  +
Sbjct: 145 IDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  A  +L+ M  +G+ PD  T+ T++ G+   G ++ A  +   M   GC
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGC 255


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +   M ++   P  V+   ++ G  +K K  D V  LF  +   G  PD+ T+S +I
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV-KLFDEMVKMGYEPDVITYSTII 89

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CKMG  +    +L ++                K CKP+ + Y+TIID LCK   + +
Sbjct: 90  NGLCKMGSTTMAIQLLKKMEE--------------KGCKPNVVVYSTIIDSLCKDKLITE 135

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E   +M ++ + PNVVTY+S++ GFC     NEA  LF +M+++ V P+ VTFN+++D
Sbjct: 136 AMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVD 195

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L K G + EA  + + MI+ GV P+  TYN L+DG+C   +++ A++LF  M   GC
Sbjct: 196 GLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC 253



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 142/259 (54%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M++M    P V +++ ++  L K       + L K++   G  P++  +S +
Sbjct: 65  DAVKLFDEMVKM-GYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTI 123

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   ++     L  ++    +P+VVT++S++                     +  
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNV 183

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T+N ++DGL K+G + +A+ +F  M +K V+PNV TY +++ G+C  +  +EA++
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G  P+V ++N+++   CK+G++DEA  LL  M    + PD  TY+TL+ GFC
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A++L   M S G
Sbjct: 304 QDGRPQDAQKLLEEMRSYG 322



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA C+F+ M+      P V+++N ++         D    LF  +   G  P + +++IL
Sbjct: 205 EAQCVFETMIE-KGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I   CK GR+     +L  +     TPD VT+++L+K  C+                   
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ ++DGLCKQG +D+A EL   M++  ++PN+  YT +I+G C       A+ 
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +G+QP+VVT+ V++  L K G  +EA  L   M  HG  P++ TYN ++ GF 
Sbjct: 384 LFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFL 443

Query: 237 LTGRVNHAKELFVSMESMG 255
             G  ++A  L   M   G
Sbjct: 444 RNGDTSNAGRLIEEMVGRG 462



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  M+  +  P  V+ FNI++  L+K         +F+ +   G+ P++ T++ 
Sbjct: 169 NEATSLFKQMVERNVMPDTVT-FNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +C   ++     +   ++R              K C P   +YN +I G CK G +
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVR--------------KGCAPSVRSYNILIKGHCKSGRI 273

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+AK L  +M  K + P+ VTY+++++GFC      +A++L  EM   G+ P+++T++++
Sbjct: 274 DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIV 333

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D LCK G +DEA  LL  M +  + P+ F Y  L+ G C  G++  A+ELF ++
Sbjct: 334 LDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 135/284 (47%), Gaps = 58/284 (20%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M+P PP    F  + G + K KHY T +SL K   S G+ PD++T +I+INC C +    
Sbjct: 1   MNPLPPD-KDFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTV 59

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK---------------------------------- 114
            GF VLG + +    P VVTF +LI                                   
Sbjct: 60  FGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTII 119

Query: 115 --VCK----PDAITY-----------------NTIIDGLCKQGFVDKAKELFLKMKDKNV 151
             +CK      AI+Y                 +TI+D LCK G +  A   F  M  K +
Sbjct: 120 NGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGI 179

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P++V Y S+I G C    WNEA  L   MM +G+ PNV TFNV++D  CK GK+  A +
Sbjct: 180 QPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKT 239

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  M+  GV PD  TYN+++ G CL  ++N A ++F  M   G
Sbjct: 240 IMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKG 283



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 117/216 (54%), Gaps = 14/216 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ ++  L K+      L+ F  +   G+ PDL  ++ LI+  C  GR +    +LG +
Sbjct: 150 AYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNM 209

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +R    P+V TF              N ++D  CK+G + +AK +   M    V+P+VVT
Sbjct: 210 MRKGIMPNVQTF--------------NVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVT 255

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y SVI G C  +  N+A ++F  M+ +G+ PNVVT++ ++   CK   +++A  +LD M+
Sbjct: 256 YNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMV 315

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +G+  D  T++TL+ GFC  GR   A ELF +M  
Sbjct: 316 NNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHE 351



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M+R     P V +FN+++    K        ++   +   G+ PD+ T++ 
Sbjct: 200 NEATTLLGNMMR-KGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNS 258

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           +I+  C + +++    V   ++     P+VVT++SLI   CK                  
Sbjct: 259 VISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNG 318

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D +T++T+I G CK G  + A ELF  M + +  PN+ T   ++ G       +EA 
Sbjct: 319 LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAI 378

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M    ++ N+VT+N+++D +C  GK ++A  L   +   G++ D   Y T++ G 
Sbjct: 379 SLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGL 438

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G ++ A++L + ME  GC
Sbjct: 439 CKEGLLDDAEDLLMKMEENGC 459



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 136/269 (50%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG I+      A  I  +M+ +   P  V+  +++ G    ++  D V  +F+ +   GL
Sbjct: 231 EGKIS-----RAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAV-KVFELMIHKGL 284

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAI-- 121
            P++ T+S LI+ +CK   ++    VL  ++ +    DVVT+++LI    K  +P+A   
Sbjct: 285 LPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIE 344

Query: 122 ---------------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                          T   I+DGL K  F  +A  LF KM+  N++ N+VTY  V+ G C
Sbjct: 345 LFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMC 404

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
               +N+A+ LF  +  +G+Q +VV +  ++  LCK G +D+A  LL  M ++G  P+ F
Sbjct: 405 SFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEF 464

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYN L+ G      ++ + +  + M+  G
Sbjct: 465 TYNVLVRGLLQRYDISRSTKYLMLMKGKG 493



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 125/255 (49%), Gaps = 23/255 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F+ M+     P  V+  +++ G   K ++ +  + +   + + GL  D+ T S 
Sbjct: 270 NDAVKVFELMIHKGLLPNVVTYSSLIHG-WCKTRNINKAIFVLDEMVNNGLNLDVVTWST 328

Query: 77  LINCFCKMGRVSHGF-------------------VVLGRILRSCFTPDVVT-FTSLIKV- 115
           LI  FCK GR                        ++L  + +  F  + ++ F  + K+ 
Sbjct: 329 LIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMN 388

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + + +TYN ++DG+C  G  + A+ELF  +  K ++ +VV YT++I+G C     ++A+
Sbjct: 389 LELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAE 448

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L ++M + G  PN  T+NV++  L +   +  ++  L LM   G+  DA T   L+  F
Sbjct: 449 DLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTTELLISYF 508

Query: 236 CLTGRVNHAKELFVS 250
               + N A ++F+ 
Sbjct: 509 S-ANKENSALQVFLQ 522


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M R +   P V +F  ++  L K         + + +      P++ T+S 
Sbjct: 318 DEACKLFEKM-RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 376

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  CK G+V     V  R++     P+VVT+ SLI                       
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 436

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD ITYNT+IDGLCK G   +A  LF  MK K   P+V+TY+ +I GFC     + A+
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 496

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M+ Q V P+VVTF+ +++  C  G +D+A  LL+ M+     PD +TY +L+DGF
Sbjct: 497 TLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 556

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  GR+  A+ +   M   GC
Sbjct: 557 CKVGRMVEARRVLKRMAKRGC 577



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++         D+ L L + + +TG  PD+ T++ LI+  CK GR      +
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
            G +      PDV+T++ LI   CK                    PD +T++T+++G C 
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A+ L  +M   +  P+V TYTS++ GFC      EA+R+   M  +G QPNVVT
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVT 583

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  C+ GK   A  LL+ M+ +GV+P+  TY +L+ GFC TG +  A+++   +E
Sbjct: 584 YTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLE 643



 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 134/244 (54%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    +    DT   LF+++   G  P+L T++ L++  C+ G +   + +
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 94  LGRILRSCFTPDVVTFTSL-------------IKV--------CKPDAITYNTIIDGLCK 132
           L  +      PD  ++ +L             +KV        C PD + Y+T+I GLCK
Sbjct: 254 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A +LF KM++ + +P+VVT+T+++ G C  +   EA+++   M D+   PNV+T
Sbjct: 314 AGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 373

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK G++ +A  +   MI  G+ P+  TYN+L+ GFC+T  V+ A  L   M 
Sbjct: 374 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT 433

Query: 253 SMGC 256
           + GC
Sbjct: 434 ATGC 437



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K         LF  + +    PD+ T+S LI  FCK+ R+     +
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L+    PDVVTF++L++                      C PD  TY +++DG CK
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+ +  +M  +  +PNVVTYT++I  FC A     A RL  EM+  GVQPNV+T
Sbjct: 559 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVIT 618

Query: 193 FNVIMDELCKNGKMDEASSLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  ++   C  G ++EA  +L+ L      + D F Y  ++DG C TGR++ A EL  ++
Sbjct: 619 YRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 678

Query: 252 ESMG 255
           +  G
Sbjct: 679 KQSG 682



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 18/233 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-- 91
           P V ++ +++  L K+   D    L + +  +G  PD   ++ +I+  CK    +     
Sbjct: 57  PNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 92  --------------VVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGF 135
                         +++  + ++   P+  T+ + +K     P+  TYN +I+G CK   
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A  L  +MK+  + PNVVTY++VI GFC     + A +LF +M++ G  PN+VT+N 
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT 236

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++  LC+NG MDEA  LLD M + G++PD F+Y+TL+ G C TG+++ A ++F
Sbjct: 237 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 116/219 (52%), Gaps = 14/219 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +++ ++  L K    D    LF+++      PD+ T + L++  CK  R+     
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 357

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           VL  +     TP+V+T++SL              IDGLCK G V  A+E+F +M  + ++
Sbjct: 358 VLETMEDRNCTPNVITYSSL--------------IDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTY S+I GFC  N  + A  L  EM   G  P+++T+N ++D LCK G+  EA+ L
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              M      PD  TY+ L+ GFC   R++ A+ LF  M
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K         +FKR+   G+ P++ T++ LI+ FC    V    ++
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +  +   PD++T+ +LI                     K C PD ITY+ +I G CK
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 488

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A+ LF  M  + V P+VVT+++++ G+C A   ++A+RL  EM+     P+V T
Sbjct: 489 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYT 548

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  CK G+M EA  +L  M + G +P+  TY  L+D FC  G+   A  L   M 
Sbjct: 549 YTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMV 608

Query: 253 SMG 255
             G
Sbjct: 609 GNG 611



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 23/207 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K         + KR+   G  P++ T++ LI+ FC+ G+ +  + +
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRL 603

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           L  ++ +   P+V+T+ SLI                      + CK D   Y  ++DGLC
Sbjct: 604 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLC 663

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNV 190
           + G +  A EL   +K     P    Y ++IRG C   +  +A  +  EM + +  +PN 
Sbjct: 664 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNA 723

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMI 217
             +  ++ EL + G+ +EA++L D ++
Sbjct: 724 EAYEAVIQELAREGRHEEANALADELL 750



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 32/166 (19%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN + + L +   +D+   +        + PNV TY  VI+G C + D ++A  L  EM
Sbjct: 26  TYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEM 85

Query: 182 MDQGVQP--------------------------------NVVTFNVIMDELCKNGKMDEA 209
            + G  P                                NV+T+ +++D LCK  ++ EA
Sbjct: 86  RESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEA 145

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    M + G  P+ +TYN L++GFC   +V+ A  L   M+  G
Sbjct: 146 TTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 191



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%)

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K +    NV TY  +      A   +E   +       G+ PNV T+ V++  LCK+G +
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           D+A  LL+ M + G  PDA  YN ++   C       A + F SME
Sbjct: 76  DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME 121



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 169 NDWNEAKRLF-IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +D + A R F      QG   NV T+N + + L +  ++DE   +L      G+ P+ FT
Sbjct: 2   SDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFT 61

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y  ++ G C +G ++ A EL   M   G
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRESG 89


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++  L         L L  R+   G  P L T + L+N  C  G+VS   ++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           + R++ + F P+ VT+  ++KV CK                     DA+ Y+ IIDGLCK
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  LF +M+ K  K +++ YT++IRGFCYA  W++  +L  +M+ + + P+VV 
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+ ++D   K GK+ EA  L   MIQ G+ PD  TY +L+DGFC   +++ A  +   M 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 253 SMGC 256
           S GC
Sbjct: 380 SKGC 383



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 139/255 (54%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M R  P P  +  F+ +   +A+ K YD VL L K
Sbjct: 42  ERLRSG----IVDIKEDDAVDLFQEMTRSRPRPRLID-FSRLFSVVARTKQYDLVLDLCK 96

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
           ++   G+  +LYT SI+INC C+  ++S  F  +G+I++  + PD VTF+          
Sbjct: 97  QMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFS---------- 146

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+I+GLC +G V +A EL  +M +   KP ++T  +++ G C     ++A  L   
Sbjct: 147 ----TLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDR 202

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QPN VT+  ++  +CK+G+   A  LL  M +  ++ DA  Y+ ++DG C  G 
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 241 VNHAKELFVSMESMG 255
           +++A  LF  ME  G
Sbjct: 263 LDNAFNLFNEMEIKG 277



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 21/235 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++  L K+   D   +LF  +   G   D+  ++ LI  FC  GR   G  +L  ++
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           +   TPDVV F++LI                     +   PD +TY ++IDG CK+  +D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  +   M  K   PN+ T+  +I G+C AN  ++   LF +M  +GV  + VT+N ++
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C+ GK++ A  L   M+   VRPD  +Y  LLDG C  G    A E+F  +E
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%)

Query: 51  HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110
            +D    L + +    + PD+   S LI+CF K G++     +   +++   +PD VT+T
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356

Query: 111 SLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
           SLI                     K C P+  T+N +I+G CK   +D   ELF KM  +
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            V  + VTY ++I+GFC       AK LF EM+ + V+P++V++ +++D LC NG+ ++A
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + + + +  +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++ C  K         L K +   G+ PD  T++ LI+ FCK  ++     +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  ++     P++ TF  LI   CK                     D +TYNT+I G C+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AKELF +M  + V+P++V+Y  ++ G C   +  +A  +F ++    ++ ++  
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  +C   K+D+A  L   +   GV+PD  TYN ++ G C  G ++ A  LF  ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 253 SMG 255
             G
Sbjct: 555 EDG 557



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI++    K    D  L LF++++  G+  D  T++ LI  FC++G++      
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE----- 439

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +  F   V       +  +PD ++Y  ++DGLC  G  +KA E+F K++   ++ 
Sbjct: 440 ---VAKELFQEMVS------RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y  +I G C A+  ++A  LF  +  +GV+P+V T+N+++  LCK G + EA  L 
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G  P+  TYN L+      G    + +L   ++  G
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 11/248 (4%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL IF+ + +       +  +NI++  +      D    LF  L   G+ PD+ T++
Sbjct: 473 PEKALEIFEKIEK-SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYN 531

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--VCKPDAITYNTIIDGLCKQ 133
           I+I   CK G +S   ++  ++     +P+  T+  LI+  + + DA     +I+ + + 
Sbjct: 532 IMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRC 591

Query: 134 GFVDKAKEL------FLKMKDKNVKPNVVTYTSVIRGFCYANDWN--EAKRLFIEMMDQG 185
           GF   A  L        +M     +P+V T+T+++R FC   + +  +A  LF  M   G
Sbjct: 592 GFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMG 651

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +PNVVT+N ++  L     + +   +LD M + G +P+A T +T + G C       A 
Sbjct: 652 YKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAI 711

Query: 246 ELFVSMES 253
            L   ME+
Sbjct: 712 LLLRKMEN 719



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 38/247 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+ I+L  L  N   +  L +F+++  + +  D+  ++I+I+  C   +V   + +
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 514

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                  C  P        +K  KPD  TYN +I GLCK+G + +A  LF KM++    P
Sbjct: 515 F------CSLP--------LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSP 560

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIE----------------------MMDQGVQPNVV 191
           N  TY  +IR      D  ++ +L  E                      M+  G +P+V 
Sbjct: 561 NGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVF 620

Query: 192 TFNVIMDELC--KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           TF  ++   C  +N  + +A +L   M   G +P+  TYNT++ G      ++    +  
Sbjct: 621 TFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLD 680

Query: 250 SMESMGC 256
            M   GC
Sbjct: 681 QMFERGC 687



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 23/119 (19%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFC--KMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
            LS   R+   G  PD++T + L+  FC  +   V     +   +    + P+VVT+ ++
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           IK                      C+P+A+T +T I GLCKQ     A  L  KM++ N
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDN 721


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++  L         L L  R+   G  P L T + L+N  C  G+VS   ++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           + R++ + F P+ VT+  ++KV CK                     DA+ Y+ IIDGLCK
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  LF +M+ K  K +++ YT++IRGFCYA  W++  +L  +M+ + + P+VV 
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+ ++D   K GK+ EA  L   MIQ G+ PD  TY +L+DGFC   +++ A  +   M 
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 253 SMGC 256
           S GC
Sbjct: 380 SKGC 383



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 139/255 (54%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     I  I  ++A+ +F  M R  P P  +  F+ +   +A+ K YD VL L K
Sbjct: 42  ERLRSG----IVDIKEDDAVDLFQEMTRSRPRPRLID-FSRLFSVVARTKQYDLVLDLCK 96

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
           ++   G+  +LYT SI+INC C+  ++S  F  +G+I++  + PD VTF+          
Sbjct: 97  QMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFS---------- 146

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+I+GLC +G V +A EL  +M +   KP ++T  +++ G C     ++A  L   
Sbjct: 147 ----TLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDR 202

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QPN VT+  ++  +CK+G+   A  LL  M +  ++ DA  Y+ ++DG C  G 
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 241 VNHAKELFVSMESMG 255
           +++A  LF  ME  G
Sbjct: 263 LDNAFNLFNEMEIKG 277



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 21/235 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++  L K+   D   +LF  +   G   D+  ++ LI  FC  GR   G  +L  ++
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           +   TPDVV F++LI                     +   PD +TY ++IDG CK+  +D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  +   M  K   PN+ T+  +I G+C AN  ++   LF +M  +GV  + VT+N ++
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C+ GK++ A  L   M+   VRPD  +Y  LLDG C  G    A E+F  +E
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%)

Query: 51  HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110
            +D    L + +    + PD+   S LI+CF K G++     +   +++   +PD VT+T
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356

Query: 111 SLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
           SLI                     K C P+  T+N +I+G CK   +D   ELF KM  +
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            V  + VTY ++I+GFC       AK LF EM+ + V+P++V++ +++D LC NG+ ++A
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + + + +  +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++ C  K         L K +   G+ PD  T++ LI+ FCK  ++     +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  ++     P++ TF  LI   CK                     D +TYNT+I G C+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AKELF +M  + V+P++V+Y  ++ G C   +  +A  +F ++    ++ ++  
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  +C   K+D+A  L   +   GV+PD  TYN ++ G C  G ++ A  LF  ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 253 SMG 255
             G
Sbjct: 555 EDG 557



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI++    K    D  L LF++++  G+  D  T++ LI  FC++G++      
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE----- 439

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +  F   V       +  +PD ++Y  ++DGLC  G  +KA E+F K++   ++ 
Sbjct: 440 ---VAKELFQEMVS------RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y  +I G C A+  ++A  LF  +  +GV+P+V T+N+++  LCK G + EA  L 
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G  P+  TYN L+      G    + +L   ++  G
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 17/183 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+ I+L  L  N   +  L +F+++  + +  D+  ++I+I+  C   +V   + +
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 514

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                  C  P        +K  KPD  TYN +I GLCK+G + +A  LF KM++    P
Sbjct: 515 F------CSLP--------LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSP 560

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY  +IR      D  ++ +L  E+   G   +  T  +++D L  +G++ +  S L
Sbjct: 561 NGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML-SDGRLKK--SFL 617

Query: 214 DLM 216
           D++
Sbjct: 618 DML 620


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++G   K+   D  L + +R++   + PD+ T++ ++   C  G++     V
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 94  LGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           L R L R C+ PDV+T+T LI                     K CKPD +TYN +I+G+C
Sbjct: 231 LDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A +    M     KPNV+T+  ++R  C    W +A+RL  +M+ +G  P+VV
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN++++ LC+   +  A  +L+ M +HG  P++ +YN LL GFC   +++ A E    M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 252 ESMGC 256
            S GC
Sbjct: 410 VSRGC 414



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           NI L  L +N   +  L   +R+   G  PD+   + LI  FC+ G+      ++  +  
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 100 SCFTPDVVTFTSLI-KVCK-----------------PDAITYNTIIDGLCKQGFVDKAKE 141
           S   PDV+T+  LI   CK                 PD +TYNTI+  LC  G + +A E
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAME 229

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +  +   +   P+V+TYT +I   C  +   +A +L  EM  +G +P+VVT+NV+++ +C
Sbjct: 230 VLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA   L+ M  +G +P+  T+N +L   C TGR   A+ L   M   GC
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGC 344



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P V ++N+++  + K    D  +     + S G  P++ TH+I+
Sbjct: 261 QAMKLLDEM-RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNII 319

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C  GR      +L  +LR              K C P  +T+N +I+ LC++  + 
Sbjct: 320 LRSMCSTGRWMDAERLLSDMLR--------------KGCSPSVVTFNILINFLCRKRLLG 365

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  KM      PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++
Sbjct: 366 RAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL 425

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK+GK+D A  +L+ +   G  P   TYNT++DG    G+  +A EL   M   G
Sbjct: 426 TALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 14/206 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   S+N +L    + K  D  +   + + S G +PD+ T++ L+   CK G+V  
Sbjct: 377 HGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDA 436

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++                K C P  ITYNT+IDGL K G  + A EL  +M+ K
Sbjct: 437 AVEILNQLSS--------------KGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRK 482

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KP+++TY++++RG       +EA ++F +M    ++P+ VT+N IM  LCK  +   A
Sbjct: 483 GLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRA 542

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGF 235
              L  M++ G +P   TY  L++G 
Sbjct: 543 IDFLAYMVEKGCKPTEATYTILIEGI 568



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 24/206 (11%)

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
           +  +I +    + G +  G   L R++     PDV+  TSLI+  C+             
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI 166

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD ITYN +I G CK G +DKA E+  +M   +V P+VVTY +++R  C +  
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGK 223

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA  +    + +   P+V+T+ ++++  C +  + +A  LLD M + G +PD  TYN 
Sbjct: 224 LKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 283

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           L++G C  GR++ A +   +M S GC
Sbjct: 284 LINGICKEGRLDEAIKFLNNMPSYGC 309



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L  +      + +  R      +PD+ T++ILI   C    V     +
Sbjct: 206 PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  + +    PDVVT+  LI                       CKP+ IT+N I+  +C 
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCS 325

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A+ L   M  K   P+VVT+  +I   C       A  +  +M   G  PN ++
Sbjct: 326 TGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLS 385

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C+  KMD A   L++M+  G  PD  TYNTLL   C  G+V+ A E+   + 
Sbjct: 386 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 253 SMGC 256
           S GC
Sbjct: 446 SKGC 449



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR   SP  V +FNI++  L + +     + + +++   G  P+  +++ L++ FC+  
Sbjct: 339 MLRKGCSPS-VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEK 397

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++      L  I+ S             + C PD +TYNT++  LCK G VD A E+  +
Sbjct: 398 KMDRAIEYL-EIMVS-------------RGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           +  K   P ++TY +VI G         A  L  EM  +G++P+++T++ ++  L + GK
Sbjct: 444 LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +DEA  +   M    ++P A TYN ++ G C   + + A +    M   GC
Sbjct: 504 VDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGC 554


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 138/264 (52%), Gaps = 25/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  +LR     P V ++NI++  L K    +    LF  L   GL PD  T+++
Sbjct: 275 SEALKLFGSVLR-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+  CK GRV    ++L  +      PDVV+  ++I                     K 
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN--- 172
           C P+AI++NT+I G C+ G   KA   F +M  + VKP VVTY  ++ G C A       
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  LF  M+++G  P+VVT++ ++D L K GK+D+A  LL  M   G  P+ +TYN+L+
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C   +V+ A ELFV+M   GC
Sbjct: 514 SGLCGLDKVDEALELFVAMVEKGC 537



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 138/262 (52%), Gaps = 26/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL IFD  ++     P V ++N ++    K    D    + +R+ S  L PD+ T++ 
Sbjct: 137 DEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNS 195

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+N  CK GRV    ++   I+   F+P+V+T+++LI                       
Sbjct: 196 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKPD ++YN +I GL ++  V +A +LF  +  +  +P V TY  +I G    +  NEA
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEA 312

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  ++  G++P+ +T+ V +D LCK G++++A  +L  M + G  PD  ++N +++G
Sbjct: 313 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 372

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C   RV+ A+ L   ME+ GC
Sbjct: 373 LCKEKRVDEAEVLLSGMEAKGC 394



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 129/262 (49%), Gaps = 54/262 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  LA+ +     L LF  +   G  P++ T++ILI+   K  RV+  F +
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL 315

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCKQG------------------ 134
                          F+ L+K   +PDAITY   IDGLCK G                  
Sbjct: 316 ---------------FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV 360

Query: 135 -----------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                             VD+A+ L   M+ K   PN +++ ++I G C A  W +A   
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 420

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           F EM+ +GV+P VVT+N+++D LCK    G++ EA +L D MI+ G  PD  TY+ L+DG
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
               G+++ A+ L  +ME+ GC
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGC 502



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 127/256 (49%), Gaps = 25/256 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  +++ H   P   ++ + +  L K    +  L + K ++  G  PD+ +H+ 
Sbjct: 310 NEAFELFSGLVK-HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNA 368

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +IN  CK  RV    V+L  +     +P+ ++F +LI                     + 
Sbjct: 369 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 116 CKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            KP  +TYN ++DGLCK   +G + +A  LF  M +K   P+VVTY+++I G   A   +
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 488

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+RL   M  +G  PNV T+N ++  LC   K+DEA  L   M++ G  PD  TY T++
Sbjct: 489 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTII 548

Query: 233 DGFCLTGRVNHAKELF 248
              C    V+ A  LF
Sbjct: 549 SALCKQEMVDKALALF 564



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S N ++  L K K  D    L   + + G  P+  + + LI   C+ G+       
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 420

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK-----------------------PDAITYNTIIDG 129
              +L+    P VVT+  L+  +CK                       PD +TY+ +IDG
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K G +D A+ L   M+ K   PNV TY S+I G C  +  +EA  LF+ M+++G  P+
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            +T+  I+  LCK   +D+A +L D  ++ GV P +  Y +L+DG C   RV+ A +L 
Sbjct: 541 TITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 17/228 (7%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++D ++R++   P   +  I+L  L K+   +      ++L   GL  D+ T +I I+  
Sbjct: 4   VYDKLVRIYS--PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGL 60

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C+  R+     V   + +  F P+               ITYN ++ GLC  G +  A+ 
Sbjct: 61  CRASRIGDAQTVFDGMRKHGFWPN--------------RITYNALLSGLCNGGRMSDAQA 106

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L+ +M      P+VVTY +++ GFC     +EA ++F   + +G  P+VVT+N +++  C
Sbjct: 107 LYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFC 166

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           K  K+DEA  +L  M+   + PD  TYN+L++G C  GRV+ A+ L V
Sbjct: 167 KADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV 214



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 19/187 (10%)

Query: 69  PDLYTHSILINCFCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI 126
           PD YT  IL+    K G++  +H FV    +   C                 D  T+N  
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-----------------DISTFNIY 56

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I GLC+   +  A+ +F  M+     PN +TY +++ G C     ++A+ L+  M+  G 
Sbjct: 57  ISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY 116

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+VVT+N ++   CK GK+DEA  + D  ++ G  PD  TYN L++GFC   +++ A+ 
Sbjct: 117 SPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQR 176

Query: 247 LFVSMES 253
           +   M S
Sbjct: 177 ILQRMVS 183



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 36/148 (24%)

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            +  L+++  PDA T   ++  L K G ++KA     ++              +++G C 
Sbjct: 4   VYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQL--------------LVKGLC- 48

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                                ++ TFN+ +  LC+  ++ +A ++ D M +HG  P+  T
Sbjct: 49  ---------------------DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRIT 87

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN LL G C  GR++ A+ L+  M   G
Sbjct: 88  YNALLSGLCNGGRMSDAQALYERMIKAG 115


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 28/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTG 66
           EGD+     + AL I + M+    S   VS  N+++    K    +  L+  + + N  G
Sbjct: 237 EGDL-----DGALRIREQMVEFGCSWSNVS-VNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------- 113
            FPD YT + L+N  CK G V H   ++  +L+  + PDV T+ S+I             
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 114 --------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                   + C P+ +TYNT+I  LCK+  V++A EL   +  K + P+V T+ S+I+G 
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C   +   A  LF EM  +G +P+  T+N+++D LC  GK+DEA ++L  M   G     
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYNTL+DGFC   +   A+E+F  ME  G
Sbjct: 471 ITYNTLIDGFCKANKTREAEEIFDEMEVHG 500



 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 24/260 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ I D ML+     P V ++N ++  L K       + +  ++ +    P+  T++ LI
Sbjct: 314 AIEIMDVMLQ-EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372

Query: 79  NCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI---------------------KVC 116
           +  CK  +V      L R+L S    PDV TF SLI                     K C
Sbjct: 373 STLCKENQVEEA-TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  TYN +ID LC +G +D+A  +  +M+      +V+TY ++I GFC AN   EA+ 
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM   GV  N VT+N ++D LCK+ ++++A+ L+D MI  G +PD +TYN+LL  FC
Sbjct: 492 IFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A ++  +M S GC
Sbjct: 552 RGGDIKKAADIVQAMTSNGC 571



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L   +++   + LF+ + S G  PD +T+++LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++  S               C    ITYNT+IDG CK     +A+E+F +M+   V  
Sbjct: 458 LKQMELSG--------------CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY ++I G C +    +A +L  +M+ +G +P+  T+N ++   C+ G + +A+ ++
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M  +G  PD  TY TL+ G C  GRV  A +L  S++  G
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 34/251 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF------------ 81
           P VS+FN+++  L +       + + + + S GL PD  T + ++  +            
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 82  --------CKMGRVS-----HGFVVLGRILRSCFTPDVVTFTSLIKVCK---PDAITYNT 125
                   C    VS     HGF   GR+       D + F   +       PD  T+NT
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRV------EDALNFIQEMSNQDGFFPDQYTFNT 300

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +++GLCK G V  A E+   M  +   P+V TY SVI G C   +  EA  +  +M+ + 
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             PN VT+N ++  LCK  +++EA+ L  ++   G+ PD  T+N+L+ G CLT     A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 246 ELFVSMESMGC 256
           ELF  M S GC
Sbjct: 421 ELFEEMRSKGC 431



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 23/243 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F+ M R     P   ++N+++  L      D  L++ K++  +G    + T++ LI
Sbjct: 419 AMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           + FCK  +      +   +     + + VT+ +LI  +CK                    
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TYN+++   C+ G + KA ++   M     +P++VTY ++I G C A     A +L
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFC 236
              +  +G+      +N ++  L +  K  EA +L   M+ Q+   PDA +Y  +  G C
Sbjct: 598 LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657

Query: 237 LTG 239
             G
Sbjct: 658 NGG 660



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD   YN +++ L     +   +    KM    +KP+V T+  +I+  C A+    A  
Sbjct: 151 KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M   G+ P+  TF  +M    + G +D A  + + M++ G      + N ++ GFC
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 271 KEGRVEDA 278



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEA 174
           C+    T+  +I+   +    D+   +   M D+  +KP+   Y  ++      N     
Sbjct: 114 CEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLV 173

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +    +M   G++P+V TFNV++  LC+  ++  A  +L+ M  +G+ PD  T+ T++ G
Sbjct: 174 EISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQG 233

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +   G ++ A  +   M   GC
Sbjct: 234 YIEEGDLDGALRIREQMVEFGC 255


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K++ +     + + + ++G+ PD +T+S LI+  CK  ++     +
Sbjct: 160 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM 219

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L R+  S  TPDVV ++S+I   CK                    PD +TYNT+IDGLCK
Sbjct: 220 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279

Query: 133 QGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G + +A+ +  +M++  +V P+VVTY++VI G C ++   EA++L   M   G  P+VV
Sbjct: 280 LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 339

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  I+D LCK G+++EA  LL  M + G  P+  TY TL+ G C   +V+ A+ +   M
Sbjct: 340 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399

Query: 252 ESMGC 256
            + GC
Sbjct: 400 RNAGC 404



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V ++  ++   A+ K  +  + L + +   G  P+L T+++L++  CK+  
Sbjct: 48  LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 107

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     V+ +++   F P+V+TF SL+                     K  +P+ +TY+ 
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA 167

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGLCK     +AKE+  +MK   V P+  TY+++I G C A+   EA+++   M   G
Sbjct: 168 LIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 227

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+VV ++ I+   CK+GK+ EA   L  M +    PD  TYNT++DG C  G++  A+
Sbjct: 228 CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 287

Query: 246 ELFVSMESMG 255
            +   M+  G
Sbjct: 288 VILDQMQESG 297



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 22/241 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L K    +    + +R+  +G  PD+  +S +I+ FCK G++      
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 254

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L  + +   +PDVVT+ ++I  +CK                     PD +TY+T+I+GLC
Sbjct: 255 LQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLC 314

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   + +A++L  +M      P+VVTYT++I G C      EA+ L   M   G  PNVV
Sbjct: 315 KSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV 374

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++  LCK  K+DEA  +++ M   G  P+  TYNT+++G C++GR+  A++L   M
Sbjct: 375 TYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 434

Query: 252 E 252
           +
Sbjct: 435 K 435



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 26/233 (11%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           C A + H    L L + + S G  PD +TH+ +I      G +      L  +   C  P
Sbjct: 1   CNAGDLH--AALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--GC-DP 55

Query: 105 DVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +VVT+T+LI                       C P+ +TYN ++D LCK   V  A+++ 
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            KM +    PNV+T+ S++ GFC   + ++A++L   M+ +G++PNVVT++ ++D LCK+
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K  EA  +L+ M   GV PDAFTY+ L+ G C   ++  A+++   M   GC
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGC 228



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 17/228 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMG 85
           +R     P V ++N ++  L K         +  ++  +G + PD+ T+S +IN  CK  
Sbjct: 258 MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSD 317

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +     +L R+ ++   PDVVT+T              TIIDGLCK G +++A+ L   
Sbjct: 318 MLVEAQKLLDRMCKAGCNPDVVTYT--------------TIIDGLCKCGRLEEAEYLLQG 363

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MK     PNVVTYT++I G C A   +EA+R+  EM + G  PN+VT+N +++ LC +G+
Sbjct: 364 MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 423

Query: 206 MDEASSLLDLMIQHGVR--PDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + EA  L+  M        PDA TY T+++    +  V  A++L   M
Sbjct: 424 IKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I D M       P V +++ ++  L K+        L  R+   G  PD+ T++ +
Sbjct: 285 EAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+     +L  + R+   P+VVT+T              T+I GLCK   VD
Sbjct: 345 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYT--------------TLISGLCKARKVD 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNV 195
           +A+ +  +M++    PN+VTY +++ G C +    EA++L   M D   +  P+  T+  
Sbjct: 391 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRT 450

Query: 196 IMDELCKNGKMDEASSLLDLM 216
           I++ L  +  + EA  LL+ M
Sbjct: 451 IVNALMSSDLVQEAEQLLEQM 471


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  ML    +P  V+ +N+++  +      D  L LFK + S G  P  +T +I
Sbjct: 202 NEAYKLFQRMLDSGITPSAVT-YNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNI 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G++   F +L R+      PDVVT+++LI                     + 
Sbjct: 261 LIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 320

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKP  +T NT+I GLCK G + +A+E+   M      P+VVTY +++ G C A     A+
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+ +G+ PNVVT+  ++  LCK  ++ EA  +   M   G  P+ FTY  L+ GF
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGF 440

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+V+   +LF  M   G
Sbjct: 441 CSAGQVDGGLKLFGEMVCAG 460



 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +F+ M R+  +P   S   I+LG L +    D    +F  + +  + PD +++ I
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILG-LCQQSKIDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+   K G+++  + +  R+L S  TP  VT+  +I                     K 
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P   T+N +ID  CK+G +D+A  L  +M D    P+VVTY+++I G C     ++A+
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+ +  +P VVT N ++  LCK G++ EA  +LD M+  G  PD  TYNTL+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+   A+EL   M + G
Sbjct: 371 CRAGQTERARELLSDMVARG 390



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M R    P PV+ +N+M+    K    +    L K++   G  PD+ T++ 
Sbjct: 62  DDARELFADMNRRGCPPSPVT-YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK--------- 117
           +++  CK  RV    ++   + R   TP+  +  ++I          + C+         
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD+ +Y  +IDGL K G +++A +LF +M D  + P+ VTY  VI G C A   +EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M  +G +P+  TFN+++D  CK GK+DEA  LL  M   G  PD  TY+TL+ G 
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   RV+ A+ L   M    C
Sbjct: 301 CSIARVDDARHLLEDMVKRQC 321



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 123/255 (48%), Gaps = 22/255 (8%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL +F  M R     P   +FNI++    K    D    L KR+   G  PD+ T+
Sbjct: 235 TLDEALELFKSM-RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTY 293

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------- 117
           S LI+  C + RV     +L  +++    P VVT  +LI  +CK                
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD +TYNT++ G C+ G  ++A+EL   M  + + PNVVTYT+++ G C AN   E
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F +M   G  PN+ T+  ++   C  G++D    L   M+  G+ PD   Y TL  
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 234 GFCLTGRVNHAKELF 248
             C +GR   A E+ 
Sbjct: 474 ELCKSGRSARALEIL 488



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 134/261 (51%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A  +F  +L    +P  V+  +++ G C+A +  +D    LF  +N  G  P   T++
Sbjct: 27  NDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYN 84

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           ++I+  CK G +     ++ +++     PDVVT+ +++                      
Sbjct: 85  VMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERL 144

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C P+  ++NTII GLC+Q  +D+A ++F +M+ K++ P+  +Y  +I G   A   NEA
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEA 204

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +LF  M+D G+ P+ VT+NV++  +C    +DEA  L   M   G RP  FT+N L+D 
Sbjct: 205 YKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  G+++ A  L   M   G
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDG 285



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 89/139 (64%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD+ +Y  +IDGL K G ++ A+ LF K+    V P+ V YTS+I G C AN +++A+ L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  +G  P+ VT+NV++D  CK G ++EA  L+  MI+ G  PD  TYNT++DG C 
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 238 TGRVNHAKELFVSMESMGC 256
           + RV  A  LF  ME +GC
Sbjct: 128 SSRVEEALLLFNEMERLGC 146



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+ I++  LAK    +   +LF++L  +G+ P    ++ LI+  C          +
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              + R    P  VT+  +I   CK                    PD +TYNT++DGLCK
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V++A  LF +M+     PN  ++ ++I G C  +  ++A ++F EM  + + P+  +
Sbjct: 128 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D L K GK++EA  L   M+  G+ P A TYN ++ G CL   ++ A ELF SM 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 253 SMGC 256
           S GC
Sbjct: 248 SKGC 251



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 21/215 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------- 113
           +N   + PD +++ ILI+   K G+++    +  ++L S  TP  V +TSLI        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 114 -------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        + C P  +TYN +ID  CK+G +++A +L  KM +    P+VVTY +
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           V+ G C ++   EA  LF EM   G  PN  + N I+  LC+  K+D+A  +   M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + PD+++Y  L+DG    G++N A +LF  M   G
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSG 215



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M ++ V P+  ++ +++D L K GK+++A +L   ++  GV P    Y +L+ G C+   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 241 VNHAKELFVSMESMGC 256
            + A+ELF  M   GC
Sbjct: 61  FDDARELFADMNRRGC 76



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 23/173 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         +F ++ S+G  P+L+T++ LI  FC  G+V  G  +
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKPDAIT----------------------YNTIIDGL 130
            G ++ +  +PD V + +L  ++CK                           Y   +DGL
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGL 512

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
            + G ++ A      M      P      S++ G C +    EA+ +  E+MD
Sbjct: 513 LEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 123/233 (52%), Gaps = 17/233 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N  L  L +N   D + ++F+R+   G  PD YT+ ++I   C+M ++   F +L +   
Sbjct: 129 NCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKV 188

Query: 100 SCFTPDVVTFTSLIKV-CK----------------PDAITYNTIIDGLCKQGFVDKAKEL 142
             F P+V  +T L +  CK                PDAI YN II G C++   D A E 
Sbjct: 189 RGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEF 248

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +M ++ V P+V TY  +I G C A+  ++A  +  EM+D+GV P+ VTFN IMD LCK
Sbjct: 249 LKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCK 308

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GK + A SLL +M +   RP   TYNTL+ G C    V+ AK+L     S G
Sbjct: 309 AGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSG 361



 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 26/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL IF    R  PSP  ++   I+ G   KN   D  L   K +N   + PD++T++I
Sbjct: 212 KDALEIF----RNIPSPDAIAYNAIIHGHCRKN-DCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK  +      +L  ++    TPD VTF S++                     + 
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P   TYNT+I GLCKQ  VD+AK+L  +       P+VVTY+ +  G C     +EA 
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAF 386

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM  +G  PN+VT+N ++D LCK  K ++A  LL+ ++  G  PD  TY  ++DG 
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  GR++ A ++   M   GC
Sbjct: 447 CKEGRLDKALKMVEGMLKRGC 467



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 26/256 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ ML    +P   + +++++  L +    D   ++  +    G  P++  ++IL   F
Sbjct: 147 MFERMLDAGYAPDSYT-YHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK GR+         I R+  +PD + + ++I                     +   PD 
Sbjct: 206 CKTGRLKDAL----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDV 261

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYN +IDGLCK    DKA E+  +M D+ V P+ VT+ S++ G C A  +  A  L   
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAV 321

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M ++  +P+  T+N ++  LCK   +D A  L+D  +  G  PD  TY+ L DG C  GR
Sbjct: 322 MAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGR 381

Query: 241 VNHAKELFVSMESMGC 256
           ++ A EL   M   GC
Sbjct: 382 IDEAFELVKEMSGKGC 397



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 131/276 (47%), Gaps = 53/276 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L K ++ D    L     S+G  PD+ T+SIL +  CK GR+   F +
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +     TP++VT+ +LI  +CK                    PD +TY  I+DGLCK
Sbjct: 389 VKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-------- 184
           +G +DKA ++   M  +   P+V+TYT+++ G C     +EA  +F EM+ +        
Sbjct: 449 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 508

Query: 185 ----------------------GVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
                                 G++  P +  +N +MD  CK G++DE  ++ + M   G
Sbjct: 509 YVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 568

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             P+  TYN ++DG C  G+V+ A     SM S GC
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL + + ML+   +P  ++   +M G L +    D    +FK + S     D   +  
Sbjct: 453 DKALKMVEGMLKRGCTPSVITYTALMEG-LCRTGRVDEAHHIFKEMVSKDCTADALAYVS 511

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+N +CK  R      V+  I     TP +  + +L+                     + 
Sbjct: 512 LVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 568

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN ++DGLCK G VD+A      M      P+VV+Y  +I G   A+   EA+
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 628

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++  +M+  G+ P+ VT+N +M + CK  + D+A  +L  MI+ GV PD  TYNTL+ G 
Sbjct: 629 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGL 688

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             T R+  A EL   M   GC
Sbjct: 689 SQTNRLGDAYELMHEMLRNGC 709



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 50/257 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++    K    D + ++F+ +   G  P++ T++I+++  CK G+V   F  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  +               C PD ++YN IIDGL K     +A+++  +M    + P
Sbjct: 596 LESMHSAG--------------CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 641

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV---------------------- 191
           + VTY +++  FC    +++A  +   M+  GV P+ V                      
Sbjct: 642 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 701

Query: 192 --------------TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
                         T+N I+D LCK G + +A  L+D M  HGV  +  TYN  +D  C 
Sbjct: 702 HEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 761

Query: 238 TGRVNHAKELFVSMESM 254
            GR++ A  L   M+++
Sbjct: 762 EGRLDEASSLLSEMDTL 778



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 62/299 (20%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA  + D M++    PP   ++N ++    K + +D  + + K +   G+ PD  T++
Sbjct: 624 PKEARQVLDQMIQAG-IPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYN 682

Query: 76  ILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI-KVCK---------------- 117
            LI+   +  R+   + ++  +LR+ C      T+ ++I ++CK                
Sbjct: 683 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 742

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                + +TYN  ID LCK+G +D+A  L  +M   +   + V+YT+VI G C A   + 
Sbjct: 743 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDR 799

Query: 174 AKRLFIEMM------------------------------------DQGVQPNVVTFNVIM 197
           A +L  EM+                                     +G  P+V+T+N+++
Sbjct: 800 ASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVI 859

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             LCK  K+D+A  L D M   G+   + +Y  L+ G C  GR   A ++   M S  C
Sbjct: 860 TCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 918



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 31/170 (18%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K    T N  +  L + G  D+   +F +M D    P+  TY  VI+  C  N  ++A  
Sbjct: 122 KHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFT 181

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKM------------------------------ 206
           +  +   +G +P V  + ++    CK G++                              
Sbjct: 182 MLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKND 241

Query: 207 -DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D A   L  M +  V PD FTYN L+DG C   + + A E+   M   G
Sbjct: 242 CDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRG 291



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 55/112 (49%)

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
            F+   D+  K +  T    ++        +    +F  M+D G  P+  T+++++  LC
Sbjct: 112 FFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLC 171

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +  ++D+A ++LD     G +P+   Y  L   FC TGR+  A E+F ++ S
Sbjct: 172 QMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 95/347 (27%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L  +G   ++ +  ++A+ +F  M++  P P  +  F+ +L  +AK   +D V+SL +
Sbjct: 50  EKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGE 105

Query: 61  RLNSTGLFPDLYTHSILINCFC----------------KMG------------------- 85
           ++ + G+  + YT+SILINCFC                K+G                   
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITY- 123
           R+S    ++ ++  + + P+ VTF +LI                     K C+PD +TY 
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225

Query: 124 ----------------------------------NTIIDGLCKQGFVDKAKELFLKMKDK 149
                                             NTIIDGLCK   +D A  LF +M+ K
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            ++PNVVTY+S+I   C    W++A RL  +M+++ + P+V TF+ ++D   K GK+ EA
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L D M++  + P   TY++L++GFC+  R++ AK++F  M S  C
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--- 90
           P V  +N ++  L K KH D  L+LFK + + G+ P++ T+S LI+C C  GR S     
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 91  ----------------------FVVLGRIL----------RSCFTPDVVTFTSLI----- 113
                                 FV  G+++          +    P +VT++SLI     
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           K C PD +TYNT+I G CK   V++  E+F +M  + +  N VT
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I+G   A D + A+ +F EM+  GV PN++T+N ++D LCKNGK+++A  + + + 
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + P  +TYN +++G C  G+V    +LF ++   G
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FPD+ T++ L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I  FCK  RV  G  V   + +     + VT+  LI+                       
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYNT++DGLCK G ++KA  +F  ++   ++P + TY  +I G C A    +   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+P+VV +N ++   C+ G  +EA +L   M + G  P++  YNTL+    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 583 RDGDREASAELIKEMRSCG 601



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 18/201 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NI++  L +    D    +FK + S G+ P++ T++ L++  CK G++    VV   +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P + T              YN +I+G+CK G V+   +LF  +  K VKP+VV 
Sbjct: 493 QRSKMEPTIYT--------------YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I GFC      EA  LF EM + G  PN   +N ++    ++G  + ++ L+  M 
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598

Query: 218 QHGVRPDAFTY----NTLLDG 234
             G   DA T     N L DG
Sbjct: 599 SCGFAGDASTIGLVTNMLHDG 619


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 136/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+M+    K    +  LS+  R++ +   PD+ T++ ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 94  LGRIL-RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           L R+L R C+ PDV+T+T LI+                      C PD +TYN +++G+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A +    M     +PNV+T+  ++R  C    W +A++L  +M+ +G  P+VV
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN++++ LC+ G +  A  +L+ M +HG +P++ +YN LL GFC   +++ A E    M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 252 ESMGC 256
            S GC
Sbjct: 406 VSRGC 410



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            A+ I + M + H   P   S+N +L    K K  D  +   +R+ S G +PD+ T++ +
Sbjct: 362 RAIDILEKMPK-HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   CK G+V     +L ++                K C P  ITYNT+IDGL K G   
Sbjct: 421 LTALCKDGKVEDAVEILNQLSS--------------KGCSPVLITYNTVIDGLAKAGKTG 466

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +L  +M+ K++KP+ +TY+S++ G       +EA + F E    GV+PN VTFN IM
Sbjct: 467 KAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIM 526

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             LCK  + D A   L  MI  G +P   +Y  L++G    G    A EL 
Sbjct: 527 LGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 15/236 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P V ++N+++  + K    D  +     + S+G  P++ TH+I+
Sbjct: 257 QAMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C  GR      +L  +LR  F+P VVTF              N +I+ LC++G + 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF--------------NILINFLCRKGLLG 361

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  KM     +PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++
Sbjct: 362 RAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             LCK+GK+++A  +L+ +   G  P   TYNT++DG    G+   A +L   M +
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + NI+L  +     +     L   +   G  P + T +ILIN  C+ G +     +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++ +    P+ +++  L+                     + C PD +TYNT++  LCK
Sbjct: 367 LEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+ A E+  ++  K   P ++TY +VI G   A    +A +L  EM  + ++P+ +T
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  L + GK+DEA        + GVRP+A T+N+++ G C T + + A +  V M 
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMI 546

Query: 253 SMGC 256
           + GC
Sbjct: 547 NRGC 550



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 25/221 (11%)

Query: 44  GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL--------INCFCKMGRVSHGFVVLG 95
           G   + + +DT+ S     N  G F    +  +L        +    + G +  GF  L 
Sbjct: 67  GLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLE 126

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++     PD++  T+LI+              G C+ G   KA ++   ++     P+V
Sbjct: 127 NMVYHGNVPDIIPCTTLIR--------------GFCRMGKTRKAAKILEVLEGSGAVPDV 172

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY  +I G+C A + N A  +   M    V P+VVT+N I+  LC +GK+ +A  +LD 
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+Q    PD  TY  L++  C    V  A +L   M   GC
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGC 270


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 68/294 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK---HYDTVLSLFKRLN---STGLFPD 70
           N+AL +FD ML  H  P  V +FN +L  +++ +     + V+SLF R+    S  + P 
Sbjct: 33  NDALKLFDEML-THARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCF---------------------------- 102
            +T++ILI CFC+MGR+ HGF   G IL++ +                            
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDIL 151

Query: 103 ---------TPDVVTFTSLIK-VCK-----------------------PDAITYNTIIDG 129
                    TPDV +++ L+K  C                        P+ +TY T+IDG
Sbjct: 152 LRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDG 211

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK   VD+AK +F  M DK V+PN  TYT +I G+     W E  ++  EM   G+QP+
Sbjct: 212 LCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPD 271

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
              + V++D LCKNG+  EA ++ D +I+ G++P+   Y  LL G+   G ++ 
Sbjct: 272 CYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSE 325



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD ++R     P V+ + I+L   A       + S    +   G+ PD +  +I+
Sbjct: 290 EARNIFDSVIR-KGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIM 348

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
              + K   +     +  ++ +   +P++VT              Y  +ID LCK G VD
Sbjct: 349 FCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT--------------YGALIDALCKLGRVD 394

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P++  ++S++ G C  + W +A+ LF E++DQG++ + V FN +M
Sbjct: 395 DAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLM 454

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC+ G++ EA  L+DLM++ GVRPD  +YNTL+DG CLTGR++ A +L   + S+G
Sbjct: 455 CNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNIM    AK    D  + +F ++    L P++ T+  LI+  CK+GRV    + 
Sbjct: 340 PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLK 399

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++    TPD+  F+SL+                     +  + D + +NT++  LC+
Sbjct: 400 FNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCR 459

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +A+ L   M    V+P+V++Y +++ G C     +EA +L   ++  G++P+ VT
Sbjct: 460 EGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVT 519

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N ++   CK  ++D+A SL   M+  G+ PD  TYNT+L G   TGR + AKEL++SM
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSM 578



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ IFD M R     P + ++  ++  L K    D  +  F ++   G+ PD++  S 
Sbjct: 359 DEAMHIFDKM-RQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSS 417

Query: 77  LINCFC-----------------------------------KMGRVSHGFVVLGRILRSC 101
           L+   C                                   + GRV     ++  +LR  
Sbjct: 418 LVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVG 477

Query: 102 FTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAK 140
             PDV+++ +L+                        KPD +TYNT++ G CK   +D A 
Sbjct: 478 VRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAY 537

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K + P+VVTY +++ G      ++EAK L++ M++   Q N+ T+N+I++ L
Sbjct: 538 SLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGL 597

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CKN  +DEA  +   +    ++ D FT N ++      GR   A +LF ++ + G
Sbjct: 598 CKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYG 652



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D MLR+   P  V S+N ++         D    L   + S GL PD  T++ L
Sbjct: 465 EAQRLIDLMLRVGVRPD-VISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTL 523

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +CK  R+   + +   +L    TPDVVT              YNTI+ GL + G   
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPDVVT--------------YNTILHGLFQTGRFS 569

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKEL+L M +   + N+ TY  +I G C  N  +EA ++F  +  + +Q ++ T N+++
Sbjct: 570 EAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMI 629

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K G+ ++A  L   +  +G+ PD  TY  + +     G +    ELF +ME  G
Sbjct: 630 GALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENG 687



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 122/294 (41%), Gaps = 62/294 (21%)

Query: 24  DYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSIL 77
           D +LR  P     P V S++I+L      K  +  L L   +   G     P++ T++ +
Sbjct: 149 DILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTV 208

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+  CK   V     V   ++     P+  T+T LI                        
Sbjct: 209 IDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGL 268

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG------------ 164
           +PD   Y  ++D LCK G   +A+ +F  +  K +KPNV  Y  ++ G            
Sbjct: 269 QPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS 328

Query: 165 --------------------FC-YANDW--NEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
                               FC YA     +EA  +F +M  Q + PN+VT+  ++D LC
Sbjct: 329 FLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALC 388

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G++D+A    + MI  G+ PD F +++L+ G C   +   A+ELF  +   G
Sbjct: 389 KLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQG 442



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 22/246 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   T   +EA  + D ++ +   P  V+ +N +L    K +  D   SLF+ +   GL
Sbjct: 490 DGHCLTGRIDEAAKLLDVIVSIGLKPDKVT-YNTLLHGYCKARRIDDAYSLFREMLMKGL 548

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP-------- 118
            PD+ T++ +++   + GR S    +   ++ S    ++ T+  +I  +CK         
Sbjct: 549 TPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFK 608

Query: 119 ------------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                       D  T N +I  L K G  + A +LF  +    + P+V TY  +     
Sbjct: 609 MFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLI 668

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 E   LF  M + G  PN    N ++  L   G ++ A + L  + +     +A 
Sbjct: 669 KEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEAS 728

Query: 227 TYNTLL 232
           T + L+
Sbjct: 729 TTSMLI 734


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  ML    +P  V+ +N+++  +      D  L LFK + S G  P  +T +I
Sbjct: 202 NEAYKLFRRMLDSGITPSAVT-YNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNI 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G++   F +L R+      PDVVT+++LI                     + 
Sbjct: 261 LIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 320

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKP  +T NT+I GLCK G + +A+E+   M      P+VVTY +++ G C A     A+
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+ +G+ PNVVT+  ++  LCK  ++ EA  +   M   G  P+ FTY  L+ GF
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGF 440

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+V+   +LF  M   G
Sbjct: 441 CSAGQVDGGLKLFGEMVCAG 460



 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +F+ M R+  +P   S   I+LG L +    D    +F  + +  + PD +++ I
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILG-LCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+   K G+++  + +  R+L S  TP  VT+  +I                     K 
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P   T+N +ID  CK+G +D+A  L  +M D    P+VVTY+++I G C     ++A+
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+ +  +P VVT N ++  LCK G++ EA  +LD M+  G  PD  TYNTL+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G+   A+EL   M + G
Sbjct: 371 CRAGQTERARELLSDMVARG 390



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M R    P PV+ +N+++    K    +    L K++   G  PD+ T++ 
Sbjct: 62  DDARELFADMNRRGCPPSPVT-YNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK--------- 117
           +++  CK GRV    ++   + R   TP+  +  ++I          + C+         
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD+ +Y  +IDGL K G +++A +LF +M D  + P+ VTY  VI G C A   +EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M  +G +P+  TFN+++D  CK GKMDEA  LL  M   G  PD  TY+TL+ G 
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   RV+ A+ L   M    C
Sbjct: 301 CSIARVDDARHLLEDMVKRQC 321



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 123/255 (48%), Gaps = 22/255 (8%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T +EAL +F  M R     P   +FNI++    K    D    L KR+   G  PD+ T+
Sbjct: 235 TLDEALELFKSM-RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTY 293

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------- 117
           S LI+  C + RV     +L  +++    P VVT  +LI  +CK                
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD +TYNT++ G C+ G  ++A+EL   M  + + PNVVTYT+++ G C AN   E
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F +M   G  PN+ T+  ++   C  G++D    L   M+  G+ PD   Y TL  
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAA 473

Query: 234 GFCLTGRVNHAKELF 248
             C +GR   A E+ 
Sbjct: 474 ELCKSGRSARALEIL 488



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 91/139 (65%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD+ +Y  +IDGL K G ++ A++LF K+    V P+ V YTS+I G C AN +++A+ L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  +G  P+ VT+NVI+D  CK G ++EA  L+  MI+ G  PD  TYNT++DG C 
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 238 TGRVNHAKELFVSMESMGC 256
           +GRV  A  LF  ME +GC
Sbjct: 128 SGRVEEALLLFNEMERLGC 146



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 134/261 (51%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A  +F  +L    +P  V+  +++ G C+A +  +D    LF  +N  G  P   T++
Sbjct: 27  NDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYN 84

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           ++I+  CK G +     ++ +++     PDVVT+ +++                      
Sbjct: 85  VIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERL 144

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C P+  ++NTII GLC+Q  +D+A ++F +M+ +++ P+  +Y  +I G   A   NEA
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEA 204

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +LF  M+D G+ P+ VT+NV++  +C    +DEA  L   M   G RP  FT+N L+D 
Sbjct: 205 YKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  G+++ A  L   M   G
Sbjct: 265 HCKRGKMDEAFRLLKRMTDDG 285



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+ I++  LAK    +    LF++L  +G+ P    ++ LI+  C          +
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              + R    P  VT+  +I   CK                    PD +TYNT++DGLCK
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V++A  LF +M+     PN  ++ ++I G C  +  ++A ++F EM  + + P+  +
Sbjct: 128 SGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D L K GK++EA  L   M+  G+ P A TYN ++ G CL   ++ A ELF SM 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 253 SMGC 256
           S GC
Sbjct: 248 SKGC 251



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------- 113
           +N   + PD +++ ILI+   K G+++    +  ++L S  TP  V +TSLI        
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 114 -------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        + C P  +TYN IID  CK+G +++A +L  KM +    P+VVTY +
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           V+ G C +    EA  LF EM   G  PN  + N I+  LC+  K+D+A  +   M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + PD+++Y  L+DG    G++N A +LF  M   G
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSG 215



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         +F ++ S+G  P+L+T++ LI  FC  G+V  G  +
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--KNV 151
            G ++ +  +PD V               Y T+   LCK G   +A E+  + ++  ++ 
Sbjct: 453 FGEMVCAGISPDHVV--------------YGTLAAELCKSGRSARALEILREGRESLRSE 498

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
                 Y   + G   A     A     +M+  G  P       ++  LCK+G+  EA +
Sbjct: 499 AWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARA 558

Query: 212 LLD 214
           +L+
Sbjct: 559 VLE 561



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M ++ V P+  ++ +++D L K GK+++A  L   ++  GV P    Y +L+ G C+   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 241 VNHAKELFVSMESMGC 256
            + A+ELF  M   GC
Sbjct: 61  FDDARELFADMNRRGC 76


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 57/286 (19%)

Query: 26  MLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           ML  H +P P +  F  +LG L K  HY  V+SL +++   GL  +L T SILINC+ ++
Sbjct: 1   MLLHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQL 60

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------------ 114
           G+ +  F V   IL+  +  D +TFT+LIK                              
Sbjct: 61  GQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSY 120

Query: 115 ------VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
                 +CK                    PD + YNTIIDGLCK   V+ A  L+ +M  
Sbjct: 121 GTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVA 180

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           K + P+VVTY ++I G C      +A  L  +M+ + + P V TF++++D  CK GKM E
Sbjct: 181 KRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKE 240

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           A ++  +M++  V+P+  TYN+L+DG  L   V  AK +F +M  M
Sbjct: 241 AKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKM 286



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 35/258 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L         + L  ++    + P +YT SILI+ FCK G++     V
Sbjct: 185 PSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNV 244

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------------------------KVCKP 118
              +++    P++VT+ SL+                                   K   P
Sbjct: 245 FAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYP 304

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D + YN++IDGLCK G    A +   +M  +   P++ TY S++   C     ++A  L 
Sbjct: 305 DMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELL 364

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            ++ DQG+QP+V T+N++++ LCK+G++ +A  + + ++  G   D +TYN ++ GFC  
Sbjct: 365 TKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKK 424

Query: 239 GRVNHAKELFVSMESMGC 256
           G  +    +   M+  GC
Sbjct: 425 GLFDETLAMVSKMKDSGC 442



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 20/189 (10%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S FN M+      K  D  ++LF+ ++   ++PD+  ++ LI+  CK GR  +    +G 
Sbjct: 278 SIFNTMI------KMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGE 331

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +      PD+               TYN+++D LCK   VDKA EL  K+KD+ ++P+V 
Sbjct: 332 MHYRGQPPDI--------------FTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVC 377

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY  +I G C +    +A+++F +++ +G   +V T+N ++   CK G  DE  +++  M
Sbjct: 378 TYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKM 437

Query: 217 IQHGVRPDA 225
              G  PDA
Sbjct: 438 KDSGCSPDA 446



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 15/154 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            PP + ++N +L  L KN H D  + L  +L   G+ P + T++ILIN  CK GR+    
Sbjct: 337 QPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAE 396

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            V   +L   +  DV               TYN +I G CK+G  D+   +  KMKD   
Sbjct: 397 KVFEDLLVKGYNTDVY--------------TYNAMIKGFCKKGLFDETLAMVSKMKDSGC 442

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
            P+      +IR      + ++A + F EM+ +G
Sbjct: 443 SPDAKNCEIIIRSLFDKGENDKAGK-FREMIVRG 475


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 58/292 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+R  P P  V SF+ +L  L   KHY +V+SLF+ ++   +    +  SI
Sbjct: 54  DDAFSLFRQMVRTKPLPS-VVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 77  LINCFCKMGRVSHGFVVLG---------------RILRSCFTPDVVT-----FTSLIK-- 114
           ++N  C M R   GF VL                 +LR  F  + V      F  L++  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 115 VCKPDAITYNTIIDGLCKQG-----------------------------------FVDKA 139
           +C+P+ + Y T+++GLCK+G                                    +D A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGA 232

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +MK K++ P++ TY+++I   C  + W   + LF+EM+   + PNV TFN ++D 
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDG 292

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LCK GK+++A  ++  MI+ GV PD  TYN ++DG+ L G+V+ A+E+F SM
Sbjct: 293 LCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  ++R +   P    +  ++  L K  H      L + +      P+   +SI+
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIV 219

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ FCK G +     +L  + +    PD+ T+++LI  +CK                   
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T+N++IDGLCK+G V+ A+E+   M +K V P+V+TY  +I G+      + A+ 
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+++ ++PN++++N++++   +  K+DEA  +   + Q G++P   T N LL G  
Sbjct: 340 IFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A+  F  M S G
Sbjct: 400 ELGRTKSAQNFFDEMLSAG 418



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 21/248 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ++    + P    ++I++    K+   D   SL   +    + PD++T+S LI+  CK+ 
Sbjct: 203 LMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
           +  +   +   ++     P+V TF S+I  +CK                    PD ITYN
Sbjct: 263 QWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            IIDG   +G VD+A+E+F  M +K+++PN+++Y  +I G+      +EA ++  E+  +
Sbjct: 323 MIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQK 382

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G++P++VT NV++  L + G+   A +  D M+  G  PD +T+ TLL G+   G V  A
Sbjct: 383 GLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEA 442

Query: 245 KELFVSME 252
              F  +E
Sbjct: 443 MSHFHKLE 450



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 15/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  IFD M+      P + S+NI++   A+ K  D  + + + ++  GL P + T ++
Sbjct: 335 DRAREIFDSMIN-KSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   ++GR          +L +   PD+ T              + T++ G  K G V
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYT--------------HCTLLGGYFKNGLV 439

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F K++ +    N+  YT+VI G C     ++A   F ++   G+ P+V+T+  +
Sbjct: 440 EEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAM 499

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +   C+ G +DEA  +L  M  +G   D  TYN ++ GF  + +V+  K
Sbjct: 500 ISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMK 548



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 21/191 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N++L  L +     +  + F  + S G  PDLYTH  L+  + K G V      
Sbjct: 386 PSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSH 445

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++ R     ++  +T++I  +CK                    PD ITY  +I G C+
Sbjct: 446 FHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ 505

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+AK++  KM+D     +  TY  ++RGF  +N  +E K    E+  +       T
Sbjct: 506 EGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAAT 565

Query: 193 FNVIMDELCKN 203
             ++MD + ++
Sbjct: 566 VELLMDIIAED 576


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 135/255 (52%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     +  I  ++A+ +F  MLR  P  P V  FN + G LA+ K YD VL+L K
Sbjct: 60  ERLRSG----LVDIKKDDAVALFQSMLRSRP-LPTVIDFNRLFGLLARTKQYDLVLALCK 114

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
           ++   G+  DLYT +I+INCFC+  ++   F  +G+I +  + P+ VTF           
Sbjct: 115 QMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTF----------- 163

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
              NT+++GLC +G V +A EL   M      P+++T  +++ G C  +  +EA  L   
Sbjct: 164 ---NTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIAR 220

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           MM  G QPN  T+  I++ +CK+G    A  LL  M    ++P   TY  ++D  C  GR
Sbjct: 221 MMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR 280

Query: 241 VNHAKELFVSMESMG 255
           ++ A   F  ME+ G
Sbjct: 281 LDDALSFFSEMETKG 295



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + D M+     P  ++   I+ G   K++  + V  L  R+ + G  P+ +T+  +
Sbjct: 178 EAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAV-DLIARMMANGCQPNQFTYGPI 236

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N  CK G  +    +L ++                +  KP  +TY  IID LCK G +D
Sbjct: 237 LNRMCKSGNTASALDLLRKMEH--------------RKIKPHVVTYTIIIDNLCKDGRLD 282

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M+ K +K NV TY S+I  FC    W++  +L  +M+ + + PNVVTF+ ++
Sbjct: 283 DALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALI 342

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D L K GK+ EA  L + MI  G+ P+  TYN+L+ G C   R++ A ++   M S GC
Sbjct: 343 DSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGC 401



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 131/278 (47%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L K+   D  LS F  + + G+  +++T++ LI  FC  GR   G  +
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322

Query: 94  LGRILRSCFTPDVVT-----------------------------------FTSLI----- 113
           L  ++    TP+VVT                                   + SLI     
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           K C PD  TYN +I+G CK   VD    LF KM  + +  + VT
Sbjct: 383 DKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVT 442

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I+GFC +     AK++F EM+ QGV P ++T+ +++D LC NG+++EA  +LD M 
Sbjct: 443 YSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMH 502

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  +  D   YN ++ G C   +V+ A  LF S+ S G
Sbjct: 503 KCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKG 540



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 130/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG +T     EA  +++ M+     P  ++ +N ++  L  +K  D    +   + S G 
Sbjct: 348 EGKLT-----EAKDLYNEMITRGIEPNTIT-YNSLIYGLCNDKRLDEANQMMDLMVSKGC 401

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            PD++T++ILIN FCK  +V  G  +  ++       D VT+++LI+  C+         
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKK 461

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P  +TY  ++DGLC  G +++A  +  +M    ++ ++  Y  +I G C
Sbjct: 462 VFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMC 521

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            AN  ++A  LF  +  +GV+ ++ ++N+++  LCK   + EA +L   M + G  PD  
Sbjct: 522 NANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGC 581

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNTL+        +  + +L   M+  G
Sbjct: 582 TYNTLIRAHLRGNDITTSVQLIEEMKRCG 610



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 21/221 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++    K K  D  + LF++++  G+  D  T+S LI  FC+  ++     V
Sbjct: 403 PDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKV 462

Query: 94  LGRILRSCFTPDVVTFTSLIK-------------------VCKP--DAITYNTIIDGLCK 132
              ++     P ++T+  L+                     CK   D   YN II G+C 
Sbjct: 463 FQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCN 522

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD A  LF  +  K VK ++ +Y  ++ G C  +  +EA  LF +M + G +P+  T
Sbjct: 523 ANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCT 582

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +N ++    +   +  +  L++ M + G   DA T   ++D
Sbjct: 583 YNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD 623



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 106 VVTFTSLIKVCK-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           V  F S+++    P  I +N +   L +    D    L  +M+ K +  ++ T   +I  
Sbjct: 75  VALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINC 134

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           FC       A     ++   G +PN VTFN +++ LC  G++ EA  L+D M+     PD
Sbjct: 135 FCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPD 194

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             T NT+++G CL  RV+ A +L   M + GC
Sbjct: 195 LITLNTIVNGLCLKDRVSEAVDLIARMMANGC 226



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 15/176 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I+L  L  N   +  L +  +++   +  D+  ++I+I+  C   +V   + +
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSL 532

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                  C  P         K  K D  +YN ++ GLCK+  + +A  LF KMK+   +P
Sbjct: 533 F------CSLPS--------KGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEP 578

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           +  TY ++IR     ND   + +L  EM   G   +  T  ++MD L  +G++D++
Sbjct: 579 DGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML-SSGELDKS 633


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K++ +     + + + + G+ PD +T+S LI+  CK  ++     +
Sbjct: 282 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQM 341

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L R+  S  TPDVV ++S+I   CK                    PD +TYNT+IDGLCK
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401

Query: 133 QGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G + +A+ +  +M++  +V P+VVTY++VI G C ++   EA++L   M   G  P+VV
Sbjct: 402 LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 461

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  I+D LCK G+++EA  LL  M + G  P+  TY TL+ G C   +V+ A+ +   M
Sbjct: 462 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 521

Query: 252 ESMGC 256
            + GC
Sbjct: 522 RNAGC 526



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V ++  ++   A+ K  +  + L + +   G  P+L T+++L++  CK+  
Sbjct: 170 LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 229

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     V+ +++   F P+V+TF SL+                     K  +P+ +TY+ 
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA 289

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGLCK     +AKE+  +MK + V P+  TY+++I G C A+   EA+++   M   G
Sbjct: 290 LIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 349

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+VV ++ I+   CK+GK+ EA   L  M +    PD  TYNT++DG C  G++  A+
Sbjct: 350 CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 409

Query: 246 ELFVSMESMG 255
            +   M+  G
Sbjct: 410 VILEQMQESG 419



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI++            L L + + S G  PD +TH+ +I      G +      
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +   C  P+VVT+T+LI                       C P+ +TYN ++D LCK
Sbjct: 170 LRSM--GC-DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V  A+++  KM +    PNV+T+ S++ GFC   + ++A++L   M+ +G++PNVVT
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK+ K  EA  +L+ M   GV PDAFTY+ L+ G C   ++  A+++   M 
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 253 SMGC 256
             GC
Sbjct: 347 GSGC 350



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 22/241 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L K    +    + +R+  +G  PD+  +S +I+ FCK G++      
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 376

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L  + +   +PDVVT+ ++I  +CK                     PD +TY+T+I+GLC
Sbjct: 377 LQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC 436

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   + +A++L  +M      P+VVTYT++I G C      EA+ L   M   G  PNVV
Sbjct: 437 KSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV 496

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++  LCK  K+DEA  +++ M   G  P+  TYNT+++G C++GR+  A++L   M
Sbjct: 497 TYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 556

Query: 252 E 252
           +
Sbjct: 557 K 557



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 17/230 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMG 85
           +R     P V ++N ++  L K         + +++  +G + PD+ T+S +IN  CK  
Sbjct: 380 MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSD 439

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +     +L R+ ++   PDVVT+T              TIIDGLCK G +++A+ L   
Sbjct: 440 MLVEAQKLLDRMCKAGCNPDVVTYT--------------TIIDGLCKCGRLEEAEYLLQG 485

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MK     PNVVTYT++I G C A   +EA+R+  EM + G  PN+VT+N +++ LC +G+
Sbjct: 486 MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 545

Query: 206 MDEASSLLDLMIQHGVR--PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + EA  L+  M        PDA TY T+++    +  V  A++L   M+S
Sbjct: 546 IKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 32/178 (17%)

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK----------------- 152
           + L+  C+PD  +YN +I G C  G +  A EL  +MK                      
Sbjct: 102 SELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG 161

Query: 153 ---------------PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
                          PNVVTYT++I  F  A    EA +L  EM ++G  PN+VT+NV++
Sbjct: 162 DLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLV 221

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK   +  A  ++  MI+ G  P+  T+N+L+DGFC  G V+ A++L   M + G
Sbjct: 222 DALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 279



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I + M       P V +++ ++  L K+        L  R+   G  PD+ T++ +
Sbjct: 407 EAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK GR+     +L  + R+   P+VVT+T              T+I GLCK   VD
Sbjct: 467 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYT--------------TLISGLCKARKVD 512

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNV 195
           +A+ +  +M++    PN+VTY +++ G C +    EA++L   M D   +  P+  T+  
Sbjct: 513 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRT 572

Query: 196 IMDELCKNGKMDEASSLLDLM 216
           I++ L  +  + EA  LL+ M
Sbjct: 573 IVNALMSSDLVQEAEQLLEQM 593



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A ++N+++  L +     +A +LF      + +P+V +Y  VI GFC A D + A  L  
Sbjct: 77  AFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLE 136

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM   G  P+  T   I+  +   G +D A   +D +   G  P+  TY  L+  F    
Sbjct: 137 EMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAK 193

Query: 240 RVNHAKELFVSMESMGC 256
           ++  A +L   M   GC
Sbjct: 194 KLEEAMKLLEEMRERGC 210



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G      ++N ++  L +  K  EA  L    +     PD  +YN ++ GFC  G ++ A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 245 KELFVSMESMG 255
            EL   M+S G
Sbjct: 132 LELLEEMKSAG 142


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN +L  L         L+LF ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA  L D M+  G+ P+  TY++++DGFC   R++ A+ +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 140/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G++ +    PDVVTF +L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L    +PDVVT              YN +I+   K+G   +A+EL+ +M  + + P
Sbjct: 313 LQEMLERKISPDVVT--------------YNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN ++D  C   ++D+   LL
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+  D  TYNTL+ GF L G +N A +L   M S G
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++      K  D  + L   +  TGL  D  T++ LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 CGFRKVGNINGALDIFQEMISSG 646



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 668 KRAVAMLE 675



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +LRS   P VV F  L+ V     +PD +                    L+ KM+ K ++
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVI------------------SLYQKMERKQIR 111

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            ++ ++T +I+ FC  +    A   F ++   G+ P+VVTFN ++  LC   ++ EA +L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M +   RP+  T+ TL++G C  GR+  A  L   M   G
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +F +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+NTLL G C+  RV+ A  LF  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN +L  L         L+LF ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA  L D M+  G+ P+  TY++++DGFC   R++ A+ +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 140/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G+I +    PDVVTF +L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 14/237 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             FC  GR S    +L  +L    +PDVVT              YN +I+   K+G   +
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVT--------------YNALINAFVKEGKFFE 343

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+EL+ +M  + + PN +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN ++D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C   ++D+   LL  M + G+  D  TYNTL+ GF L G +N A +L   M S G
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++      K  D  + L   +  TGL  D  T++ LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 CGFRKVGNINGALDIFQEMISSG 646



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 668 KRAVAMLE 675



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +LRS   P VV F  L+ V     +PD +                    L+ KM+ K ++
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVI------------------SLYQKMERKQIR 111

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            ++ ++T +I+ FC  +    A   F ++   G+ P+VVTFN ++  LC   ++ EA +L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M +   RP+  T+ TL++G C  GR+  A  L   M   G
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +F +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+NTLL G C+  RV+ A  LF  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 137/260 (52%), Gaps = 24/260 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I D ML+     P + ++N ++  L K    +  + +  ++      P+  T++ LI
Sbjct: 335 ALEILDVMLQ-EGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLI 393

Query: 79  NCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI---------------------KVC 116
           +  CK  +V      L R+L S    PDV TF SLI                     K C
Sbjct: 394 STLCKENQVEEA-TELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGC 452

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TYN +ID LC +G +++A  L  +M+      NVVTY ++I GFC      EA+ 
Sbjct: 453 HPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEE 512

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM  QG+  NVVT+N ++D LCKN +++EA+ L+D M+  G++PD FTYN+LL  FC
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFC 572

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A ++  +M S GC
Sbjct: 573 RAGDIKKAADIVQTMTSNGC 592



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L    ++   + LF+ + + G  PD +T+++LI+  C  GR+     +
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSL 478

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  S               C  + +TYNT+IDG CK   +++A+E+F +M+ + +  
Sbjct: 479 LKEMESSG--------------CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISR 524

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY ++I G C      EA +L  +M+ +G++P+  T+N ++   C+ G + +A+ ++
Sbjct: 525 NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIV 584

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M  +G  PD+ TY TL+ G    GRV  A  L  +++  G
Sbjct: 585 QTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKG 626



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 33/250 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P V++FNI++  L +       + + + + S GL PD  T + L+  F + G ++     
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268

Query: 89  --------------------HGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTI 126
                               HG+   GRI       +V++F   +  +  +PD  T+N++
Sbjct: 269 REQMVAAGCPSSNVTVNVLVHGYCKEGRI------EEVLSFIDEMSNEGFRPDRFTFNSL 322

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ++GLC+ G V  A E+   M  +   P++ TY S+I G C   +  EA  +  +M+ +  
Sbjct: 323 VNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF 382

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PN VT+N ++  LCK  +++EA+ L  ++   G+ PD  T+N+L+ G CLT     A E
Sbjct: 383 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAME 442

Query: 247 LFVSMESMGC 256
           LF  M++ GC
Sbjct: 443 LFEEMKTKGC 452



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++    KNK  +    +F  +   G+  ++ T++ LI+  CK  RV     ++ 
Sbjct: 491 VVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMD 550

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           ++L     PD  T+ SL+                       C+PD++TY T+I GL K G
Sbjct: 551 QMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAG 610

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V+ A  L   ++ K +     TY  VI+        +EA RLF EMM++G  P+ VT+ 
Sbjct: 611 RVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYK 670

Query: 195 VIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           V+   LC  G  + EA   L  M   G  PD  ++  L +G C
Sbjct: 671 VVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLC 713



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 15/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +F I++   AK + +D  +++   +    GL  D +T++ L+N      ++    +V  R
Sbjct: 142 TFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSR 201

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           ++     PDV TF              N +I  LC+   +  A  +  +M    + P+  
Sbjct: 202 MVSRGIKPDVTTF--------------NILIKALCRAHQIRPAILMMEEMGSYGLSPDEK 247

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           T+T++++GF    + N A R+  +M+  G   + VT NV++   CK G+++E  S +D M
Sbjct: 248 TFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEM 307

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              G RPD FT+N+L++G C  G V HA E+   M   G
Sbjct: 308 SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEG 346



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L      +  LSL K + S+G   ++ T++ LI+ FCK  R+     +
Sbjct: 454 PDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEI 513

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +     + +VVT+ +LI  +CK                    PD  TYN+++   C+
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA ++   M     +P+ VTY ++I G   A     A RL   +  +G+     T
Sbjct: 574 AGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQT 633

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR-VNHAKELFVSM 251
           +N ++  L +  +  EA  L   M++ G  PDA TY  +  G C  G  +  A +  V M
Sbjct: 634 YNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEM 693

Query: 252 ESMG 255
              G
Sbjct: 694 TDKG 697



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 35/262 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  IFD M  +      V ++N ++  L KN+  +    L  ++   GL PD +T++ 
Sbjct: 508 EEAEEIFDEM-ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNS 566

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
           L+  FC+ G +     ++  +  +   PD VT+ +LI                       
Sbjct: 567 LLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKG 626

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WN 172
            V  P   TYN +I  L ++    +A  LF +M +K   P+ VTY  V RG C       
Sbjct: 627 MVLAPQ--TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIG 684

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA------- 225
           EA    +EM D+G  P+  +F ++ + LC     D    L++ +++     D+       
Sbjct: 685 EAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSEVSMIMG 744

Query: 226 -FTYNTLLDGFCLTGRVNHAKE 246
                   D     GR+  ++E
Sbjct: 745 FLKIRKFQDALATLGRILSSRE 766



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEA 174
           C+    T+  +I+   K    D+A  +   M+++  +K +  TY  ++      N     
Sbjct: 136 CEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLV 195

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +   M+ +G++P+V TFN+++  LC+  ++  A  +++ M  +G+ PD  T+ TL+ G
Sbjct: 196 EIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQG 255

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           F   G +N A  +   M + GC
Sbjct: 256 FIEEGNMNGALRIREQMVAAGC 277



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF-LKMKDKNVKPNVVT 157
           +   +P   T +       P   T   + D L +Q   D   +L     K  N  P+ V 
Sbjct: 48  QQAVSPSFSTLSPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVI 107

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  V+R       +   +R+  EM   G +    TF ++++   K    DEA +++D+M 
Sbjct: 108 YEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIME 167

Query: 218 QH-GVRPDAFTYNTLLD 233
           +  G++ DAFTYN LL+
Sbjct: 168 EEFGLKLDAFTYNFLLN 184


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 134/239 (56%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F  ++     P  V+  +I+LG LA+  + D    +FK++ ++G  P+  T+SI
Sbjct: 236 DEAMKLFKDVIAKGYMPDTVTYNSILLG-LARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++  C+  +V     VL  + +    PDVVT              YN ++DGLCK   V
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVT--------------YNILLDGLCKTNLV 340

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA ELF  M D    P++V+Y+ V+ G C  N  ++A+ LF  M+++ + P+VVTFN++
Sbjct: 341 DKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNIL 400

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MD LCK GK+DEA  LLD M   G  PD   YNTL++G    GR   A  L  +M+  G
Sbjct: 401 MDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 23/257 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ ML    SP  +  +NI++   AK    D    L++ + S GL P +YT++ L+N F
Sbjct: 30  LFEQMLDNGISPDGIE-YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAF 88

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------KVCKPD 119
           CK  ++     +   +    F PDVVT++++I                      + C  +
Sbjct: 89  CKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSAN 148

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            + YN +I+GLCK   +++A +L  +M  K   P+ +TY +++ G C     +EAK+ F 
Sbjct: 149 TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFD 208

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M  +G  P+VV +N ++D L K GK DEA  L   +I  G  PD  TYN++L G     
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 268

Query: 240 RVNHAKELFVSMESMGC 256
            ++ A+E+F  M + GC
Sbjct: 269 NMDEAEEMFKKMVASGC 285



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 59/281 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L    K       + LFK +   G  PD+ T+S +I+  CK G+V+    +
Sbjct: 76  PSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEM 135

Query: 94  L--GRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
           L    I R C + + V + +LI  +CK                    PD ITYNTI+ GL
Sbjct: 136 LFHKMIERGC-SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGL 194

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVV---------------------------------- 156
           C+ G V +AK+ F  M  +   P+VV                                  
Sbjct: 195 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDT 254

Query: 157 -TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY S++ G    ++ +EA+ +F +M+  G  PN  T+++++   C+  K+D+A  +L+ 
Sbjct: 255 VTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEE 314

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M + G  PD  TYN LLDG C T  V+ A ELF +M   GC
Sbjct: 315 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 56/275 (20%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L K+++ +    L + + S G  PD  T++ +++  C+MG+VS        +
Sbjct: 151 AYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSM 210

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
               ++PDVV +  L+                     K   PD +TYN+I+ GL ++  +
Sbjct: 211 PSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 270

Query: 137 DKAKELFLKM--------------------KDKNVK---------------PNVVTYTSV 161
           D+A+E+F KM                    + K V                P+VVTY  +
Sbjct: 271 DEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNIL 330

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + G C  N  ++A  LF  M+D G  P++V+++V+++ LCK  K+ +A  L D MI+  +
Sbjct: 331 LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKL 390

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            PD  T+N L+DG C  G+++ AK+L   M   GC
Sbjct: 391 VPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 15/228 (6%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M    P   +F ++L    K         LF+++   G+ PD   ++ILI+ + K GRV 
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
               +   ++     P +               TYN++++  CK+  + +A ELF  M +
Sbjct: 61  EANRLYEEMVSVGLEPSI--------------YTYNSLLNAFCKETKMKEAMELFKTMAE 106

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEA-KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           K  +P+VVTY+++I G C      EA + LF +M+++G   N V +N +++ LCK+  ++
Sbjct: 107 KGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIE 166

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            A  LL+ M   G  PD  TYNT+L G C  G+V+ AK+ F SM S G
Sbjct: 167 RAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRG 214



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
           ++ C P+  T+  ++   CKQG +    +LF +M D  + P+ + Y  +I G+      +
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA RL+ EM+  G++P++ T+N +++  CK  KM EA  L   M + G  PD  TY+T++
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 233 DGFCLTGRVNHAKE-LFVSMESMGC 256
            G C TG+V  A E LF  M   GC
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIERGC 145


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN +L  L         L+LF ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA  L D M+  G+ P+  TY++++DGFC   R++ A+ +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 140/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G+I +    PDVVTF +L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L    +PDVVT              YN +I+   K+G   +A+EL+ +M  + + P
Sbjct: 313 LQEMLERKISPDVVT--------------YNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN ++D  C   ++D+   LL
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+  D  TYNTL+ GF L G +N A +L   M S G
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++      K  D  + L   +  TGL  D  T++ LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 CGFRKVGNINGALDIFQEMISSG 646



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 668 KRAVAMLE 675



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +LRS   P VV F  L+ V     +PD +                    L+ KM+ K ++
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVI------------------SLYQKMERKQIR 111

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            ++ ++T +I+ FC  +    A   F ++   G+ P+VVTFN ++  LC   ++ EA +L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M +   RP+  T+ TL++G C  GR+  A  L   M   G
Sbjct: 172 FHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +F +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+NTLL G C+  RV+ A  LF  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 16/224 (7%)

Query: 34  PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P + +FN +L G  +K K  D V  LF  +   G  PD+ T+S +IN  CKMG  +    
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAV-KLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L ++                K CKP+ + YNTIID LCK   V +A + F +M  + + 
Sbjct: 67  LLKKMEE--------------KGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIP 112

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+V TY+S++ GFC     NEA  LF +M+++ V PN VTF +++D LCK   + EA  +
Sbjct: 113 PDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLV 172

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + M + G+ PD +TYN L+DG+C   +++ A++LF  M+  GC
Sbjct: 173 FETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGC 216



 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 137/255 (53%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+  F  M++    PP V +++ +L         +   SLFK++    + P+  T +IL
Sbjct: 98  EAMDFFSEMVK-EGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTIL 156

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK   +S  ++V   +      PDV T+ +L+                     K C
Sbjct: 157 IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGC 216

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  +YN +I+G CK G +D+AK L  +M  K++ P++ TY++++RGFC      EA+ 
Sbjct: 217 APNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQE 276

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM   G+ PN++T+++++D LCK+G +DEA  LL  M +  + P+ F Y  L++G C
Sbjct: 277 LLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMC 336

Query: 237 LTGRVNHAKELFVSM 251
             G++  A+ELF ++
Sbjct: 337 TFGKLEAARELFSNL 351



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K++     +  F  +   G+ PD++T+S +++ FC +GRV+    +
Sbjct: 78  PNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSL 137

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++     P+ VTFT LI              DGLCK+  + +A  +F  M +K ++P
Sbjct: 138 FKQMVERNVIPNKVTFTILI--------------DGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY +++ G+C  +  +EA++LF  M  +G  PNV ++N++++  CK+G++DEA  LL
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M    + PD FTY+TL+ GFC  GR   A+EL   M S G
Sbjct: 244 AEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M       P V ++N ++         D    LF  ++  G  P++ +++I
Sbjct: 167 SEAWLVFETMTE-KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNI 225

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN  CK GR+     +L  +     TPD+ T+++L++  C+                  
Sbjct: 226 LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ ITY+ ++DGLCK G +D+A EL   M++  ++PN+  YT +I G C       A+
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAR 345

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +  +G+QP VVT+ V++  L K G  +EA  L   M  +G  P++ TYN ++ GF
Sbjct: 346 ELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGF 405

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G   +A  L   M   G
Sbjct: 406 LRNGDTPNAVRLIEEMVGKG 425



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  M+  +  P  V+ F I++  L K +       +F+ +   GL PD+YT++ 
Sbjct: 132 NEATSLFKQMVERNVIPNKVT-FTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNA 190

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ +C   ++     +   + R    P+V ++  LI                     K 
Sbjct: 191 LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+T++ G C+ G   +A+EL  +M    + PN++TY+ V+ G C     +EA 
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAF 310

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M +  ++PN+  + ++++ +C  GK++ A  L   +   G++P   TY  ++ G 
Sbjct: 311 ELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G  N A ELF  M   GC
Sbjct: 371 LKGGLSNEACELFREMAVNGC 391



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 84/135 (62%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT++ GLC +  +  A +LF +M     +P+V+TY+++I G C   +   A +
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M ++G +PNVV +N I+D LCK+  + EA      M++ G+ PD FTY+++L GFC
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 237 LTGRVNHAKELFVSM 251
             GRVN A  LF  M
Sbjct: 127 NLGRVNEATSLFKQM 141



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M R     P V S+NI++    K+   D    L   ++   L PD++T+S 
Sbjct: 202 DEAQKLFNIMDR-KGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYST 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L+  FC++GR      +L  +      P+++T++ ++  +CK                  
Sbjct: 261 LMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK 320

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+   Y  +I+G+C  G ++ A+ELF  +  K ++P VVTYT +I G       NEA 
Sbjct: 321 IEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEAC 380

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF EM   G  PN  T+NVI+    +NG    A  L++ M+  G   D+ T+  L D
Sbjct: 381 ELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           ++P +VT+ +++ G C      +A +LF EM+  G +P+V+T++ I++ LCK G    A 
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  M + G +P+   YNT++D  C    V  A + F  M   G
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG 110



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G+QP +VTFN ++  LC   K+ +A  L D M++ G  PD  TY+T+++G C  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 241 VNHAKELFVSMESMGC 256
              A +L   ME  GC
Sbjct: 61  TTMALQLLKKMEEKGC 76


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 21/241 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P +  +N ++  + K+   D   SLF  +   GLFP+  T+SILI+ FCK G++     
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
            LG++        V  ++SLI                        KP+ + Y ++I G C
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +  A  L+ +M  K + PN  T+T++I G C+AN   EA +LF EM++  V PN V
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+NV+++  CK G    A  LLD M++ G+ PD +TY  L+ G C TGRV+ A+E    +
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 252 E 252
           +
Sbjct: 592 Q 592



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 117/246 (47%), Gaps = 24/246 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           PS   VS+   ++  L K  +  +   L  ++   G+ P L+ ++ LIN  CK G++   
Sbjct: 318 PSEAAVSN---LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 91  FVVLGRILRSCFTPDVVTFTSLI-KVCKPDAIT--------------------YNTIIDG 129
             +   +      P+ VT++ LI   CK   +                     Y+++I G
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            CK G +  AK LF +M    +KPNVV YTS+I G+C   + + A RL+ EM  +G+ PN
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
             TF  ++  LC   +M EA+ L   M++  V P+  TYN L++G C  G    A EL  
Sbjct: 495 TYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD 554

Query: 250 SMESMG 255
            M   G
Sbjct: 555 EMVEKG 560



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 22/247 (8%)

Query: 22  IFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           I D + +MH     P    +  M+   AK  +      L+  + S G  P++ T++ LIN
Sbjct: 654 IIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALIN 713

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA------------------- 120
             CK+G +    ++   +L S   P+  T+   +     +                    
Sbjct: 714 GLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLAN 773

Query: 121 -ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +TYN +I G CK G + +A E+ + M D  + P+ ++Y+++I  +C   D  EA +L+ 
Sbjct: 774 TVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWE 833

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+++GV P+ V +N ++   C  G++ +A  L D M++ GV+P+  TYN+L+ G CL  
Sbjct: 834 SMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMS 893

Query: 240 RVNHAKE 246
            V+   +
Sbjct: 894 SVSSTAD 900



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 22/238 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +++++  + + +   +++ L K+++  GL PD   ++ +I+   K G +   F +   ++
Sbjct: 638 YSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMV 697

Query: 99  RSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VVT+T+LI  +CK                    P+  TY   +D L  +G ++
Sbjct: 698 SEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIE 757

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +L   + +     N VTY  +IRGFC      EA  + + M+D G+ P+ ++++ I+
Sbjct: 758 KAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 816

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            E C+ G + EA  L + M+  GV PD   YN L+ G C+TG +  A EL   M   G
Sbjct: 817 YEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 874



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+ +  L KN+     + +   L+  GL  D+ T+  L+   CK+     G  ++ 
Sbjct: 250 VATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMN 309

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F P     ++L+              DGL K+G +  A +L  K+K   V P++
Sbjct: 310 EMIEFGFVPSEAAVSNLV--------------DGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y ++I   C     +EA+ LF  M  +G+ PN VT+++++D  CK GK+D A   L  
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G++   + Y++L+ G C  G++  AK LF  M + G
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + + +L  L + + +   L LF  + S+GL PD+Y ++ ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +GR+  S               C     TYN  I GLCK   V +A E+   +  K ++ 
Sbjct: 238 IGRMESSG--------------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY +++ G C   ++   + +  EM++ G  P+    + ++D L K G +  A  L+
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + + + GV P  F YN L++  C  G+++ A+ LF +M   G
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 56/256 (21%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-V 115
           SLF  + + GL P++  ++ LI+ +CK G + + F +   +     +P+  TFT+LI  +
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 116 CK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           C                     P+ +TYN +I+G CK+G   +A EL  +M +K + P+ 
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA------ 209
            TY  +I G C     +EA+    ++  +  + N + F+ ++   CK G++D+A      
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACRE 625

Query: 210 --------------------------SSLLDLMIQ---HGVRPDAFTYNTLLDGFCLTGR 240
                                      S++DL+ Q    G+RPD   Y T++D     G 
Sbjct: 626 MLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGN 685

Query: 241 VNHAKELFVSMESMGC 256
           +  A  L+  M S GC
Sbjct: 686 LKMAFGLWDIMVSEGC 701



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 15/234 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+  +  P  V+ +N+++    K  +      L   +   GL PD YT+  L
Sbjct: 513 EANKLFGEMVEWNVIPNEVT-YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  C  GRVS             F  D+          K + + ++ ++ G CK+G +D
Sbjct: 572 ISGLCSTGRVSEA---------REFMNDLQGEQQ-----KLNEMCFSALLHGYCKEGRLD 617

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A +   +M  + V  ++V Y+ +I G     D      L  +M DQG++P+ V +  ++
Sbjct: 618 DALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMI 677

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           D   K G +  A  L D+M+  G  P+  TY  L++G C  G ++ A+ L   M
Sbjct: 678 DANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREM 731



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 133 QGFVDKAKEL-----FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           Q +V   +EL        M D  + P + T + V+ G      +  A  LF E++  G++
Sbjct: 153 QTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLR 212

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+V  +  ++  LC+      A  ++  M   G      TYN  + G C   RV  A E+
Sbjct: 213 PDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEI 272



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           MMD G+ P + T + +++ L +  +   A  L D ++  G+RPD + Y  ++   C    
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 241 VNHAKELFVSMESMGC 256
              A+E+   MES GC
Sbjct: 231 FIRAREVIGRMESSGC 246



 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 35/150 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIML-GCLAKNKHYDTVLSLFKRLN------------ 63
           N   C  DY+         +   +++L G LA    Y+ ++  F +L             
Sbjct: 741 NTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNM 800

Query: 64  -STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------ 116
             +G+ PD  ++S +I  +C+ G +     +   +L     PD V +  LI  C      
Sbjct: 801 IDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGEL 860

Query: 117 ---------------KPDAITYNTIIDGLC 131
                          KP+  TYN++I G C
Sbjct: 861 TKAFELRDDMMRRGVKPNRATYNSLIHGTC 890


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 15/233 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG------RV 87
           PP+S F  +L  LA +  Y   LS  ++L+  G+ PDL+T+++LINCF ++G      RV
Sbjct: 61  PPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRV 120

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIK-----VCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           S+  ++ G     C   +      L+K     + + D + Y  II+GLCK   VD A +L
Sbjct: 121 SYETLINGL----CKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDL 176

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           + +M  K V P+V TY ++I GFC      +A  LF +M  + V+ +  TFN ++   CK
Sbjct: 177 YTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCK 236

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G + E  +++ +M++ GV+PD  TYN+L+DG+CL   V+ AK +F +M   G
Sbjct: 237 EGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRG 289



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 39/252 (15%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +  ++  L K+K  D    L+  + +  + PD++T++ +I  FC +GR+     +  
Sbjct: 154 VVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFN 213

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +       D  TF +L+                        KPD ITYN+++DG C   
Sbjct: 214 DMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVK 273

Query: 135 FVDKAKE------------------LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            VDKAK                   LF +M  K + P+ + Y+S+I GFC +    +A  
Sbjct: 274 EVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALE 333

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM D+G  PN++T+N I+  LCK   +++  +LL  +   G++PDA+TY  L +G  
Sbjct: 334 LVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLF 393

Query: 237 LTGRVNHAKELF 248
             GR+  A+E+F
Sbjct: 394 KDGRLEEAREIF 405



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           ++LF+ ++   + PD   +S LI+ FCK GR+     ++  +      P++         
Sbjct: 297 MNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNI--------- 347

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                ITYN+I+  LCK   V+K   L  K+K K ++P+  TYT +  G        EA+
Sbjct: 348 -----ITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAR 402

Query: 176 RLFIEM 181
            +F ++
Sbjct: 403 EIFPDL 408



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
            PP + ++N +L  L K  H +  ++L +++   G+ PD YT++IL N   K GR+   
Sbjct: 343 QPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEA 401



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++    K+      L L   ++  G  P++ T++ ++   CK+  V     +
Sbjct: 310 PDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIAL 369

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           L +I      PD  T+T L               +GL K G +++A+E+F
Sbjct: 370 LRKIKVKGIQPDAYTYTIL--------------TNGLFKDGRLEEAREIF 405


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 21/241 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P +  +N ++  + K+   D   SLF  +   GLFP+  T+SILI+ FCK G++     
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
            LG++        V  ++SLI                        KP+ + Y ++I G C
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +  A  L+ +M  K + PN  T+T++I G C+AN   EA +LF EM++  V PN V
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+NV+++  CK G    A  LLD M++ G+ PD +TY  L+ G C TGRV+ A+E    +
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 252 E 252
           +
Sbjct: 592 Q 592



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 117/246 (47%), Gaps = 24/246 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           PS   VS+   ++  L K  +  +   L  ++   G+ P L+ ++ LIN  CK G++   
Sbjct: 318 PSEAAVSN---LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 91  FVVLGRILRSCFTPDVVTFTSLI-KVCKPDAIT--------------------YNTIIDG 129
             +   +      P+ VT++ LI   CK   +                     Y+++I G
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            CK G +  AK LF +M    +KPNVV YTS+I G+C   + + A RL+ EM  +G+ PN
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
             TF  ++  LC   +M EA+ L   M++  V P+  TYN L++G C  G    A EL  
Sbjct: 495 TYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLD 554

Query: 250 SMESMG 255
            M   G
Sbjct: 555 EMVEKG 560



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 120/272 (44%), Gaps = 41/272 (15%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+  +  P  V+ +N+++    K  +      L   +   GL PD YT+  L
Sbjct: 513 EANKLFGEMVEWNVIPNEVT-YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  C  GRVS       R   +    +       I+ C P+ +TY  +I+GLCK G +D
Sbjct: 572 ISGLCSTGRVSEA-----REFMNDLQGEQQKLNE-IEGCLPNVVTYTALINGLCKIGLMD 625

Query: 138 KAKELFLKMKDKNVKPN----------------------------------VVTYTSVIR 163
           KA+ L  +M   N  PN                                   VTY  +IR
Sbjct: 626 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIR 685

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           GFC      EA  + + M+D G+ P+ ++++ I+ E C+ G + EA  L + M+  GV P
Sbjct: 686 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 745

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D   YN L+ G C+TG +  A EL   M   G
Sbjct: 746 DTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 777



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 21/210 (10%)

Query: 60  KRLNS-TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           ++LN   G  P++ T++ LIN  CK+G +    ++   +L S   P+  T+   +     
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 655

Query: 119 DA--------------------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +                     +TYN +I G CK G + +A E+ + M D  + P+ ++Y
Sbjct: 656 EGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISY 715

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           +++I  +C   D  EA +L+  M+++GV P+ V +N ++   C  G++ +A  L D M++
Sbjct: 716 STIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR 775

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            GV+P+  TYN+L+ G CL   V+   + F
Sbjct: 776 RGVKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+ +  L KN+     + +   L+  GL  D+ T+  L+   CK+     G  ++ 
Sbjct: 250 VATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMN 309

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F P     ++L+              DGL K+G +  A +L  K+K   V P++
Sbjct: 310 EMIEFGFVPSEAAVSNLV--------------DGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y ++I   C     +EA+ LF  M  +G+ PN VT+++++D  CK GK+D A   L  
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G++   + Y++L+ G C  G++  AK LF  M + G
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + + +L  L + + +   L LF  + S+GL PD+Y ++ ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +GR+  S               C     TYN  I GLCK   V +A E+   +  K ++ 
Sbjct: 238 IGRMESSG--------------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY +++ G C   ++   + +  EM++ G  P+    + ++D L K G +  A  L+
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + + + GV P  F YN L++  C  G+++ A+ LF +M   G
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 133 QGFVDKAKEL-----FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           Q +V   +EL        M D  + P + T + V+ G      +  A  LF E++  G++
Sbjct: 153 QTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLR 212

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+V  +  ++  LC+      A  ++  M   G      TYN  + G C   RV  A E+
Sbjct: 213 PDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEI 272



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           MMD G+ P + T + +++ L +  +   A  L D ++  G+RPD + Y  ++   C    
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 241 VNHAKELFVSMESMGC 256
              A+E+   MES GC
Sbjct: 231 FIRAREVIGRMESSGC 246


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 136/245 (55%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++G   K+   D  L + +R++   + PD+ T++ ++   C  G++     V
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 94  LGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           L R + R C+ PDV+T+T LI                     K CKPD +TYN +I+G+C
Sbjct: 232 LDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A +    M     +PNV+T+  ++R  C    W +A+RL  +M+ +G  P+VV
Sbjct: 291 KEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVV 350

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN++++ LC+   +  A  +L+ M +HG  P++ +YN LL GFC   +++ A E    M
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410

Query: 252 ESMGC 256
            S GC
Sbjct: 411 VSRGC 415



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           NI L  L +N   +  L   +R+   G  PD+   + LI  FC+ G+      ++  +  
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 100 SCFTPDVVTFTSLI-KVCK-----------------PDAITYNTIIDGLCKQGFVDKAKE 141
           S   PDV+T+  LI   CK                 PD +TYNTI+  LC  G + +A E
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAME 230

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +  +   +   P+V+TYT +I   C  +   +A +L  EM  +G +P+VVT+NV+++ +C
Sbjct: 231 VLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA   L+ M  +G +P+  T+N +L   C TGR   A+ L   M   GC
Sbjct: 291 KEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGC 345



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P V ++N+++  + K    D  +     +   G  P++ TH+I+
Sbjct: 262 QAMKLLDEM-RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNII 320

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C  GR      +L  +LR              K C P  +T+N +I+ LC++  + 
Sbjct: 321 LRSMCSTGRWMDAERLLADMLR--------------KGCSPSVVTFNILINFLCRKRLLG 366

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  KM      PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++
Sbjct: 367 RAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL 426

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK+GK D A  +L+ +   G  P   TYNT++DG    G+  +A EL   M   G
Sbjct: 427 TALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKG 484



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 24/232 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR   SP  V +FNI++  L + +     + + +++   G  P+  +++ L++ FC+  
Sbjct: 340 MLRKGCSPS-VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 86  RVSHGFVVLGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITY 123
           ++      L  ++ R C+ PD+VT+ +L+                     K C P  ITY
Sbjct: 399 KMDRAIEYLEIMVSRGCY-PDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITY 457

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT+IDGL K G  + A EL  +M+ K +KP+++TY++++RG       +EA ++F +M  
Sbjct: 458 NTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEG 517

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             ++P+ VT+N IM  LCK  +   A   L  M++ G +P   TY  L++G 
Sbjct: 518 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 24/206 (11%)

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
           +  +I +    + G +  G   L R++     PDV+  TSLI+  C+             
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD ITYN +I G CK G +DKA ++  +M   +V P+VVTY +++R  C +  
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGK 224

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA  +    M +   P+V+T+ ++++  C +  + +A  LLD M + G +PD  TYN 
Sbjct: 225 LKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 284

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           L++G C  GR++ A +   +M   GC
Sbjct: 285 LINGICKEGRLDEAIKFLNNMPLYGC 310


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 95/347 (27%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           E+L  +G   ++ +  ++A+ +F  M++  P P  +  F+ +L  +AK   +D V+SL +
Sbjct: 50  EKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGE 105

Query: 61  RLNSTGLFPDLYTHSILINCFC----------------KMG------------------- 85
           ++ + G+  + YT+SILINCFC                K+G                   
Sbjct: 106 QMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
           R+S    ++ ++  + + P+ VTF +LI                     K C+PD +TY 
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYG 225

Query: 125 -----------------------------------TIIDGLCKQGFVDKAKELFLKMKDK 149
                                              TIIDGLCK   +D A  LF +M+ K
Sbjct: 226 VVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            ++PNVVTY+S+I   C    W++A RL  +M+++ + P+V TF+ ++D   K GK+ EA
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L D M++  + P   TY++L++GFC+  R++ AK++F  M S  C
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 140/278 (50%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--- 90
           P V  +  ++  L KNKH D  L+LFK + + G+ P++ T+S LI+C C  GR S     
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 91  ----------------------FVVLGRIL----------RSCFTPDVVTFTSLI----- 113
                                 FV  G+++          +    P +VT++SLI     
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           K C PD ++Y+T+I G CK   VD+  ELF +M  + +  N VT
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I+G   A D + A+ +F EM+  GV PN++T+N ++D LCKNGK+++A  + + + 
Sbjct: 434 YTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + P  +TYN +++G C  G+V    +LF ++   G
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FPD+ ++S L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I  FCK  RV  G  +   + +     + VT+T+LI+                       
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYNT++DGLCK G ++KA  +F  ++   ++P + TY  +I G C A    +   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+P+VV +N ++   C+ G  +EA +L   M + G  P++  YNTL+    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 583 RDGDREASAELIKEMRSCG 601



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 26/243 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F++M+  H   P V S++ ++    K K  D  + LF+ ++  GL  +  T++ 
Sbjct: 378 DEAKQMFEFMVSKH-CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI    + G       +   ++     P+++T+ +L+  +CK                  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TYN +I+G+CK G V+   +LF  +  K VKP+VV Y ++I GFC      EA 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTL 231
            LF EM + G  PN   +N ++    ++G  + ++ L+  M   G   DA T     N L
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616

Query: 232 LDG 234
            DG
Sbjct: 617 HDG 619


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 137/258 (53%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  +  M+ M P P  V  FN++ G +AK KHY T +SL K ++  G+ P++ TH+I+I
Sbjct: 10  ALDFYHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVI 68

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------K 117
           NC C++     GF VLG + +    P +VTFT+++  +C                    +
Sbjct: 69  NCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYE 128

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D  T   II+GLCK G    A     KM+++N   +V  Y++V+ G C      EA  L
Sbjct: 129 SDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDL 188

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  +G+QPN+ T+N ++  LC   +  EA+ LL  M++ G+ PD  T+N +   F  
Sbjct: 189 FSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLK 248

Query: 238 TGRVNHAKELFVSMESMG 255
           TG ++ AK +F  M  MG
Sbjct: 249 TGMISRAKSIFSFMGHMG 266



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V++++ ++  L K+      L LF ++   G+ P+L+T++ LI+  C   R      +L 
Sbjct: 166 VTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLA 225

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++R    PDV TF              N I     K G + +AK +F  M    ++ NV
Sbjct: 226 NMMRKGIMPDVQTF--------------NVIAGRFLKTGMISRAKSIFSFMGHMGIEHNV 271

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY S+I   C  N   +A  +F  M+ +G  PN+VT+N ++   C+   M++A   L  
Sbjct: 272 VTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGE 331

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+ +G+ PD  T++TL+ GFC  G+   AKELF  M   G
Sbjct: 332 MVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHG 371



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN++ G   K        S+F  +   G+  ++ T++ +I   C + ++     V
Sbjct: 234 PDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEV 293

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++R    P++VT+ SLI   C+                    PD +T++T+I G CK
Sbjct: 294 FDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCK 353

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    AKELF  M      P++ T   ++ G    +  +EA  LF E+       +++ 
Sbjct: 354 AGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIII 413

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++I++ +C +GK+++A  L   +   GV+ D  TYN +++G C  G ++ A++L + ME
Sbjct: 414 YSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKME 473

Query: 253 SMGC 256
             GC
Sbjct: 474 ENGC 477



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  IF +M  M      V ++N ++G           + +F  +   G  P++ T++ 
Sbjct: 253 SRAKSIFSFMGHM-GIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNS 311

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +C+   ++     LG ++ +   PDVVT+++LI   CK                  
Sbjct: 312 LIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHG 371

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T   I+DGL K  F  +A  LF +++  N   +++ Y+ ++ G C +   N+A 
Sbjct: 372 QLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDAL 431

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +  +GV+ +VVT+N++++ LCK G +D+A  LL  M ++G  PD  TYN  + G 
Sbjct: 432 ELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 491

Query: 236 CLTGRVNHAKELFVSMESMG 255
                ++ + +  + M+  G
Sbjct: 492 LRRYEISKSTKYLMFMKGKG 511



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 23/254 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+R     P + ++N ++    + K+ +  +     + + GL PD+ T S L
Sbjct: 289 DAMEVFDLMIR-KGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTL 347

Query: 78  INCFCKMGRV-----------SHG--------FVVLGRILRSCFTPDVVT-FTSLIKV-C 116
           I  FCK G+             HG         ++L  + +  F  + ++ F  L K+  
Sbjct: 348 IGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 407

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D I Y+ I++G+C  G ++ A ELF  +  K VK +VVTY  +I G C     ++A+ 
Sbjct: 408 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 467

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L ++M + G  P+  T+NV +  L +  ++ +++  L  M   G R +A T   L++ F 
Sbjct: 468 LLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS 527

Query: 237 LTGRVNHAKELFVS 250
              + N A ++F+ 
Sbjct: 528 -ANKENRAFQVFLQ 540



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A + + KM      P V  +  +         +  A  L   M   GV+PNV T N+
Sbjct: 7   VDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNI 66

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ LC+        S+L LM + GV P   T+ T+++G C+ G V  A      ++ MG
Sbjct: 67  VINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMG 126


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 146/263 (55%), Gaps = 22/263 (8%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           I  ++A+  F  M+ M+P P  V      LG +AK K Y TV+SL  +++  G+  + YT
Sbjct: 65  IGIDDAMASFYRMIHMNPRPSFVE-LGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYT 123

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------- 113
            +ILIN  C++  +     VL ++ +    PD VTFT+LI                    
Sbjct: 124 LNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMA 183

Query: 114 -KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            +   P+ +T+  ++D LCK+G V +A+ +F  M +K V+PN+ TY +++ G+C   + N
Sbjct: 184 GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMN 243

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A ++F  M+ +G  P+V +++++++  CK+ ++DEA +LL  M +  + P+  TYNTL+
Sbjct: 244 DASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLM 303

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G C    +  A+ELF  M S G
Sbjct: 304 QGLCHASSLLEAQELFKKMCSSG 326



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +   M ++   P  V+ F  ++  L         + LF  +      P+  T +IL+
Sbjct: 140 AVSVLSKMFKLGIQPDSVT-FTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILV 198

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           +  CK G VS    V   +      P++ T+ +L+                     K C 
Sbjct: 199 DVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCA 258

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   +Y+ +I+G CK   +D+AK L  +M +K + PN VTY ++++G C+A+   EA+ L
Sbjct: 259 PSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQEL 318

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M   G+ PN+ T+++++D LCK+G ++EA  LL  M +  + PD   YN L+ G  +
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFI 378

Query: 238 TGRVNHAKELFVSMESMG 255
            G++  AKELF  + + G
Sbjct: 379 AGKLEVAKELFSKLFANG 396



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA C+F+ M       P + ++N ++         +    +F+ +   G  P ++++SI
Sbjct: 208 SEARCVFETMTE-KGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSI 266

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCK-- 117
           LIN +CK  R+     +L ++      P+ VT+ +L+                 K+C   
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSG 326

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TY+ ++DGLCK G +++A +L   M+++ ++P++V Y  +I+G   A     AK
Sbjct: 327 MLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAK 386

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF ++   G++P+V T+N+++  L K G  DEA  L   M   G  PD+ +YN ++ GF
Sbjct: 387 ELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGF 446



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L           LFK++ S+G+ P+L T+SIL++  CK G +     +
Sbjct: 294 PNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKL 353

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +      PD+V               YN +I G+   G ++ AKELF K+    ++P
Sbjct: 354 LTSMQERKLEPDIVL--------------YNILIQGMFIAGKLEVAKELFSKLFANGIRP 399

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY  +I+G       +EA +LF +M D G  P+  ++NVI+    +N     A  L+
Sbjct: 400 SVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLI 459

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
           D M+      D+ T+  LLD
Sbjct: 460 DEMVGRRFSADSSTFKMLLD 479



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NIM+  L K    D    LF+++   G  PD  +++++I  F +    S    +
Sbjct: 399 PSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQL 458

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           +  ++   F+ D  TF  L+ +   D I
Sbjct: 459 IDEMVGRRFSADSSTFKMLLDLESHDEI 486


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 133/245 (54%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  +L  L         L  F ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA+ L D M+  G+ P+  TYN+++DGFC   R++ A+++F  M
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 141/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G+I +    PDVVTFT+L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +L    +PDVVT+ +LI                         P+ ITYN++IDG CK
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +D A+++F  M  K   P+V T+T++I G+C A   ++   L  EM  +G+  N VT
Sbjct: 373 QDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C  G ++ A  L   MI  GV PD  T NTLLDG C  G++  A E+F +M+
Sbjct: 433 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P V +F  ++      K  D  + L   +   GL  +  T++ LI+ FC +
Sbjct: 384 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +  +++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD +TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F+ M  +   PNVVTFN +++  CK G++D+   L   M + G+  DA  Y TL+
Sbjct: 564 EATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 YGFRKVGNINGALDIFQEMISSG 646



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 21/179 (11%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAI-----------------TYNTIIDGLCKQGF 135
           +LRS   P VV F  L+ V     +PD +                 ++N +I   C    
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSK 129

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A   F K+    + P+VVT+T+++ G C  +  +EA   F +M +   +PNVVTF  
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +M+ LC+ G++ EA +LLD M++ G++P   TY T++DG C  G    A  L   ME +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 18/197 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTF              NT+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFVSMGSKSFSPNVVTF--------------NTLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  + + Y ++I GF    + N A  +F EM+  GV P+ +T   ++       ++
Sbjct: 608 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 667

Query: 207 DEASSLL-DLMIQHGVR 222
           + A ++L DL +  G +
Sbjct: 668 ERAVAMLEDLQMSVGYQ 684



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +FN+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+ TLL G C+  RV+ A + F  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 21/240 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++ML   P P  +    ++   +   ++YD V+SL + +   GL P+ YT +I
Sbjct: 66  DDALASFNHMLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNI 125

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LINCFCK+  V  GF VL ++++    PDVV FT              T+I+GLCK G  
Sbjct: 126 LINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFT--------------TLINGLCKVGKF 171

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ELF    D+ V+     Y S+I G C  + W EA  +  EM    + P++VTFNV+
Sbjct: 172 SQAVELF----DETVERG---YNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVL 224

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D  CK GK+ EA  +L  M +  V  D  TYN+L+ G  L   V  A++LF  M + GC
Sbjct: 225 VDTFCKEGKVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGC 284



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 126/271 (46%), Gaps = 51/271 (18%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P   + NI++ C  K +H D   S+  ++   GL PD+   + LIN  CK+G+ S     
Sbjct: 118 PNTYTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVEL 177

Query: 89  -------------HGF----------VVLGRILRSCFTPDVVTFTSLIKV-CKP------ 118
                        HG            +L  +      PD+VTF  L+   CK       
Sbjct: 178 FDETVERGYNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEA 237

Query: 119 --------------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                         D +TYN+++ G      V +A++LF  M  K  KPNV +Y  +I G
Sbjct: 238 QGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILING 297

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +C A   +EAK+LF EM+ QG+ PN+V++N      C+ GK+ EA  L + M  +G  PD
Sbjct: 298 YCKAEMIDEAKQLFNEMIHQGLTPNIVSYNT--HGFCQLGKLREAQELNENMHTNGNLPD 355

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             TY+ LLDGFC  G    A++LF  +   G
Sbjct: 356 LCTYSILLDGFCKQGNHIAARKLFSELFVQG 386



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 70/271 (25%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L     +    ++   + S  + PD+ T ++L++ FCK G+VS    VL  + 
Sbjct: 186 YNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMT 245

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
                 DVVT+ SL+                     K CKP+  +YN +I+G CK   +D
Sbjct: 246 EMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMID 305

Query: 138 KAKELFLKMKDKNVKPNVV---------------------------------TYTSVIRG 164
           +AK+LF +M  + + PN+V                                 TY+ ++ G
Sbjct: 306 EAKQLFNEMIHQGLTPNIVSYNTHGFCQLGKLREAQELNENMHTNGNLPDLCTYSILLDG 365

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           FC   +   A++LF E+  QG+Q                  +DEA      M + G  P+
Sbjct: 366 FCKQGNHIAARKLFSELFVQGLQR----------------LLDEALETFRKMEEDGCPPN 409

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++YN ++ GF      + A +L   M   G
Sbjct: 410 EWSYNVIIRGFLRHRDESRAVQLIGEMRDRG 440


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 136/253 (53%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F  ML   P P  V  F+ +   + +  HY+TV+ L K +   G+  D+++ SI
Sbjct: 44  DDALASFRLMLLRKPLPCIVE-FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSI 102

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS---------------------LIKV 115
           LINCFC + RV  G  VL +IL+    P +VTFT+                     L++ 
Sbjct: 103 LINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRG 162

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYN II+ L K G  ++A     +M+     PNVV Y+++I G+C     +EA+
Sbjct: 163 LQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEAR 222

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M+ +G  PNV T+  +M+  CK  +++EA  LLD  ++ G+ PD  T+ T++ G 
Sbjct: 223 SVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGL 282

Query: 236 CLTGRVNHAKELF 248
           C  GR   A++LF
Sbjct: 283 CRAGRPLAAQQLF 295



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 132/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL     M ++    P V +++ ++         D   S+F  + S G  P++YT++ 
Sbjct: 184 NEALGFLKQMEKV-GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTS 242

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L+N +CK+ R+     +L   LR    PD+VTFT++I  +C+                  
Sbjct: 243 LMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHG 302

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY  ++DGLCK G +++A  LF +M+   VKPN+V YT +I   C      + K
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGK 362

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  ++D+G++PNV T+  ++  LCK G + EA  L   M + G  PD   YN ++ GF
Sbjct: 363 ELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGF 422

Query: 236 CLTGRVNHAKELFVSMESMG 255
                 + A++L   M + G
Sbjct: 423 LQHKDPSMARQLVEEMVNRG 442



 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ + ++D ML +    P V ++N+++  L+K+   +  L   K++   G  P++  +S 
Sbjct: 149 DQVMMLYDDML-VRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYST 207

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +C  G++     V   ++    TP+V T+TSL+   CK                  
Sbjct: 208 LIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKG 267

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +T+ TII GLC+ G    A++LF  +      PN++TY  ++ G C   +  EA 
Sbjct: 268 LVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAF 327

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM    V+PN+V + +++D LCK GK+ +   L   +I  G++P+ +TY  L+   
Sbjct: 328 ALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGAL 387

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G +  A +LF  ME  GC
Sbjct: 388 CKEGLIIEAHKLFRKMEEDGC 408



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 75/139 (53%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + ++ +   + + G  +    L  +++   ++ ++ + + +I  FC+ +  +    +
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G++P++VTF  +++ LC  GKMD+   L D M+  G++P+ +TYN +++    
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 238 TGRVNHAKELFVSMESMGC 256
           +G+ N A      ME +GC
Sbjct: 180 SGKANEALGFLKQMEKVGC 198



 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 56/119 (47%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A   F  M  +   P +V ++ +         +     L  E+   G++ ++ + +++
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C   ++D   S+L  +++ G+ P   T+ TLL+G C+ G+++    L+  M   G
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRG 162


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 144/279 (51%), Gaps = 42/279 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYT 73
            +A  +FD +LR       +   N  L  +A++     V S + R+   G   + PDL T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCT 89

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------- 114
           + ILI C C+ GR+  GF  LG +++  F  + +TFT L+K                   
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 115 ---VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTSVIRGFCYA 168
               C P+  +YN +++GLC +    +A EL   M D       P+VV+YT+VI GF   
Sbjct: 150 TELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD------------EASSLLDLM 216
            D ++A   + EM+D+G+ P+VVT++ I+  LCK   MD            E+  L DLM
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLM 269

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ GV+PD  TY+TL+DG+CL G+++ A +L   M S+G
Sbjct: 270 VRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 308



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 35/274 (12%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+  ++    K    D   S +  +   G+ PD+ T+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 75  SILINCFCK------------MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----- 116
           S +I   CK             GRV     +   ++R    PD++T+++LI   C     
Sbjct: 235 SSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 294

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                          KP+ +TY+T+I+G CK   ++ A  LF +M+   V P+++TY  +
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 354

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           ++G         AK L++ + + G Q  + T+N+I+  LCKN   D+A  +   +    +
Sbjct: 355 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDL 414

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + +A T+N ++D     GR + AK+LFV+  S G
Sbjct: 415 KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 22/207 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M+ +   P  V+ ++ ++    K    +  L LFK + S+G+ PD+ T++I
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           ++    +  R +    +  RI  S    ++ T+  ++  +CK                  
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +A T+N +ID L K G  D+AK+LF+      + PN  TY  +           E  
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 473

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCK 202
           +LF+ M D G   +    N I+ EL +
Sbjct: 474 QLFLSMEDNGCTVDSGMLNFIVRELLQ 500


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ +F   +R     P V ++N ++  L KN        +F  +   GL P++ T+ 
Sbjct: 174 PKEAI-VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYG 232

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            L+  +   G +     +L  ++R+   P+   F+ L+                     +
Sbjct: 233 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 292

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+A+TY  +I  LCK G V+ A   F +M D+ + P  + Y S+I G C  N W  A
Sbjct: 293 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 352

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L +EM+D+G+  N + FN I+D  CK G++ E+  L DLM++ GV+PD  TY+TL+DG
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +CL G+++ A +L  SM S+G
Sbjct: 413 YCLAGKMDEATKLLASMVSVG 433



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 211 EARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 269

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------- 117
           +  + K  +V    +V  ++ +    P+ VT+ ++I + CK                   
Sbjct: 270 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 329

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  I YN++I GLC     ++A+EL L+M D+ +  N + + S+I   C      E+++
Sbjct: 330 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 389

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+  GV+P+++T++ ++D  C  GKMDEA+ LL  M+  G++PD  TY+TL++G+C
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYC 449

Query: 237 LTGRVNHAKELFVSMESMG 255
              R+  A  LF  MES G
Sbjct: 450 KISRMKDALVLFREMESSG 468



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 18/225 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTH 74
            +A  +FD +LR     P V S+NI+L  L         L L   +   G    PD+ ++
Sbjct: 34  EDARHVFDELLR--RGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +IN F K G +   +     +L    +P+VVT              YN+II  LCK  
Sbjct: 92  STVINGFFKEGDLDKTYSTYNEMLDQRISPNVVT--------------YNSIIAALCKAQ 137

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VDKA E+   M    V P+ +TY S++ GFC +    EA     +M   GV+P+VVT+N
Sbjct: 138 TVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYN 197

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +MD LCKNG+  EA  + D M + G++P+  TY TLL G+   G
Sbjct: 198 SLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 242



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 13/198 (6%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           +F  L   G+ PD+++++IL+N  C   R      +L  +                  C 
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGD------------CP 85

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ++Y+T+I+G  K+G +DK    + +M D+ + PNVVTY S+I   C A   ++A  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  GV P+ +T+N I+   C +G+  EA   L  M   GV PD  TYN+L+D  C 
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205

Query: 238 TGRVNHAKELFVSMESMG 255
            GR   A+++F SM   G
Sbjct: 206 NGRCTEARKIFDSMTKRG 223



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T+S 
Sbjct: 386 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYST 443

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 444 LINGYCKISRMKDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 489

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ +     +  + TY  ++ G C     ++A R+F  +    ++    TFN++
Sbjct: 490 AAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIM 549

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D L K G+ DEA  L      +G+ P+ +TY  + +     G +    +LF+SME  GC
Sbjct: 550 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 609



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F  M R     P   ++  ++G L K+   +  +  F+++   GL P    ++ 
Sbjct: 280 EEAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 338

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  C   +      ++  +L      + + F S+I                       
Sbjct: 339 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 398

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD ITY+T+IDG C  G +D+A +L   M    +KP+ VTY+++I G+C  +   +A 
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDAL 458

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM   GV P+++T+N+I+  L +  +   A  L   + + G + +  TYN +L G 
Sbjct: 459 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGL 518

Query: 236 CLTGRVNHAKELFVSM 251
           C     + A  +F ++
Sbjct: 519 CKNKLTDDALRMFQNL 534



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+  F+ M+    SP  +   +++ G    NK ++    L   +   G+  +    + 
Sbjct: 315 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK-WERAEELILEMLDRGICLNTIFFNS 373

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+  CK GRV     +   ++R    PD++T+++LI   C                   
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TY+T+I+G CK   +  A  LF +M+   V P+++TY  +++G         AK
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ +   G Q  + T+N+I+  LCKN   D+A  +   +    ++ +A T+N ++D  
Sbjct: 494 ELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 553

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR + AK+LFV+  S G
Sbjct: 554 LKVGRNDEAKDLFVAFSSNG 573



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 21/221 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++    K       L LF+ + S+G+ PD+ T++I++    +  R +    +
Sbjct: 436 PDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 495

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
              I +S    ++ T+  ++  +CK                     +A T+N +ID L K
Sbjct: 496 YVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLK 555

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+AK+LF+      + PN  TY  +           E  +LF+ M D G   +   
Sbjct: 556 VGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGM 615

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            N I+ EL + G++  A + L ++ +     +A T +  +D
Sbjct: 616 LNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 656


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 23/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL + + M +       V  +N ++  L K KH D    LF ++ + G+ PD++T++
Sbjct: 231 PDLALNLLNKMEK-GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
            LI+C C  GR S    +L  +L     PD+V F +LI                      
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K C PD + YNT+I G CK   V++  E+F +M  + +  N VTYT++I GF  A D + 
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ +F +M+  GV P+++T+N+++D LC NG ++ A  + + M +  ++ D  TY T+++
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
             C  G+V    +LF S+   G
Sbjct: 470 ALCKAGKVEDGWDLFCSLSLKG 491



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 149/331 (45%), Gaps = 93/331 (28%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  F+ +L  +AK   +D V+SL +++ + G+  +LYT+SI
Sbjct: 57  DDAIGLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 77  LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
            IN FC+  ++S    +LG++++                                     
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITY----------------- 123
           + PD VTFT+L+                     K C+PD +TY                 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 124 ------------------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                             NTIIDGLCK   +D A +LF KM+ K +KP+V TY  +I   
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPD 224
           C    W++A RL  +M+++ + P++V FN ++D   K GK+ EA  L D M++     PD
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              YNTL+ GFC   RV    E+F  M   G
Sbjct: 356 VVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P +  FN ++    K         L+  +  S   FPD+  ++ LI  FCK  RV  G  
Sbjct: 318 PDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGME 377

Query: 93  VLGRILRSCFTPDVVTFTSLI------KVC---------------KPDAITYNTIIDGLC 131
           V   + +     + VT+T+LI      + C                PD +TYN ++DGLC
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G V+ A  +F  M+ +++K ++VTYT++I   C A    +   LF  +  +GV+PNVV
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  +M   C+ G  +EA +L   M + G  P++ TYNTL+      G    + EL   M
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557

Query: 252 ESMG 255
            S G
Sbjct: 558 RSCG 561



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 25/242 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P V ++N ++    K K  +  + +F+ ++  GL  +  T++ L
Sbjct: 338 EAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTL 397

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ F +     +  +V  +++     PD++T+  L+                     +  
Sbjct: 398 IHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D +TY T+I+ LCK G V+   +LF  +  K VKPNVVTYT+++ GFC      EA  
Sbjct: 458 KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 517

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTLL 232
           LF+EM + G  PN  T+N ++    ++G    ++ L+  M   G   DA T+    N L 
Sbjct: 518 LFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLH 577

Query: 233 DG 234
           DG
Sbjct: 578 DG 579



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + ++ ++  + K    D    L  +M++  +  N+ TY+  I  FC  +  + A  +
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +MM  G  P++VT N +++  C   ++ EA +L+D M++ G +PD  T+ TL+ G   
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192

Query: 238 TGRVNHAKELFVSMESMGC 256
             + + A  L   M   GC
Sbjct: 193 HNKASEAVALVERMVVKGC 211



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF  M      P++V ++ ++      N ++    L  +M + G+  N+ T+++
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  C+  ++  A ++L  M++ G  P   T N+LL+GFC   R++ A  L   M  MG
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 42/278 (15%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +A  +FD +LR       +   N  L  +A++     V S + R+   G   + PDL T+
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
            ILI C C+ GR+  GF  LG +++  F  + +TFT L+K                    
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTSVIRGFCYAN 169
              C P+  +YN +++GLC +    +A EL   M D       P+VV+YT+VI GF    
Sbjct: 151 ELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD------------EASSLLDLMI 217
           D ++A   + EM+D+G+ P+VVT++ I+  LCK   MD            E+  L DLM+
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMV 270

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + GV+PD  TY+TL+DG+CL G+++ A +L   M S+G
Sbjct: 271 RIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 308



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 35/274 (12%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+  ++    K    D   S +  +   G+ PD+ T+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 75  SILINCFCK------------MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----- 116
           S +I   CK             GRV     +   ++R    PD++T+++LI   C     
Sbjct: 235 SSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 294

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                          KP+ +TY+T+I+G CK   ++ A  LF +M+   V P+++TY  +
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 354

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           ++G         AK L++ + + G Q  + T+N+I+  LCKN   D+A  +   +    +
Sbjct: 355 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDL 414

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + +A T+N ++D     GR + AK+LFV+  S G
Sbjct: 415 KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 22/209 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M+ +   P  V+ ++ ++    K    +  L LFK + S+G+ PD+ T++I
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           ++    +  R +    +  RI  S    ++ T+  ++  +CK                  
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +A T+N +ID L K G  D+AK+LF+      + PN  TY  +           E  
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 473

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +LF+ M D G   +    N I+ EL + G
Sbjct: 474 QLFLSMEDNGCTVDSGMLNFIVRELLQRG 502


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 135/238 (56%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+      P + +++ ++  L + +   T++ L + + + GL P++YT++I 
Sbjct: 210 EALKVYKRMIS-EGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC 268

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + GR+   + +L               T   + C PD +TY  +ID LC  G +D
Sbjct: 269 IRVLGRAGRIDDAYGILK--------------TMEDEGCGPDVVTYTVLIDALCAAGKLD 314

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KAKEL+ KM+  + KP++VTY +++  F    D    KR + EM   G  P+VVT+ +++
Sbjct: 315 KAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILV 374

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK+GK+D+A  +LD+M   G+ P+  TYNTL+ G     R++ A ELF +MES+G
Sbjct: 375 EALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLG 432



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 15/237 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL  F+ M +     P +++ N  L  LA+         +F  +++ GL PD  T++
Sbjct: 453 PEKALDTFEKM-KKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYN 511

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++ C+ K G++     +L  +L               + C+PD I  N++ID L K G 
Sbjct: 512 MMMKCYSKAGQIDKATKLLTEMLS--------------EGCEPDIIVVNSLIDTLYKAGR 557

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD+A ++F ++KD  + P VVTY  +I G        +A  LF  M + G  PN VTFN 
Sbjct: 558 VDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNA 617

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++D LCKN  +D A  +   M      PD  TYNT++ G    GR  +A   +  M+
Sbjct: 618 LLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK 674



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P + ++N++L    K+K  D +  L+  +   G  P++ TH+I+I+   K   ++    +
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880

Query: 94   LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
               I+   F+P   T+  LI                       CKP+   YN +I+G  K
Sbjct: 881  YYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
             G V+ A +LF +M  + ++P++ +YT ++         ++A   F E+   G+ P+ V+
Sbjct: 941  AGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +N++++ L K+ +++EA SL   M   G+ P+ +TYN L+  F   G V+ A ++F  ++
Sbjct: 1001 YNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQ 1060

Query: 253  SMG 255
             MG
Sbjct: 1061 FMG 1063



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 17/233 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   L  HP+P    S+N ++  L      +  L LF  + + G  P+++T+++L++   
Sbjct: 778 FTKSLGTHPTP---ESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHG 834

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K  R+   F +   +L               + CKP+ IT+N II  L K   ++KA +L
Sbjct: 835 KSKRIDELFELYNEML--------------CRGCKPNIITHNIIISALVKSNSINKALDL 880

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           + ++   +  P   TY  +I G   A    EA ++F EM D   +PN   +N++++   K
Sbjct: 881 YYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G ++ A  L   MI+ G+RPD  +Y  L++   +TGRV+ A   F  ++  G
Sbjct: 941 AGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 30/269 (11%)

Query: 18  EALC-------IFDYM--LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           EALC        FD +  +R+    P + ++N ++  L   +  D  L LF  + S G+ 
Sbjct: 375 EALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVA 434

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK------- 117
           P  Y++ + I+ + K+G          ++ +    P +     +  SL ++ +       
Sbjct: 435 PTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDI 494

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD++TYN ++    K G +DKA +L  +M  +  +P+++   S+I     
Sbjct: 495 FNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYK 554

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   +EA ++F  + D  + P VVT+N+++  L K GK+ +A  L   M + G  P+  T
Sbjct: 555 AGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVT 614

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +N LLD  C    V+ A ++F  M  M C
Sbjct: 615 FNALLDCLCKNDAVDLALKMFCRMTIMNC 643



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 19/216 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            EA+ IF+ M   +   P  + +NI++    K  + +    LFKR+   G+ PDL +++IL
Sbjct: 911  EAMKIFEEMPD-YQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTIL 969

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--KPDAITYNTIIDGLCKQGF 135
            + C    GRV                 D V +   +K+    PD ++YN +I+GL K   
Sbjct: 970  VECLFMTGRVD----------------DAVHYFEELKLTGLDPDTVSYNLMINGLGKSRR 1013

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            +++A  LF +MK++ + P + TY ++I  F  A   ++A ++F E+   G++PNV T+N 
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            ++    K+G  D A S+   M+  G  P+A T+  L
Sbjct: 1074 LIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I +  L +    D    + K +   G  PD+ T+++LI+  C  G++     +
Sbjct: 260 PNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKEL 319

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++  S   PD+VT+ +L+                         PD +TY  +++ LCK
Sbjct: 320 YTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A ++   M+ + + PN+ TY ++I G       +EA  LF  M   GV P   +
Sbjct: 380 SGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYS 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + + +D   K G  ++A    + M + G+ P     N  L      GR+  AK++F  + 
Sbjct: 440 YVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIH 499

Query: 253 SMG 255
           + G
Sbjct: 500 NCG 502



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 15/246 (6%)

Query: 9   GDITTIT-PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           G + +I+ PN AL  F  + ++        + N ML  L  +   + +  +F  +    +
Sbjct: 94  GALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVI 153

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
             +  T+  +       G +      LG++ ++ F  +              A +YN +I
Sbjct: 154 NRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLN--------------AYSYNGLI 199

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
             L + GF  +A +++ +M  + +KP++ TY++++       D      L  EM   G++
Sbjct: 200 YFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLR 259

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+ T+ + +  L + G++D+A  +L  M   G  PD  TY  L+D  C  G+++ AKEL
Sbjct: 260 PNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKEL 319

Query: 248 FVSMES 253
           +  M +
Sbjct: 320 YTKMRA 325



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   +YN ++DGL      + A +LF++MK+    PN+ TY  ++     +   +E   L
Sbjct: 786 PTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFEL 845

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G +PN++T N+I+  L K+  +++A  L   +I     P   TY  L+ G   
Sbjct: 846 YNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLK 905

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR   A ++F  M    C
Sbjct: 906 AGRSEEAMKIFEEMPDYQC 924



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 108/276 (39%), Gaps = 53/276 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F  M +    PP   +FN +L CL KN   D  L +F R+      PD+ T++ +
Sbjct: 595 KALDLFGSM-KESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTI 653

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    K GR  + F                 +  + K   PD +T  T++ G+ K G V+
Sbjct: 654 IYGLIKEGRAGYAFWF---------------YHQMKKFLSPDHVTLYTLLPGVVKDGRVE 698

Query: 138 KAKELFLKMKDKN-----------------VKPNVVTYTS-------------------V 161
            A ++ ++   ++                 ++  +    S                   +
Sbjct: 699 DAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPL 758

Query: 162 IRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           IR  C      +AK+LF +     G  P   ++N +MD L      + A  L   M   G
Sbjct: 759 IRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAG 818

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             P+ FTYN LLD    + R++   EL+  M   GC
Sbjct: 819 CCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGC 854



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V GR+    F  D++      +V   +  TY TI   L  +G + +A     KM+     
Sbjct: 134 VHGRVEDMAFVFDLMQ----KQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFV 189

Query: 153 PNVVTYTSVIR-----GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            N  +Y  +I      GFC      EA +++  M+ +G++P++ T++ +M  L +     
Sbjct: 190 LNAYSYNGLIYFLLQPGFC-----KEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTG 244

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               LL+ M   G+RP+ +TY   +      GR++ A  +  +ME  GC
Sbjct: 245 TIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGC 293


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 152/270 (56%), Gaps = 22/270 (8%)

Query: 1   ERLK-SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF 59
           ERLK  SG  +I  +  ++A+ +F YM+R  P  P V  F  +LG + + +  D V+SL 
Sbjct: 43  ERLKLQSGFHEIKGL--DDAIDLFGYMVRSRP-LPCVIDFCKLLGVVVRMERPDVVISLH 99

Query: 60  KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------ 113
           +++    +  ++Y+ +ILI CFC   ++       G+I +  F P +VTF++L+      
Sbjct: 100 RKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVE 159

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      ++CKP+ I + T+++GLC++G V +A  L  +M +  ++PN +TY +++
Sbjct: 160 DRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 219

Query: 163 RGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            G C   D   A  L  +M +   ++PNVV ++ I+D L K+G+  +A +L   M + G+
Sbjct: 220 DGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI 279

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            P+ FTYN +++GFC +GR + A+ L   M
Sbjct: 280 SPNLFTYNCMINGFCSSGRWSEAQRLLREM 309



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 53/283 (18%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI-------- 78
           + M   P  + SF I++ C          LS F ++   G  P L T S L+        
Sbjct: 102 MEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDR 161

Query: 79  -----------------------NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK- 114
                                  N  C+ GRV     +L R++     P+ +T+ +++  
Sbjct: 162 VSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 221

Query: 115 VCK---------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +CK                     P+ + Y+ IIDGL K G    A+ LF +M++K + P
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+ TY  +I GFC +  W+EA+RL  EM ++ + P+VVTF+V+++ L K GK  EA  L 
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  G+ P+  TYN+++DGF    R++ A+ +F  M + GC
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGC 384



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 21/255 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+       +LF  +   G+ P+L+T++ +I
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMI 290

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK--------------------- 117
           N FC  GR S    +L  +     +PDVVTF+ LI                         
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII 350

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ITYN++IDG  KQ  +D A+ +F  M  K   P+V+T++ +I G+C A   ++  +L
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM  +G+  N +T+  ++   C+ G ++ A  LL  MI  GV P+  T NTLLDG C 
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 238 TGRVNHAKELFVSME 252
            G++  A E+F  M+
Sbjct: 471 NGKLKDALEMFKVMQ 485



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 25/242 (10%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P V +F+I++      K  D  + L   ++  GL  +  T++ LI+ FC++
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G ++    +L  ++ S   P+VV              T NT++DGLC  G +  A E+F 
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVV--------------TCNTLLDGLCNNGKLKDALEMFK 482

Query: 145 KMKDK-----------NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            M+             +V+P+V TY  +I G      ++EA+ L+ EM  +G+ P+ +T+
Sbjct: 483 VMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITY 542

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N ++D LCK  ++DEA+ + D M   G  PD  T+ TL++G+C  GRV    E+F  M  
Sbjct: 543 NSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGR 602

Query: 254 MG 255
            G
Sbjct: 603 RG 604



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++  L     +     L++ +   GL PD  T++ +I+  CK  R+     +
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQM 561

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +    F+PDVVTFT              T+I+G CK G V    E+F +M  + +  
Sbjct: 562 FDSMGSKGFSPDVVTFT--------------TLINGYCKVGRVGDGLEVFCEMGRRGIVA 607

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY ++I GFC   + N A  +F EM+  GV P+ +T   ++  L    ++  A   L
Sbjct: 608 NAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 133/245 (54%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  +L  L         L+LF ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA  L D M+  G+ P+  TY++++DGFC   R++ A+ +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 141/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G+I +    PDVVTFT+L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 14/237 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I
Sbjct: 238 ALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMI 297

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             FC  GR S    +L  +L    +PDVVT              YN +I+   K+G   +
Sbjct: 298 VGFCSSGRWSDAEQLLQEMLERKISPDVVT--------------YNALINAFVKEGKFFE 343

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+EL+ +M  + + PN +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN ++D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C   ++D+   LL  M + G+  D  TYNTL+ GF L G +N A +L   M S G
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++      K  D  + L   +  TGL  D  T++ LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 CGFRKVGNINGALDIFQEMISSG 646



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 21/179 (11%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAI-----------------TYNTIIDGLCKQGF 135
           +LRS   P VV F  L+ V     +PD +                 ++N +I   C    
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSK 129

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A   F K+    + P+VVT+T+++ G C  +  +EA  LF +M +   +PNVVTF  
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +M+ LC+ G++ EA +LLD M++ G++P   TY T++DG C  G    A  L   ME +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 668 KRAVAMLE 675



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +FN+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+ TLL G C+  RV+ A  LF  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 24/252 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L    + P V ++N+++    K+   D  L +  R+N   + PD+ T++ ++   C  G
Sbjct: 117 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 173

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
           ++     VL R L+    PDV+T+T LI                     K  KPD +TYN
Sbjct: 174 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 233

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+G+CK+G +D+A +    M     +PNV+T+  ++R  C    W +A++L  +M+ +
Sbjct: 234 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 293

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+VVTFN++++ LC+ G +  A  +L+ M  HG  P++ +YN LL GFC   +++ A
Sbjct: 294 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 353

Query: 245 KELFVSMESMGC 256
            E    M S GC
Sbjct: 354 IEYLDIMVSRGC 365



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 18/229 (7%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L +N   +      + +   G  PD+   + LI  FC++G+      V+  + +S   PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 106 VVTFTSLIK-VCK-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           V+T+  LI   CK                 PD +TYNTI+  LC  G + +A E+  +  
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            K   P+V+TYT +I   C  +   +A +L  EM ++G +P+VVT+NV+++ +CK G++D
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           EA   L+ M  +G +P+  T+N +L   C TGR   A++L   M   GC
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC 295



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           MH   P   S+N +L    K K  D  +     + S G +PD+ T++ L+   CK G+V 
Sbjct: 327 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 386

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
               +L ++                K C P  ITYNT+IDGL K G  ++A +L  +M+ 
Sbjct: 387 VAVEILNQLSS--------------KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR 432

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           K +KP+++TY+S++ G       +EA + F ++   G++PN +T+N IM  LCK+ + D 
Sbjct: 433 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDR 492

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           A   L  MI    +P   TY  L++G    G    A +L   + S G
Sbjct: 493 AIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R   S P V ++N+++  + K    D  +     + S G  P++ TH+I+
Sbjct: 212 QAMKLLDEM-RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 270

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C  GR      +L  +LR              K C P  +T+N +I+ LC+QG + 
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLR--------------KGCSPSVVTFNILINFLCRQGLLG 316

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  KM      PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++
Sbjct: 317 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 376

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK+GK+D A  +L+ +   G  P   TYNT++DG    G+   A +L   M   G
Sbjct: 377 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 434



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + NI+L  +     +     L   +   G  P + T +ILIN  C+ G +     +
Sbjct: 262 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 321

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++     TP+ +++  L+                     + C PD +TYNT++  LCK
Sbjct: 322 LEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A E+  ++  K   P ++TY +VI G         A +L  EM  +G++P+++T
Sbjct: 382 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  L + GK+DEA      +   G+RP+A TYN+++ G C + + + A +    M 
Sbjct: 442 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMI 501

Query: 253 SMGC 256
           S  C
Sbjct: 502 SKRC 505


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 136/261 (52%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+     M R     P V ++N ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 282 PKEAIGFLKKM-RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYC 340

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------------- 115
            L+  +   G +     +L  ++R+   PD   F  LI       KV             
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQH 400

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TY  +I  LCK G VD A   F +M D+ + PN++ YTS+I   C  + W++A
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKA 460

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L +EM+D+G+  N + FN I+   CK G++ E+  L DLM++ GV+P+  TY+TL+DG
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDG 520

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +CL G+++ A +L  SM S+G
Sbjct: 521 YCLAGKMDEATKLLSSMFSVG 541



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)

Query: 18  EALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           E   + D M+R  +HP       FNI++   AK +  D  + +F ++   GL P++ T+ 
Sbjct: 354 EMHALLDLMVRNGIHPDH---HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYG 410

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPD--------------- 119
            +I   CK G V    +   +++    TP+++ +TSLI  +C  D               
Sbjct: 411 AVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 120 -----AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                 I +N+II   CK+G V ++++LF  M    VKPNV+TY+++I G+C A   +EA
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L   M   G++P+ VT+N +++  C+  +MD+A +L   M+  GV P+  TYN +L G
Sbjct: 531 TKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 590

Query: 235 FCLTGRVNHAKELFVSMESMG 255
              T R   AKEL+V +   G
Sbjct: 591 LFHTRRTAAAKELYVGITKSG 611



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 27/274 (9%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            D+   +P  A+  ++ M R       P V ++ I++GC  +    D   +    +   G
Sbjct: 58  ADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKG 117

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK-VC-------- 116
              +  T + L+   C   R S    +VL R+      PDV + T L+K +C        
Sbjct: 118 FRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA 177

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                           PD ++Y T+I+G  K+G  DKA   + +M D+ + P+VVTY+S+
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I   C     ++A  +   M+  GV PN +T+N I+   C + +  EA   L  M   GV
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+      PD+++ +IL+   C   R      +L  +   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   PD +TY++II  LCK   +
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V PN +TY S++ G+C +    EA     +M   GV+P+VVT+N +
Sbjct: 248 DKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSL 307

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           MD LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F  M R H   P V ++  ++G L K+   D  +  F+++   GL P++  ++ 
Sbjct: 388 DEAMLVFSKM-RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 446

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  C   +      ++  +L      + + F S+I                       
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ ITY+T+IDG C  G +D+A +L   M    +KP+ VTY ++I G+C  +  ++A 
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  GV PN++T+N+I+  L    +   A  L   + + G + +  TYN +L G 
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 236 CLTGRVNHAKELFVSM 251
           C     + A  +F ++
Sbjct: 627 CKNNLTDEALRMFQNL 642



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 59/271 (21%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK--MDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKP- 118
           LIN +C++ R+     +   ++ S  +P+++T+  +++                 + K  
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 119 ---DAITYNTIIDGLCKQ-----------------------------------GFVDKAK 140
              +  TYN I+ GLCK                                    G  D+AK
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF  +    + P+V TY+ +           E   LF+ M + G   N    N I+ +L
Sbjct: 672 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 731

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            + G +  A + L ++ +     +A T + L
Sbjct: 732 LQRGDITRAGTYLSMIDEKHFSLEASTASLL 762


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 24/252 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L    + P V ++N+++    K+   D  L +  R+N   + PD+ T++ ++   C  G
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 230

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
           ++     VL R L+    PDV+T+T LI                     K  KPD +TYN
Sbjct: 231 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 290

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+G+CK+G +D+A +    M     +PNV+T+  ++R  C    W +A++L  +M+ +
Sbjct: 291 VLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK 350

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+VVTFN++++ LC+ G +  A  +L+ M  HG  P++ +YN LL GFC   +++ A
Sbjct: 351 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 410

Query: 245 KELFVSMESMGC 256
            E    M S GC
Sbjct: 411 IEYLDIMVSRGC 422



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 18/229 (7%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L +N   +      + +   G  PD+   + LI  FC++G+      V+  + +S   PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 106 VVTFTSLIK-VCK-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           V+T+  LI   CK                 PD +TYNTI+  LC  G + +A E+  +  
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            K   P+V+TYT +I   C  +   +A +L  EM ++G +P+VVT+NV+++ +CK G++D
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           EA   L+ M  +G +P+  T+N +L   C TGR   A++L   M   GC
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC 352



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           MH   P   S+N +L    K K  D  +     + S G +PD+ T++ L+   CK G+V 
Sbjct: 384 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 443

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
               +L ++                K C P  ITYNT+IDGL K G  ++A +L  +M+ 
Sbjct: 444 VAVEILNQLSS--------------KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR 489

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           K +KP+++TY+S++ G       +EA + F ++   G++PN +T+N IM  LCK+ + D 
Sbjct: 490 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDR 549

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           A   L  MI    +P   TY  L++G    G    A +L   + S G
Sbjct: 550 AIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 596



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R   S P V ++N+++  + K    D  +     + S G  P++ TH+I+
Sbjct: 269 QAMKLLDEM-RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 327

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C  GR      +L  +LR              K C P  +T+N +I+ LC+QG + 
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLR--------------KGCSPSVVTFNILINFLCRQGLLG 373

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  KM      PN ++Y  ++ GFC     + A      M+ +G  P++VT+N ++
Sbjct: 374 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 433

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK+GK+D A  +L+ +   G  P   TYNT++DG    G+   A +L   M   G
Sbjct: 434 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 491



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + NI+L  +     +     L   +   G  P + T +ILIN  C+ G +     +
Sbjct: 319 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 378

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++     TP+ +++  L+                     + C PD +TYNT++  LCK
Sbjct: 379 LEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 438

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A E+  ++  K   P ++TY +VI G         A +L  EM  +G++P+++T
Sbjct: 439 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 498

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  L + GK+DEA      +   G+RP+A TYN+++ G C + + + A +    M 
Sbjct: 499 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMI 558

Query: 253 SMGC 256
           S  C
Sbjct: 559 SKRC 562


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +   M R +   P V ++N ++  L K        +LF  +   G  PD +T++ 
Sbjct: 96  DEALRLLAEM-RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNS 154

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI    K+GR      +L  + R    PDV+T++SLI                     + 
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD+IT+  ++D L K G VD A EL  +MK++ VKP VVTY ++I GF    D  EA 
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM   G +P+VVT++ ++  L K  ++DEA  +L  M + G  PD  TYNTL++G 
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G +N A  LF  M+S GC
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGC 355



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  M R    P  ++ F  ++  L K    D  L L   +   G+ P + T++ L
Sbjct: 202 KAFKLFQEMKRRGRKPDSIT-FTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNAL 260

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF----TSLIKV-----------------C 116
           I  F K+G +   + +L  + R+   PDVVT+    T LIK                  C
Sbjct: 261 IAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC 320

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYNT+I+GL K G ++ A  LF +MK K   P+VVTY+++I     A     A  
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM   G+QP++ T+  I+  L K G++D+A  L   M   G+ PD  TYN  L+   
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR   A+++F  M+  G
Sbjct: 441 RGGRFKEARKIFEDMKESG 459



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ + + M R H  PP V +++ ++  L K+        LF+ +   G  PD  T + 
Sbjct: 166 QKAMELLEEMER-HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTA 224

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KV----------------- 115
           L++   K GRV     +L  +      P VVT+ +LI    KV                 
Sbjct: 225 LMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNG 284

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKPD +TY+ +I GL K   +D+A ++  KM+ +   P+ +TY ++I G   A   N+A 
Sbjct: 285 CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG 344

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RLF  M  +G  P+VVT++ ++  L K  +++ A  L + M   G++PD FTY +++   
Sbjct: 345 RLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVL 404

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G+V+ A  LF  M   G
Sbjct: 405 GKAGQVDDADRLFSEMRGKG 424



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL + D M +     P V ++N ++    K        +L   +   G  PD+ T+S 
Sbjct: 236 DDALELLDEM-KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC 294

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI    K  ++     VL ++ +    PD +T+ +LI                     K 
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY+T+I  L K   V+ A  LF +M+   ++P++ TY S+I     A   ++A 
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDAD 414

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RLF EM  +G+ P+V+T+N  ++ L + G+  EA  + + M + G+ PD  TY+ LL G 
Sbjct: 415 RLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGL 474

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             T  V+ A  L   +   GC
Sbjct: 475 SKTKEVDDACGLLKELIEQGC 495



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 15/229 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++  PSP  V ++N +L  LAK    +    LF+ L +    PD+ ++S LIN   + G+
Sbjct: 1   MKGFPSPN-VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGK 59

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                 V+  +                K CKP+  TYNT++D L K G  D+A  L  +M
Sbjct: 60  WEAALEVVAEMQ--------------AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           +D    P+V TY  +I     A   +EA  LF EM ++G  P+  T+N ++  L K G+ 
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +A  LL+ M +HG  PD  TY++L+ G    G    A +LF  M+  G
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M R +   P V +++ ++  L K    D    + K++   G  PD  T++ L
Sbjct: 272 EAYNLLDEMKR-NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN   K G ++    +  R+      PDVVT+++LI                        
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI 390

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  TY +II  L K G VD A  LF +M+ K + P+V+TY + +        + EA++
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK 450

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M + G+ P+V T++ ++  L K  ++D+A  LL  +I+ G   D+  ++  L+   
Sbjct: 451 IFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILT 510

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V+ A EL     S G
Sbjct: 511 SWGNVDEAHELLQFANSKG 529



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L K    +    LF R+ S G  PD+ T+S LI    K  RV    V
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 93  VLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLC 131
           +   +      PD+ T+ S+I V                       PD ITYN  ++ L 
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G   +A+++F  MK+  + P+V TY +++ G     + ++A  L  E+++QG   + +
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSL 500

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            F+  ++ L   G +DEA  LL      G+ P A +YN L+D     GRV+ A      +
Sbjct: 501 KFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDL 560

Query: 252 ESMG 255
           +  G
Sbjct: 561 KEQG 564



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P++ T++ L+N   K G+     ++   +  + +TPDVV+              Y+ +I+
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVS--------------YSCLIN 52

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L + G  + A E+  +M+ K  KPN+ TY +++     A  ++EA RL  EM D G  P
Sbjct: 53  SLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVP 112

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V T+N ++  L K G++ EA +L   M + G  PD FTYN+L+ G    GR   A EL 
Sbjct: 113 DVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172

Query: 249 VSMESMGC 256
             ME  GC
Sbjct: 173 EEMERHGC 180



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E+ C+    +      P + ++  ++  L K    D    LF  +   GL PD+ T++  
Sbjct: 376 ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAF 435

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +N   + GR      +   +  S   PDV T+ +L+                     + C
Sbjct: 436 LNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGC 495

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D++ ++  ++ L   G VD+A EL      K + P   +Y ++I     A   +EA  
Sbjct: 496 AFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFN 555

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              ++ +QG +P++V+++ ++  L + G++D A  LL+ M + G++    +Y+ L+
Sbjct: 556 TLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 21/195 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++N  L  L +   +     +F+ +  +GL PD+ T+  L+    K   
Sbjct: 420 MRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKE 479

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNT 125
           V     +L  ++      D + F   +++                       P A +YN 
Sbjct: 480 VDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNA 539

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +ID L K G V +A      +K++  KP++V+Y+S+I         + A  L  EM  +G
Sbjct: 540 LIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRG 599

Query: 186 VQPNVVTFNVIMDEL 200
           ++ +  +++ ++ +L
Sbjct: 600 LKLSPRSYSNLVRKL 614


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 25/263 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL IF   +      P + ++N ++  L K+      + LF+ L   G  PD+ T++ LI
Sbjct: 199 ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLI 258

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  CK G +     + G +      P+VVT++ LI  +CK                    
Sbjct: 259 DSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 318

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNE 173
             P+ ITYN+ +DGLCKQ    +A EL   ++D +  V P+ VT++++I G C     +E
Sbjct: 319 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDE 378

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F +M+  G  PNV+T+N +++ LCK  KM+ A ++++ M+  GV PD  TY+ L+D
Sbjct: 379 ACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 438

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            FC   RV+ A EL   M S GC
Sbjct: 439 AFCKASRVDEALELLHGMASRGC 461



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 30/252 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++  L K+   +  +++ + +   G  PD+ T++ LI+  CK G +     +
Sbjct: 705 PDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRL 764

Query: 94  LG----RILRSCFTPDVVTFTSLIK-VCK----------------------PDAITYNTI 126
            G    R+ R C  P+VVT++ LI  +CK                      P+ ITYN+ 
Sbjct: 765 HGDMSSRVSRCC-VPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSF 823

Query: 127 IDGLCKQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +DGLCKQ  + +A EL   ++D +  V P+ VT++++I G C     +EA  +F +M+  
Sbjct: 824 LDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAG 883

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  PNVVT+NV+M+ LCK  KM+ A ++++ M+  GV PD  TY+ L+D FC    V+ A
Sbjct: 884 GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEA 943

Query: 245 KELFVSMESMGC 256
            EL   M S GC
Sbjct: 944 LELLHGMASRGC 955



 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K    +    L   ++S    P++ T+S+LIN  CK+GR+     +
Sbjct: 249 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAREL 308

Query: 94  LGRILR-SC-FTPDVVTFTSLIK-VCK----------------------PDAITYNTIID 128
           +  + R SC   P+++T+ S +  +CK                      PD +T++T+ID
Sbjct: 309 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 368

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK G +D+A  +F  M      PNV+TY +++ G C A+    A  +   M+D+GV P
Sbjct: 369 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 428

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V+T++V++D  CK  ++DEA  LL  M   G  P+  T+N+++DG C + R   A ++F
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMF 488

Query: 249 VSM 251
             M
Sbjct: 489 DDM 491



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 143/294 (48%), Gaps = 56/294 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P V ++N ++  L K    +   ++ + +   G+ PD+ T+S+
Sbjct: 377 DEACSVFDDMI-AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 435

Query: 77  LINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           L++ FCK  RV     +L G   R C TP+VVTF S+I  +CK                 
Sbjct: 436 LVDAFCKASRVDEALELLHGMASRGC-TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALK 494

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN----------------------- 150
               PD ITY T+IDGL + G   +A+ L   M D +                       
Sbjct: 495 HGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQV 554

Query: 151 --------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                   + P+ VT+  +I G C A ++ +A  LF EM+ + +QP+V+TF  ++D LCK
Sbjct: 555 YNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 614

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            G+++ A  +LDLM   GV P+  TYN L+ G C +GR+  A +    M S GC
Sbjct: 615 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGC 668



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 15/237 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +++ ML +   P  V+ FNI++    K  +++   +LF+ + +  L PD+ T   
Sbjct: 549 SRALQVYNRMLELELVPDKVT-FNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 607

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK G+V                 D++     + V  P+ +TYN ++ GLCK G +
Sbjct: 608 LIDGLCKAGQVEA-------------ARDILDLMGNLGV-PPNVVTYNALVHGLCKSGRI 653

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +   +M      P+ +TY S++   C A+  ++A +L  E+   G  P+ VT+N++
Sbjct: 654 EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNIL 713

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +D L K+G+ ++A ++L+ M+  G  PD  TYNTL+D  C  G +  A+ L   M S
Sbjct: 714 VDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS 770



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 127/246 (51%), Gaps = 28/246 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST---GLFPDLYTHSILINCFCKMGRVSHG 90
           P V ++N ++  L K    +    L   ++S       P++ T+S+LIN  CK+GR+   
Sbjct: 740 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799

Query: 91  FVVLGRILR-SC-FTPDVVTFTSLIK-VCK----------------------PDAITYNT 125
             ++  ++R SC   P+++T+ S +  +CK                      PD +T++T
Sbjct: 800 RELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFST 859

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGLCK G  D+A  +F  M      PNVVTY  ++ G C  +    A  +   M+D+G
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+V+T++V++D  CK   +DEA  LL  M   G  P+  T+N+++DG C + +   A 
Sbjct: 920 VTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAF 979

Query: 246 ELFVSM 251
           ++F  M
Sbjct: 980 QMFDDM 985



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 28/245 (11%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            P V ++++++  L K    D    L + +   S  + P++ T++  ++  CK   ++   
Sbjct: 778  PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEAC 837

Query: 92   VVLGRILRSC---FTPDVVTFTSLIK-VCK--------------------PDAITYNTII 127
             ++ R LR      +PD VTF++LI  +CK                    P+ +TYN ++
Sbjct: 838  ELM-RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLM 896

Query: 128  DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            +GLCK   +++A  +   M DK V P+V+TY+ ++  FC A+  +EA  L   M  +G  
Sbjct: 897  NGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCT 956

Query: 188  PNVVTFNVIMDELCKNGKMDEASSLLDLM-IQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PNVVTFN I+D LCK+ +  EA  + D M ++HG+ PD  TY TL+DG   TG    A+ 
Sbjct: 957  PNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEV 1016

Query: 247  LFVSM 251
            L  +M
Sbjct: 1017 LLDAM 1021



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 18/239 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +FD M   H   P   ++  ++  L +        +L   +      PD Y  + 
Sbjct: 482 GEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNC 537

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            IN   K+G VS    V  R+L     PD VTF              N +I G CK G  
Sbjct: 538 CINGLSKLGDVSRALQVYNRMLELELVPDKVTF--------------NILIAGACKAGNF 583

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A  LF +M  KN++P+V+T+ ++I G C A     A+ +   M + GV PNVVT+N +
Sbjct: 584 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 643

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCK+G+++EA   L+ M+  G  PD+ TY +L+   C   R + A +L   ++S G
Sbjct: 644 VHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 702



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 32/249 (12%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +EA  +FD M+      P V ++N+++  L K    +   ++ + +   G+ PD+ T+S+
Sbjct: 871  DEACNVFDDMI-AGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSV 929

Query: 77   LINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            L++ FCK   V     +L G   R C TP+VVTF S+I  +CK                 
Sbjct: 930  LVDAFCKASHVDEALELLHGMASRGC-TPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLK 988

Query: 118  ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                PD ITY T+IDGL + G+  +A+ L   M D    P+   +   I G     D   
Sbjct: 989  HGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLGD--- 1041

Query: 174  AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              R    M++  + P+ VTFN+++   CK G  ++AS+L + M+   ++PD  T+  L+D
Sbjct: 1042 VSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 1101

Query: 234  GFCLTGRVN 242
            G C  G+V 
Sbjct: 1102 GLCKAGQVE 1110



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 60/293 (20%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS------- 75
           +D+   +      + SFN  L  L K+      + LF+        P+ +T+S       
Sbjct: 98  YDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATY 157

Query: 76  ---------------------------ILINCFCKMGRVSHGFVVL-GRILRSCFTPDVV 107
                                      I++   C+ G  +    +  G + R    P +V
Sbjct: 158 KAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIV 217

Query: 108 TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           T+ ++I  +CK                    PD +TYNT+ID LCK G +++A+ L   M
Sbjct: 218 TYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 277

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDELCKNG 204
             ++  PNVVTY+ +I G C     +EA+ L  EM  +   V PN++T+N  +D LCK  
Sbjct: 278 SSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS 337

Query: 205 KMDEASSLLDLMIQHGVR--PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              EA  L+  +    +R  PD  T++TL+DG C  G+++ A  +F  M + G
Sbjct: 338 MTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGG 390



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 114/270 (42%), Gaps = 52/270 (19%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMGRVSHGF 91
            P + ++N  L  L K         L + L    L   PD  T S LI+  CK G+     
Sbjct: 815  PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 92   VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
             V   ++   + P+VVT+  L+  +CK                    PD ITY+ ++D  
Sbjct: 875  NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 131  CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPN 189
            CK   VD+A EL   M  +   PNVVT+ S+I G C ++   EA ++F +M +  G+ P+
Sbjct: 935  CKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPD 994

Query: 190  VVTFNVIMDELCKNGKMDEASSLLDLM----------------------------IQHGV 221
             +T+  ++D L + G   +A  LLD M                            ++  +
Sbjct: 995  KITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELEL 1054

Query: 222  RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             PD  T+N L+ G C  G    A  LF  M
Sbjct: 1055 VPDKVTFNILIAGACKAGNFEQASALFEEM 1084


>gi|449468061|ref|XP_004151740.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like, partial [Cucumis sativus]
          Length = 147

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 103/155 (66%), Gaps = 11/155 (7%)

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
            GL PDL+T +IL NC C + RVS G   +  ILR  + PD+VT+ +LIK          
Sbjct: 4   AGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKG--------- 54

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
             + GLCK G  D+AKE+F +MK + + PNV++Y+S++ GFC A    E+KRLF EM+DQ
Sbjct: 55  --LYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 112

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           GVQPN+V FNV++D LCK GK+ EA  LL++ IQ 
Sbjct: 113 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQR 147



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF---CYANDWNEA 174
           PD  T N + + LC    V +       +  +   P++VTY ++I+G    C     +EA
Sbjct: 8   PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEA 67

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K +F EM  QG+ PNV++++ ++   C  GK++E+  L + M+  GV+P+   +N L+D 
Sbjct: 68  KEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDI 127

Query: 235 FCLTGRVNHAKELF 248
            C  G+V  AK+L 
Sbjct: 128 LCKEGKVIEAKKLL 141



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL---CK 202
           M+   + P++ T   +    C  N  +E       ++ +G  P++VT+N ++  L   CK
Sbjct: 1   MRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCK 60

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G  DEA  + + M   G+ P+  +Y++L+ GFC  G++  +K LF  M   G
Sbjct: 61  VGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQG 113



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 17/155 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN---CFCK 83
           +R+    P + + NI+  CL         L+    +   G  PD+ T++ LI      CK
Sbjct: 1   MRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCK 60

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +G       +   +      P+V++++SL              + G C  G ++++K LF
Sbjct: 61  VGHEDEAKEIFEEMKAQGMIPNVISYSSL--------------VHGFCCAGKLEESKRLF 106

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
            +M D+ V+PN+V +  +I   C      EAK+L 
Sbjct: 107 NEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLL 141



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGC--LAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +E L     +LR    P  V+   ++ G   L K  H D    +F+ + + G+ P++ ++
Sbjct: 27  SEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISY 86

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S L++ FC  G++     +   ++     P++V F              N +ID LCK+G
Sbjct: 87  SSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQF--------------NVLIDILCKEG 132

Query: 135 FVDKAKELF 143
            V +AK+L 
Sbjct: 133 KVIEAKKLL 141


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 141/257 (54%), Gaps = 23/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  MLR  P  P V  F  ++G + + +  D V+SL++++    +  D+Y+ +I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI CFC   ++       G+I +    PDVVTFT+L+                       
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +T+ T+++GLC++G + +A  L  +M +  ++P  +TY +++ G C   D   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L  +M +   + PNVV ++ I+D LCK+G+  +A +L   M + G+ PD FTYN+++ G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR + A++L   M
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 131/245 (53%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  +L  L         L  F ++  T   P++ T + L+N  C+ GR+     +
Sbjct: 147 PDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P  +T+ +++  +CK                     P+ + Y+ IID LC
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF +M++K + P++ TY S+I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N +++   K GK  EA  L D M+  G+ P+  TY++++DGFC   R++ A+ +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 252 ESMGC 256
            + GC
Sbjct: 387 ATKGC 391



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L K+  +    +LF  +   G+FPDL+T++ +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L    +PDVVT              YN +I+   K+G   +A+EL+ +M  + + P
Sbjct: 313 LQEMLERKISPDVVT--------------YNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN ++D  C   ++D+   LL
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL 418

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+  D  TYNTL+ GF L G +N A +L   M S G
Sbjct: 419 HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++      K  D  + L   +  TGL  D  T++ LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   PD+VT  +L+  +C                           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  +  +
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 564 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M S G
Sbjct: 624 CGFRKVGNINGALDIFQEMISSG 646



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 21/179 (11%)

Query: 97  ILRSCFTPDVVTFTSLIKVC----KPDAI-----------------TYNTIIDGLCKQGF 135
           +LRS   P VV F  L+ V     +PD +                 ++N +I   C    
Sbjct: 70  MLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSK 129

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A   F K+    + P+VVT+T+++ G C  +  +EA   F +M +   +PNVVTF  
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +M+ LC+ G++ EA +LLD M++ G++P   TY T++DG C  G    A  L   ME +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T+S +I+  CK  R
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 607

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EM+  GV P+ +T   ++  L    ++
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 668 KRAVAMLE 675



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ A +LF  M      P+VV +  ++         +    L+ +M  + ++ ++ +FN+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  A S    + + G+ PD  T+ TLL G C+  RV+ A + F  M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 256 C 256
           C
Sbjct: 180 C 180


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 140/258 (54%), Gaps = 25/258 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M+R   SP  ++ FN ++  L K    +    +   +   G +P++ T++ LI+ +
Sbjct: 217 VYKEMIRRKISPNLIT-FNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY 275

Query: 82  CKMGRVSHGF---VVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           CKMGRV   +    +L  ++ +  +P+ VTF  LI                     +  K
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK 335

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  +TYN++++GLC +G +++AK L  +M   N+KPNV+TY ++I G+C      EA+ L
Sbjct: 336 PTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEAREL 395

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  +  QG+ PNV+TFN ++   CK GKM+EA  L  +M++ G  P+A TYN L+ GFC 
Sbjct: 396 FDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCR 455

Query: 238 TGRVNHAKELFVSMESMG 255
            G++   K L   M+  G
Sbjct: 456 EGKMEEVKNLLNEMQCRG 473



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  I   M+    SP  V+ FN+++    K+++    L +F+ + S GL P + T++ L
Sbjct: 286 KADAILKEMVENKVSPNSVT-FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           +N  C  G+++   V+L  +L S   P+V+T+ +LI   CK                   
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ IT+NT++ G CK G +++A  L   M +K   PN  TY  +I GFC      E K 
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN 464

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  +GV+ + VT+N+++   C+  +  +A+ L+D M+  G++P   TYN LL+G+C
Sbjct: 465 LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC 524

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G +  A  L   ME  G
Sbjct: 525 MEGNLRAALNLRKQMEKEG 543



 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D ML  +  P  V ++N ++    K K  +    LF  +   GL P++ T + 
Sbjct: 355 NEAKVLLDEMLSSNLKPN-VITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNT 413

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +CK G++   F++   +L   F P+              A TYN +I G C++G +
Sbjct: 414 LLHGYCKFGKMEEAFLLQKVMLEKGFLPN--------------ASTYNCLIVGFCREGKM 459

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++ K L  +M+ + VK + VTY  +I  +C   +  +A RL  EM+D+G++P+ +T+N++
Sbjct: 460 EEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNIL 519

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C  G +  A +L   M + G   +  TYN L+ G+C  G++  A  L   M   G
Sbjct: 520 LNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKG 578



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 81/142 (57%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   ++ N ++  L K+      + ++ +M  + + PN++T+ +VI G C     N+A  
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGD 251

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +  +M   G  PNVVT+N ++D  CK    GKM +A ++L  M+++ V P++ T+N L+D
Sbjct: 252 VVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           GFC    ++ A ++F  M+S G
Sbjct: 312 GFCKDENLSAALKVFEEMQSQG 333



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 124 NTIIDGLCKQGFVDKAK-----ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           N+II  +    +V+ +K     E F +  D   K +V++   ++      N++   + ++
Sbjct: 159 NSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVY 218

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM+ + + PN++TFN +++ LCK GK+++A  ++D M   G  P+  TYNTL+DG+C  
Sbjct: 219 KEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKM 278

Query: 239 GRV 241
           GRV
Sbjct: 279 GRV 281


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 139/268 (51%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  ++  P EA+     M R     P V ++N ++  L KN        +F  +   GL 
Sbjct: 275 GYCSSEQPKEAIGFLKKM-RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLE 333

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------ 115
           PD+ T+  L+  +   G +     +L  ++R+   PD   F  LI       KV      
Sbjct: 334 PDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     P+ +TY  +I  LCK G VD A   F +M D+ + PN++ YTS+I   C 
Sbjct: 394 FSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCI 453

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            + W++A+ L +EM+D+G+  N + FN I+   CK G++ E+  L DLM++ GV+P+  T
Sbjct: 454 FDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVIT 513

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVG 541



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)

Query: 18  EALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           E   + D M+R  +HP       FNI++   AK +  D  + +F ++   GL P++ T+ 
Sbjct: 354 EMHALLDLMVRNGIHPDH---HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYG 410

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPD--------------- 119
            +I   CK G V    +   +++    TP+++ +TSLI  +C  D               
Sbjct: 411 AVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 120 -----AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                 I +N+II   CK+G V ++++LF  M    VKPNV+TY+++I G+C A   +EA
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L   M   G++P+ VT+N +++  C+  +MD+A +L   M+  GV P+  TYN +L G
Sbjct: 531 TKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 590

Query: 235 FCLTGRVNHAKELFVSMESMG 255
              T R   AKEL+V +   G
Sbjct: 591 LFHTRRTAAAKELYVGITKSG 611



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 27/274 (9%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            D+   +P  A+  ++ M R       P V ++ I++GC  +    D   +    +   G
Sbjct: 58  ADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKG 117

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK-VC-------- 116
              +  T + L+   C   R S    +VL R+      PDV + T L+K +C        
Sbjct: 118 FRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA 177

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                           PD ++Y T+I+G  K+G  DKA   + +M D+ + P+VVTY+S+
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I   C     ++A  +   M+  GV PN +T+N I+   C + +  EA   L  M   GV
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGV 297

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+      PD+++ +IL+   C   R      +L  +   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   PD +TY++II  LCK   +
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V PN +TY S++ G+C +    EA     +M   GV+P+VVT+N +
Sbjct: 248 DKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSL 307

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           MD LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YT- 73
           +EA+ +F  M R H   P V ++  ++G L K+   D  +  F+++   GL P++  YT 
Sbjct: 388 DEAMLVFSKM-RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 446

Query: 74  --HSI------------------------------LINCFCKMGRVSHGFVVLGRILRSC 101
             HS+                              +I+  CK GRV     +   ++R  
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 102 FTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCKQGFVDKAK 140
             P+V+T+++LI   C                    KPD +TYNT+I+G C+   +D A 
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M    V PN++TY  +++G  +      AK L++ +   G Q  + T+N+I+  L
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CKN   DEA  +   +    ++ +  T+N ++      GR + AK+LFV+  S G
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNG 681



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 59/273 (21%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK--MDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKP- 118
           LIN +C++ R+     +   ++ S  +P+++T+  +++                 + K  
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 119 ---DAITYNTIIDGLCKQ-----------------------------------GFVDKAK 140
              +  TYN I+ GLCK                                    G  D+AK
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF+      + PN  TY  +           E  +LF  M D G   +    N I+ EL
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVREL 731

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            + G++  A + L ++ +     +A T +  +D
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 25/263 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL IF   +      P + ++N ++  L K+      + LF+ L   G  PD+ T++ LI
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  CK G +     + G +      P+VVT++ LI  +CK                    
Sbjct: 80  DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 139

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNE 173
             P+ ITYN+ +DGLCKQ    +A EL   ++D +  V P+ VT++++I G C     +E
Sbjct: 140 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDE 199

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F +M+  G  PNV+T+N +++ LCK  KM+ A ++++ M+  GV PD  TY+ L+D
Sbjct: 200 ACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 259

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            FC   RV+ A EL   M S GC
Sbjct: 260 AFCKASRVDEALELLHGMASRGC 282



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 12/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P V ++N ++  L K    +   ++ + +   G+ PD+ T+S+
Sbjct: 198 DEACSVFDDMI-AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 256

Query: 77  LINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           L++ FCK  RV     +L G   R C TP+V+          PD +T+N +I G CK G 
Sbjct: 257 LVDAFCKASRVDEALELLHGMASRGC-TPNVLV---------PDKVTFNILIAGACKAGN 306

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            ++A  LF +M  KN++P+V+T+ ++I G C A     A+ +   M + GV PNVVT+N 
Sbjct: 307 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LCK+G+++EA   L+ M+  G  PD+ TY +L+   C   R + A +L   ++S G
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 426



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 125/251 (49%), Gaps = 28/251 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINCFCKMGRVSHGF 91
           P + ++N  L  L K         L + L    L   PD  T S LI+  CK G++    
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            V   ++   + P+V+T+ +L+  +CK                    PD ITY+ ++D  
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNV-----VTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           CK   VD+A EL   M  +   PNV     VT+  +I G C A ++ +A  LF EM+ + 
Sbjct: 262 CKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 321

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +QP+V+TF  ++D LCK G+++ A  +LDLM   GV P+  TYN L+ G C +GR+  A 
Sbjct: 322 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 381

Query: 246 ELFVSMESMGC 256
           +    M S GC
Sbjct: 382 QFLEEMVSSGC 392



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 30/248 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K    +    L   ++S G  P++ T+S+LIN  CK+GR+     +
Sbjct: 70  PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEAREL 129

Query: 94  LGRILR-SC-FTPDVVTFTSLIK-VCK----------------------PDAITYNTIID 128
           +  + R SC   P+++T+ S +  +CK                      PD +T++T+ID
Sbjct: 130 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 189

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK G +D+A  +F  M      PNV+TY +++ G C A+    A  +   M+D+GV P
Sbjct: 190 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 249

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-----VRPDAFTYNTLLDGFCLTGRVNH 243
           +V+T++V++D  CK  ++DEA  LL  M   G     + PD  T+N L+ G C  G    
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309

Query: 244 AKELFVSM 251
           A  LF  M
Sbjct: 310 ASALFEEM 317



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 35/265 (13%)

Query: 19  ALCIFDYMLRMHP---------SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--- 66
            LC  D M R H            P V ++++++    K    D  L L   + S G   
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284

Query: 67  --LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------ 117
             L PD  T +ILI   CK G       +   ++     PDV+TF +LI  +CK      
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344

Query: 118 --------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
                         P+ +TYN ++ GLCK G +++A +   +M      P+ +TY S++ 
Sbjct: 345 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 404

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             C A+  ++A +L  E+   G  P+ VT+N+++D L K+GK ++A ++L+ M+  G +P
Sbjct: 405 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 464

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELF 248
           D+FT+     G   +G +    EL 
Sbjct: 465 DSFTFAACFSGLHRSGNLAGTMELL 489



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 123 YNTIIDGLCKQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           YN ++  LC+ G   +A E+F  +M    V P +VTY ++I G C +ND      LF E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +++G  P+VVT+N ++D LCK G ++EA  L   M   G  P+  TY+ L++G C  GR+
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 242 NHAKELFVSMESMGC 256
           + A+EL   M    C
Sbjct: 124 DEARELIQEMTRKSC 138



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSP----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +EAL +   M     +P    P   +FNI++    K  +++   +LF+ + +  L PD+ 
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 327

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
           T   LI+  CK G+V     +L  +      P+VVT+ +L+                   
Sbjct: 328 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
               C PD+ITY +++  LC+    D A +L  ++K     P+ VTY  ++ G   +   
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKT 447

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A  +  EM+ +G QP+  TF      L ++G +     LL +++  G+ PDA T +++
Sbjct: 448 EQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 507

Query: 232 LDGFCLTGRVNHAKELFVSME 252
           LD  C +G+++  K +    E
Sbjct: 508 LDWVCRSGKLDDVKAMIKEFE 528


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+         D    L   +    + PD YT++ LI   C  GR  +  VV
Sbjct: 122 PDVMAYNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVV 178

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR    PDVVT+T L+                     K C PD ITYN +++G+C+
Sbjct: 179 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQ 238

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD A E    +     +PN V+Y  V++G C A  W +A++L  EM  +G  PNVVT
Sbjct: 239 EGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVT 298

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++  LC+ G ++ A  +LD + ++G  P++ +YN +L  FC   +++ A      M 
Sbjct: 299 FNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 358

Query: 253 SMGC 256
           S GC
Sbjct: 359 SRGC 362



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 21/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L  H   P   S+NI+L  L   + ++    L   ++  G  P++ T ++LI+  C+ G 
Sbjct: 252 LPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGL 311

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     VL +I +   TP+ +++  ++                     + C PD ++YNT
Sbjct: 312 VEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNT 371

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  LC+ G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G
Sbjct: 372 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKG 431

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +QP+++T++ I   LC+  +++EA      +   G+RP+   YN +L G C     ++A 
Sbjct: 432 LQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAI 491

Query: 246 ELFVSMESMGC 256
           +LF+ M S GC
Sbjct: 492 DLFIYMISNGC 502



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 25/246 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-- 90
           PP V +FN+++  L +    +  + +  ++   G  P+  +++ +++ FCK  ++     
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
           FV L  + R C+ PD+V++ +L+                     K C P  I+YNT+IDG
Sbjct: 353 FVEL-MVSRGCY-PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 410

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K G   +A EL  +M  K ++P+++TY+++  G C  +   EA R F ++ D G++PN
Sbjct: 411 LTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPN 470

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            V +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G V  A+EL  
Sbjct: 471 TVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLG 530

Query: 250 SMESMG 255
            + S G
Sbjct: 531 ELCSRG 536



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 57/293 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D MLR     P V ++ I+L    K   Y   + L   + + G  PD+ T+++++
Sbjct: 175 ALVVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 79  NCFCKMGRV-----------SHGFV------------------------VLGRILRSCFT 103
           N  C+ GRV           SHG                          ++  + +  + 
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP 293

Query: 104 PDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKEL 142
           P+VVTF  LI                       C P++++YN I+   CKQ  +D+A   
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 353

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              M  +   P++V+Y +++   C   + + A  L  ++ D+G  P ++++N ++D L K
Sbjct: 354 VELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 413

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GK  EA  LL+ M+  G++PD  TY+T+  G C   R+  A   F  ++ MG
Sbjct: 414 AGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMG 466



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSF-NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +TPN  L      +   P+  P  +  N  L  L +    +  L L + +  +GL P   
Sbjct: 36  LTPNSRLNFAHAGVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPSAA 93

Query: 73  TH--SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
               + LI   C  GR +    VL                     C+PD + YN ++ G 
Sbjct: 94  PGPCAALIKKLCASGRTAEARRVLA-------------------ACEPDVMAYNAMVAGY 134

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G +D A+ L   + D  ++P+  TY ++IRG C       A  +  +M+ +G  P+V
Sbjct: 135 CVTGQLDAARRL---VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDV 191

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+ ++++  CK     +A  LLD M   G  PD  TYN +++G C  GRV+ A E   S
Sbjct: 192 VTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKS 251

Query: 251 MESMGC 256
           + S GC
Sbjct: 252 LPSHGC 257



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 21/205 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N +L    K K  D  ++  + + S G +PD+ +++ L+   C+ G V     +L ++
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 392

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                TP ++++ ++I                     K  +PD ITY+TI  GLC++  +
Sbjct: 393 KDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRI 452

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F K++D  ++PN V Y +++ G C   + + A  LFI M+  G  PN  T+ ++
Sbjct: 453 EEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTIL 512

Query: 197 MDELCKNGKMDEASSLLDLMIQHGV 221
           ++ L   G + EA  LL  +   GV
Sbjct: 513 IEGLTYEGLVKEARELLGELCSRGV 537



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 21/151 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  L K       L L   + + GL PD+ T+S + +  C+  R+      
Sbjct: 399 PVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRA 458

Query: 94  LGRILRSCFTPDVVTFTS-LIKVCK--------------------PDAITYNTIIDGLCK 132
             ++      P+ V + + L+ +CK                    P+  TY  +I+GL  
Sbjct: 459 FCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTY 518

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
           +G V +A+EL  ++  + V    +   + IR
Sbjct: 519 EGLVKEARELLGELCSRGVVSKGLINKAAIR 549


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 133/241 (55%), Gaps = 26/241 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN +L  L         L LF ++      P++ T + L+N  C+ GRV     +
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P+ +T+ +++  +CK                     PD + Y+ IIDGL 
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLW 163

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF++M+DK + P++VTY+ +I GFC +  W+EA+RL  EM+ + + P+VV
Sbjct: 164 KDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVV 223

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF+ +++ L K G ++ A  LL  MI  GV P+  T NTLLDG C +G++  A E+F +M
Sbjct: 224 TFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283

Query: 252 E 252
           +
Sbjct: 284 Q 284



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FPD+ T+S +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VC 116
           N FC  G+ S    +L  +L    +PDVVTF+ LI                       VC
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----------NVKPNVVTYTSVIRGF 165
            P+ +T NT++DGLC  G +  A E+F  M+              V+P+V TY  +I G 
Sbjct: 255 -PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                + EA+ L+ EM  +G+ P+ VT++ +++ LCK  ++DEA+ + D M      P+ 
Sbjct: 314 INEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNI 373

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            T+NTL+ G+C  G V+   ELF  M   G
Sbjct: 374 VTFNTLITGYCKAGMVDDGLELFCEMGRRG 403



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 26/245 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  + SFNI++ C          LS F +L   G  P L T + L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +  ++ +    P+VVTFT+L+  +C+                    P+ ITY TI+DG+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K G    A  L  KM++  ++KP+VV Y+++I G        +A+ LFIEM D+G+ P++
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDI 187

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ +++  C +GK  EA  LL  M+   + PD  T++ L++     G +N A++L   
Sbjct: 188 VTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQE 247

Query: 251 MESMG 255
           M S G
Sbjct: 248 MISSG 252



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++  L K    ++   L + + S+G+ P++ T + L++  C  G++     +
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +S    D    T      +PD  TYN +I GL  +G   +A+EL+ +M  + + P
Sbjct: 280 FKAMQKSMMDIDA---THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY+S+I G C  +  +EA ++F  M  +   PN+VTFN ++   CK G +D+   L 
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+  +A TY TL+ GF   G +N + ++F  M S G
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 133/241 (55%), Gaps = 26/241 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN +L  L         L LF ++      P++ T + L+N  C+ GRV     +
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R++     P+ +T+ +++  +CK                     PD + Y+ IIDGL 
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLW 163

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A+ LF++M+DK + P++VTY+ +I GFC +  W+EA+RL  EM+ + + P+VV
Sbjct: 164 KDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVV 223

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF+ +++ L K G ++ A  LL  MI  GV P+  T NTLLDG C +G++  A E+F +M
Sbjct: 224 TFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283

Query: 252 E 252
           +
Sbjct: 284 Q 284



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M  +    P V  ++ ++  L K+  +    +LF  +   G+FPD+ T+S +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VC 116
           N FC  G+ S    +L  +L    +PDVVTF+ LI                       VC
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----------NVKPNVVTYTSVIRGF 165
            P+ +T NT++DGLC  G +  A E+F  M+              V+P+V TY  +I G 
Sbjct: 255 -PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                + EA+ L+ EM  +G+ P+ VT++ +++ LCK  ++DEA+ + D M      P+ 
Sbjct: 314 INEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNI 373

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            T+NTL+ G+C  G V+   ELF  M   G
Sbjct: 374 VTFNTLITGYCKAGMVDDGLELFCEMGRRG 403



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 26/245 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  + SFNI++ C          LS F +L   G  P L T + L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +  ++ +    P+VVTFT+L+  +C+                    P+ ITY TI+DG+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K G    A  L  KM++  ++KP+VV Y+++I G        +A+ LFIEM D+G+ P++
Sbjct: 128 KMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDI 187

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ +++  C +GK  EA  LL  M+   + PD  T++ L++     G +N A++L   
Sbjct: 188 VTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQE 247

Query: 251 MESMG 255
           M S G
Sbjct: 248 MISSG 252



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++  L K    ++   L + + S+G+ P++ T + L++  C  G++     +
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +S    D    T      +PD  TYN +I GL  +G   +A+EL+ +M  + + P
Sbjct: 280 FKAMQKSMMDIDA---THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY+S+I G C  +  +EA ++F  M  +   PN+VTFN ++   CK G +D+   L 
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+  +A TY TL+ GF   G +N + ++F  M S G
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 143/296 (48%), Gaps = 58/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M+RM P P  V  F+ +   +   KHY  V+SLF+ +   G+       +I
Sbjct: 44  DDAVSLFHRMVRMKPLPS-VIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------K 114
           + N +C   R+   F VL   L++    +VVTF +L+                      K
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 115 VC-----------------------------------KPDAITYNTIIDGLCKQGFVDKA 139
           +C                                   KPD  TY+ +ID LCK   +D A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L  +MK KN+ PN+ TY S+I G C    W + K L  EM++  + PNV TF++++D 
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK GK+++A  ++  MI+ GV PD  TY+ ++DG+CL G+V+ A+ +F  +   G
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG 338



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 140/259 (54%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  ++R     P    +  ++  L+K  H +  LSL + +      PD+ T+SI+
Sbjct: 150 DAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIV 209

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK   +     +L  + +    P++ T+ SLI  +CK                   
Sbjct: 210 IDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNI 269

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T++ +IDGLCK+G V+ A E+   M +K V+P+++TY++++ G+C     + A+R
Sbjct: 270 NPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARR 329

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  + D+G++PN+ +++++++  CK   + +A  L   + Q G++PD  TY+T+L G  
Sbjct: 330 VFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLI 389

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  AK++F  M  +G
Sbjct: 390 EVGRIGDAKKIFDEMLRVG 408



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 134/242 (55%), Gaps = 21/242 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V +++I++  L K+ + D  ++L   +    + P+++T++ LI+  CK+G+     
Sbjct: 199 TKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVK 258

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +L  ++     P+V TF+ LI                     K  +PD ITY+ I+DG 
Sbjct: 259 TLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGY 318

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C +G VD+A+ +F  ++DK +KPN+ +Y+ +I G+C   +  +A +LF E+  +G++P+ 
Sbjct: 319 CLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDT 378

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ I+  L + G++ +A  + D M++ G  PD   ++TLL G+   G V  A  LF  
Sbjct: 379 VTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSK 438

Query: 251 ME 252
           +E
Sbjct: 439 LE 440



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+I++  L K    +    + + +   G+ PD+ T+S +++ +C  G+V     V
Sbjct: 271 PNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRV 330

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P++ +++ LI                     K  KPD +TY+TI+ GL +
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  AK++F +M      P++  +++++ G+       EA  LF ++       N+  
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISF 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V+++ LCKN ++ EA ++ + +   G+ PD  TYN ++ GFC  G  +  K +   ME
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKME 510

Query: 253 SMGC 256
             GC
Sbjct: 511 DNGC 514



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 21/229 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR     P + S++I++    K K+    + LF  ++  GL PD  T+S +++   ++G
Sbjct: 333 VLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVG 392

Query: 86  RVSHGFVVLGRILRSCFTPDV--------------------VTFTSLIKVCKPDAIT-YN 124
           R+     +   +LR   TPD+                    + F+ L +  +   I+ Y 
Sbjct: 393 RIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYT 452

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK   V +A  +F K+    + P+V TY  +I GFC    ++E K +  +M D 
Sbjct: 453 VVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDN 512

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           G   N +T+NVIM    ++ K+ E  S +  M   G   DA T   L++
Sbjct: 513 GCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLIN 561



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IFD MLR+ P+P       ++ G   K    +  + LF +L       ++  ++++
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYF-KYGLVEEAMLLFSKLERNREDTNISFYTVV 454

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN  CK  RV     +  ++      P +     LI    PD  TYN +I G C++G  D
Sbjct: 455 INGLCKNDRVREAHAIFEKL------PSI----GLI----PDVRTYNVMITGFCREGLFD 500

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           + K +  KM+D     N +TY  +++GF  +N  +E      EM  +G   +  T  V++
Sbjct: 501 EVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLI 560

Query: 198 DELCKNGKMDEASSLLDLMIQH 219
           + L +N       S++D++  H
Sbjct: 561 NVLKEN------PSIVDMIPDH 576



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF +M      P+V+ ++ + +       ++    LF EM   G+  +    N+
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + +  C   ++D A S+L + ++ G+  +  T+NTLL G     +V  A  LF
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLF 155


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    PD VT              Y T+I  LCK G V+
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--------------YGTVIGILCKSGRVE 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I   C  + W++AK L +EM+D+G+  + + FN I+
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L DLM++ GV+PD  TY+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 28/258 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK    D  + +F ++   GL PD  T+  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCK 117
             CK GRV        +++    +P  + + SLI                       +C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC- 476

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D I +N+IID  CK+G V ++++LF  M    VKP+++TY+++I G+C A   +EA +L
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++P+ VT+N +++  CK  +M++A  L   M   GV PD  TYN +L G   
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 597 TRRTAAAKELYVGITESG 614



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 29/267 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLY 72
             +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L 
Sbjct: 35  AEDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLC 92

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T+ ILI   C  GR+  GF  LG +++  F  D + FT L+K                  
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 115 ----VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYA 168
                C P+  +YN ++ GLC +    +A EL   M D   +  P+VV+YT+VI GF   
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D ++A   + EM+D+G+ PNVVT++ I+  LCK   MD+A  +L  M+++GV P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N+++ G+C +G+   A      M S G
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 12/215 (5%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L      
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQ----- 186

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVVTY+S
Sbjct: 187 -MMPDDGGD------CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGL 130
                +L     P+VVT++S+I  +CK  A+                    TYN+I+ G 
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G   +A     KM    V+P+VVTY S++   C      EA+++F  M  +G++P +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+  ++      G + E   LLDLM+++G+ P+ + ++ L+  +   G+V+ A  +F  
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 251 MESMG 255
           M   G
Sbjct: 400 MRQQG 404



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ M+    SP  +  +N ++  L     +D    L   +   G+  D    + +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           I+  CK GRV     +   ++R    PD++T+++LI   C                    
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +TYNT+I+G CK   ++ A  LF +M+   V P+++TY  +++G         AK 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L++ + + G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++    
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 665

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR + AK+LF ++ + G
Sbjct: 666 KVGRNDEAKDLFAALSANG 684



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNT 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 600

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ + +   +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN++
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G+ DEA  L   +  +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 661 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGC 720



 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++NI+L  L KN   D  L +F+ L  T L  +  T +I+I    K+GR      +  
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 678

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +  +   PDV T              Y+ + + L +QG +++  +LFL M++     N 
Sbjct: 679 ALSANGLVPDVRT--------------YSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
               S++R      D   A      + ++       T ++ +D L   GK  E  S
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD-LLSGGKYQEYHS 779


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 139/296 (46%), Gaps = 56/296 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL   + M       P   +FN+++  L+K  H    L +   +   G  PD+YT++ 
Sbjct: 282 EEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNS 341

Query: 77  LINCFCKMGRVSHGFVVLGRIL-RSC---------------------------------- 101
           LI+  CK+G V     VL +++ R C                                  
Sbjct: 342 LISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKG 401

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PDV T+ SLI                     K C PD  TYN +ID LC +G + +A 
Sbjct: 402 ILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEAL 461

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L  +M+      NV+TY ++I GFC      EA+ +F +M  QGV  N VT+N ++D L
Sbjct: 462 NLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGL 521

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK+ +++EAS L+D MI  G+RPD FTYN+LL  FC  G +  A ++  +M S GC
Sbjct: 522 CKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGC 577



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L  ++++   + L+K + + G  PD +T+++LI+  C  G++     +
Sbjct: 404 PDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNL 463

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  S               C  + ITYNT+IDG CK   + +A+E+F +M+ + V  
Sbjct: 464 LKEMEVSG--------------CARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSR 509

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY ++I G C +    EA +L  +M+ +G++P+  T+N ++   CK G + +A+ ++
Sbjct: 510 NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIV 569

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M   G  PD  TY TL+ G C  GRV  A +L  +++  G
Sbjct: 570 QTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKG 611



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS+FNI++  L +       + L + +   GL PD  T + ++  F + G +     V
Sbjct: 193 PDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRV 252

Query: 94  LGRILRS-CFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLC 131
             +++ + C   +V     +   CK                     PD  T+N +++GL 
Sbjct: 253 KEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLS 312

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G V  A E+   M  +   P++ TY S+I G C   + +EA ++  +M+++   PN V
Sbjct: 313 KTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTV 372

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N I+  LCK  +++EA+ L  ++   G+ PD  TYN+L+ G CL+     A EL+  M
Sbjct: 373 TYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEM 432

Query: 252 ESMGC 256
           ++ GC
Sbjct: 433 KTKGC 437



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L         L+L K +  +G   ++ T++ LI+ FCK  R++    +
Sbjct: 439 PDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEI 498

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++     + + VT+ +LI  +CK                    PD  TYN+++   CK
Sbjct: 499 FDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCK 558

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA ++   M     +P++VTY ++I G C A     A +L   +  +G+      
Sbjct: 559 AGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHA 618

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           +N ++  L +  +  EA  L   MI+    PDA TY  +  G C  G
Sbjct: 619 YNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGG 665



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 36/176 (20%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  T+N +I  LC+   +  A  L  +M+D  + P+  T+T++++GF    + + A R
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251

Query: 177 L----------------------------------FIEMMD--QGVQPNVVTFNVIMDEL 200
           +                                  FIE M   +G  P+  TFN++++ L
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGL 311

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K G +  A  ++D+M++ G  PD +TYN+L+ G C  G V+ A ++   M    C
Sbjct: 312 SKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDC 367



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 25/249 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M     S   V+ +N ++  L K++  +    L  ++   GL PD +T++ L
Sbjct: 494 EAEEIFDQMELQGVSRNSVT-YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------- 121
           +  FCK G +     ++  +      PD+VT+ +LI  +CK   +               
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 122 -----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAK 175
                 YN +I  L ++    +A  LF +M +K   P+ VTY  V RG C       EA 
Sbjct: 613 NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAV 672

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
              +EM+++G  P   +F ++ + L     +     L+D++++     D     T++ GF
Sbjct: 673 DFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDNEV--TMIRGF 730

Query: 236 CLTGRVNHA 244
               +   A
Sbjct: 731 LKISKYQDA 739



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N ++DG  K   V+ A      M  + ++P+V T+  +I+  C A+    A  L  EM D
Sbjct: 168 NVLVDG-NKLKLVEIAHS---NMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMED 223

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            G+ P+  TF  IM    + G +D A  + + M++ G      T N L++GFC  GR+  
Sbjct: 224 FGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEE 283

Query: 244 AKELFVSM 251
           A      M
Sbjct: 284 ALRFIEEM 291



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 44/76 (57%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G++P+V TFN+++  LC+  ++  A  L++ M   G+ PD  T+ T++ GF   G 
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245

Query: 241 VNHAKELFVSMESMGC 256
           ++ A  +   M   GC
Sbjct: 246 LDGAMRVKEQMVEAGC 261



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV---IRGFCYANDWNE 173
           KP +  +  ++  L K G  D  K++  +MK   +  +V+   S+   I  +     +NE
Sbjct: 86  KPSSSIFKEVLHKLGKAGEFDAMKDILKEMK---ISLSVIDNDSLLVFIESYASFGLYNE 142

Query: 174 AKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
             + F++ M+   GV  N   +N +++ L    K+         M+  G+RPD  T+N L
Sbjct: 143 ILQ-FVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNIL 201

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           +   C   ++  A  L   ME  G
Sbjct: 202 IKALCRAHQIRPAILLMEEMEDFG 225


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 154/349 (44%), Gaps = 111/349 (31%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK--NKHYDTVLSLFKRLNSTGLFPDLYTH 74
           ++A+  F  MLRM+PSP  +  FN +LG L K  N +Y   +SL+ RL    + P + T 
Sbjct: 28  HDAISSFYRMLRMNPSPSIIE-FNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTF 86

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
           + +INC+C +G +   F VL +IL+  + PD +T T+LIK                    
Sbjct: 87  NTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIA 146

Query: 115 ----------------VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
                           +CK                     + + Y+TIID LCK+  V +
Sbjct: 147 RGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTE 206

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A EL+ +M  K V P+VVT++++I GFC    + EA  LF EM+   + P+V TFN+++D
Sbjct: 207 AYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVD 266

Query: 199 ELCKNGK----------------------------------------------------M 206
            LCK G                                                     +
Sbjct: 267 ALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMV 326

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           DEA SL + M   G+ PD  TY++L+DG C + R++HA EL   M + G
Sbjct: 327 DEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARG 375



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 47/281 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  ++  M+    SP  V+   ++ G C+     +     LF  +  T + PD+ T +I
Sbjct: 206 EAYELYSQMIVKKVSPDVVTFSALIYGFCMVG--QFKEAFGLFHEMVLTNINPDVCTFNI 263

Query: 77  LINCFCKMG--------------------RVSHGFVVLGRILRSCFTPDVVTFTSLIK-V 115
           L++  CK G                    +  H F ++G+      TPDV ++T +IK +
Sbjct: 264 LVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGK---RRVTPDVHSYTIIIKRL 320

Query: 116 CK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           CK                    PD +TY+++IDGLCK   +  A EL  +M  +    +V
Sbjct: 321 CKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADV 380

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TYTS +   C  +  ++A  L  ++ DQG+QPN+ T+N+++D LCK G+ + A  +   
Sbjct: 381 ITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQD 440

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  G +   +TYN +++G CL G  + A  L   ME  GC
Sbjct: 441 LLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGC 481



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ I++  L K K  D  LSLF  +   G+ PD  T+S LI+  CK  R+SH + +
Sbjct: 308 PDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWEL 367

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++       DV+T+TS +                LCK   VDKA  L  K+KD+ ++P
Sbjct: 368 LDQMHARGQPADVITYTSFLH--------------ALCKNHQVDKAVALVKKIKDQGIQP 413

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+ TY  +I G C    +  A+ +F +++ +G +  V T+N++++ LC  G  DEA +LL
Sbjct: 414 NINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLL 473

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M  +G  PD  TY T++         + A++L   M + G
Sbjct: 474 EKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARG 515



 Score = 38.1 bits (87), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK--NGKMDEASSLLDLMIQHGVRPDAFT 227
           D ++A   F  M+     P+++ FN I+  L K  N     A SL   +  + + P   T
Sbjct: 26  DVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVT 85

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +NT+++ +C  G ++ A  +   +  MG
Sbjct: 86  FNTVINCYCHLGEMDFAFSVLAKILKMG 113


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 24/261 (9%)

Query: 15  TPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           + N AL + D   +M        V  ++I++  L K+  +D  LSLF  +   G+  D+ 
Sbjct: 223 SGNSALAL-DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
           T+S LI   C  G+   G  +L  ++     PDVVTF++LI V                 
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD ITYN++IDG CK+  + +A ++F  M  K  +P++VTY+ +I  +C A   
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++  RLF E+  +G+ PN +T+N ++   C++GK++ A  L   M+  GV P   TY  L
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461

Query: 232 LDGFCLTGRVNHAKELFVSME 252
           LDG C  G +N A E+F  M+
Sbjct: 462 LDGLCDNGELNKALEIFEKMQ 482



 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++            ++L  R+      PDL T S LIN  C  GRVS   V+
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           + R++   F PD VT+  ++ ++CK                       + Y+ +ID LCK
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A  LF +M+ K +K +VVTY+S+I G C    W++  ++  EM+ + + P+VVT
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+ ++D   K GK+ EA  L + MI  G+ PD  TYN+L+DGFC    ++ A ++F  M 
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377

Query: 253 SMGC 256
           S GC
Sbjct: 378 SKGC 381



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL++     I  I  N+A+ +F+ M++  P P P+  FN +   +A+ K YD VL   K
Sbjct: 40  ERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPID-FNRLCSAVARTKQYDLVLGFCK 94

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
            +   G+  D+YT +I+INC+C+  ++   F VLGR  +  + PD +TF+          
Sbjct: 95  GMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFS---------- 144

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+++G C +G V +A  L  +M +   +P++VT +++I G C     +EA  L   
Sbjct: 145 ----TLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDR 200

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QP+ VT+  +++ LCK+G    A  L   M +  ++     Y+ ++D  C  G 
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260

Query: 241 VNHAKELFVSMESMG 255
            + A  LF  ME  G
Sbjct: 261 FDDALSLFNEMEMKG 275



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F+ M  M      V +++ ++G L  +  +D    + + +    + PD+ T S 
Sbjct: 262 DDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   ++     PD +T+ SLI                     K 
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD +TY+ +I+  CK   VD    LF ++  K + PN +TY +++ GFC +   N AK
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG------------------------------- 204
            LF EM+ +GV P+VVT+ +++D LC NG                               
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 205 ----KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               K+D+A SL   +   GV+PD  TYN ++ G C  G ++ A  LF  M+  GC
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P + +++I++    K K  D  + LF+ ++S GL P+  T++ 
Sbjct: 367 HEANQMFDLMVS-KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAIT------------- 122
           L+  FC+ G+++    +   ++     P VVT+  L+  +C    +              
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  YN II G+C    VD A  LF  + DK VKP+VVTY  +I G C     +EA 
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M + G  P+  T+N+++        +  +  L++ M   G   D+ T   ++D
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +F  M+     PP V ++ I+L  L  N   +  L +F+++  + +   +  ++I
Sbjct: 437 NAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  C   +V   + +       C   D        K  KPD +TYN +I GLCK+G +
Sbjct: 496 IIHGMCNASKVDDAWSLF------CSLSD--------KGVKPDVVTYNVMIGGLCKKGSL 541

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF KMK+    P+  TY  +IR     +    +  L  EM   G   +  T  ++
Sbjct: 542 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 601

Query: 197 MDELCKNGKMDEASSLLDLM 216
           +D L  + ++D+  S LD++
Sbjct: 602 IDML-SDRRLDK--SFLDML 618


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 24/261 (9%)

Query: 15  TPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           + N AL + D   +M        V  ++I++  L K+  +D  LSLF  +   G+  D+ 
Sbjct: 252 SGNSALAL-DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 310

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
           T+S LI   C  G+   G  +L  ++     PDVVTF++LI V                 
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD ITYN++IDG CK+  + +A ++F  M  K  +P++VTY+ +I  +C A   
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 430

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++  RLF E+  +G+ PN +T+N ++   C++GK++ A  L   M+  GV P   TY  L
Sbjct: 431 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 490

Query: 232 LDGFCLTGRVNHAKELFVSME 252
           LDG C  G +N A E+F  M+
Sbjct: 491 LDGLCDNGELNKALEIFEKMQ 511



 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++            ++L  R+      PDL T S LIN  C  GRVS   V+
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           + R++   F PD VT+  ++ ++CK                       + Y+ +ID LCK
Sbjct: 227 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 286

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A  LF +M+ K +K +VVTY+S+I G C    W++  ++  EM+ + + P+VVT
Sbjct: 287 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 346

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+ ++D   K GK+ EA  L + MI  G+ PD  TYN+L+DGFC    ++ A ++F  M 
Sbjct: 347 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 406

Query: 253 SMGC 256
           S GC
Sbjct: 407 SKGC 410



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL++     I  I  N+A+ +F+ M++  P P P+  FN +   +A+ K YD VL   K
Sbjct: 69  ERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPID-FNRLCSAVARTKQYDLVLGFCK 123

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
            +   G+  D+YT +I+INC+C+  ++   F VLGR  +  + PD +TF+          
Sbjct: 124 GMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFS---------- 173

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+++G C +G V +A  L  +M +   +P++VT +++I G C     +EA  L   
Sbjct: 174 ----TLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDR 229

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QP+ VT+  +++ LCK+G    A  L   M +  ++     Y+ ++D  C  G 
Sbjct: 230 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 289

Query: 241 VNHAKELFVSMESMG 255
            + A  LF  ME  G
Sbjct: 290 FDDALSLFNEMEMKG 304



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F+ M  M      V +++ ++G L  +  +D    + + +    + PD+ T S 
Sbjct: 291 DDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 349

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   ++     PD +T+ SLI                     K 
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD +TY+ +I+  CK   VD    LF ++  K + PN +TY +++ GFC +   N AK
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 469

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG------------------------------- 204
            LF EM+ +GV P+VVT+ +++D LC NG                               
Sbjct: 470 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 529

Query: 205 ----KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               K+D+A SL   +   GV+PD  TYN ++ G C  G ++ A  LF  M+  GC
Sbjct: 530 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 585



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P + +++I++    K K  D  + LF+ ++S GL P+  T++ 
Sbjct: 396 HEANQMFDLMVS-KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAIT------------- 122
           L+  FC+ G+++    +   ++     P VVT+  L+  +C    +              
Sbjct: 455 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 514

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  YN II G+C    VD A  LF  + DK VKP+VVTY  +I G C     +EA 
Sbjct: 515 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 574

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M + G  P+  T+N+++        +  +  L++ M   G   D+ T   ++D
Sbjct: 575 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 632



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +F  M+     PP V ++ I+L  L  N   +  L +F+++  + +   +  ++I
Sbjct: 466 NAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 524

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  C   +V   + +       C   D        K  KPD +TYN +I GLCK+G +
Sbjct: 525 IIHGMCNASKVDDAWSLF------CSLSD--------KGVKPDVVTYNVMIGGLCKKGSL 570

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF KMK+    P+  TY  +IR     +    +  L  EM   G   +  T  ++
Sbjct: 571 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 630

Query: 197 MDELCKNGKMDEASSLLDLM 216
           +D L  + ++D+  S LD++
Sbjct: 631 IDML-SDRRLDK--SFLDML 647


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    PD VT              Y T+I  LCK G V+
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--------------YGTVIGILCKSGRVE 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I   C  + W++AK L +EM+D+G+  + + FN I+
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L DLM++ GV+PD  TY+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 28/258 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK    D  + +F ++   GL PD  T+  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCK 117
             CK GRV        +++    +P  + + SLI                       +C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC- 476

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D I +N+IID  CK+G V ++++LF  M    VKP+++TY+++I G+C A   +EA +L
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++P+ VT+N +++  CK  +M++A  L   M   GV PD  TYN +L G   
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 597 TRRTAAAKELYVGITESG 614



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 29/265 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L T+
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
            ILI   C  GR+  GF  LG +++  F  D + FT L+K                    
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYAND 170
              C P+  +YN ++ GLC +    +A EL   M D   +  P+VV+YT+VI GF    D
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGD 214

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            ++A   + EM+D+G+ PNVVT++ I+  LCK   MD+A  +L  M+++GV P+  TYN+
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++ G+C +G+   A      M S G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 12/215 (5%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM--- 188

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVVTY+S
Sbjct: 189 ---PDDG------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGL 130
                +L     P+VVT++S+I  +CK  A+                    TYN+I+ G 
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G   +A     KM    V+P+VVTY S++   C      EA+++F  M  +G++P +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+  ++      G + E   LLDLM+++G+ P+ + ++ L+  +   G+V+ A  +F  
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 251 MESMG 255
           M   G
Sbjct: 400 MRQQG 404



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ M+    SP  +  +N ++  L     +D    L   +   G+  D    + +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           I+  CK GRV     +   ++R    PD++T+++LI   C                    
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +TYNT+I+G CK   ++ A  LF +M+   V P+++TY  +++G         AK 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L++ + + G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++    
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 665

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR + AK+LF ++ + G
Sbjct: 666 KVGRNDEAKDLFAALSANG 684



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNT 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 600

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ + +   +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN++
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G+ DEA  L   +  +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 661 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGC 720



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++NI+L  L KN   D  L +F+ L  T L  +  T +I+I    K+GR      +  
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 678

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +  +   PDV T              Y+ + + L +QG +++  +LFL M++     N 
Sbjct: 679 ALSANGLVPDVRT--------------YSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
               S++R      D   A      + ++       T ++ +D L   GK  E  S
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD-LLSGGKYQEYHS 779


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 15/228 (6%)

Query: 30   HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVS 88
            H  P  V   N+++  L   +  D+ L LFK +  +G  P D++T+S +++   K G+V 
Sbjct: 906  HGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965

Query: 89   HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
                ++          D+V+     K C P+ +TY++++ GLCK G +D+A  L  +M  
Sbjct: 966  DACRLV---------EDMVS-----KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 1011

Query: 149  KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
                PN+VTY ++I G C     +EA  L  EM+D G QPNVVT+ V++D  CK GK ++
Sbjct: 1012 SGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAED 1071

Query: 209  ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            A  L+++M++ G  P+ FTYN+LLD FC    V  A +L  SM   GC
Sbjct: 1072 AIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 1119



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 14/224 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N M+  L+K+   D  + L + +   G  P++++++ +++ FCK  RV +   
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 286

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L +++               + C PD ++Y T+I+GLCK   VD+A  +  KM  +  +
Sbjct: 287 LLEQMV--------------TRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNV+TY +++ GFC   D + A  L  +M ++G +PN +T+N IM   C+   M+ A  +
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L +MIQ G  PDA  Y+T++ GFC  G++  A +L   M   GC
Sbjct: 393 LQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGC 436



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 14/240 (5%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            + AL +F  M      PP V +++ ++  L K+   D    L + + S G  P++ T+S 
Sbjct: 929  DSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSS 988

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++  CK G++     +L R+ RS               C P+ +TYNTIIDG CK G +
Sbjct: 989  LLHGLCKAGKLDEATALLQRMTRSG--------------CSPNIVTYNTIIDGHCKLGRI 1034

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            D+A  L  +M D   +PNVVTYT ++  FC      +A  L   M+++G  PN+ T+N +
Sbjct: 1035 DEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSL 1094

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +D  CK  +++ A  LL  MIQ G  P+  +YNT++ G C   +V+    L   M S  C
Sbjct: 1095 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNC 1154



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 20/262 (7%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           I P  AL  F++          +   N +L  L K   Y     LF+         D  T
Sbjct: 104 IDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVT 163

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCF--------------------TPDVVTFTSLI 113
           +S LI+ F + G++   + +   + R                       +  V+ F  + 
Sbjct: 164 YSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS 223

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K C PD++TYNT+I+GL K   +D A  L  +M D    PNV +Y +V+ GFC AN    
Sbjct: 224 KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVEN 283

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  L  +M+ +G  P+VV++  +++ LCK  ++DEA  ++D MIQ G +P+  TY TL+D
Sbjct: 284 ALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVD 343

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           GFC  G ++ A EL   M   G
Sbjct: 344 GFCRVGDLDGAVELVRKMTERG 365



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 57/280 (20%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P V S+N ++  L K       + L +++ S    PD+ T + +I+  CK  RV   + +
Sbjct: 1121 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 94   LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
               I  S  TP++VT+ SL+                      + C PD ITYNT+IDGLC
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 132  KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR---------------------------- 163
            K   VD+A +LFL+M    + P+ VTY+ VI                             
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 1300

Query: 164  -------GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                   GFC   + ++A  +   ++ +G  P+VVTF++ +D L K G++ +A  LL+ M
Sbjct: 1301 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 1360

Query: 217  IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            ++ G+ PD  TYNTLL GFC       A +LF  M   GC
Sbjct: 1361 LRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGC 1400



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M+R     P V+  + ++  L K    D+   L +        PD+  +SIL
Sbjct: 423 EAHDLLEQMIR-RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSIL 481

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK  R+      L  ++++   PDVVT+ S++  +CK                   
Sbjct: 482 IHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +TY+ +I   CK   +D A ++  +MK+    P+VVTY+++I G C A   ++A  
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFD 601

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM+  G  PN+VT+N ++D LCK  K+++A+ +L++M +    PD+ TY  L++G C
Sbjct: 602 VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC 661

Query: 237 LTGRVNHAKELFVSMESMGC 256
              R+  A  +   M+  GC
Sbjct: 662 NASRLEEAWRVLREMKDKGC 681



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 22/245 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P V +++ +L  L K    D   +L +R+  +G  P++ T++ +I+  CK+GR+   + +
Sbjct: 981  PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHL 1040

Query: 94   LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
            L  ++     P+VVT+T L+   CK                    P+  TYN+++D  CK
Sbjct: 1041 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 1100

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            +  V++A +L   M  K   PNVV+Y +VI G C A   +E   L  +M+     P++VT
Sbjct: 1101 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVT 1160

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM- 251
            FN I+D +CK  ++D A  L +L+ + G  P+  TYN+L+ G C + R + A+ L   M 
Sbjct: 1161 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 1220

Query: 252  ESMGC 256
               GC
Sbjct: 1221 RKQGC 1225



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 130/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + + M+     PP V S+  ++  L K    D    +  ++   G  P++ T+  L+
Sbjct: 284 ALWLLEQMV-TRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
           + FC++G +     ++ ++    + P+ +T+ +++ V                     C 
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDAI Y+TII G CK G + +A +L  +M  +  +P+V   +++I   C A   + A+ L
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
               +     P+VV +++++  LCK  ++ EA S LD+M+++   PD  TYN+++DG C 
Sbjct: 463 LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522

Query: 238 TGRVNHAKELFVSMESMG 255
           + R+N A  LF  M + G
Sbjct: 523 SRRINDAFLLFDRMRAAG 540



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D M++ +   P V ++N ++  L K++  +    LF R+ + G+ PD+ T+SI+
Sbjct: 493 EAESWLDVMVK-NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIV 551

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FCK   +   F +L R+  +               C PD +TY+ +I+GLCK G VD
Sbjct: 552 IHSFCKDNNLDSAFKMLERMKEA--------------KCVPDVVTYSALINGLCKAGTVD 597

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA ++F +M      PN+VTY ++I G C  N   +A  +   M  Q   P+ +T+  ++
Sbjct: 598 KAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLI 657

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LC   +++EA  +L  M   G  PD  TY TLL     T  +   ++L   ME+
Sbjct: 658 NGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 14/216 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++A  +   M R     P + ++N ++  L K+K  D    LF ++ S GL PD  T+SI
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 1269

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            +I+  CK   +     VL  +L++ F               P AITY T+IDG CK G +
Sbjct: 1270 VISSLCKWRFMDEANNVLELMLKNGF--------------DPGAITYGTLIDGFCKTGNL 1315

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            DKA E+   +  K   P+VVT++  I          +A  L   M+  G+ P+ VT+N +
Sbjct: 1316 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 1375

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            +   C     ++A  L ++M Q G  PD  TY TL+
Sbjct: 1376 LKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 1/142 (0%)

Query: 116  CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            C P+  T+  +I GLC+ G +  A EL  +M    V  NV+ +  VI+G C A   + A 
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 176  RLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM + G   P+V T++ I+D L K+GK+D+A  L++ M+  G  P+  TY++LL G
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 235  FCLTGRVNHAKELFVSMESMGC 256
             C  G+++ A  L   M   GC
Sbjct: 993  LCKAGKLDEATALLQRMTRSGC 1014



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 43/273 (15%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +EA  + + ML+    P  ++ +  ++    K  + D  L + + L S G +PD+ T SI
Sbjct: 1281 DEANNVLELMLKNGFDPGAIT-YGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSI 1339

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
             I+   K GR+     +L  +LR+   PD VT+ +L+K                      
Sbjct: 1340 FIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG 1399

Query: 116  CKPDAITYNTIIDGLC-KQGFVDKAKELFLKMKDK----------------NVKPNVVTY 158
            C+PD  TY T++  L  K+ + D   E+   M D                  V+ +V   
Sbjct: 1400 CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLG 1459

Query: 159  TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             +++  F       +A+++F E MDQ    NVV ++ ++     + + ++A  L  +M  
Sbjct: 1460 CAIVDMFGKCGSPQDARKVF-EGMDQ---RNVVLWSAMLGVYVFHKQEEQAFGLWRVMGL 1515

Query: 219  HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             GV PDA T+ +LL   C  G ++ A + FVS+
Sbjct: 1516 EGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSI 1548



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 60/282 (21%)

Query: 2    RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR 61
            RL+ +GE             + + MLR    P  V+ +N +L         +  + LF+ 
Sbjct: 1349 RLRQAGE-------------LLETMLRAGLVPDTVT-YNTLLKGFCDASLTEDAVDLFEV 1394

Query: 62   LNSTGLFPDLYTHSILINCFCK-------MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            +   G  PD  T++ L+            +  VS   V  G  L    +       + I+
Sbjct: 1395 MRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSS---KLEASIE 1451

Query: 115  VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV----------------------- 151
            V + D      I+D   K G    A+++F  M  +NV                       
Sbjct: 1452 V-EADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLW 1510

Query: 152  --------KPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNVVTFNVIMDELCK 202
                    +P+ VT+ S++   C+A   + A   F+ +  D G++P V  F+ ++D L +
Sbjct: 1511 RVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGR 1570

Query: 203  NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             G ++EA    DLM+    +P A T+N LL  + + G    A
Sbjct: 1571 LGLVNEAE---DLMLGMPCKPSAATWNCLLSAYKICGDFERA 1609


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    PD VT              Y T+I  LCK G V+
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--------------YGTVIGILCKSGRVE 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I   C  + W++AK L +EM+D+G+  + + FN I+
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L DLM++ GV+PD  TY+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 28/258 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK    D  + +F ++   GL PD  T+  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCK 117
             CK GRV        +++    +P  + + SLI                       +C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC- 476

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D I +N+IID  CK+G V ++++LF  M    VKP+++TY+++I G+C A   +EA +L
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++P+ VT+N +++  CK  +M++A  L   M   GV PD  TYN +L G   
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 597 TRRTAAAKELYVGITESG 614



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 29/267 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLY 72
             +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L 
Sbjct: 35  AEDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLC 92

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T+ IL+   C  GR+  GF  LG +++  F  D + FT ++K                  
Sbjct: 93  TYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRR 152

Query: 115 ----VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYA 168
                C P+  +YN ++ GLC      +A EL   M D   +  P+VV+YT+VI GF   
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D ++A   + EM+D+G+ PNVVT++ I+  LCK   MD+A  +L  M+++GV P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N+++ G+C +G+   A      M S G
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 13/219 (5%)

Query: 38  SFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +F  ML G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  
Sbjct: 128 AFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQM 187

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +      PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVV
Sbjct: 188 M------PDDG------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV 235

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY+S+I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              GV PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 16/208 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L  +      L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                +L     P+VVT              Y++II  LCK   +DKA E+   M    V
Sbjct: 220 GTYHEMLDRGILPNVVT--------------YSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            PN  TY S++ G+C +    EA     +M   GV+P+VVT+N +MD LCKNG+  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + D M + G++P+  TY TLL G+   G
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+  F+ M+    SP  +  +N ++  L     +D    L   +   G+  D    + 
Sbjct: 426 EDAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+  CK GRV     +   ++R    PD++T+++LI   C                   
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TYNT+I+G CK   ++ A  LF +M+   V P+++TY  +++G         AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ + + G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++   
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR + AK+LF ++ + G
Sbjct: 665 LKVGRNDEAKDLFAALSANG 684



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNT 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 600

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ + +   +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN++
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G+ DEA  L   +  +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 661 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGC 720



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++NI+L  L KN   D  L +F+ L  T L  +  T +I+I    K+GR      +  
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 678

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +  +   PDV T              Y+ + + L +QG +++  +LFL M++     N 
Sbjct: 679 ALSANGLVPDVRT--------------YSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
               S++R      D   A      + ++       T ++ +D L   GK  E    L
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD-LLSGGKYQEYHRFL 781


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    PD VT              Y T+I  LCK G V+
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--------------YGTVIGILCKSGRVE 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I   C  + W++AK L +EM+D+G+  + + FN I+
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L DLM++ GV+PD  TY+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 28/258 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK    D  + +F ++   GL PD  T+  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCK 117
             CK GRV        +++    +P  + + SLI                       +C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC- 476

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D I +N+IID  CK+G V ++++LF  M    VKP+++TY+++I G+C A   +EA +L
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++P+ VT+N +++  CK  +M++A  L   M   GV PD  TYN +L G   
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 597 TRRTAAAKELYVGITESG 614



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 29/267 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLY 72
             +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L 
Sbjct: 35  AEDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLC 92

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T+ ILI   C  GR+  GF  LG +++  F  D + FT L+K                  
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 115 ----VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYA 168
                C P+  +YN ++ GLC +    +A EL   M D   +  P+VV+YT+VI GF   
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D ++A   + EM+D+G+ PNVVT++ I+  LCK   MD+A  +L  M+++GV P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N+++ G+C +G+   A      M S G
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 12/215 (5%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM--- 188

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVVTY+S
Sbjct: 189 ---PDDG------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGL 130
                +L     P+VVT++S+I  +CK  A+                    TYN+I+ G 
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G   +A     KM    V+P+VVTY S++   C      EA+++F  M  +G++P +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+  ++      G + E   LLDLM+++G+ P+ + ++ L+  +   G+V+ A  +F  
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 251 MESMG 255
           M   G
Sbjct: 400 MRQQG 404



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+  F+ M+    SP  +  +N ++  L     +D    L   +   G+  D    + 
Sbjct: 426 EDAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+  CK GRV     +   ++R    PD++T+++LI   C                   
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TYNT+I+G CK   ++ A  LF +M+   V P+++TY  +++G         AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ + + G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++   
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR + AK+LF ++ + G
Sbjct: 665 LKVGRNDEAKDLFAALSANG 684



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNT 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 600

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ + +   +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN++
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G+ DEA  L   +  +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 661 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGC 720



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++NI+L  L KN   D  L +F+ L  T L  +  T +I+I    K+GR      +  
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 678

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +  +   PDV T              Y+ + + L +QG +++  +LFL M++     N 
Sbjct: 679 ALSANGLVPDVRT--------------YSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
               S++R      D   A      + ++       T ++ +D L   GK  E    L
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD-LLSGGKYQEYHRFL 781


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 57/295 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD ML    SP  V +++I+L    K   Y   ++L   + + G  PD+ T+++L
Sbjct: 269 DALAVFDDMLHRGCSPS-VVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C  G V     +L  +      PD VT+T ++K                      C
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 117 KPDAITYNTI-----------------------------------IDGLCKQGFVDKAKE 141
            PD +T+NTI                                   +DGLC  G VD A E
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE 447

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  ++K    KP+ + YT+V++G C    W  A+ L  EM+     P+ VTFN ++  LC
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G +D A  +++ M ++G  PD  TYN ++DG C    ++ A EL   ++S GC
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGC 562



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 14/226 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +FN ++  L         L++F  +   G  P + T+SIL++  CK       
Sbjct: 246 PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQA 305

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L  +                K C+PD +TYN +I+ +C +G VD+A  +   +    
Sbjct: 306 MALLDEMR--------------AKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            KP+ VTYT V++  C +  W E + L  EM      P+ VTFN I+  LC+ G +D A 
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAI 411

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            ++D M +HG   D  TY+++LDG C  GRV+ A EL   ++S GC
Sbjct: 412 EVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + D+M   H     + +++ +L  L      D  + L  RL S G  PD   ++ 
Sbjct: 408 DRAIEVVDHMSE-HGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 466

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   C   +      ++  +L S   PD VTF +++                       
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG 526

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYN IIDGLC +  +D A EL   ++    KP++VT+ ++++G C  + W +A+
Sbjct: 527 CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAE 586

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L   MM     P+ +TFN ++  LC+ G + +A   L +M ++G  P++ TY+ ++D  
Sbjct: 587 QLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDAL 646

Query: 236 CLTGRVNHAKELFVSM 251
              G+   A EL   M
Sbjct: 647 LKAGKAQAALELLSGM 662



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++  L +    D  + +   ++  G   D+ T+S +++  C +GRV     +
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L R+      PD + +T+++K                      C PD +T+NT++  LC+
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A  +  +M +    P++VTY  +I G C  +  ++A  L  ++   G +P++VT
Sbjct: 509 KGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVT 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++  LC   + ++A  L+  M++    PD  T+NT++   C  G +  A E    M 
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 253 SMGC 256
             GC
Sbjct: 629 ENGC 632



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 27/270 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     +EAL I    L  H   P   ++  +L  L  ++ +  V  L   + S   
Sbjct: 334 EGDV-----DEALNILSN-LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------ 115
            PD  T + ++   C+ G V     V+  +       D+VT++S++              
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE 447

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                    CKPD I Y T++ GLC     ++A+EL  +M   +  P+ VT+ +V+   C
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                + A R+  +M + G  P++VT+N I+D LC    +D+A  LL  +   G +PD  
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV 567

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           T+NTLL G C   R   A++L  +M    C
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNC 597



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L      D  + L   L S G  PD+ T + L+   C + R      +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +  ++RS   PD +TF ++I                       C P++ TY+ ++D L K
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A EL   M   N  P+++TY +VI     A    EA  L   M+  G+ P+  T
Sbjct: 649 AGKAQAALELLSGMT--NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTT 706

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +   +C+    D A  +L  +   G+ PD   YN +L GFC   R + A + F  M 
Sbjct: 707 YRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMV 766

Query: 253 SMGC 256
           S GC
Sbjct: 767 SSGC 770



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 32/221 (14%)

Query: 43  LGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTHSILINCFCKMGRVSHG---FVVLGRI 97
           L  L +    D  L LF  + S G    P +   +ILI   C  GRVS     F  LG  
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALG-- 214

Query: 98  LRSCFTPDVVTFTSLIKVCKPDA--ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                               P A  +TYNT+++G C+ G ++ A+ L   M      P+ 
Sbjct: 215 --------------------PSATVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDT 251

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            T+  +IR  C      +A  +F +M+ +G  P+VVT+++++D  CK     +A +LLD 
Sbjct: 252 FTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDE 311

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G  PD  TYN L++  C  G V+ A  +  ++ S GC
Sbjct: 312 MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGC 352



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 16/223 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++  L +       +   K +   G  P+  T+SI+++   K G+      
Sbjct: 598 PPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALE 657

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +                    PD ITYNT+I  L K G +++A +L   M    + 
Sbjct: 658 LLSGMTNG----------------TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLC 701

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  TY S+  G C  +  + A R+   + D G+ P+   +N ++   C++ + D A   
Sbjct: 702 PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDC 761

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M+  G  PD  TY  LL+     G ++ AK L  S+ S+G
Sbjct: 762 FAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K    +  L L + + S GL PD  T+  L    C+         +
Sbjct: 667 PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRM 726

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+  +  +PD  TF             YN ++ G C+    D A + F  M      P
Sbjct: 727 LRRVQDTGLSPD-TTF-------------YNDVLLGFCRDRRTDLAIDCFAHMVSSGCMP 772

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +  TY  ++    Y    +EAKRL   +   GV
Sbjct: 773 DESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD M+R     P VS++ I++   A       + S    +   GL PD +  +I 
Sbjct: 322 EARFFFDSMIR-KGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIF 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            + + K G +     +  ++ +   +P+VV               Y  +ID LCK G VD
Sbjct: 381 FSAYAKCGMIDKAMDIFNKMRQHGLSPNVVN--------------YGALIDALCKLGRVD 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+  F +M ++ V PN+V + S++ G C  + W  A+ L  EM+DQG+ PN V FN ++
Sbjct: 427 DAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC  G++ E   L+DLM   GVRPDAF+Y  L+ G+CLTGR + A+++F  M S+G
Sbjct: 487 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIG 544



 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 67/305 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK---HYDTVLSLFKRLN---STGLFPD 70
           ++AL +FD +L  H  P  V +FN +L  +++ +     +  +S F R+    S  + P+
Sbjct: 31  DDALKLFDELLH-HARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPN 89

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFT--------------------------- 103
           L T+SILI  FC+MG + HGF   G IL++ +                            
Sbjct: 90  LCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLL 149

Query: 104 ---------PDVVTFTSLIK------------------------VCKPDAITYNTIIDGL 130
                    PD V++T L+K                         C P+ ++Y+ +I+G 
Sbjct: 150 QRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGF 209

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
             +G VDK   LFL+M D+ + P+VVTYT+VI G C A  ++ A+ +F +M+D G +PN 
Sbjct: 210 FTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNN 269

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+N ++      GK  E   +L+ M   G++PD +TY +LL+  C  GR   A+  F S
Sbjct: 270 YTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDS 329

Query: 251 MESMG 255
           M   G
Sbjct: 330 MIRKG 334



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI     AK    D  + +F ++   GL P++  +  LI+  CK+GRV    V 
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 431

Query: 94  LGRILRSCFTPDVVT-----------------------------------FTSLI-KVC- 116
             +++    TP++V                                    F +LI  +C 
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491

Query: 117 -------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                              +PDA +Y  +I G C  G  D+A+++F  M    + P  VT
Sbjct: 492 VGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVT 551

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A+  ++A  LF EM+ +GV P VVT+N I+  L +  +  EA  L   MI
Sbjct: 552 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI 611

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G + D +TYN +L+G C +  V+ A ++F S+ S G
Sbjct: 612 NSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 649



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 26/210 (12%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL----RSCFTPDVVTFTSLI 113
           L +R+   G  PD  +++IL+   C   R      +L  +     R C  P+VV+++ +I
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRC-PPNVVSYSIVI 206

Query: 114 ---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                                +   PD +TY T+IDGLCK    D+A+ +F +M D   K
Sbjct: 207 NGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFK 266

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN  TY  +I G+     W E  ++  EM  +G++P+  T+  +++ LCKNG+  EA   
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            D MI+ G++P   TY  L+ G+   G ++
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALS 356



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           EAL +   M   H    PP V S++I++         D   +LF  +   G+ PD+ T++
Sbjct: 179 EALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYT 238

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            +I+  CK         V  +++ + F P+  T+  LI                     +
Sbjct: 239 TVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSAR 298

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KPD  TY ++++ LCK G   +A+  F  M  K +KP V TY  +I G+      +E 
Sbjct: 299 GLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEM 358

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                 M++ G+ P+   FN+      K G +D+A  + + M QHG+ P+   Y  L+D 
Sbjct: 359 HSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDA 418

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  GRV+ A+  F  M + G
Sbjct: 419 LCKLGRVDDAEVKFNQMINEG 439



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++         D    +F  + S GL P   T++ L++ +C   R+   + +
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCL 571

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +LR   TP VVT              YNTI+ GL +     +AKEL+L M +   K 
Sbjct: 572 FREMLRKGVTPGVVT--------------YNTILHGLFQTKRFSEAKELYLNMINSGTKC 617

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY  ++ G C +N  +EA ++F  +  +G+Q N++TF +++  L K G+ ++A  L 
Sbjct: 618 DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF 677

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +  +G+ P+  TY  + +     G +     LF +ME  G
Sbjct: 678 AAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNG 719



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ++  L     ++    L   +   G+ P+    + LI   C +GRV  G  +
Sbjct: 442 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRL 501

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIIDGLCK 132
           +  +      PD  ++T LI             KV          P  +TYNT++ G C 
Sbjct: 502 IDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCS 561

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A  LF +M  K V P VVTY +++ G      ++EAK L++ M++ G + ++ T
Sbjct: 562 ASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYT 621

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I++ LCK+  +DEA  +   +   G++ +  T+  ++      GR   A +LF ++ 
Sbjct: 622 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 681

Query: 253 SMG 255
           + G
Sbjct: 682 ANG 684



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A C+F  MLR   +P  V ++N +L  L + K +     L+  + ++G   D+YT++I
Sbjct: 566 DDAYCLFREMLRKGVTPG-VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNI 624

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CK   V   F +   +       +++TFT               +I  L K G  
Sbjct: 625 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT--------------IMIGALLKGGRK 670

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A +LF  +    + PNVVTY  V           E   LF  M   G  PN    N +
Sbjct: 671 EDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 730

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +  L   G +  A + L  + +     +A T + L+  F      +HAK L
Sbjct: 731 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSL 781



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDW---NEAKRLFIEMMDQGVQPNVVTFNVIM 197
           EL    +  +V+      T+V R  C +      +   R+  E  D+ V PN+ T+++++
Sbjct: 39  ELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDK-VAPNLCTYSILI 97

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS-MESMGC 256
              C+ G ++   +   L+++ G R D    N LL G C   RV  A ++ +  M  +GC
Sbjct: 98  GRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGC 157


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 145/249 (58%), Gaps = 24/249 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F++M R++   P + +  ++L  LAK++  DTV  ++K++   G+  +++ +++
Sbjct: 153 HEAIQVFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNV 211

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           L++  CK G V     VL  +   C  PD+ T+ +LI + CK                  
Sbjct: 212 LLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAG 271

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TYN++I G C++G + +A +LF  +KD  V PN VTYTS+I G+C  ND +EA 
Sbjct: 272 ISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEAL 329

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M ++G+ P V+T+N I+ +LC+ G++ +A+ LL+ M +  + PD  T NTL++ +
Sbjct: 330 RLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAY 389

Query: 236 CLTGRVNHA 244
           C  G +  A
Sbjct: 390 CKIGDMRSA 398



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 58/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++    K   +   LS+  R+   G+ PD++T++ LI  FC+ GR+    V 
Sbjct: 239 PDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREA-VQ 297

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R ++   TP+ VT+TSLI                     K   P  ITYN+I+  LC+
Sbjct: 298 LFRDIKDV-TPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCE 356

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVT----------------------------------- 157
            G +  A  L  +M ++ ++P+ VT                                   
Sbjct: 357 GGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFT 416

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I GFC A + ++AK L   MMD G  P+  T++ ++D  CK    +    L D ++
Sbjct: 417 YKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELV 476

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G+  D   Y  L+  FC   +++ A+ +   M+  G
Sbjct: 477 RRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKG 514



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D  L L + ++  GL+P + T++ ++   C+ GR+    ++L  +      PD VT  +L
Sbjct: 326 DEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTL 385

Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I                        K D  TY  +I G CK   +DKAKEL   M D   
Sbjct: 386 INAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGF 445

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY+ ++  +C   +     +L  E++ +G+  +V  +  ++   CK  K+D A  
Sbjct: 446 SPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQR 505

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +L LM   G+  D+  Y +L  G+   G+VN   ++   M
Sbjct: 506 VLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEM 545



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 18/245 (7%)

Query: 15  TPNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +P  +  +F ++    P+    + S   ML  L K+KH+ T  +  + +     F D  +
Sbjct: 62  SPCLSWALFKWIESSVPNYKHSLQSSWTMLYILTKHKHFKTAHAFLENIA----FKDFLS 117

Query: 74  HSILINCFCKMGR--------VSHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITY 123
              +++   K+          +S   +V G    S  T + +     ++V   +P     
Sbjct: 118 TQSVLSSLVKIHDDPDVNSHVLSWLVIVYGN---SKMTHEAIQVFEHMRVNGFRPHLHAC 174

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
             +++ L K    D   +++ KM    V  N+  Y  ++   C + D  +A+++  EM  
Sbjct: 175 TVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMEL 234

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           + V P++ T+N ++   CK G   EA S+ D M   G+ PD FTYN+L+ GFC  GR+  
Sbjct: 235 KCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMRE 294

Query: 244 AKELF 248
           A +LF
Sbjct: 295 AVQLF 299



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 15/209 (7%)

Query: 57  SLFKRLNSTGLFPDLYTHSI-----LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
           +LFK + S+   P+ Y HS+     ++    K          L  I    F       +S
Sbjct: 68  ALFKWIESS--VPN-YKHSLQSSWTMLYILTKHKHFKTAHAFLENIAFKDFLSTQSVLSS 124

Query: 112 LIKVCK-PDA----ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           L+K+   PD     +++  I+ G  K     +A ++F  M+    +P++   T ++    
Sbjct: 125 LVKIHDDPDVNSHVLSWLVIVYGNSK--MTHEAIQVFEHMRVNGFRPHLHACTVLLNSLA 182

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                +   +++ +M+  GV  N+  +NV++   CK+G +++A  +L  M    V PD F
Sbjct: 183 KDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLF 242

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNTL+  +C  G    A  +   ME  G
Sbjct: 243 TYNTLISLYCKKGMHYEALSVQDRMEMAG 271


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 160/337 (47%), Gaps = 92/337 (27%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           ++ I  ++A+ +F  M +  P P  +  F+ +L  +AK   +D V+S  +++   G+  +
Sbjct: 54  LSDIELDDAIGLFGVMAQSRPFPSIIE-FSKLLSAIAKMNKFDLVISFGEKMEILGISHN 112

Query: 71  LYTHSILINCFC----------------KMG-------------------RVSHGFVVLG 95
           LYT++ILINCFC                K+G                   R+S    ++ 
Sbjct: 113 LYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVD 172

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           +++   + PD VTFT+LI                     + C+PD +TY  +++GLCK+G
Sbjct: 173 QMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRG 232

Query: 135 -----------------------------------FVDKAKELFLKMKDKNVKPNVVTYT 159
                                                D A  LF +M++K V+PNV+TY+
Sbjct: 233 DTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS 292

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I   C    W++A RL  +M+++ + PN+VTF+ ++D   K GK+ +A  L + MI+ 
Sbjct: 293 SLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR 352

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + P+ FTY++L++GFC+  R+  AK++   M    C
Sbjct: 353 SIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 56/268 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
           ++ ++  L K +H D  L+LF  + + G+ P++ T+S LI+C C  GR S          
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 91  -----------------FVVLGRILRS----------CFTPDVVTFTSLI---------- 113
                            FV  G+++++             P++ T++SLI          
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                      K C P+ +TYNT+I+G CK   VDK  ELF +M  + +  N VTYT++I
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            GF  A D + A+ +F +M+  GV PN++T+N+++D LCKNGK+ +A  + + + +  + 
Sbjct: 436 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 495

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           PD +TYN +++G C  G+       FV+
Sbjct: 496 PDIYTYNIMIEGMCKAGKWKMGGIYFVA 523



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P + ++NI+L  L KN      + +F+ L  + + PD+YT++I+I   CK G+   G
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMG 517


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 27/264 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD ML    SP  V +++I+L    K   Y   + L   + S G  PD+ T+++L
Sbjct: 178 DALAVFDDMLHRGCSPS-VVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C  G V     VL  +      PD VT+T ++K                      C
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA-- 174
            PD +T+N +I  LC++GFV +A ++  +M +    P+++TY+S++ G C     +EA  
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIK 356

Query: 175 --KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             K L  EM+ +   P+ VTFN I+  LC+ G  D A  ++D M +HG  PD  TYN ++
Sbjct: 357 LLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIV 416

Query: 233 DGF-CLTGRVNHAKELFVSMESMG 255
           DGF C + +   A +L   M S G
Sbjct: 417 DGFLCKSCKTEEALDLLNLMVSNG 440



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 28/244 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N M+    +  + D    +   ++S    PD +T++ LI   C  G V     V   +
Sbjct: 130 TYNTMVNGYCRAGNIDAARRM---IDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDM 186

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           L    +P VVT++ L+                     K C+PD +TYN +I+ +C QG V
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ++   +     KP+ VTYT V++  C +  W EA +L  +M      P+ VTFN +
Sbjct: 247 GEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAV 306

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA----KELFVSME 252
           +  LC+ G +  A+ +L  M +HG  PD  TY++++DG C   RV+ A    KEL   M 
Sbjct: 307 ITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMV 366

Query: 253 SMGC 256
           S  C
Sbjct: 367 SKNC 370



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 26/233 (11%)

Query: 28  RMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           R  P PP  S    N  L  L +    D  L L   ++ +G  P +   +ILI   C  G
Sbjct: 51  RTPPKPPARSGGGANRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADG 110

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA--ITYNTIIDGLCKQGFVDKAKELF 143
           RV+    V                   ++   P A  ITYNT+++G C+ G +D A+ + 
Sbjct: 111 RVADAERV-------------------VEALGPSATIITYNTMVNGYCRAGNIDAARRMI 151

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             +      P+  TY  +IR  C      +A  +F +M+ +G  P+VVT+++++D  CK 
Sbjct: 152 DSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKE 208

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               +A  LLD M   G  PD  TYN L++  C  G V  A ++  S+ S GC
Sbjct: 209 SGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGC 261



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 28/242 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++  L +         +  +++  G  PD+ T+S +++  CK  RV     +
Sbjct: 298 PDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKL 357

Query: 94  LGRIL-----RSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTII 127
           L  +L     ++C  PD VTF ++I             KV        C PD  TYN I+
Sbjct: 358 LKELLAEMVSKNCI-PDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIV 416

Query: 128 DG-LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           DG LCK    ++A +L   M    + P+  TY S+  G    ++   A  +F  +   G+
Sbjct: 417 DGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGL 476

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+ + +N I+  LCK  + D A      M+ +G  PD  TY  L++G    G +  AKE
Sbjct: 477 SPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKE 536

Query: 247 LF 248
           L 
Sbjct: 537 LL 538



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 26/210 (12%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYTHSILINCFCKMG 85
           H   P + +++ ++  L K +  D  + L K L     S    PD  T + +I   C+ G
Sbjct: 329 HGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKG 388

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI-----KVCK-----------------PDAITY 123
                  V+  +      PD+ T+  ++     K CK                 PD  TY
Sbjct: 389 LFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTY 448

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
            ++  GL ++  +++A  +F +++   + P+ + Y +++ G C     + A   F  M+ 
Sbjct: 449 KSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVS 508

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            G  P+  T+ ++++ +   G ++EA  LL
Sbjct: 509 NGCMPDESTYIILVEGIAYEGFLEEAKELL 538


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N M+         D    L   +    + PD YT++ LI   C  GR  +   V
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAV 174

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR    PDVVT+T L+                     K C PD +TYN +++G+C+
Sbjct: 175 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQ 234

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD A E    +     +PN V+Y  V++G C A  W +A++L  EM  +G  PNVVT
Sbjct: 235 EGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVT 294

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++  LC+ G ++ A  +LD + ++G  P++ +YN +L  FC   +++ A      M 
Sbjct: 295 FNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 354

Query: 253 SMGC 256
           S GC
Sbjct: 355 SSGC 358



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L   ++  G  P++ T ++LI+  C+ G V     +
Sbjct: 255 PNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEI 314

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L +I +   TP+ +++  ++                       C PD ++YNT++  LC+
Sbjct: 315 LDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCR 374

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 375 GGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIIT 434

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+ G+++EA      +   G+RP+   YN +L G C     + A +LF  M 
Sbjct: 435 YSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMV 494

Query: 253 SMGC 256
           S GC
Sbjct: 495 SNGC 498



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L +    +  + +  ++   G  P+  +++ +++ FCK  ++     
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
            +  ++ S   PD+V++ +L+                     K C P  I+YNT+IDGL 
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  ++A EL  +M  K ++P+++TY+++  G C      EA + F ++ D G++PN V
Sbjct: 409 KAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTV 468

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N I+  LCK      A  L   M+ +G  P+  TY  L++G    G V  A+E+   +
Sbjct: 469 LYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAEL 528

Query: 252 ESMG 255
            S G
Sbjct: 529 CSRG 532



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL + D MLR     P V ++ I+L    K   Y   + L   +   G  PD+ T+++
Sbjct: 169 DNALAVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNV 227

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  C+ GRV              F   + ++      C+P+ ++YN ++ GLC     
Sbjct: 228 VVNGICQEGRVDDAME---------FLKSLPSYG-----CEPNTVSYNIVLKGLCTAERW 273

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A++L  +M  K   PNVVT+  +I   C       A  +  ++   G  PN +++N I
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   CK  KMD A + ++LM+  G  PD  +YNTLL   C  G V+ A EL   ++  GC
Sbjct: 334 LHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 393



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%)

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           I + C +        ++  C+PD ++YN ++ G C  G +D A+ L   M    ++P+  
Sbjct: 97  IKKLCASGRTAEARRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTY 153

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY ++IRG C     + A  +  +M+ +G  P+VVT+ ++++  CK     +A  LLD M
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G  PD  TYN +++G C  GRV+ A E   S+ S GC
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGC 253



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 21/205 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N +L    K K  D  ++  + + S+G +PD+ +++ L+   C+ G V     +L ++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                TP ++++ ++I                     K  +PD ITY+TI  GLC++G +
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A + F K++D  ++PN V Y +++ G C     + A  LF  M+  G  PN  T+ ++
Sbjct: 449 EEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTIL 508

Query: 197 MDELCKNGKMDEASSLLDLMIQHGV 221
           ++ L   G + EA  ++  +   GV
Sbjct: 509 IEGLAYEGLVKEAREMMAELCSRGV 533



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  L K    +  L L   + + GL PD+ T+S + +  C+ GR+      
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKA 454

Query: 94  LGRILRSCFTPDVVTFTS-LIKVCK--------------------PDAITYNTIIDGLCK 132
             ++      P+ V + + L+ +CK                    P+  TY  +I+GL  
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAY 514

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
           +G V +A+E+  ++  + V    +     IR
Sbjct: 515 EGLVKEAREMMAELCSRGVVSKTLVNKGAIR 545


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 127/279 (45%), Gaps = 59/279 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+         D    L   +    + PD YT++ LI   C  GR ++   V
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR    PDVVT+T L+                     K C PD +TYN +++G+C+
Sbjct: 181 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD A E    +     +PN V+Y  V++G C A  W +A+ L  EM  +G  PNVVT
Sbjct: 241 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 300

Query: 193 FNVIMDELCKNG-----------------------------------KMDEASSLLDLMI 217
           FN+++  LC+ G                                   KMD+A + LDLM+
Sbjct: 301 FNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 360

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G  PD  +YNTLL   C +G V+ A EL   ++  GC
Sbjct: 361 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 23/245 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L +    +  L + +++   G  P+  +++ L++ FCK  ++     
Sbjct: 295 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 354

Query: 93  VLGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            L  ++ R C+ PD+V++ +L+                     K C P  I+YNT+IDGL
Sbjct: 355 FLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 413

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G   +A EL  +M  K ++P+++TY+++  G C  +   +A R F ++ D G++PN 
Sbjct: 414 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 473

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G +  A++L   
Sbjct: 474 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDE 533

Query: 251 MESMG 255
           + S G
Sbjct: 534 LCSRG 538



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L   +   G  P++ T ++LI+  C+ G V     V
Sbjct: 261 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 320

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +I +   TP+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 321 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 380

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 381 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 440

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+  ++++A      +   G+RP+   YN ++ G C     + A +LF  M 
Sbjct: 441 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI 500

Query: 253 SMGC 256
             GC
Sbjct: 501 GNGC 504



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 19/177 (10%)

Query: 96  RILRSCFTPDVVTFTSLIK----------------VCKPDAITYNTIIDGLCKQGFVDKA 139
           R++ S   PD  T  +LIK                 C PD + YN ++ G C  G +D A
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           + L  +M    V+P+  TY ++IRG C       A  +  EM+ +   P+VVT+ ++++ 
Sbjct: 146 RRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 202

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            CK     +A  LLD M   G  PD  TYN +++G C  GRV+ A E   ++ S GC
Sbjct: 203 TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 259



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 21/209 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N +L    K K  D  ++    + S G +PD+ +++ L+   C+ G V     +
Sbjct: 331 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 390

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++      P ++++ ++I                     K  +PD ITY+TI  GLC+
Sbjct: 391 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  ++ A   F K++D  ++PN V Y ++I G C   + + A  LF  M+  G  PN  T
Sbjct: 451 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 510

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + ++++ L   G + EA  LLD +   GV
Sbjct: 511 YTILIEGLAYEGLIKEARDLLDELCSRGV 539


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 140/294 (47%), Gaps = 57/294 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  +  M+ M P P  V  FN++ G +AK KHY T +SL K ++  G+ P++ TH+I+I
Sbjct: 62  ALDFYHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVI 120

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------ 114
           NC C++     GF VLG + +    P +VTFT+++                         
Sbjct: 121 NCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYE 180

Query: 115 ------------VCK----PDAITY----------------NTIIDGLCKQGFVDKAKEL 142
                       +CK      A++Y                N ++DGLCK G V +A +L
Sbjct: 181 SDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDL 240

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F +M  K ++P++ TY  +I G C  + W EA  L   MM +G+ P+V TFNVI     K
Sbjct: 241 FSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLK 300

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            G +  A S+   M   G+  D  TY++++   C+  ++  A E+F  M   GC
Sbjct: 301 TGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGC 354



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N ++  L K+        LF ++   G+ PDL+T++ LI+  C   R      +L 
Sbjct: 218 VTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLA 277

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++R    PDV TF              N I     K G + +AK +F  M    ++ +V
Sbjct: 278 NMMRKGIMPDVQTF--------------NVIGGRFLKTGMISRAKSIFSFMGHMGIEHDV 323

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY+S+I   C  N   +A  +F  M+ +G  PN+VT+  ++   C+   M++A   L  
Sbjct: 324 VTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGE 383

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+ +G+ P+  T+NTL+ GFC  G+   AKELF  M   G
Sbjct: 384 MVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHG 423



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN++ G   K        S+F  +   G+  D+ T+S +I   C + ++     V
Sbjct: 286 PDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEV 345

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++R    P++VT+TSLI   C+                    P+ +T+NT+I G CK
Sbjct: 346 FDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCK 405

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    AKELF  M      P++ T   ++ G    +  +EA  LF E+       +++ 
Sbjct: 406 AGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIII 465

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++I++ +C +GK+++A  L   +   GV+ D  TYN +++G C  G ++ A++L + ME
Sbjct: 466 YSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKME 525

Query: 253 SMGC 256
             GC
Sbjct: 526 ENGC 529



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 25/255 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A+ +FD M+R    P  V+  +++ G C  KN   +  +     + + GL P++ T + 
Sbjct: 341 DAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKN--MNKAMYFLGEMVNNGLDPNIVTWNT 398

Query: 77  LINCFCKMGRV-----------SHG--------FVVLGRILRSCFTPDVVT-FTSLIKV- 115
           LI  FCK G+             HG         ++L  + +  F  + ++ F  L K+ 
Sbjct: 399 LIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMN 458

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D I Y+ I++G+C  G ++ A ELF  +  K VK +VVTY  +I G C     ++A+
Sbjct: 459 SDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAE 518

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L ++M + G  P+  T+NV +  L +  ++ +++  L  M   G R +A T   L++ F
Sbjct: 519 DLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYF 578

Query: 236 CLTGRVNHAKELFVS 250
               + N A ++F+ 
Sbjct: 579 S-ANKENRAFQVFLQ 592



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%)

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D L     VD A + + KM      P V  +  +         +  A  L   M   GV
Sbjct: 50  LDSLRNVKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGV 109

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +PNV T N++++ LC+        S+L LM + GV P   T+ T+++G C+ G V  A  
Sbjct: 110 KPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 169

Query: 247 LFVSMESMG 255
               ++ MG
Sbjct: 170 FVDHLKDMG 178


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 16/225 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGF 91
           P  ++  NIM G L   +  D+ L LFK +  +G  P D++T+S +++   K G+V    
Sbjct: 182 PNAITYNNIMHG-LCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               R++ +  +          K C P+ +TY++++ GLCK G +D+A  L  +M     
Sbjct: 241 ----RLVEAMVS----------KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC 286

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            PN+VTY ++I G C     +EA  L  EM+D G QPNVVT+ V++D  CK GK ++A  
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 346

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L+++M++ G  P+ FTYN+LLD FC    V  A +L  SM   GC
Sbjct: 347 LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 391



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 15/225 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N M+  L+K+   D  + L + +   G  P++++++ +++ FCK  RV +   
Sbjct: 41  PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 100

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L +++              ++ C PD ++Y T+I+GLCK   VD+A  +  KM  +  +
Sbjct: 101 LLEQMV--------------MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 146

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNV+TY +++ GFC   D + A  L  +M ++G +PN +T+N IM  LC   K+D A  L
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQL 206

Query: 213 LDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              M + G   PD FTY+T++D    +G+V+ A  L  +M S GC
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGC 251



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 14/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +F  M      PP V +++ ++  L K+   D    L + + S G  P++ T+S 
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK G++     +L R+ RS               C P+ +TYNTIIDG CK G +
Sbjct: 261 LLHGLCKAGKLDEATALLQRMTRS--------------GCSPNIVTYNTIIDGHCKLGRI 306

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L  +M D   +PNVVTYT ++  FC      +A  L   M+++G  PN+ T+N +
Sbjct: 307 DEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSL 366

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D  CK  +++ A  LL  MIQ G  P+  +YNT++ G C   +V+    L   M S  C
Sbjct: 367 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNC 426



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 57/280 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++  L K       + L +++ S    PD+ T + +I+  CK  RV   + +
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 452

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
              I  S  TP++VT+ SL+                      + C PD ITYNT+IDGLC
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR---------------------------- 163
           K   VD+A +LFL+M    + P+ VTY+ VI                             
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 164 -------GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                  GFC   + ++A  +   ++ +G  P+VVTF++ +D L K G++ +A  LL+ M
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ G+ PD  TYNTLL GFC   R   A +LF  M   GC
Sbjct: 633 LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGC 672



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ +L  L K    D   +L +R+  +G  P++ T++ +I+  CK+GR+   + +
Sbjct: 253 PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHL 312

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  ++     P+VVT+T L+   CK                    P+  TYN+++D  CK
Sbjct: 313 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  V++A +L   M  K   PNVV+Y +VI G C A   +E   L  +M+     P++VT
Sbjct: 373 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVT 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM- 251
           FN I+D +CK  ++D A  L +L+ + G  P+  TYN+L+ G C + R + A+ L   M 
Sbjct: 433 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 492

Query: 252 ESMGC 256
              GC
Sbjct: 493 RKQGC 497



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 15/194 (7%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           +N  GL      H  ++   C  G+ S                 V+ F  + K C PD++
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDA---------------VLHFREMSKTCPPDSV 45

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYNT+I+GL K   +D A  L  +M D    PNV +Y +V+ GFC AN    A  L  +M
Sbjct: 46  TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G  P+VV++  +++ LCK  ++DEA  ++D MIQ G +P+  TY TL+DGFC  G +
Sbjct: 106 VMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 242 NHAKELFVSMESMG 255
           + A EL   M   G
Sbjct: 166 DGAVELVRKMTERG 179



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 16/216 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           +I+ G     +  D VL  F+ ++ T   PD  T++ +IN   K  R+     +L  ++ 
Sbjct: 15  SILRGLCDAGQCSDAVLH-FREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 72

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           + F P+V               +YNT++ G CK   V+ A  L  +M  +   P+VV+YT
Sbjct: 73  NGFAPNV--------------FSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +VI G C  +  +EA R+  +M+ +G QPNV+T+  ++D  C+ G +D A  L+  M + 
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G RP+A TYN ++ G C   +++ A +LF  ME  G
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESG 214



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 14/216 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +   M R     P + ++N ++  L K+K  D    LF ++ S GL PD  T+SI
Sbjct: 482 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 541

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  CK   +     VL  +L++ F               P AITY T+IDG CK G +
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGF--------------DPGAITYGTLIDGFCKTGNL 587

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   +  K   P+VVT++  I          +A  L   M+  G+ P+ VT+N +
Sbjct: 588 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 647

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +   C   + ++A  L ++M Q G  PD  TY TL+
Sbjct: 648 LKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K  A  + +I+ GLC  G    A   F +M  K   P+ VTY ++I G   ++  ++A R
Sbjct: 7   KAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIR 65

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM+D G  PNV ++N ++   CK  +++ A  LL+ M+  G  PD  +Y T+++G C
Sbjct: 66  LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLC 125

Query: 237 LTGRVNHAKELFVSMESMGC 256
              +V+ A  +   M   GC
Sbjct: 126 KLDQVDEACRVMDKMIQRGC 145


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+ +    P + +F+ ++    K +  +TV SL + + S GL P++YT++I 
Sbjct: 212 EALEMYRRMV-LEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTIC 270

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + GR+     ++ R+                  C PD +TY  +ID LC  G +D
Sbjct: 271 IRVLGRAGRIDEACRIMKRMEDDG--------------CGPDVVTYTVLIDALCTAGKLD 316

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ELF+KMK  + KP+ VTY +++  F    D    K  + EM   G  P+V+TF +++
Sbjct: 317 DAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILV 376

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G +DEA  LLD+M + GV P+  TYNTL+ G     R++ A +LF +ME++G
Sbjct: 377 NALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLG 434



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F+ M ++    P + + N  L  LA+         +F RL S GL PD  T+++
Sbjct: 456 DKALETFEKM-KIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNM 514

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++ C+ K G+V     +L  +  +               C+PD I  N++I+ L K G V
Sbjct: 515 MMKCYSKAGQVDEAIELLSDMSEN--------------QCEPDIIVINSLINTLYKAGRV 560

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A ++F ++KD  + P VVTY ++I G         A  LF  M   G  PN +TFN I
Sbjct: 561 DEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTI 620

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +D LCKN ++D A  +L  M      PD  T+NT++ G  +  RV+ A  LF  M+ M
Sbjct: 621 LDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM 678



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++       + +   +LF  + + G  PD++T+++L++   K G+++  F +
Sbjct: 788 PTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFEL 847

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++ S               CKP+ IT+N II  L K   +DKA +LF  +   +  P
Sbjct: 848 YEQMICSS--------------CKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSP 893

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              TY  ++ G   +    EAK LF EM+D G +PN   +N++++   K G ++ A  L 
Sbjct: 894 TPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELF 953

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M++ G+RPD  +Y +L+   C  GRV+ A   F  ++  G
Sbjct: 954 KRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 121/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M R     P + ++N ++  L +    D  L LF  + + G+ P  YT+ +
Sbjct: 386 DEAFHLLDVM-RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYIL 444

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK--------------- 117
            I+ + K GR         ++      P++V    +  SL ++ +               
Sbjct: 445 FIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD++TYN ++    K G VD+A EL   M +   +P+++   S+I     A   +EA 
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAW 564

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  + D  + P VVT+N ++  L K G++  A  L   M  +G  P+  T+NT+LD  
Sbjct: 565 KMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCL 624

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C    V+ A ++   M +M C
Sbjct: 625 CKNDEVDLALKMLYKMTTMNC 645



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I +  L +    D    + KR+   G  PD+ T+++LI+  C  G++     +
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++  S   PD VT+ +++                         PD IT+  +++ LCK
Sbjct: 322 FVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  L   M+ + V PN+ TY ++I G    N  ++A  LF  M   GV P   T
Sbjct: 382 AGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + + +D   K+G+ D+A    + M   G+ P+    N  L      GR+  AK +F  ++
Sbjct: 442 YILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLK 501

Query: 253 SMG 255
           S G
Sbjct: 502 SNG 504



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 15/240 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++AL +F  ++    SP P + +  +L  L K+   +    LF+ +   G  P+   ++I
Sbjct: 877  DKALDLFYDLVSGDFSPTPCT-YGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNI 935

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            LIN F K G V+    +  R++R    PD+ ++TSL+                LC+ G V
Sbjct: 936  LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGC--------------LCEAGRV 981

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            D A   F K+K   +  + + Y  +I G   ++   EA  L+ EM  +G+ P++ T+N +
Sbjct: 982  DDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL 1041

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +  L   G +++A  L + +   G+ P+ FTYN L+ G+ ++G  + A  ++  M   GC
Sbjct: 1042 ILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGC 1101



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 21/265 (7%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           + + P +A   F+ +  M        + N ML  L  ++    ++ +F  + +  +  DL
Sbjct: 100 SILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDL 159

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--------------- 116
            T+ I+       G +       G++  + F  +  ++  LI +                
Sbjct: 160 NTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRR 219

Query: 117 ------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                 KP   T++ ++    K+   +  K L  +M+   +KPN+ TYT  IR    A  
Sbjct: 220 MVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGR 279

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            +EA R+   M D G  P+VVT+ V++D LC  GK+D+A  L   M     +PD  TY T
Sbjct: 280 IDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYIT 339

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           +LD F   G +   KE +  ME+ G
Sbjct: 340 MLDKFSDCGDLGRVKEFWSEMEADG 364



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 61/282 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG------RV 87
           P V +FN ++  L   K     + LF ++    L PD  T   L+    K G      ++
Sbjct: 647 PDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNGLMEDAFKI 705

Query: 88  SHGFV--------------VLGRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGL 130
           +  FV              ++G IL    T   + F   +   +VCK D      II  L
Sbjct: 706 AEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCK-DGSVLMPIIKVL 764

Query: 131 CKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           CK      A+ +F++  K+  VKP + +Y  +I GF   ++   A  LF EM + G  P+
Sbjct: 765 CKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPD 824

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT------------------- 230
           V T+N+++D   K+GK++E   L + MI    +P+  T+N                    
Sbjct: 825 VFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFY 884

Query: 231 ----------------LLDGFCLTGRVNHAKELFVSMESMGC 256
                           LLDG   +GR+  AKELF  M   GC
Sbjct: 885 DLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGC 926



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 52/261 (19%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN +L CL KN   D  L +  ++ +    PD+ T + +I          HG V
Sbjct: 611 PPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTII----------HGLV 660

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA------------- 139
           +  R+     +  +  F  + K+  PD +T  T++ G+ K G ++ A             
Sbjct: 661 IEKRV-----SDAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGV 715

Query: 140 -------------------KELFLKMKDKNVKPNVVTYTSV----IRGFCYANDWNEAKR 176
                               E  +   D+ V   V    SV    I+  C       A+ 
Sbjct: 716 YVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQS 775

Query: 177 LFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +FI    + GV+P + ++N +++        + A +L   M   G  PD FTYN LLD  
Sbjct: 776 VFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAH 835

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             +G++N   EL+  M    C
Sbjct: 836 GKSGKINELFELYEQMICSSC 856



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           ++ K D  TY  I  GL  +G + +    F KM++     N  +Y  +I     +    E
Sbjct: 153 QIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCRE 212

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M+ +G++P++ TF+ +M    K    +   SLL+ M   G++P+ +TY   + 
Sbjct: 213 ALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIR 272

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                GR++ A  +   ME  GC
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGC 295


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 21/246 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V ++N ++    K    +    +  R+ + G  PD+ T++I+I   C   ++    
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGL 130
            VL ++L     P V+T+T LI+                        PD  TYN II G+
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 252

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+G V++A EL   +  K  KP+V++Y  ++R F     W+E ++L  EM  +G +PN 
Sbjct: 253 CKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 312

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+++++  LC+ G++DEA S+L +MI+  + PD ++Y+ L+   C  GR++ A  +   
Sbjct: 313 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 372

Query: 251 MESMGC 256
           M S GC
Sbjct: 373 MISNGC 378



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI+L        +D    L   + S G  P+  T+SILI+  C+ GR+     V
Sbjct: 275 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 334

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++    TPD  ++  LI                       C PD + YNTI+  LCK
Sbjct: 335 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 394

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  ++A E+F K++     PNV +Y ++I       D + A  +   M+ +GV P+ +T
Sbjct: 395 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEIT 454

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++G ++EA  LLD M Q G RP   +YN +L G C   R++ A  +F  M 
Sbjct: 455 YNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 514

Query: 253 SMGC 256
             GC
Sbjct: 515 EKGC 518



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NIM+G L   +     L +  +L      P + T++ILI      G ++    +
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 229

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L     PD+ T+ ++I                     K CKPD I+YN ++     
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLN 289

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG  D+ ++L  +M  +  +PN VTY+ +I   C     +EA  +   M+++ + P+  +
Sbjct: 290 QGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 349

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LCK G++D A  ++D MI +G  PD   YNT+L   C  G  N A E+F  + 
Sbjct: 350 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 409

Query: 253 SMGC 256
            MGC
Sbjct: 410 GMGC 413



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 20/200 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------C 116
           L+N  CK G+ +     L  ++   +TPDV+  T LIK                      
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD   YN +I G CK   ++ A ++  +MK +   P++VTY  +I   C       A +
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +++     P V+T+ ++++     G ++EA  LL+ M+  G+ PD +TYN ++ G C
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G V  A EL  S+ S GC
Sbjct: 254 KEGMVERAAELITSLTSKGC 273



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I++  L +    D  +S+ K +    L PD Y++  LI+  CK GR+     +
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +  ++ +   PD+V + +++                       C P+  +YNT+I  L  
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  +   M  K V P+ +TY S+I   C      EA  L  +M   G +P V++
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVIS 489

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LCK  ++D+A  +   MI+ G RP+  TY  L++G    G    A EL  S+ 
Sbjct: 490 YNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 549

Query: 253 S 253
           S
Sbjct: 550 S 550



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ I DYM+  +   P + ++N +L  L KN + +  L +F +L   G  P++ +++ +I
Sbjct: 366 AIGIMDYMIS-NGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 424

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           +     G  S     LG +      P +++     K   PD ITYN++I  LC+ G V++
Sbjct: 425 SALWSCGDRSRA---LGMV------PAMIS-----KGVDPDEITYNSLISCLCRDGLVEE 470

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L   M+    +P V++Y  V+ G C     ++A  +F EM+++G +PN  T+ ++++
Sbjct: 471 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 530

Query: 199 ELCKNGKMDEASSLLDLMIQHGV 221
            +   G   EA  L + +    V
Sbjct: 531 GIGFAGWRTEAMELANSLFSRDV 553


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ + +F+  ++     P V SFN+++  + +       L L +R+N  G  PD  TH+I
Sbjct: 63  HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L++  C+   VS G  VL R+ R     P+VVTFTS+I   CK                 
Sbjct: 123 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 182

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K G +  A E++ +M      P+VVT++S+I G+C     ++A
Sbjct: 183 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 242

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R++ +M    +QPNV TF++I+  LCK  + DEA  LL +L ++  + P AF YN ++D
Sbjct: 243 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVID 302

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   ME  GC
Sbjct: 303 VLCKCGKVDEANLIRKGMEEKGC 325



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ ++  M R+   PP V +F+ ++    +    D  L ++  +    + P++YT SI+I
Sbjct: 207 AVEVYQQMTRLR-CPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIII 265

Query: 79  NCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  CK  R      +L  + LR    PD+           P A  YN +ID LCK G VD
Sbjct: 266 HSLCKQNRSDEAIGLLNELNLR----PDIA----------PQAFIYNPVIDVLCKCGKVD 311

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +   M++K  +P+  TYT +I G+C  +  +EA   F EM++ G  P+ +T N  +
Sbjct: 312 EANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFI 371

Query: 198 DELCKNGKMDEASSLLDL 215
             L K G  +E   ++ L
Sbjct: 372 SCLLKAGMPNEVDHVMRL 389


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 146/294 (49%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M R    P  VS F+ ++G LA+N H    L  F+ +  +G+ PD   ++IL
Sbjct: 380 EAQEIFDEMSRRGVLPDLVS-FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 78  INCFCKMGRVSHGFVVLGRIL-RSCF---------------------------------- 102
           I+ FC+ G +S    +   +L R CF                                  
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 103 TPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKE 141
            PD  TFT+LI+  CK                    PD +TYNT+IDG CK G + +AKE
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L+  M  K++ P+ ++Y +V+ GFC +    EA  L  +M+++G++PN+VT N ++   C
Sbjct: 559 LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC 618

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++G M +A   L  MI +G+ PD+F+YNTL+DG+     +  A  L   ME  G
Sbjct: 619 RSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L K++ ++ V+     +   G+F D+ T++ LIN +C+ G V   F +L 
Sbjct: 257 VYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                       +F+S  +  +P  +TYN I+ GLCK G  D+AK++ ++M    + PN 
Sbjct: 317 ------------SFSS--RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA 362

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +++   C  ++  EA+ +F EM  +GV P++V+F+ ++  L +NG + +A      
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M + G+ PD   Y  L+DGFC  G ++ A ++   M + GC
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L K   YD    +   +   GL P+  T++ L+   C+   +     +
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              + R    PD+V+F+SLI V                       PD + Y  +IDG C+
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A ++  +M  +    +VVTY + + G C    + +A  LF EM+++G+ P+  T
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT 504

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           F  ++   CK+G MD+A +L + M++  ++PD  TYNTL+DGFC  G +  AKEL+  M
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F  ++    K+ + D  L+LF+ +  T L PD  T++ LI+ FCK G +     +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              ++R    PD +++ +++                     K  +P+ +T NT+I G C+
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA E   KM    + P+  +Y ++I G+    +  +A  L  EM  +G+Q N++T
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIIT 679

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +N+I++  C  GKM EA  +L  MI+ G+ PD  TY++L++G
Sbjct: 680 YNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 18/232 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR       +++ N +LG L +    D    ++  +   G+  ++YT +I++N  CK  
Sbjct: 212 ILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDR 271

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +                  +V+ F S +  K    D +TYNT+I+  C++G V++A +L 
Sbjct: 272 KFE----------------NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                + ++P ++TY +++ G C    ++ AK + IEM+  G+ PN  T+N ++ E+C+ 
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + EA  + D M + GV PD  ++++L+      G +  A   F  ME  G
Sbjct: 376 DNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 113/229 (49%), Gaps = 22/229 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F+ M+R +  P  V+ +N ++    K         L+  +    + PD  ++  
Sbjct: 519 DKALNLFEAMVRTNLKPDKVT-YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           ++N FC  G +     +  ++L     P++VT  +LIK  C+                  
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD+ +YNT+IDG  K+  ++KA  L  +M+ + ++ N++TY  ++ GFC      EA+
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           ++  +M++ G+ P+  T++ +++       M EA    D M+Q G+ PD
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---KPDAITYNTIIDGLC 131
           S +++   +  R+S     + R++R      V    SLI  C       + Y+ ++    
Sbjct: 139 SAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYV 198

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +   + +  E F  ++ K V  ++     ++ G       + A  ++ E++  G++ NV 
Sbjct: 199 QAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVY 258

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T N++++ LCK+ K +     L  M   GV  D  TYNTL++ +C  G V  A +L  S 
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 252 ESMG 255
            S G
Sbjct: 319 SSRG 322


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 129/246 (52%), Gaps = 21/246 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V ++N ++    K    +    +  R+ + G  PD+ T++I+I   C   ++    
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGL 130
            VL ++L     P V+T+T LI+                        PD  TYN II G+
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+G V++A EL   +  K  +P+V++Y  ++R F     W+E ++L  EM  +G +PN 
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+++++  LC+ G++DEA S+L +MI+  + PD ++Y+ L+   C  GR++ A  +   
Sbjct: 323 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 382

Query: 251 MESMGC 256
           M S GC
Sbjct: 383 MISNGC 388



 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI+L        +D    L   + S G  P+  T+SILI+  C+ GR+     V
Sbjct: 285 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 344

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++    TPD  ++  LI                       C PD + YNTI+  LCK
Sbjct: 345 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  ++A E+F K++     PNV +Y ++I       D + A  +   M+ +G+ P+ +T
Sbjct: 405 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEIT 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++G ++EA  LLD M Q G RP   +YN +L G C   R++ A  +F  M 
Sbjct: 465 YNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 524

Query: 253 SMGC 256
             GC
Sbjct: 525 EKGC 528



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NIM+G L   +     L++  +L      P + T++ILI      G ++    +
Sbjct: 180 PDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 239

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L     PD+ T+ ++I                     K C+PD I+YN ++     
Sbjct: 240 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLN 299

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG  D+ ++L  +M  +  +PN VTY+ +I   C     +EA  +   M+++ + P+  +
Sbjct: 300 QGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 359

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LCK G++D A  ++D MI +G  PD   YNT+L   C  G  N A E+F  + 
Sbjct: 360 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 419

Query: 253 SMGC 256
            MGC
Sbjct: 420 GMGC 423



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 20/200 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------C 116
           L+N  CK G+ +     L  ++   +TPDV+  T LIK                      
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD   YN +I G CK   ++ A ++  +MK +   P++VTY  +I   C       A  
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +++     P V+T+ ++++     G ++EA  LL+ M+  G+ PD +TYN ++ G C
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 263

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G V  A EL  S+ S GC
Sbjct: 264 KEGMVERAAELITSLTSKGC 283



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I++  L +    D  +S+ K +    L PD Y++  LI+  CK GR+     +
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +  ++ +   PD+V + +++                       C P+  +YNT+I  L  
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  +   M  K + P+ +TY S+I   C      EA  L  +M   G +P V++
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVIS 499

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LCK  ++D+A  +   MI+ G RP+  TY  L++G    G    A EL  S+ 
Sbjct: 500 YNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 559

Query: 253 S 253
           S
Sbjct: 560 S 560



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ I DYM+  +   P + ++N +L  L KN + +  L +F +L   G  P++ +++ +I
Sbjct: 376 AIGIMDYMIS-NGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 434

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           +     G  S     LG +      P +++     K   PD ITYN++I  LC+ G V++
Sbjct: 435 SALWSCGDRSRA---LGMV------PAMIS-----KGIDPDEITYNSLISCLCRDGLVEE 480

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L   M+    +P V++Y  V+ G C     ++A  +F EM+++G +PN  T+ ++++
Sbjct: 481 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 540

Query: 199 ELCKNGKMDEASSLLDLMIQHGV 221
            +   G   EA  L + +    V
Sbjct: 541 GIGFAGWRTEAMELANSLFSRDV 563


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+++++    + +    VL L + L   GL P+ YT++ +I+  CK GRV     V
Sbjct: 285 PDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQV 344

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +      PD V +T+LI                     K   PD +TY ++I GLC+
Sbjct: 345 LRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQ 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A++LF +M  K +KP+ VTYT++I G+C A +  EA  L  +M+++G+ PNVVT
Sbjct: 405 AGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK G++D A+ LL  M + G++P+  TYN L++G C  G +  A +L   M+
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMD 524

Query: 253 SMG 255
             G
Sbjct: 525 LAG 527



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 127/239 (53%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+NI+L  L +        SL  ++   G  PD+ ++S++++ +C++ ++     ++  +
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEEL 313

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
            R    P+  T+ S+I  +CK                    PD + Y T+I G  K G V
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
               +LF +MK K + P+ VTYTS+I G C A    EA++LF EM+ +G++P+ VT+  +
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D  CK G+M EA SL + M++ G+ P+  TY  L+DG C  G V+ A EL   M   G
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG 492



 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R    P  V+  +++ G     K  +    LF  + S GL PD  T++ LI+ +
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEA-RKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK G +   F +  +++    TP+VVT+T+L+                     K  +P+ 
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYN +I+GLCK G +++A +L  +M      P+ +TYT+++  +C   +  +A  L   
Sbjct: 498 CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRI 557

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+D+G+QP +VTFNV+M+  C +G +++   L+  M+  G+ P+A T+N+L+  +C+   
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617

Query: 241 VNHAKELFVSMESMG 255
           +    E++  M + G
Sbjct: 618 MRATIEIYKGMHAQG 632



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L K         + + + +  +FPD   ++ LI+ F K G VS  + +
Sbjct: 320 PNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKL 379

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              + R    PD VT+TS+I                     K  KPD +TY  +IDG CK
Sbjct: 380 FDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCK 439

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  L  +M +K + PNVVTYT+++ G C   + + A  L  EM ++G+QPNV T
Sbjct: 440 AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++ LCK G +++A  L++ M   G  PD  TY T++D +C  G +  A EL   M 
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIML 559

Query: 253 SMG 255
             G
Sbjct: 560 DKG 562



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  ML     P  V+ +  ++    K        SL  ++   GL P++ T++ L
Sbjct: 410 EARKLFSEMLSKGLKPDEVT-YTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTAL 468

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++  CK G V     +L  +      P+V T+ +LI  +CK                   
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY TI+D  CK G + KA EL   M DK ++P +VT+  ++ GFC +    + +R
Sbjct: 529 FPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGER 588

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+D+G+ PN  TFN +M + C    M     +   M   GV PD  TYN L+ G C
Sbjct: 589 LIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHC 648

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  A  L   M   G
Sbjct: 649 KARNMKEAWFLHKEMVEKG 667



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K  + +  + L + ++  G FPD  T++ +++ +CKMG ++    +
Sbjct: 495 PNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHEL 554

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L     P +VTF              N +++G C  G ++  + L   M DK + P
Sbjct: 555 LRIMLDKGLQPTIVTF--------------NVLMNGFCMSGMLEDGERLIKWMLDKGIMP 600

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  T+ S+++ +C  N+      ++  M  QGV P+  T+N+++   CK   M EA  L 
Sbjct: 601 NATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLH 660

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M++ G    A +YN+L+ GF    +   A++LF  M + G
Sbjct: 661 KEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 10/194 (5%)

Query: 62  LNSTGLFPDLYTHSILIN---CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           L +  LF  L  + +L++   C   + R+S+ F      +R+ F   V    S + VC  
Sbjct: 198 LEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSF----DGIRTAFR--VFREYSEVGVCW- 250

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + ++YN I+  LC+ G V +A  L ++M+ +   P+VV+Y+ ++ G+C      +  +L 
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            E+  +G++PN  T+N I+  LCK G++ EA  +L +M    + PD   Y TL+ GF  +
Sbjct: 311 EELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKS 370

Query: 239 GRVNHAKELFVSME 252
           G V+   +LF  M+
Sbjct: 371 GNVSVEYKLFDEMK 384



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 67/118 (56%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A  +F +  +  V  N V+Y  ++   C      EA  L I+M  +G  P+VV+++V
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           I+D  C+  ++ +   L++ + + G++P+ +TYN+++   C TGRV  A+++   M++
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKN 350



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW-NEAKRLFI 179
           + ++     L + G + +A +LF K+ +  V  +V +    +     + D    A R+F 
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFR 241

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           E  + GV  N V++N+I+  LC+ GK+ EA SLL  M   G  PD  +Y+ ++DG+C   
Sbjct: 242 EYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVE 301

Query: 240 RVNHAKELFVSMESMG 255
           ++    +L   ++  G
Sbjct: 302 QLGKVLKLMEELQRKG 317


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + N++L  +      D  L L + L S G  PD+ +++ ++   C   R      ++ 
Sbjct: 229 VGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELME 288

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++R    P++VTF +LI                       C PD   Y TIIDG+CK+G
Sbjct: 289 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 348

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A E+  +M    +KPNVV Y ++++G C A  W E + L  EM D+    + VTFN
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 408

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++D  C+NG +D    LL+ M++HG  PD  TY T+++GFC  G ++ A  L  SM + 
Sbjct: 409 ILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 468

Query: 255 GC 256
           GC
Sbjct: 469 GC 470



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + M+RM   PP + +FN ++  L +N  ++ V  +  ++   G  PD+  ++ +I+  
Sbjct: 286 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 464

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN ++YT V++G C A  W +A+ L  +M+ QG   N +TFN +++ LCK G 
Sbjct: 465 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 524

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+ + A EL   M + G
Sbjct: 525 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 574



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 406 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 465

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C  + IT+NT+I+ LCK+G V
Sbjct: 466 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 525

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A   +EA  L   M+++G+ PN + ++ I
Sbjct: 526 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 585

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C  G    A E    M S GC
Sbjct: 586 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGC 645



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP-----DVV--------TFTSLIKV 115
           P+ YT+  ++   C  GR++    VL  + R    P      V+         F S ++V
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C  D    N +++ +C QG VD+A  L   +     +P+VV+Y +V++G C 
Sbjct: 217 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 276

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W   + L  EM+     PN+VTFN ++  LC+NG  +    +L  M++HG  PD   
Sbjct: 277 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRM 336

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y T++DG C  G +  A E+   M S G
Sbjct: 337 YATIIDGICKEGHLEVAHEILNRMPSYG 364



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A TY  ++  LC +G +  A  +  +M  +   P    Y  ++   C    +  A R+
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             ++  +G   +V   N++++ +C  G +DEA  LL  +   G  PD  +YN +L G C+
Sbjct: 217 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 276

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  M C
Sbjct: 277 AKRWGCVQELMEEMVRMAC 295



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A     A+RL   +    V PN  T+  ++  LC  G++ +A ++LD M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  P    Y+ +L+  C  G    A  +   + + GC
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGC 225


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M +     P ++++  +L   A       +  L   +   G+ PD Y  SIL
Sbjct: 319 EARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    P+              A+TY  +I  LCK G V+
Sbjct: 378 ICAYAKQGKVDQAMLVFSKMRQQGLNPN--------------AVTYGAVIGILCKSGRVE 423

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I G C  N W  A+ L +EM+D+G+  N + FN I+
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L +LM++ GV+P+  TYNTL++G+CL G+++ A +L   M S+G
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 26/257 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP       F+I++   AK    D  + +F ++   GL P+  T+  +I 
Sbjct: 358 LLDLMVRNGIHPDH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKP------------------ 118
             CK GRV    +   +++    +P  + + SLI     C                    
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + I +N+IID  CK+G V ++++LF  M    VKPNV+TY ++I G+C A   +EA +L 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M+  G++PN VT++ +++  CK  +M++A  L   M   GV PD  TYN +L G   T
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 239 GRVNHAKELFVSMESMG 255
            R   AKEL+V +   G
Sbjct: 595 RRTAAAKELYVRITESG 611



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 132/302 (43%), Gaps = 65/302 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYT 73
            +A  +FD +LR       +   N  L  +A++     V S + R+   G   + PDL T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCT 89

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCF------------------------------- 102
           + ILI C C+ GR+  GF  LG +++  F                               
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 103 -----TPDVVTFTSLIK-VCK-----------------------PDAITYNTIIDGLCKQ 133
                 P+V ++  L+K +C                        PD ++Y T+I+G  K+
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  DKA   + +M D+ + P+VVTY S+I   C A   ++A  +   M+  GV P+ +T+
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N I+   C +G+  EA   L  M   GV PD  TY+ L+D  C  GR   A+++F SM  
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329

Query: 254 MG 255
            G
Sbjct: 330 RG 331



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   PD +TYN+II  LCK   +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+P+VVT++++
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           MD LCKNG+  EA  + D M + G++P+  TY TLL G+   G
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V S+NI+L  L         L L   +      G  PD+ +++ +IN F K G     
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG 129
           +     +L     PDVVT+ S+I  +CK                    PD +TYN+I+ G
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            C  G   +A     KM+   V+P+VVTY+ ++   C      EA+++F  M  +G++P 
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+  ++      G + E   LLDLM+++G+ PD + ++ L+  +   G+V+ A  +F 
Sbjct: 336 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFS 395

Query: 250 SMESMG 255
            M   G
Sbjct: 396 KMRQQG 401



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+  ++    K    D   S +  +   G+ PD+ T+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
           + +I   CK   +     VL  ++++   PD +T+ S++                     
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +PD +TY+ ++D LCK G   +A+++F  M  + +KP + TY ++++G+       E
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              L   M+  G+ P+   F++++    K GK+D+A  +   M Q G+ P+A TY  ++ 
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414

Query: 234 GFCLTGRVNHAKELFVSM 251
             C +GRV  A   F  M
Sbjct: 415 ILCKSGRVEDAMLYFEQM 432



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +F+ M+R+   P  ++   ++ G CLA     D  + L   + S GL P+  T+S 
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDI--------------ITYNIILQGLFQTRRT 597

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++++ +   +  + TY  ++ G C     ++A ++F  +    ++    TFN++
Sbjct: 598 AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIM 657

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D L K G+ DEA  L      +G+ P+ +TY  + +     G +    +LF+SME  GC
Sbjct: 658 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 717



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M+ +   P  V+ ++ ++    K    +  L LFK + S+G+ PD+ T++I
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 586

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           ++    +  R +    +  RI  S    ++ T+  ++  +CK                  
Sbjct: 587 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +A T+N +ID L K G  D+AK+LF+      + PN  TY  +           E  
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 706

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +LF+ M D G   +    N I+ EL + G++  A + L ++ +     +A T +  +D
Sbjct: 707 QLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 124/248 (50%), Gaps = 56/248 (22%)

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------- 113
            GL P+  T +ILINCFC++ RV  GF VL + ++    P +VTFT+LI           
Sbjct: 4   AGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQ 63

Query: 114 ----------KVCKPDAITYNTIIDGLCKQG----------------------------- 134
                     + C+PD  TY TII+GLCK G                             
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIH 123

Query: 135 ------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
                  V++A ++F  MK K++ P + TYTS+I+G C  + W EA  L  EM    + P
Sbjct: 124 SLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMP 183

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NVVTFNV++D  CK GK+  A  +L  M + GV PD  TYN+L+ G+ +   V  A++LF
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLF 243

Query: 249 VSMESMGC 256
             M + GC
Sbjct: 244 DVMITKGC 251



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM +     P + ++  ++  L     +    +L   + S  + P++ T ++
Sbjct: 132 NEALDIFSYM-KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNV 190

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G+V     VL  +      PDVVT              YN+++ G      V
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVT--------------YNSLMYGYSMWTEV 236

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A++LF  M  K  KP+V +Y+ +I G+C A   +EAK+LF EM+ QG  PN V++N +
Sbjct: 237 VEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTL 296

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +  LC+ G++ EA  L   M  +G  P+ +TY  LLDGFC  G +  A  LF +M+S
Sbjct: 297 IHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQS 353



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+     P   +   I+ G L K         LFK++   G   ++ T+S L
Sbjct: 63  QAVELFDDMVARGCQPDDYTYTTIING-LCKIGETALAAGLFKKMEEAGCQLNVVTYSTL 121

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK  RV+    +   +     +P + T+TSLI+ +C                    
Sbjct: 122 IHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNI 181

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T+N ++D  CK+G V  A+ +   M +  V+P+VVTY S++ G+    +  EA++
Sbjct: 182 MPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARK 241

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M+ +G +P+V +++++++  CK  ++DEA  L + MI  G  P+  +YNTL+ G C
Sbjct: 242 LFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLC 301

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A++LF +M + G
Sbjct: 302 QLGRLREAQDLFKNMHTNG 320



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++   +          LF  + + G  PD++++SILIN +CK  R+     +
Sbjct: 218 PDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQL 277

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++    TP+ V++ +LI  +C+                    P+  TY  ++DG CK
Sbjct: 278 FNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCK 337

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG++ KA  LF  M+   +KPN+V Y  ++   C + +  +A+ LF E+   G+QPNV  
Sbjct: 338 QGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQI 397

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++ LCK G +DEA      M   G  PD F+YN ++ GF      + A  L   M 
Sbjct: 398 YTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMR 457

Query: 253 SMG 255
             G
Sbjct: 458 DRG 460



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M+    +P  VS +N ++  L +         LFK +++ G  P+LYT++I
Sbjct: 272 DEAKQLFNEMIHQGSTPNNVS-YNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAI 330

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ FCK G +   F +  R ++S +              KP+ + YN +++ +CK G +
Sbjct: 331 LLDGFCKQGYLGKAFRLF-RAMQSTY-------------LKPNLVMYNILVNAMCKSGNL 376

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ELF ++    ++PNV  YT++I G C     +EA   F  M D G  P+  ++NVI
Sbjct: 377 KDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVI 436

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +    ++     A  L+  M   G   DA T
Sbjct: 437 IRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 146/294 (49%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M R    P  VS F+ ++G LA+N H    L  F+ +  +G+ PD   ++IL
Sbjct: 380 EAQEIFDEMSRRGVLPDLVS-FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 78  INCFCKMGRVSHGFVVLGRIL-RSCF---------------------------------- 102
           I+ FC+ G +S    +   +L R CF                                  
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 103 TPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKE 141
            PD  TFT+LI+  CK                    PD +TYNT+IDG CK G + +AKE
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKE 558

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L+  M  K++ P+ ++Y +V+ GFC +    EA  L  +M+++G++PN+VT N ++   C
Sbjct: 559 LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC 618

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++G M +A   L  MI +G+ PD+F+YNTL+DG+     +  A  L   ME  G
Sbjct: 619 RSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L K++ ++ V+     +   G+F D+ T++ LIN +C+ G V   F +L 
Sbjct: 257 VYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                       +F+S  +  +P  +TYN I+ GLCK G  D+AK++ ++M    + PN 
Sbjct: 317 ------------SFSS--RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA 362

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +++   C  ++  EA+ +F EM  +GV P++V+F+ ++  L +NG + +A      
Sbjct: 363 ATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M + G+ PD   Y  L+DGFC  G ++ A ++   M + GC
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 29/243 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L K   YD    +   +   GL P+  T++ L+   C+   +     +
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              + R    PD+V+F+SLI V                       PD + Y  +IDG C+
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 133 QGFVDKAKELFLKMKDKNVKP----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G +  A    LKM+D+ +      +VVTY + + G C    + +A  LF EM+++G+ P
Sbjct: 445 NGALSDA----LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVP 500

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  TF  ++   CK+G MD+A +L + M++  ++PD  TYNTL+DGFC  G +  AKEL+
Sbjct: 501 DFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELW 560

Query: 249 VSM 251
             M
Sbjct: 561 DDM 563



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F  ++    K+ + D  L+LF+ +  T L PD  T++ LI+ FCK G +     +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              ++R    PD +++ +++                     K  +P+ +T NT+I G C+
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA E   KM    + P+  +Y ++I G+    +  +A  L  EM  +G+Q N++T
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIIT 679

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +N+I++  C  GKM EA  +L  MI+ G+ PD  TY++L++G
Sbjct: 680 YNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 18/232 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR       +++ N +LG L +    D    ++  +   G+  ++YT +I++N  CK  
Sbjct: 212 ILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDR 271

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +                  +V+ F S +  K    D +TYNT+I+  C++G V++A +L 
Sbjct: 272 KFE----------------NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                + ++P ++TY +++ G C    ++ AK + IEM+  G+ PN  T+N ++ E+C+ 
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + EA  + D M + GV PD  ++++L+      G +  A   F  ME  G
Sbjct: 376 DNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 113/229 (49%), Gaps = 22/229 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F+ M+R +  P  V+ +N ++    K         L+  +    + PD  ++  
Sbjct: 519 DKALNLFEAMVRTNLKPDKVT-YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           ++N FC  G +     +  ++L     P++VT  +LIK  C+                  
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD+ +YNT+IDG  K+  ++KA  L  +M+ + ++ N++TY  ++ GFC      EA+
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           ++  +M++ G+ P+  T++ +++       M EA    D M+Q G+ PD
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---KPDAITYNTIIDGLC 131
           S +++   +  R+S     + R++R      V    SLI  C       + Y+ ++    
Sbjct: 139 SAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYV 198

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +   + +  E F  ++ K V  ++     ++ G       + A  ++ E++  G++ NV 
Sbjct: 199 QAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVY 258

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T N++++ LCK+ K +     L  M   GV  D  TYNTL++ +C  G V  A +L  S 
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 252 ESMG 255
            S G
Sbjct: 319 SSRG 322


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++++  +L   A       + +L   +   G+ PD Y ++ILI  + K G+V    +V
Sbjct: 304 PDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLV 363

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++ +    PD              A+TY  +I  LCK G V+ A   F +M D+ + P
Sbjct: 364 FSKMRQQGLNPD--------------AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 409

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
             + Y S+I G C  N W  A+ L +EM+D+G+  N + FN I+D  CK G++ E+  L 
Sbjct: 410 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 469

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           DLM++ GV+PD  TY+TL+DG+CL G+++ A +L   M S+G
Sbjct: 470 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 511



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 128/258 (49%), Gaps = 26/258 (10%)

Query: 21  CIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
            + D M+R  +HP       +NI++   AK    D  + +F ++   GL PD  T+  +I
Sbjct: 327 ALLDLMVRNGIHPDH---YVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVI 383

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKP----------------- 118
              CK GRV    +   +++    +P  + + SLI     C                   
Sbjct: 384 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 443

Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            + I +N+IID  CK+G V ++++LF  M    VKP+++TY+++I G+C A   +EA +L
Sbjct: 444 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 503

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++PN VT+  +++  CK  +M +A  L   M   GV PD  TYN +L G   
Sbjct: 504 LSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQ 563

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 564 TRRTAAAKELYVRITESG 581



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 30/267 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYT 73
            +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P ++T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 89

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------- 114
           ++ILI C C+  R+  GF  LG +++  F  + +TFT L+K                   
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 115 ---VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---NVKPNVVTYTSVIRGFCYA 168
               C PD  +   ++ GLC +    +A EL   M D       P+VV+YT+VI GF   
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKE 209

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D  +A   + EM+D+ + P+VVT++ I+  LCK   MD+A  +L  M+++GV P+  TY
Sbjct: 210 GDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY 269

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
            +++ G+C +G+   A      + S G
Sbjct: 270 TSIMHGYCSSGQPKEAIGFLKKVRSDG 296



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 67/314 (21%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            D+   +P  A+  ++ M R       P V ++ I++GC  +    D   +    +   G
Sbjct: 58  ADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKG 117

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK-VC-------- 116
              +  T + L+   C   R S    +VL R+      PDV + T L+K +C        
Sbjct: 118 FRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEA 177

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                           PD ++Y T+I+G  K+G   KA   + +M D+ + P+VVTY+S+
Sbjct: 178 LELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA------------ 209
           I   C     ++A  +   M+  GV PN  T+  IM   C +G+  EA            
Sbjct: 238 IAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGV 297

Query: 210 ----------------------------SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
                                        +LLDLM+++G+ PD + YN L+  +   G+V
Sbjct: 298 EPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKV 357

Query: 242 NHAKELFVSMESMG 255
           + A  +F  M   G
Sbjct: 358 DEAMLVFSKMRQQG 371



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D  + L   + S GL P+  T+  
Sbjct: 464 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYRT 521

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 522 LINGYCKISRMGDALVLFKEMESSGVSPDI--------------ITYNIILQGLFQTRRT 567

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++++ +   +  + TY  ++ G C     ++A R+F  +    ++    TFN++
Sbjct: 568 AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIM 627

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D L K G+  EA  L      +G+ P+ +TY  + +     G +    +LF+SME  GC
Sbjct: 628 IDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 687



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+  F+ M+    SP  +   +++ G    NK ++    L   +   G+  +    + 
Sbjct: 393 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK-WERAEELILEMLDRGICLNTIFFNS 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+  CK GRV     +   ++R    PD++T+++LI   C                   
Sbjct: 452 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 511

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ +TY T+I+G CK   +  A  LF +M+   V P+++TY  +++G         AK
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ + + G Q  + T+N+I+  LCKN   D+A  +   +    ++ +A T+N ++D  
Sbjct: 572 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 631

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AK+LFV+  S G
Sbjct: 632 LKVGRNGEAKDLFVAFSSNG 651



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD       +A   +  ML    SP  V+ ++ ++  L K +  D  + +   +   G+
Sbjct: 209 EGD-----SGKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTSMVKNGV 262

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+  T++ +++ +C  G+       L ++      PD +         +PD  TY T++
Sbjct: 263 MPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGL---------EPDIATYCTLL 313

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            G   +G +     L   M    + P+   Y  +I  +      +EA  +F +M  QG+ 
Sbjct: 314 QGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLN 373

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+ VT+  ++  LCK+G++++A    + MI  G+ P    YN+L+ G C   +   A+EL
Sbjct: 374 PDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 433

Query: 248 FVSMESMG 255
            + M   G
Sbjct: 434 ILEMLDRG 441



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M+ +   P  V+ +  ++    K       L LFK + S+G+ PD+ T++I
Sbjct: 498 DEAMKLLSGMVSVGLKPNTVT-YRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNI 556

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           ++    +  R +    +  RI  S    ++ T+  ++  +CK                  
Sbjct: 557 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMD 616

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +A T+N +ID L K G   +AK+LF+      + PN  TY  +           E  
Sbjct: 617 LKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 676

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +LF+ M D G   +    N I+ EL + G++  A + L ++ +     +A T +  +D
Sbjct: 677 QLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 734


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     +  I  ++A+ +F  M+   P  P V  F+ +   +AK K YD VL+L K
Sbjct: 58  ERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALCK 112

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
           ++   G+  +LYT SI+INCFC+  ++   F  +G+I++  + P+ +TF+          
Sbjct: 113 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFS---------- 162

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+I+GLC +G V +A EL  +M +   KP+++T  +++ G C +    EA  L  +
Sbjct: 163 ----TLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDK 218

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QPN VT+  +++ +CK+G+   A  LL  M +  ++ DA  Y+ ++DG C  G 
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278

Query: 241 VNHAKELFVSMESMG 255
           +++A  LF  ME  G
Sbjct: 279 LDNAFNLFNEMEMKG 293



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++  L         L L  R+   G  PDL T + L+N  C  G+ +   ++
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           + +++     P+ VT+  ++ V CK                     DA+ Y+ IIDGLCK
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  LF +M+ K +  N++TY  +I GFC A  W++  +L  +M+ + + PNVVT
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+V++D   K GK+ EA  L   MI  G+ PD  TY +L+DGFC    ++ A ++   M 
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query: 253 SMGC 256
           S GC
Sbjct: 396 SKGC 399



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 14/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++  L K+   D   +LF  +   G+  ++ T++ILI  FC  GR   G  +L  ++
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +    P+VVTF+ LI              D   K+G + +A+EL  +M  + + P+ +TY
Sbjct: 326 KRKINPNVVTFSVLI--------------DSFVKEGKLREAEELHKEMIHRGIAPDTITY 371

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           TS+I GFC  N  ++A ++   M+ +G  PN+ TFN++++  CK  ++D+   L   M  
Sbjct: 372 TSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSL 431

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            GV  D  TYNTL+ GFC  G++N AKELF  M S
Sbjct: 432 RGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F+ M  M      + ++NI++G       +D    L + +    + P++ T S+
Sbjct: 280 DNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   ++     PD +T+TSLI                     K 
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  T+N +I+G CK   +D   ELF KM  + V  + VTY ++I+GFC     N AK
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+ + V PN+VT+ +++D LC NG+ ++A  + + + +  +  D   YN ++ G 
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +V+ A +LF S+   G
Sbjct: 519 CNASKVDDAWDLFCSLPLKG 538



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F++++    K         L K +   G+ PD  T++ LI+ FCK   +     +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           +  ++     P++ TF  LI   CK                     D +TYNT+I G C+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AKELF +M  + V PN+VTY  ++ G C   +  +A  +F ++    ++ ++  
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  +C   K+D+A  L   +   GV+P   TYN ++ G C  G ++ A+ LF  ME
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME 570

Query: 253 SMG 255
             G
Sbjct: 571 EDG 573



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI++    K    D  L LF++++  G+  D  T++ LI  FC++G+++     
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN----- 455

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +  F   V       +   P+ +TY  ++DGLC  G  +KA E+F K++   ++ 
Sbjct: 456 ---VAKELFQEMVS------RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y  +I G C A+  ++A  LF  +  +GV+P V T+N+++  LCK G + EA  L 
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G  PD +TYN L+      G    + +L   ++  G
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I ++ +   + K    D    L  +M+ K +  N+ T + +I  FC       A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G +PN +TF+ +++ LC  G++ EA  L+D M++ G +PD  T NTL++G CL
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 238 TGRVNHAKELFVSMESMGC 256
           +G+   A  L   M   GC
Sbjct: 206 SGKEAEAMLLIDKMVEYGC 224



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 17/184 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++ I+L  L  N   +  L +F+++  + +  D+  ++I+I+  C   +V   + 
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +       C  P        +K  KP   TYN +I GLCK+G + +A+ LF KM++    
Sbjct: 530 LF------CSLP--------LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  TY  +IR      D  ++ +L  E+   G   +  T  +++D L  +G++ +  S 
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML-SDGRLKK--SF 632

Query: 213 LDLM 216
           LD++
Sbjct: 633 LDML 636


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ + +F+  ++     P V SFN+++  + +       L L +R+N  G  PD  TH+I
Sbjct: 232 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 291

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L++  C+   VS G  VL R+ R     P+VVTFTS+I   CK                 
Sbjct: 292 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 351

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K G +  A E++ +M      P+VVT++S+I G+C     ++A
Sbjct: 352 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 411

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R++ +M    +QPNV TF++I+  LCK  + DEA  LL +L ++  + P AF YN ++D
Sbjct: 412 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVID 471

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   ME  GC
Sbjct: 472 VLCKCGKVDEANLIRKGMEEKGC 494



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 16/199 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            A+ ++  M R+   PP V +F+ ++    +    D  L ++  +    + P++YT SI+
Sbjct: 375 SAVEVYQQMTRLR-CPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSII 433

Query: 78  INCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           I+  CK  R      +L  + LR    PD+           P A  YN +ID LCK G V
Sbjct: 434 IHSLCKQNRSDEAIGLLNELNLR----PDIA----------PQAFIYNPVIDVLCKCGKV 479

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  +   M++K  +P+  TYT +I G+C  +  +EA   F EM++ G  P+ +T N  
Sbjct: 480 DEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCF 539

Query: 197 MDELCKNGKMDEASSLLDL 215
           +  L K G  +E   ++ L
Sbjct: 540 ISCLLKAGMPNEVDHVMRL 558


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++G   K K  D    L + +   GL P+L T++++IN  C++GR+     V
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  + R  F PD VT+ +L+   CK                    PD +TY ++I+ +CK
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A E F +M  + ++PN VTYTS+I GF      +EA R++ EM+  G  P +VT
Sbjct: 356 AGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVT 415

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++  C +G+M+EA  LL  M   G+ PD  +Y+T++ GFC    ++ A ++   M 
Sbjct: 416 YNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMV 475

Query: 253 SMG 255
             G
Sbjct: 476 EKG 478



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 137/256 (53%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   MLR +  PP V ++  ++  + K  + +  +  F +++  GL P+  T++ 
Sbjct: 325 HQALVLHSEMLR-NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN F + G +   + +   ++RS F P +VT+ +L+                     K 
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG 443

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G C+   +D+A ++  +M +K V P+ +TY+S+I+G C     NEA 
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+++ + P+  T+  +++  CK G ++EA +L D MI+ G  PD  TYN L++G 
Sbjct: 504 DLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGL 563

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L + +
Sbjct: 564 NKQARTREAKRLLLKL 579



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 131/250 (52%), Gaps = 30/250 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I+D M+R    PP + ++N +L     +   +  + L + +   GL PD+ ++S 
Sbjct: 395 DEAYRIWDEMIR-SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I  FC+   +   F +   ++               K   PDAITY+++I GLC+Q  +
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVE--------------KGVSPDAITYSSLIQGLCEQRRL 499

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +LF +M +K++ P+  TYTS+I G+C   D NEA  L  EM+ +G  P+ VT+NV+
Sbjct: 500 NEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVL 559

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD---------------GFCLTGRV 241
           ++ L K  +  EA  LL  +      P+  TY+TL++               GFC+ G +
Sbjct: 560 INGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLM 619

Query: 242 NHAKELFVSM 251
           N A ++F SM
Sbjct: 620 NEADQVFESM 629



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 16/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +AL I D + +++   P V S+N +L  + +  K       +++ + ++G+  ++++++I
Sbjct: 150 KALNIVD-LAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNI 208

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +  G      + R+               C P+ +TYNT+I   CK   +
Sbjct: 209 LIRGFCAAGNLEMGLRFFEEMERN--------------RCLPNVVTYNTVIGAYCKLKRI 254

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +L   M  + ++PN++TY  VI G C      E   +  EM  +G  P+ VT+N +
Sbjct: 255 DEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTL 314

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G   +A  L   M+++G+ PD  TY +L++  C  G +N A E F  M   G
Sbjct: 315 VNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 36/242 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    + +  D    +   +   G+ PD  T+S LI   C+  R++    +
Sbjct: 446 PDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDL 505

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD  T+TSLI   CK                    PD +TYN +I+GL K
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNK 565

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTY---------------TSVIRGFCYANDWNEAKRL 177
           Q    +AK L LK+      PN +TY                ++I+GFC     NEA ++
Sbjct: 566 QARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQV 625

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M+ +  +PN   +NVI+   C++G + +A  L   M+  G  P   T   L+     
Sbjct: 626 FESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYS 685

Query: 238 TG 239
            G
Sbjct: 686 EG 687



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 40/225 (17%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L + +  +    LF+ + +  L PD +T++ LIN +CK G ++    +
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL 540

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIID---- 128
              +++  F PD VT+  LI                         P+ ITY+T+I+    
Sbjct: 541 HDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSD 600

Query: 129 -----------GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C +G +++A ++F  M  +N KPN   Y  +I G C   + ++A +L
Sbjct: 601 IEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKL 660

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           + EM+D G  P+ VT   ++  L   G MDE    L+L+I+  +R
Sbjct: 661 YKEMVDFGFIPHTVTIIALVKALYSEG-MDEQ---LNLVIRDILR 701



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 36/177 (20%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------- 161
           +C   +  ++ ++       F++KA  +    K     P V++Y ++             
Sbjct: 127 MCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIF 186

Query: 162 -----------------------IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
                                  IRGFC A +     R F EM      PNVVT+N ++ 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK  ++DEA  LL  M   G+ P+  TYN +++G C  GR+     +   M+  G
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV--VTYTSVIRGFCYANDWNEAKRLFI 179
           T   +   L +    +K    F  +KD     N     +  V++   Y N   +A  +  
Sbjct: 97  TAQNLAQDLAENSVDEKGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVD 156

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
                G  P V+++N I+D + +  K +  A  +   MI  GV  + F+YN L+ GFC  
Sbjct: 157 LAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAA 216

Query: 239 GRVNHAKELFVSMESMGC 256
           G +      F  ME   C
Sbjct: 217 GNLEMGLRFFEEMERNRC 234


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 14/226 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +FN ++  L         L++F  +   G  P + T+SIL++  CK       
Sbjct: 157 PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQA 216

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
            V+L   +R+             K C+PD +TYN +I+ +C +G VD+A  +   +    
Sbjct: 217 MVLLDE-MRA-------------KGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG 262

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            KP+ VTYT V++  C +  W E + LF EM      P+ VTFN I+  LC+ G +D A 
Sbjct: 263 CKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAI 322

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            ++D M +HG  PD  TY+++LDG C  GRV+ A EL   ++S GC
Sbjct: 323 KVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 368



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 137/295 (46%), Gaps = 57/295 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD ML    SP  V +++I+L    K   Y   + L   + + G  PD+ T+++L
Sbjct: 180 DALAVFDDMLHRGCSPS-VVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVL 238

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF---------------------------- 109
           IN  C  G V     +L  +      PD VT+                            
Sbjct: 239 INAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKC 298

Query: 110 -----------TSL---------IKV--------CKPDAITYNTIIDGLCKQGFVDKAKE 141
                      TSL         IKV        C PD +TY++I+DGLC  G VD A E
Sbjct: 299 APDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVE 358

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  ++K    KP+ + YT+V++G C    W  A+ L  EM+     P+ VTFN ++  LC
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G +D A  +++ M ++G  PD  TYN+++DG C    ++ A EL  +++S GC
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGC 473



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + D+M   H   P + +++ +L  L      D  + L  RL S G  PD   ++ 
Sbjct: 319 DRAIKVVDHMSE-HGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 377

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   C + +  H   ++  ++ S   PD VTF ++I                       
Sbjct: 378 VLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG 437

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYN+IIDGLC +  +D A EL   ++    KP++VT+ ++++G C  + W +A+
Sbjct: 438 CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAE 497

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L + MM     P+  TFN ++  LC+ G + +A   L +M ++G  P+  TYN ++D  
Sbjct: 498 QLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDAL 557

Query: 236 CLTGRVNHAKELFVSM 251
              G+   A +L   M
Sbjct: 558 LKAGKTQEALKLLSGM 573



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++  L +    D  + +   ++  G  PD+ T+S +++  C +GRV     +
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L R+      PD + +T+++K                      C PD +T+NT+I  LC+
Sbjct: 360 LSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQ 419

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A ++  +M +    P++VTY S+I G C     ++A  L   +   G +P++VT
Sbjct: 420 KGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVT 479

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++  LC   + ++A  L+  M+     PDA T+NT++   C  G +  A E    M 
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539

Query: 253 SMGC 256
             GC
Sbjct: 540 ENGC 543



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 119/280 (42%), Gaps = 58/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++  L +    D  + + ++++  G  PD+ T++ +I+  C    +     
Sbjct: 404 PPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAME 463

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L  +      PD+VTF +L+K                      C PDA T+NT+I  LC
Sbjct: 464 LLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLC 523

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G + +A E    M +    PN  TY  V+     A    EA +L   M +    P+++
Sbjct: 524 QKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLI 581

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----------------------- 228
           T+N ++  + K GKM+EA  LL +M+ +G+ PD  TY                       
Sbjct: 582 TYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRL 641

Query: 229 ------------NTLLDGFCLTGRVNHAKELFVSMESMGC 256
                       N +L GFC   R + A + F  M S GC
Sbjct: 642 QDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGC 681



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)

Query: 29  MHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           MH   PP  ++FN ++  L +       +   K +   G  P+  T++I+++   K G+ 
Sbjct: 504 MHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKT 563

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
                +L  +                    PD ITYNT+I  + K G +++A +L   M 
Sbjct: 564 QEALKLLSGMTNG----------------TPDLITYNTVISNITKAGKMEEALDLLRVMV 607

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
              + P+ +TY S+  G C  +  + A R+   + D G+ P+   +N I+   C+N + D
Sbjct: 608 SNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTD 667

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            A      M+  G  PD  TY  LL+       ++ AK+L V++ S+G
Sbjct: 668 IAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLG 715



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 54/251 (21%)

Query: 43  LGCLAKNKHYDTVLSLFKRLNSTG-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           L  L + +  D  L+L   + S G     L   +   +ILI   C  GRV+    V   +
Sbjct: 65  LRSLIQREEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATL 124

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL--------------- 142
             S                    +TYNT+++G C+ G ++ A+ L               
Sbjct: 125 GASATV-----------------VTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNP 167

Query: 143 -----------------FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
                            F  M  +   P+VVTY+ ++   C A+ + +A  L  EM  +G
Sbjct: 168 LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKG 227

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P++VT+NV+++ +C  G +DEA ++L  +  HG +PDA TY  +L   C + R    +
Sbjct: 228 CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVE 287

Query: 246 ELFVSMESMGC 256
           ELF  M S  C
Sbjct: 288 ELFAEMASNKC 298



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++NI++  L K       L L   +  T   PDL T++ +I+   K G++     +
Sbjct: 545 PNQSTYNIVVDALLKAGKTQEALKLLSGM--TNGTPDLITYNTVISNITKAGKMEEALDL 602

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L  ++ +  +PD +T+ SL   +C+                    PDA  YN I+ G C+
Sbjct: 603 LRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQ 662

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
               D A + F  M      P+  TY  ++    Y    +EAK+L + +   GV
Sbjct: 663 NWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 24/246 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           SP  V ++N ++    +  H D    L   + S  + PD YT++ LI   C  GRV+   
Sbjct: 107 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 163

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +L  +LR    P+VVT+T L+                     K C P+ +TYN II+G+
Sbjct: 164 SLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G VD A+EL  ++     +P+ V+YT++++G C +  W++ + LF EMM++   PN 
Sbjct: 224 CREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTF++++   C+ G ++ A  +L+ M +HG   +    N +++  C  GRV+ A +L   
Sbjct: 284 VTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLND 343

Query: 251 MESMGC 256
           M S GC
Sbjct: 344 MGSYGC 349



 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D MLR     P V ++ ++L  + +N  ++  +++   + + G  P++ T++++
Sbjct: 161 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 219

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+ GRV     +L R+    F PD V++T+L+K                      C
Sbjct: 220 INGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 279

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 280 MPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFK 339

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L   M      P+ ++YT+V++G C A  W++AK L  EM+     PN VTFN  +  LC
Sbjct: 340 LLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILC 399

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +++A  L++ M +HG      TYN L++GFC+ G ++ A ELF SM
Sbjct: 400 QKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 449



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 22/244 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHG 90
           +P P S+    L  L   +     + L +R  S  G  PD+Y  + LI   C+ GR S  
Sbjct: 39  APNPASAH---LRRLIAREDLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDA 95

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------PDAITYNTIIDGLCK 132
             VL     S    DV  + +L+   C+                 PDA TY  +I  LC 
Sbjct: 96  ARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCD 155

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V  A  L   M  +  +PNVVTYT ++   C  + + +A  +  EM  +G  PN+VT
Sbjct: 156 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVT 215

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NVI++ +C+ G++D+A  LL+ +  +G +PD  +Y TLL G C + R +  +ELF  M 
Sbjct: 216 YNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM 275

Query: 253 SMGC 256
              C
Sbjct: 276 EKNC 279



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 26/246 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN  +  L +    +  + L ++++  G    + T++ L+N FC  G +     
Sbjct: 385 PPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSAL- 443

Query: 93  VLGRILRSC-FTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
               + RS    P+ +T+T+L+                       C P+ +T+N ++   
Sbjct: 444 ---ELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++GF+++A EL  +M +    PN++TY +++ G        +A  L   ++ +GV P+V
Sbjct: 501 CQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDV 560

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +TF+ I+  L K  +++EA  L  ++   G+RP A  YN +L G C    +++A + F  
Sbjct: 561 ITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAY 620

Query: 251 MESMGC 256
           M S GC
Sbjct: 621 MVSNGC 626



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++       H D+ L LF+ +      P+  T++ L+   C   R+     ++ 
Sbjct: 423 VVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVA 479

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +LR    P+VVTF  L+                       C P+ ITYNT++DG+ K  
Sbjct: 480 EMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 539

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             + A EL   +  K V P+V+T++S+I      +   EA +LF  + D G++P  V +N
Sbjct: 540 SSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYN 599

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK  ++D A      M+ +G  P+  TY  L++G    G +  A++L   + S 
Sbjct: 600 KILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSR 659

Query: 255 G 255
           G
Sbjct: 660 G 660



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 21/217 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R  P  P   ++  +L  L   +  D    L   +      P++ T ++L++ FC+ G
Sbjct: 445 LFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKG 504

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     ++ +++    TP+++T+ +L+                     K   PD IT++
Sbjct: 505 FLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFS 564

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +II  L K+  +++A +LF  ++D  ++P  V Y  ++ G C   + + A   F  M+  
Sbjct: 565 SIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSN 624

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           G  PN  T+ ++++ L   G + EA  LL ++   GV
Sbjct: 625 GCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD ++R     P V+ + I+L   A       + S    +   G+ PD +  +I+
Sbjct: 290 EARNIFDSLIR-KGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIM 348

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            N + K   +     +  ++ +   +P VV               Y  +ID LCK G VD
Sbjct: 349 FNAYAKKAMIDEAMHIFDKMRQQWLSPGVVN--------------YGALIDALCKLGRVD 394

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M ++ V P++  ++S++ G C  + W +A++LF E++DQG++ N   FN++M
Sbjct: 395 DAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILM 454

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC+ G++ EA  L+DLM++  VRPD  +YNTL+DG CLTGR++ A +L   M S+G
Sbjct: 455 CNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIG 512



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 68/305 (22%)

Query: 6   SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK---HYDTVLSLFKRL 62
           +G     ++  ++AL +FD ML  +  P  V +FN +L  +++ +     + V+SLF R+
Sbjct: 22  AGRARSGSLGLDDALKLFDEML-TYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRM 80

Query: 63  N---STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF----------------- 102
               S  + P   T++ILI CFC+MGR+ HGF   G IL++ +                 
Sbjct: 81  IRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCD 140

Query: 103 --------------------TPDVVTFTSLIK-VCK-----------------------P 118
                               T +V+++  L+K +C                        P
Sbjct: 141 AKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTP 200

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + +TY T+IDGLCK   VD+AK +F  M DK V+PN  TYT +I G+     W E  ++ 
Sbjct: 201 NVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQML 260

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM   G+QP+ V + V++D LCKNG+  EA ++ D +I+ G++P    Y  LL G+   
Sbjct: 261 QEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATE 320

Query: 239 GRVNH 243
           G ++ 
Sbjct: 321 GALSE 325



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ IFD M R     P V ++  ++  L K    D  +  F ++ + G+ PD++  S 
Sbjct: 359 DEAMHIFDKM-RQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSS 417

Query: 77  LINCFCKMGRVSHG----FVVLGRILRS------------CFTPDVVTFTSLIKV----- 115
           L+   C + +        F VL + +R             C    V+    LI +     
Sbjct: 418 LVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVD 477

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD I+YNT++DG C  G +D+A +L   M    +KP+  TY +++ G+C A   ++A 
Sbjct: 478 VRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAY 537

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+ +G+ P VVT+N I+  L + G+  EA  L   MI +  + D +TY  +L+G 
Sbjct: 538 SLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGL 597

Query: 236 CLTGRVNHAKELFVSM 251
           C    V+ A ++F S+
Sbjct: 598 CRNNFVDEAFKMFQSL 613



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D MLR+   P  V S+N ++         D    L   + S GL PD +T++ L
Sbjct: 465 EAQRLIDLMLRVDVRPD-VISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTL 523

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +CK  R+   + +   +L    TP VVT              YNTI+ GL + G   
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPGVVT--------------YNTILHGLFQIGRFC 569

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKEL+L M +   K ++ TYT ++ G C  N  +EA ++F  +  + +Q ++ T N+++
Sbjct: 570 EAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMI 629

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K G+ ++A  L   +  +G+ PD  TY  + +     G +    ELF +ME  G
Sbjct: 630 GALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENG 687



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 22/261 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   T   +EA  + D M+ +   P   + +N +L    K +  D   SLF+ +   GL
Sbjct: 490 DGHCLTGRIDEAAKLLDVMVSIGLKPDEFT-YNTLLHGYCKARRIDDAYSLFREMLMKGL 548

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            P + T++ +++   ++GR      +   ++ +    D+ T+T ++              
Sbjct: 549 TPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFK 608

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  K  + D  T N +I  L K G  + A +LF  +    + P+V TY  +     
Sbjct: 609 MFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLI 668

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 E   LF  M + G  PN    N ++  L   G +  A   L  + +     +A 
Sbjct: 669 KEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLEAS 728

Query: 227 TYNTLLDGFCLTGRVNHAKEL 247
           T + L+  +        AK L
Sbjct: 729 TTSMLISIYSRAEYQQLAKSL 749


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 17/222 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+NI++         D   SLF  +   G+ PD+ T++ +I+  CK   V     V
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++               K  KP+ +TYNTIIDGLCK   VD A+ +F KM DK VKP
Sbjct: 248 FQQMVE--------------KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKP 293

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY ++I G C A   + A+ +F +M+D+GV+P+ VT+N I+D LCK   +D+A  + 
Sbjct: 294 SNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVF 353

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI  GV+PD  TY  ++DG C    V+ A+ +F  M   G
Sbjct: 354 QQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG 395



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 141/270 (52%), Gaps = 35/270 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN------STGLFPD 70
           ++AL +FD +L +H  P  V + N +L  +++ K   +      R N      S  + PD
Sbjct: 25  HDALKLFDELL-LHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPD 83

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------- 114
             T+SI+I CFC++GR+  GF   G IL++ +  D +    L+K                
Sbjct: 84  CCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLL 143

Query: 115 ------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM---KDKNVKPNVVTYTSVIRGF 165
                  C+   ++YNT++ GLC +   ++A+EL   M   +D +  P+VV+Y  VI GF
Sbjct: 144 RQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGF 203

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 ++A  LF+EM   GV P+VVT+N I+D LCK  ++D A  +   M++ GV+P+ 
Sbjct: 204 FNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNN 260

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYNT++DG C    V+ A+ +F  M   G
Sbjct: 261 VTYNTIIDGLCKAQEVDMAEGVFQKMVDKG 290



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 132/239 (55%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FN ++   AK    D V+ +F ++   GL P++ T+  LI+  CK+GRV    + 
Sbjct: 503 PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ 562

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++    TP+ V F SL+                     +  +PD + +NT++  LCK
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK 622

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +A+ L   M    +KP+V++Y ++I G C+A+  +EA +L   M+  G++PN+V+
Sbjct: 623 EGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS 682

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N ++   CK G++D A  L   M++ GV P   TYNT+L+G   +GR + A+EL+V+M
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNM 741



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 134/250 (53%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P V ++ ++L  L KN   +   SLF  +   G+ P +  + I+++ + K G 
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +S    +L  ++ +  +P+   F ++I                     +   P+ +TY T
Sbjct: 486 LSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +ID LCK G VD A   F +M ++ V PN V + S++ G C  + W + + LF+EM++QG
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++P++V FN ++  LCK G++ EA  L+D M+  G++PD  +YNTL+DG C   R++ A 
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 246 ELFVSMESMG 255
           +L   M S G
Sbjct: 666 KLLDGMVSAG 675



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K +  D    +F+++   G+ P+  T++ +I+  CK   V     V
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     P  VT+ ++I                     +  KPD +TYNTIIDGLCK
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +DKA+ +F +M DK VKP+ +TYT +I G C A   + A+ +F +M+D+GV+PN  T
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++      G+ +E    +  M  H + PD FTY  LLD  C  G+ N A+ LF SM 
Sbjct: 403 YNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462

Query: 253 SMG 255
             G
Sbjct: 463 RKG 465



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 23/236 (9%)

Query: 26  MLRMHPSPP---PVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILIN 79
           +LR  P       V S+N +L  L   +  +    L   +     +   PD+ +++I+IN
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            F   G+V   +        S F    V+         PD +TYNTIIDGLCK   VD+A
Sbjct: 202 GFFNEGQVDKAY--------SLFLEMGVS---------PDVVTYNTIIDGLCKAQEVDRA 244

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           +++F +M +K VKPN VTY ++I G C A + + A+ +F +M+D+GV+P+ VT+N I+D 
Sbjct: 245 EDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDG 304

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK   +D A  +   MI  GV+PD  TYNT++DG C    ++ A+ +F  M   G
Sbjct: 305 LCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  M+     P  V+ +N ++  L K +  D    +F+++   G+ P   T++ +I+  
Sbjct: 247 VFQQMVEKGVKPNNVT-YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGL 305

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK   V     V  +++     PD VT+ ++I                     K  KPD 
Sbjct: 306 CKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TY  IIDGLCK   VD+A+ +F +M DK VKPN  TY  +I G+     W E  +   E
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKE 425

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M    ++P+V T+ +++D LCKNGK +EA SL D MI+ G++P    Y  +L G+   G 
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 241 VNHAKELFVSMESMG 255
           ++   +L   M + G
Sbjct: 486 LSEMHDLLNLMVANG 500



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ M+    +P  V  FN ++  L     ++ V  LF  + + G+ PD+   + 
Sbjct: 557 DDAVLQFNQMINEGVTPNNVV-FNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++   CK GRV     ++  ++     PDV+++ +LI                       
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ ++YNT++ G CK G +D A  LF +M  K V P V TY +++ G   +  ++EA+
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ M+      ++ T+++I+D  CKN   DEA  +   +    ++ D  T+N ++DG 
Sbjct: 736 ELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGL 795

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   A +LF ++ + G
Sbjct: 796 FKGGRKEDAMDLFAAIPANG 815



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 17/239 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  + D M+ M   P  +S   ++ G C A     D  + L   + S GL P++ +++ 
Sbjct: 628 EARRLIDSMVCMGLKPDVISYNTLIDGHCFAS--RMDEAVKLLDGMVSAGLKPNIVSYNT 685

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +CK GR+ + + +   +LR   TP V T              YNTI++GL + G  
Sbjct: 686 LLHGYCKAGRIDNAYCLFREMLRKGVTPGVET--------------YNTILNGLFRSGRF 731

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+EL++ M       ++ TY+ ++ GFC  N ++EA ++F  +    +Q +++TFN++
Sbjct: 732 SEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIM 791

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D L K G+ ++A  L   +  +G+ P   TY  + +     G +     LF  ME  G
Sbjct: 792 IDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSG 850



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A C+F  MLR   +P  V ++N +L  L ++  +     L+  +  +     + T+SI
Sbjct: 697 DNAYCLFREMLRKGVTPG-VETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSI 755

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGF 135
           +++ FCK                +CF      F SL  +  + D IT+N +IDGL K G 
Sbjct: 756 ILDGFCK---------------NNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGR 800

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            + A +LF  +    + P+VVTY  +           E   LF  M   G  PN    N 
Sbjct: 801 KEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNA 860

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           ++ +L   G++  A + L  + +     +A T + L+  F       HAK L
Sbjct: 861 LIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSL 912


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M +     P ++++  +L   A       +  L   +   G+ P+ Y  SIL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G+V    +V  ++ +    PD VT              Y T+I  LCK G V+
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--------------YGTVIGILCKSGRVE 426

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I   C  + W++AK L +EM+D+G+  + + FN I+
Sbjct: 427 DAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSII 486

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L DLM++ GV+P+  TY+TL+DG+CL G+++ A +L  SM S+G
Sbjct: 487 DSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 28/258 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK    D  + +F ++   GL PD  T+  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCK 117
             CK GRV        +++    +P  + + SLI                       +C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC- 476

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D I +N+IID  CK+G V ++++LF  M    VKPN++TY+++I G+C A   +EA +L
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKL 536

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  G++P+ VT+N +++  CK  +M++A  L   M   GV PD  TYN +L G   
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 238 TGRVNHAKELFVSMESMG 255
           T R   AKEL+V +   G
Sbjct: 597 TRRTAAAKELYVGITESG 614



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 29/267 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLY 72
             +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L 
Sbjct: 35  AEDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLC 92

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T+ ILI   C  GR+  GF  LG +++  F  D + FT L+K                  
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 115 ----VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYA 168
                C P+  +YN ++ GLC +    +A EL   M D   +  P+VV+YT+VI GF   
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D ++A   + EM+D+G+ PNVVT+N I+  LCK   MD+A  +L  M+++GV P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N+++ G+C +G+   A      M S G
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 12/215 (5%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM--- 188

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVVTY S
Sbjct: 189 ---PDDG------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNS 239

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 114/259 (44%), Gaps = 51/259 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                +L     P+VVT              YN+II  LCK   +DKA E+   M    V
Sbjct: 220 GTYHEMLDRGILPNVVT--------------YNSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS- 210
            PN  TY S++ G+C +    EA     +M   GV+P+VVT+N +MD LCKNG+  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 211 ----------------------------------SLLDLMIQHGVRPDAFTYNTLLDGFC 236
                                              LLDLM+++G+ P+ + ++ L+  + 
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 237 LTGRVNHAKELFVSMESMG 255
             G+V+ A  +F  M   G
Sbjct: 386 KQGKVDQAMLVFSKMRQQG 404



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ M+    SP  +  +N ++  L     +D    L   +   G+  D    + +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           I+  CK GRV     +   ++R    P+++T+++LI   C                    
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +TYNT+I+G CK   ++ A  LF +M+   V P+++TY  +++G         AK 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L++ + + G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++    
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALL 665

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR + AK+LF ++ + G
Sbjct: 666 KVGRNDEAKDLFAALSANG 684



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +FD M+R+   P  ++   ++ G CLA     D    L   + S G+ PD  T++ 
Sbjct: 497 ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNT 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDI--------------ITYNIILQGLFQTRRT 600

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++ + +   +  + TY  ++ G C  N  +EA R+F  +    +Q    TFN++
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G+ DEA  L   +  +G+ PD  TY+ + +     G +    +LF+SME  GC
Sbjct: 661 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGC 720



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++NI+L  L KN   D  L +F+ L  T L  +  T +I+I    K+GR      +  
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFA 678

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +  +   PDV T              Y+ + + L +QG +++  +LFL M++     N 
Sbjct: 679 ALSANGLVPDVRT--------------YSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
               S++R      D   A      + ++       T ++ +D L   GK  E    L
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD-LLSGGKYQEYHRFL 781


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 23/207 (11%)

Query: 72  YTHSILINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIKV--------------- 115
           Y H+ LI+  C+ GRV+   VVL G + R C  PDVVT+  L++                
Sbjct: 164 YAHNPLIHALCERGRVADALVVLDGMLCRGC-APDVVTYNILLQAACKGRGYRQALELID 222

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                 C+P+ +TYN IID +C++G VD+A+EL   +  +  KPN V Y +V++GFC   
Sbjct: 223 FMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIE 282

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            W +A  +  EM+ +   PN  T NVI++ LC+ G + + +  L+ M +HG   +  TYN
Sbjct: 283 RWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYN 342

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
            ++ G C  G V+ A EL  +M+S GC
Sbjct: 343 AVISGMCEQGNVDSALELLSNMQSFGC 369



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D+M R     P   ++N+++  + +    D    L   L S G  P+   ++ +
Sbjct: 216 QALELIDFM-RAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTV 274

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +  FC + R      +L  ++R    P+  T   +I                       C
Sbjct: 275 LKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGC 334

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + +TYN +I G+C+QG VD A EL   M+    KP++VTY +V++G C A+ W +A+ 
Sbjct: 335 TANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEE 394

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L I+M      P+  TFN I+   C+ G + +A  +   M + G  P++ TY+T++ G  
Sbjct: 395 LMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLT 454

Query: 237 LTGRVNHAKELFVSMESMG 255
             G++  A EL   M + G
Sbjct: 455 KAGKMEQALELLNEMANKG 473



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D ML      P V ++NI+L    K + Y   L L   + + G  P+  T++++
Sbjct: 181 DALVVLDGML-CRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVI 239

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+  C+ G V     +L  +      P+ V + +++K                      C
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC 299

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T N II+ LC++G + K      KM       NVVTY +VI G C   + + A  
Sbjct: 300 PPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALE 359

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M   G +P++VT+N ++  LC   + ++A  L+  M Q+   PD  T+NT++  +C
Sbjct: 360 LLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWC 419

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A E+F  M   GC
Sbjct: 420 QKGLILQAFEVFKQMPEKGC 439



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 121/282 (42%), Gaps = 56/282 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I D M+R +  PP  ++ N+++  L +      V    ++++  G   ++ T++ +I+  
Sbjct: 290 ILDEMVREN-CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           C+ G V     +L  +      PD+VT+ +++K +C                     PD 
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            T+NTII   C++G + +A E+F +M +K   PN  TY+++I G   A    +A  L  E
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE 468

Query: 181 M----------------------------------MDQGVQPNVVTFNVIMDELCKNGKM 206
           M                                   D G+ P  V +N ++  LC+NGK 
Sbjct: 469 MANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKT 528

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           D A  +L  M+  G  PD  TY  L++G    G    A+EL 
Sbjct: 529 DYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELL 570



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 20/237 (8%)

Query: 23  FDYMLRM---HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
            D  LR+    P PP V   N ++  L +         + +   + G      T+  L++
Sbjct: 80  LDAALRLVGSSPRPPDVPLANRLVRDLCRRGRPADAARVVE---ACGPEATAATYGALVD 136

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            +C+ G +     V+G +      P  V  +S        A  +N +I  LC++G V  A
Sbjct: 137 GYCRAGLLEDARRVVGGM------PAHVQASS--------AYAHNPLIHALCERGRVADA 182

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             +   M  +   P+VVTY  +++  C    + +A  L   M  +G +PN VT+NVI+D 
Sbjct: 183 LVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDA 242

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +C+ G +D+A  LL+ +   G +P+   YNT+L GFC   R   A E+   M    C
Sbjct: 243 MCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC 299



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+FN ++    +         +FK++   G  P+  T+S +I    K G++     +
Sbjct: 406 PDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALEL 465

Query: 94  LGRILRSCFTPD---VVTFTSLIKVCK-----------------PDAITYNTIIDGLCKQ 133
           L  +    F  D    V   SL K  K                 P  + YNT++ GLC+ 
Sbjct: 466 LNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRN 525

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  D A ++   M      P+  TY  +I G  Y     EA+ L   +  + V  N +  
Sbjct: 526 GKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDVLSNSLIK 585

Query: 194 N 194
           N
Sbjct: 586 N 586


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 24/256 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R +   P    FNI++G   K+   D  + LF ++   GL PD  T+ I+++  
Sbjct: 365 LLDMMVR-NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPD 119
           C +G+V       GR++    TPD V F +LI                       +C P+
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGIC-PN 482

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            I +NT+++ LCK+G V +AK +F  M   +V+ +V+TY ++I G+C     +EA +L  
Sbjct: 483 NIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLE 542

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+  GV+PN VT+N +++  CKNG++++A SL   M   GV P   TY+T+L G     
Sbjct: 543 GMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQAR 602

Query: 240 RVNHAKELFVSMESMG 255
           R   AKEL++ M   G
Sbjct: 603 RTAAAKELYLWMIKSG 618



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 22/257 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+A+ +F  M R     P V ++N ++G L KN        +F  +   G  P+  T+ 
Sbjct: 289 PNDAIGVFKRMCR-DGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYG 347

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            L++ +   G +     +L  ++R+   PD   F  LI                     +
Sbjct: 348 TLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQ 407

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD +TY  ++D LC  G VD A   F ++  + + P+ V + ++I G C  + W++A
Sbjct: 408 GLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKA 467

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L +EM+ +G+ PN + FN +++ LCK G +  A ++ DLM++  V+ D  TYNTL+DG
Sbjct: 468 EELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDG 527

Query: 235 FCLTGRVNHAKELFVSM 251
           +CL G+V+ A +L   M
Sbjct: 528 YCLHGKVDEAAKLLEGM 544



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 22/245 (8%)

Query: 33  PPPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP V S+N ++ G L + +  DT   LF ++   GL PD+ T++ +I+   K   +    
Sbjct: 199 PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAA 258

Query: 92  VVLGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDGL 130
           VVL R++++   P+ +T  SL+                 ++C+    PD  TYNT++  L
Sbjct: 259 VVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYL 318

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G   +A+++F  M  +  KPN  TY +++ G+       +   L   M+  G+QP+ 
Sbjct: 319 CKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDH 378

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
             FN+++    K+GK+D+A  L   M + G+ PD  TY  ++D  C+ G+V+ A   F  
Sbjct: 379 YIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGR 438

Query: 251 MESMG 255
           + S G
Sbjct: 439 LISEG 443



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 33/281 (11%)

Query: 2   RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR 61
           +L+   E        + A   FD +L   P+   +   N  L   A++      +SLF+R
Sbjct: 21  KLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDAARHSPA-VAISLFRR 78

Query: 62  LNSTG---LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--- 115
           +       + P+L T+S++I+C  ++G +   F  LGR++RS +T + +TF+ L+K    
Sbjct: 79  MVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCD 138

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-----KDKNV 151
                              C P+  +Y  ++ GLC +    +A  L   M          
Sbjct: 139 KKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGY 198

Query: 152 KPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            P+VV+Y +VI G        + A  LF +M+DQG+ P+VVT+N I+  L K   MD+A+
Sbjct: 199 PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAA 258

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +L  M+++G  P+  T+N+LL G+C +G+ N A  +F  M
Sbjct: 259 VVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 31/243 (12%)

Query: 38  SFNIMLGCLAKNKHYDTVLSL-FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +F+ +L  L   K     + +  +R+   G  P++++++IL+   C   R      +L  
Sbjct: 128 TFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHT 187

Query: 97  IL-----RSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDG 129
           ++     R  + PDVV++ ++I                      +   PD +TYN+II  
Sbjct: 188 MMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISA 247

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K   +DKA  + ++M      PN +T+ S++ G+C +   N+A  +F  M   GV+P+
Sbjct: 248 LSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPD 307

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKE 246
           V T+N +M  LCKNG+  EA  + D M++ G +P++ TY TLL G+   G   +++H  +
Sbjct: 308 VFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLD 367

Query: 247 LFV 249
           + V
Sbjct: 368 MMV 370



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F  ++    +P  V   N++ G  A++K +D    L   +   G+ P+    + 
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDK-WDKAEELAVEMIGRGICPNNIFFNT 488

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV-------------- 115
           L+N  CK G V+    +   ++R     DV+T+ +LI       KV              
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ +TYNT+I+G CK G ++ A  LF +M  K V P +VTY+++++G   A     AK
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN-------------------------------- 203
            L++ M+  G++ ++ T+N+I+  LC+N                                
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDAL 668

Query: 204 ---GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G+ DEA  L   ++  G+ P+  TY  ++      G +    +LF+S+E  GC
Sbjct: 669 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGC 724



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N M+    KN   +   SLF+++ S G+ P + T+S ++    +  R +    +
Sbjct: 551 PNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKEL 610

Query: 94  LGRILRSCFTPDVVTFTSLI-----KVCKPDAI----------------TYNTIIDGLCK 132
              +++S    D+ T+  ++       C  DA+                T+N +ID L K
Sbjct: 611 YLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLK 670

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+AK+LF  +  + + PNVVTY  +++         E   LF+ +   G   N   
Sbjct: 671 GGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRM 730

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            N ++ +L + G++ +A   L  + ++    +A T  +L+
Sbjct: 731 LNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLV 770


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 22/244 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +++ +F  M   H  P   S  ++ L  L +     +    ++ +   G+ P + + +
Sbjct: 130 PLDSIRVFHKMQDFHCKPTEKSYISV-LAILVEENQLKSAFRFYRDMRKMGIPPTVTSLN 188

Query: 76  ILINCFCK----MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
           +LI  FCK    M +  H F  +                     C+PD+ TY T+I+GLC
Sbjct: 189 VLIKAFCKNSGTMDKAMHLFRTMSN-----------------HGCEPDSYTYGTLINGLC 231

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +   + +AKEL  +M+ K   P+VVTYTS+I G C  N+ +EA RL  +M D+ ++PNV 
Sbjct: 232 RFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVF 291

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++ +MD  CK G    A  +L+LMIQ  +RP+  +Y+TLL+G C  G++N A E+F  M
Sbjct: 292 TYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRM 351

Query: 252 ESMG 255
           +  G
Sbjct: 352 KLQG 355



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 15/220 (6%)

Query: 33  PPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP V+S N+++    KN    D  + LF+ +++ G  PD YT+  LIN  C+   +    
Sbjct: 181 PPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAK 240

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +L  +                K C P  +TY +II GLC+   VD+A  L   MKDKN+
Sbjct: 241 ELLQEME--------------TKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNI 286

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +PNV TY+S++ GFC     + A+ +   M+ + ++PN+++++ +++ LC  GK++EA  
Sbjct: 287 EPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALE 346

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + D M   G +PDA  Y  +++  C   R   A      M
Sbjct: 347 IFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEM 386



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +F KM+D + KP   +Y SV+      N    A R + +M   G+ P V + NV++   
Sbjct: 135 RVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAF 194

Query: 201 CKN-GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CKN G MD+A  L   M  HG  PD++TY TL++G C    +  AKEL   ME+ GC
Sbjct: 195 CKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGC 251



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++ +L  L      +  L +F R+   G  PD   +  ++NC C + R       
Sbjct: 323 PNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANF 382

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     P+ +T++  ++       T+N +I GLC     ++A +L+L +  + +  
Sbjct: 383 LDEMVLCGIKPNRITWSLHVR-------THNRVIHGLCTINNSNRAFQLYLSVLTRGISI 435

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V T+ S+++ FC   D  +  R+  EM+  G  P    ++ +++  C   K  +A  LL
Sbjct: 436 TVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAMKLL 495

Query: 214 DLMI 217
            L +
Sbjct: 496 QLQL 499



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 1/141 (0%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D  T++ +I  L        A+ L  +MK++ +        S+ R +   +   ++ R
Sbjct: 76  KHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIR 135

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M D   +P   ++  ++  L +  ++  A      M + G+ P   + N L+  FC
Sbjct: 136 VFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFC 195

Query: 237 L-TGRVNHAKELFVSMESMGC 256
             +G ++ A  LF +M + GC
Sbjct: 196 KNSGTMDKAMHLFRTMSNHGC 216


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 21/250 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+++L      P +  F  +LG L K  HY  V+SL +++   G+  +L T SILINCF 
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAI 121
           ++G  S  F V   IL+  + PD +T T+LIK +C                    + + +
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +Y T+I+GLCK G    A E+  ++  K V+ +VV Y ++I G C     N+A   + EM
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + + + P VVT+N ++  LC  G++ +A  LL  MI   + P  +T++ L+D FC  G+V
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKV 295

Query: 242 NHAKELFVSM 251
             AK +FV M
Sbjct: 296 KEAKNVFVVM 305



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L         + L  ++    + P +YT SIL++ FCK G+V     V
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCK 132
              +++    P++VT+ SL+       +V K              PD  +Y+ +I G CK
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A +LF +M  K + P+VVTY S+I G C +   + A +L  EM D+G  PN++T
Sbjct: 362 IKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIIT 421

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N ++D LCKN  +D+A  LL  +  H ++P   TYN L++G C +GR+  A+++F
Sbjct: 422 YNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVF 477



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 17/225 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F  M++    P  V+  ++M G CL      +   S+F  +   G+ PD++++SI
Sbjct: 297 EAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVN--EVNKAESIFNTMAQIGVAPDVHSYSI 354

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+ FCK+  V     +   +   C            K   PD +TYN++IDGLCK G +
Sbjct: 355 MISGFCKIKMVDEAMKLFEEM--HC------------KQIFPDVVTYNSLIDGLCKSGRI 400

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L  +M D+   PN++TY S++   C  +  ++A  L  ++ D  +QP+V T+N++
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNIL 460

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           ++ LCK+G++ +A  + + ++ +G   D +TYNT++ GFC  G V
Sbjct: 461 INGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  + K+K  +     +  + +  + P + T++ LI   C MG++     +L 
Sbjct: 209 VVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +++     P V TF+ L+              D  CK+G V +AK +F+ M  K+VKPN+
Sbjct: 269 KMILENINPTVYTFSILV--------------DAFCKEGKVKEAKNVFVVMMKKDVKPNI 314

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY S++ G+C  N+ N+A+ +F  M   GV P+V ++++++   CK   +DEA  L + 
Sbjct: 315 VTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEE 374

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M    + PD  TYN+L+DG C +GR+++A +L   M   G
Sbjct: 375 MHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG 414



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 55/110 (50%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           +  KN  P+++ +  ++     AN ++    L  +M   G+  N+VT +++++   + G 
Sbjct: 60  LHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGH 119

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              + S+   +++ G  PDA T  TL+ G CL G ++ A      + ++G
Sbjct: 120 NSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALG 169


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN +L  L         L LF ++      P++ T + L+N  C+ GRV     +
Sbjct: 149 PTVVTFNTLLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVAL 204

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L R+L     P+ +T+ +++  +CK                     P+ + YNTIIDGL 
Sbjct: 205 LDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLW 264

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G    A  LF++M++K + P++VTY  +I GFC +  W++A++L  EM+++ + P+VV
Sbjct: 265 KDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVV 324

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF+ +++   K GK  EA  L D M+   + P   TY++++DGFC   R++ A+ +F   
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLT 384

Query: 252 ESMGC 256
            + GC
Sbjct: 385 PTKGC 389



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 19/253 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F YM+R  P P  V  F  ++G + +    D V+SL K++    +  + Y+ +I
Sbjct: 63  DDAIDLFGYMVRSRPLPS-VIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTI 121

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           L+ CFC   ++       G+I +  F P VVTF +L+                 ++CKP+
Sbjct: 122 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPN 181

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +T+ T+++GLC++G V +A  L  +M +  ++PN +TY +++ G C   D   A  L  
Sbjct: 182 VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 241

Query: 180 EMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +M +   + PNVV +N I+D L K+G+  +A +L   M +  + PD  TYN +++GFC++
Sbjct: 242 KMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCIS 301

Query: 239 GRVNHAKELFVSM 251
           GR + A++L   M
Sbjct: 302 GRWSDAEQLLQEM 314



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  L K+  +    +LF  +    +FPD+ T++ +IN FC  GR S    +
Sbjct: 251 PNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQL 310

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L     PDVVTF++LI                     +   P  +TY+++IDG CK
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +D A+ +F     K   P+++T+ ++I G+C A   ++  +L  EM + G+  N +T
Sbjct: 371 QNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 430

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++   C+ G ++ A  LL  MI  GV P+  T NTLLDG C  G++  A E+F +M+
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 32/254 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N M+     +  +     L + +    + PD+ T S LIN F K G+      +
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEEL 345

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P  VT++S+I                     K C PD IT+NT+I G C+
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCR 405

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   +L  +M +  +  N +TYT++I GFC   D N A+ L  EM+  GV PNVVT
Sbjct: 406 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVT 465

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ-----------HGVRPDAFTYNTLLDGFCLTGRV 241
            N ++D LC NGK+ +A  +   M +           +GV PD  TYN L+ G    G+ 
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKF 525

Query: 242 NHAKELFVSMESMG 255
             A+EL+  M   G
Sbjct: 526 LEAEELYEEMPHRG 539



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 35/267 (13%)

Query: 24  DYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++M  + P+    P + +FN ++    + K  D  + L   +   GL  +  T++ LI+ 
Sbjct: 378 EHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 437

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------------- 116
           FC++G ++    +L  ++ S   P+VVT  +L+  +C                       
Sbjct: 438 FCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 497

Query: 117 --------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                   +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY+S+I G C  
Sbjct: 498 ASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           +  +EA ++F  M  +   P+VVTFN ++   CK G +D+   L   M Q G+  DA TY
Sbjct: 558 SRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITY 617

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
            TL+ GF     ++ A ++F  M S G
Sbjct: 618 ITLIYGFRKVDNIDGALDIFQEMISSG 644



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 25/230 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-----------GLFPDLYTHSILINCFC 82
           P V + N +L  L  N      L +FK +  +           G+ PD+ T++ILI   C
Sbjct: 461 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILI---C 517

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
                  G +  G+ L +    + +    ++    PD ITY+++IDGLCKQ  +D+A ++
Sbjct: 518 -------GLINEGKFLEAEELYEEMPHRGIV----PDTITYSSMIDGLCKQSRLDEATQM 566

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M  K+  P+VVT+ ++I G+C A   ++   LF EM  +G+  + +T+  ++    K
Sbjct: 567 FDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRK 626

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              +D A  +   MI  GV PD  T   +L G      +  A  +   ++
Sbjct: 627 VDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     +  I  ++A+ +F  M+   P P  V  F+ +   +AK K YD VL+L K
Sbjct: 156 ERLRSG----LVDIKADDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALCK 210

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
           ++   G+  +LYT SI+INCFC+  ++   F  +G+I++  + P+ +TF+          
Sbjct: 211 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFS---------- 260

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+I+GLC +G V +A EL  +M +   KP+++T  +++ G C +    EA  L  +
Sbjct: 261 ----TLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDK 316

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G QPN VT+  +++ +CK+G+   A  LL  M +  ++ DA  Y+ ++DG C  G 
Sbjct: 317 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 376

Query: 241 VNHAKELFVSMESMG 255
           +++A  LF  ME  G
Sbjct: 377 LDNAFNLFNEMEMKG 391



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++  L         L L  R+   G  PDL T + L+N  C  G+ +   ++
Sbjct: 254 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 313

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           + +++     P+ VT+  ++ V CK                     DA+ Y+ IIDGLCK
Sbjct: 314 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 373

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  LF +M+ K +  N++TY  +I GFC A  W++  +L  +M+ + + PNVVT
Sbjct: 374 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 433

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+V++D   K GK+ EA  L   MI  G+ PD  TY +L+DGFC    ++ A ++   M 
Sbjct: 434 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 493

Query: 253 SMGC 256
           S GC
Sbjct: 494 SKGC 497



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 14/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++I++  L K+   D   +LF  +   G+  ++ T++ILI  FC  GR   G  +L  ++
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +    P+VVTF+ LI              D   K+G + +A+EL  +M  + + P+ +TY
Sbjct: 424 KRKINPNVVTFSVLI--------------DSFVKEGKLREAEELHKEMIHRGIAPDTITY 469

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           TS+I GFC  N  ++A ++   M+ +G  PN+ TFN++++  CK  ++D+   L   M  
Sbjct: 470 TSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSL 529

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            GV  D  TYNTL+ GFC  G++N AKELF  M S
Sbjct: 530 RGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 564



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F+ M  M      + ++NI++G       +D    L + +    + P++ T S+
Sbjct: 378 DNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F K G++     +   ++     PD +T+TSLI                     K 
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  T+N +I+G CK   +D   ELF KM  + V  + VTY ++I+GFC     N AK
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+ + V PN+VT+ +++D LC NG+ ++A  + + + +  +  D   YN ++ G 
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 616

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +V+ A +LF S+   G
Sbjct: 617 CNASKVDDAWDLFCSLPLKG 636



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F++++    K         L K +   G+ PD  T++ LI+ FCK   +     +
Sbjct: 429 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           +  ++     P++ TF  LI   CK                     D +TYNT+I G C+
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AKELF +M  + V PN+VTY  ++ G C   +  +A  +F ++    ++ ++  
Sbjct: 549 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 608

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  +C   K+D+A  L   +   GV+P   TYN ++ G C  G ++ A+ LF  ME
Sbjct: 609 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME 668

Query: 253 SMG 255
             G
Sbjct: 669 EDG 671



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI++    K    D  L LF++++  G+  D  T++ LI  FC++G+++     
Sbjct: 499 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN----- 553

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +  F   V       +   P+ +TY  ++DGLC  G  +KA E+F K++   ++ 
Sbjct: 554 ---VAKELFQEMVS------RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 604

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y  +I G C A+  ++A  LF  +  +GV+P V T+N+++  LCK G + EA  L 
Sbjct: 605 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 664

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G  PD +TYN L+      G    + +L   ++  G
Sbjct: 665 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 706



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I ++ +   + K    D    L  +M+ K +  N+ T + +I  FC       A   
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G +PN +TF+ +++ LC  G++ EA  L+D M++ G +PD  T NTL++G CL
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303

Query: 238 TGRVNHAKELFVSMESMGC 256
           +G+   A  L   M   GC
Sbjct: 304 SGKEAEAMLLIDKMVEYGC 322



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++ I+L  L  N   +  L +F+++  + +  D+  ++I+I+  C   +V   + 
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 627

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +       C  P        +K  KP   TYN +I GLCK+G + +A+ LF KM++    
Sbjct: 628 LF------CSLP--------LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 673

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-----GKMD 207
           P+  TY  +IR      D  ++ +L  E+   G   +  T  +++D L  +      K  
Sbjct: 674 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDKANYFSKYH 733

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             S       Q     D++ +  LL   CL 
Sbjct: 734 NCSKSTSFWNQPEKPSDSWNWKCLLRLRCLA 764


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M+R     P V S+N +L    K       L++F  +   GL PD+ T + LI+  
Sbjct: 103 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 161

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           CK G +     ++ ++       + VTFT+LI   CK                    P  
Sbjct: 162 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 221

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN +I+G CK G +D A+EL  +M+ K VKP+VVTY+++I G+C   + + A +L  +
Sbjct: 222 VCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 281

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +GV P+ +T++ ++  LC+  ++++A  L + M+Q GV+PD FTY TL+DG C  G 
Sbjct: 282 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 341

Query: 241 VNHAKELFVSMESMG 255
           V  A  L   M   G
Sbjct: 342 VEKALSLHDEMIRKG 356



 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 130/245 (53%), Gaps = 21/245 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P + +FN M+  L K    +    +F  +   GL PD+ +++ L++ +CK+G +    
Sbjct: 77  AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 136

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGL 130
            V   + +    PDVVTFTSLI   CK                     + +T+  +IDG 
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+GF+D A     +M+   ++P+VV Y ++I G+C     + A+ L  EM  + V+P+V
Sbjct: 197 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 256

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ I+   CK G +D A  L   M++ GV PDA TY++L+ G C   R+N A ELF +
Sbjct: 257 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 316

Query: 251 MESMG 255
           M  +G
Sbjct: 317 MLQLG 321



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E+L +F  M +     P V +F  ++    K  + +  ++L  ++   GL  +  T + 
Sbjct: 133 HESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 191

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ FCK G +    + +  + +    P VV + +LI                     K 
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 251

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TY+TII G CK G +D A +L  KM  K V P+ +TY+S+IRG C     N+A 
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 311

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M+  GVQP+  T+  ++D  CK G +++A SL D MI+ GV PD  TY+ L++G 
Sbjct: 312 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 371

Query: 236 CLTGRVNHAKELFVSM 251
             + R   A  L   +
Sbjct: 372 SKSARTKEAHRLLFKL 387



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 119/211 (56%), Gaps = 25/211 (11%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           G+ P++YT++IL+   C  GR+     V+G +  +   P+ VT+ +L+            
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 116 ------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
                        KP+ +T+N++++GLCK G ++ A+++F +M  + + P+VV+Y +++ 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           G+C     +E+  +F EM  +G+ P+VVTF  ++   CK G +++A +L+  M + G+R 
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +  T+  L+DGFC  G ++ A    +++E M
Sbjct: 185 NEVTFTALIDGFCKKGFLDDA---LLAVEEM 212



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    K    D  L   + +   G+ P +  ++ LIN +CK+GR+     ++  +
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 247

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT++++I   CK                    PDAITY+++I GLC++  +
Sbjct: 248 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF  M    V+P+  TYT++I G C   +  +A  L  EM+ +GV P+VVT++V+
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 367

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           ++ L K+ +  EA  LL  +      PD   Y+                LL GFC+ G +
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 427

Query: 242 NHAKELFVSM 251
             A +++ SM
Sbjct: 428 KEADKVYQSM 437



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 71/282 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++    K    D    L + + +  + PD+ T+S +I+ +CK+G +   F +
Sbjct: 219 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 278

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             ++L+    PD +T++SLI+ +C                    +PD  TY T+IDG CK
Sbjct: 279 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 338

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYT--------------------------------- 159
           +G V+KA  L  +M  K V P+VVTY+                                 
Sbjct: 339 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK 398

Query: 160 -----------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                            ++++GFC      EA +++  M+D+  + +   +++++   C+
Sbjct: 399 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 458

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            G + +A S    M++ G  P++ +  +L+ G    G V  A
Sbjct: 459 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 500



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ ML++   P   + +  ++    K  + +  LSL   +   G+ PD+ T+S+
Sbjct: 308 NDACELFENMLQLGVQPDEFT-YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 366

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGF 135
           LIN   K  R      +L ++      PD + + +L+  C K +  +   ++ G C +G 
Sbjct: 367 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 426

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A +++  M D+N K +   Y+ +I G C   +  +A     +M+  G  PN  +   
Sbjct: 427 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 486

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++  L + G + EA + +  ++      DA     L+D
Sbjct: 487 LVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALID 524



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  GV PNV T+N+++  LC  G+++EA  ++  M   G  P+A TYNTL+  FC  G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 241 VNHAKELFVSMESMG 255
           ++ A+ +   M   G
Sbjct: 61  LDGAERVVSLMREEG 75



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++HGV P+ +TYN L+   C  GR+  A  +   M   GC
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGC 41


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L CLA+ +  +    LF++L +    P+++T +I+I+  CK G ++    
Sbjct: 160 PPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARA 215

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L R+     +PDVVT+ SLI                       C+PD +TYN +++  C
Sbjct: 216 LLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFC 275

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +++A   F +MK + V  NVVT+++ +  FC      EA +LF +M  +G++PN V
Sbjct: 276 KFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEV 335

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  L + M+Q GV  +  TY  L+DG C  G+V  A+++F  M
Sbjct: 336 TYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLM 395

Query: 252 ESMG 255
           E  G
Sbjct: 396 ERAG 399



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+      EA  +   M  +  SP  V ++N ++    K    + V  L   +   G 
Sbjct: 207 EGDLA-----EARALLARMKAIGCSPD-VVTYNSLIDGYGKCGELEEVEKLVGEMRGCGC 260

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+ T++ L+NCFCK GR+   +     + R     +VVTF+              T +
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFS--------------TFV 306

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D  CK G V +A +LF +M+ K +KPN VTYT ++ G C A   ++A  L  EM+ QGV 
Sbjct: 307 DAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVP 366

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            NVVT+ V++D LCK GK+ EA  +  LM + G+R +   Y TL+ G  +      A  L
Sbjct: 367 LNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSL 426

Query: 248 FVSMESMG 255
              M+  G
Sbjct: 427 LSEMKDKG 434



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M RM    P   ++  ++    K    D  L L   +   G+  ++ T+++L
Sbjct: 317 EAMKLFAQM-RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVL 375

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G+V+    V   + R+    + + +T+LI                     K  
Sbjct: 376 VDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGM 435

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   Y  +I GLC    +D+AK L  KM +  +KPN V YT+++     A   +EA  
Sbjct: 436 ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +MMD G +PN+VT+  ++D LCK G +DEA S  + M+  G+ P+   Y  L+DG C
Sbjct: 496 LLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLC 555

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++ A  L   M   G
Sbjct: 556 KNGRLDKAVLLLDEMIDKG 574



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 21/227 (9%)

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
           K+ +  LSL   +   G+  D+  +  LI   C + ++     +L ++      P+ V +
Sbjct: 418 KNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 110 TSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
           T+++  C                     +P+ +TY  ++DGLCK G +D+A   F KM D
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
             ++PNV  YT+++ G C     ++A  L  EM+D+G+  + V    +MD   K G + +
Sbjct: 538 LGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQD 597

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           A +L   MI  G++ D + Y   + GFC    +  A+E+   M   G
Sbjct: 598 AFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 25/242 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCFCKMGRVSHGFVV 93
           VS +  ++  L   +  D   SL  +++  GL P+  +YT+ I+  CF K  + S    +
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTN-IMDACF-KARKESEAIAL 496

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L +++ S F P++VT+ +L+  +CK                    P+   Y  ++DGLCK
Sbjct: 497 LQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCK 556

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA  L  +M DK +  + V  TS++ G     +  +A  L  +M++ G+Q ++  
Sbjct: 557 NGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYG 616

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   +   C    + EA  +L  MI++G+ PDA  YN L++     G +  A  L   ME
Sbjct: 617 YTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676

Query: 253 SM 254
           S+
Sbjct: 677 SL 678



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K    D  +S F ++   GL P++  ++ L++  CK GR+    ++
Sbjct: 507 PNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLL 566

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++    + D V  TSL              +DG  KQG +  A  L  KM +  ++ 
Sbjct: 567 LDEMIDKGMSLDNVVCTSL--------------MDGHLKQGNLQDAFALKAKMINSGLQL 612

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YT  + GFC  N   EA+ +  EM++ G+ P+ V +N ++++  K G M+EA+ L 
Sbjct: 613 DLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQ 672

Query: 214 DLM 216
           + M
Sbjct: 673 NEM 675



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 36/235 (15%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGC--LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D++L  HP P   SS ++ L    LA+ + +    SL  RL + G  P L    + +   
Sbjct: 60  DHLLS-HPLP---SSAHLCLAAHILARARLFPHSRSLLSRLLAPGHHPHLAASLVDL--- 112

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
                +    + LG   R    P VV                +T++  L  +G +D A  
Sbjct: 113 -----LHRAALALGP--RRSALPSVV----------------DTLLSLLADRGLLDDAVL 149

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
              ++++  V PN  T   ++   C A +   +  L   + +Q   PNV TFN+++D LC
Sbjct: 150 ALARVRELRVPPNTRTCNHIL--LCLARE--RSSELAWRLFEQLPAPNVFTFNIMIDFLC 205

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G + EA +LL  M   G  PD  TYN+L+DG+   G +   ++L   M   GC
Sbjct: 206 KEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGC 260


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 143/253 (56%), Gaps = 24/253 (9%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           T    EA+ +F++M+ ++   P + +  ++L  LAK++  D V  ++K++   G+  +++
Sbjct: 143 TKMKQEAIQVFEHMM-VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIH 201

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
            +++LI+  CK G V     +L  +   C  PD+ T+ +LI +                 
Sbjct: 202 VYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRM 261

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                KPD +TYN++I G CK+G + +A  LF +++D    PN VTYT++I G+C  ND 
Sbjct: 262 EREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDL 319

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++A RL  EM  QG+ P VVT+N I+ +LC+ G++ +A+ LL+ M +  + PD  T NTL
Sbjct: 320 DQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTL 379

Query: 232 LDGFCLTGRVNHA 244
           ++ +C  G +  A
Sbjct: 380 INAYCKIGDMKSA 392



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 68/298 (22%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           ++  E+ C+F          P + ++N ++    K   +   LS+  R+   G+ PD+ T
Sbjct: 223 LSEMESKCVF----------PDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVT 272

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------- 117
           ++ LI+ FCK GR+     +   I  +  TP+ VT+T+LI   C+               
Sbjct: 273 YNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCRLNDLDQALRLREEME 330

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT--------------- 157
                P  +TYN+I+  LC+ G +  A +L  +M +K ++P+ VT               
Sbjct: 331 AQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMK 390

Query: 158 --------------------YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
                               Y ++I GFC   + + AK L + M+D G  P+  T++ ++
Sbjct: 391 SALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLV 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  C     +    L D  ++ G+  D   Y  L+  FC   +V++AK++F  M+  G
Sbjct: 451 DGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKG 508



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D  L L + + + GL+P + T++ ++   C++GR+     +L  +      PD VT  +L
Sbjct: 320 DQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTL 379

Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I                        K D  TY  +I G CK   +D AKEL L M D   
Sbjct: 380 INAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGF 439

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY+ ++ G+C   +     +L  E + +G+  +   +  ++   CK  ++D A  
Sbjct: 440 SPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKK 499

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LM + G   D+  Y +L   +   G+ N A +L   M
Sbjct: 500 IFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 31/224 (13%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLF---------------PDLYTH--SILINCFCKM 84
           M+  L K KH  T  SL +++                     PD+ +H  S L+  +   
Sbjct: 84  MIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANT 143

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
                   V   ++ + F P +   T L+              + L K    D   +++ 
Sbjct: 144 KMKQEAIQVFEHMMVNGFRPHLHACTVLL--------------NSLAKDRLTDMVWKVYK 189

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           KM    V+ N+  Y  +I   C + D  +A  L  EM  + V P++ T+N ++   CK G
Sbjct: 190 KMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKG 249

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              EA S+ D M + G++PD  TYN+L+ GFC  GR+  A  LF
Sbjct: 250 MHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLF 293



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 57  SLFKRLNSTGLFPDLYTHSI-----LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
           +LFK + S+   P+ Y HS+     +I+   K   +     +L +I    F       ++
Sbjct: 62  ALFKWIESS--IPN-YKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSA 118

Query: 112 LIKVCK-PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
           L+++   PD  +  ++ ++          +A ++F  M     +P++   T ++      
Sbjct: 119 LVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKD 178

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              +   +++ +M   GV+ N+  +NV++   CK+G +++A +LL  M    V PD FTY
Sbjct: 179 RLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTY 238

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           NTL+  +C  G    A  +   ME  G
Sbjct: 239 NTLISLYCKKGMHYEALSVQDRMEREG 265


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M+R     P V S+N +L    K       L++F  +   GL PD+ T + LI+  
Sbjct: 245 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           CK G +     ++ ++       + VTFT+LI   CK                    P  
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN +I+G CK G +D A+EL  +M+ K VKP+VVTY+++I G+C   + + A +L  +
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 423

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +GV P+ +T++ ++  LC+  ++++A  L + M+Q GV+PD FTY TL+DG C  G 
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 241 VNHAKELFVSMESMG 255
           V  A  L   M   G
Sbjct: 484 VEKALSLHDEMIRKG 498



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E+L +F  M +     P V +F  ++    K  + +  ++L  ++   GL  +  T + 
Sbjct: 275 HESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ FCK G +    + +  + +    P VV + +LI                     K 
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TY+TII G CK G +D A +L  KM  K V P+ +TY+S+IRG C     N+A 
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M+  GVQP+  T+  ++D  CK G +++A SL D MI+ GV PD  TY+ L++G 
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 236 CLTGRVNHAKELFVSM 251
             + R   A  L   +
Sbjct: 514 SKSARTKEAHRLLFKL 529



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 134/247 (54%), Gaps = 34/247 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPDLYTHSILINCFCKMGRVSH 89
           P V ++N +L  L+     D  L   +R  S+    G+ P++YT++IL+   C  GR+  
Sbjct: 116 PSVPAYNAVLLALS-----DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTII 127
              V+G +  +   P+ VT+ +L+                         KP+ +T+N+++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +GLCK G ++ A+++F +M  + + P+VV+Y +++ G+C     +E+  +F EM  +G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+VVTF  ++   CK G +++A +L+  M + G+R +  T+  L+DGFC  G ++ A   
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA--- 347

Query: 248 FVSMESM 254
            +++E M
Sbjct: 348 LLAVEEM 354



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    K    D  L   + +   G+ P +  ++ LIN +CK+GR+     ++  +
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT++++I   CK                    PDAITY+++I GLC++  +
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF  M    V+P+  TYT++I G C   +  +A  L  EM+ +GV P+VVT++V+
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 509

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           ++ L K+ +  EA  LL  +      PD   Y+                LL GFC+ G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 242 NHAKELFVSM 251
             A +++ SM
Sbjct: 570 KEADKVYQSM 579



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 71/282 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++    K    D    L + + +  + PD+ T+S +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             ++L+    PD +T++SLI+ +C                    +PD  TY T+IDG CK
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYT--------------------------------- 159
           +G V+KA  L  +M  K V P+VVTY+                                 
Sbjct: 481 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK 540

Query: 160 -----------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                            ++++GFC      EA +++  M+D+  + +   +++++   C+
Sbjct: 541 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 600

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            G + +A S    M++ G  P++ +  +L+ G    G V  A
Sbjct: 601 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ ML++   P   + +  ++    K  + +  LSL   +   G+ PD+ T+S+
Sbjct: 450 NDACELFENMLQLGVQPDEFT-YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGF 135
           LIN   K  R      +L ++      PD + + +L+  C K +  +   ++ G C +G 
Sbjct: 509 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 568

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A +++  M D+N K +   Y+ +I G C   +  +A     +M+  G  PN  +   
Sbjct: 569 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 628

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++  L + G + EA + +  ++      DA     L+D
Sbjct: 629 LVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALID 666



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+V  +N ++  L  +  +  A   L  M++HGV P+ +TYN L+   C  GR+  A
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 245 KELFVSMESMGC 256
             +   M   GC
Sbjct: 172 VGVVGDMRGAGC 183


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L  L K    + V  L + +   G  PD ++++ ++ C C+ G+      +
Sbjct: 195 PDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKI 254

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L +++               K C PD +TYN+++DG CK   +D+A+ L   M  +   P
Sbjct: 255 LEKMIE--------------KKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAP 300

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V+TYT++I GF  A+   +A R+  +M   G+ P++VT+N ++D LCK GK++EA  LL
Sbjct: 301 TVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELL 360

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++M++    PD  TY+ L++G C  G+V+ A+ L   M   GC
Sbjct: 361 EVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGC 403



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N ++ CL ++  Y+    + +++      PD+ T++ L++ FCK+ ++     +
Sbjct: 230 PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     P V+T+T+LI                         PD +TYN ++DGLCK
Sbjct: 290 LEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A EL   M +K+  P+VVTY+ ++ G C     ++A+ L   M+++G QPN+VT
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVT 409

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           FN ++D  CK GK+DE   +L+LM +    PD  TY+TL+DG+C   R+  A
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDA 461



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 132/238 (55%), Gaps = 15/238 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L K    D    L + +   G  P+L T + +I+ FCK G+V  G  V
Sbjct: 370 PDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKV 429

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------PDAITYNTIIDGLCKQGFVDK 138
           L  +     TPDVVT+++LI   CK              PD  +Y+++++GLC  G V++
Sbjct: 430 LELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEE 489

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+E+   M  +   P    Y  +I G C     +EA ++   M ++G +PN+ T++++++
Sbjct: 490 AQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILIN 549

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK  ++++A ++LD+M++ G  PD  TY +L+DGFC   +++ A + F +M   GC
Sbjct: 550 GLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGC 607



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 25/248 (10%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           PS P  S++  ++   ++  +   VL +   + +    PD+ TH+ ++  +C++G +   
Sbjct: 19  PSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA 78

Query: 91  FVVL-GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
                G++  S   P   T+  LI                     K C PDA  YN +I 
Sbjct: 79  LSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIA 135

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK G +D A+ +   M +++  P+V+TYTS+I G C  N  +EA++L  +M + G+ P
Sbjct: 136 GLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTP 195

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + V +N +++ LCK  +++E S LL+ M++ G  PD F+YNT++   C +G+   A ++ 
Sbjct: 196 DTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKIL 255

Query: 249 VSMESMGC 256
             M    C
Sbjct: 256 EKMIEKKC 263



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N +L    +    D  LS F+        P  +T+ ILI+  C+  R+   + +
Sbjct: 57  PDVITHNTILKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQL 114

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +++    PD   +  LI                     + C PD ITY ++I G C+
Sbjct: 115 LDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQ 174

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A++L  KMK+  + P+ V Y +++ G C  N   E  +L  EM++ G +P+  +
Sbjct: 175 TNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFS 234

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++GK +EA  +L+ MI+    PD  TYN+L+DGFC   +++ A+ L   M 
Sbjct: 235 YNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 253 SMGC 256
              C
Sbjct: 295 GRRC 298



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 27/244 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    L + +      P + T++ LI  F +  R++  + V
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRV 324

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  + ++  +PD+VT+  L+                     K C PD +TY+ +++GLCK
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A+ L   M ++  +PN+VT+ ++I GFC A   +E  ++   M +    P+VVT
Sbjct: 385 LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVT 444

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D  CK  +M +A ++L      G+ PD  +Y+++L+G C TG+V  A+E+   M 
Sbjct: 445 YSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 253 SMGC 256
             GC
Sbjct: 499 KQGC 502



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 125/269 (46%), Gaps = 57/269 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT---VLSLFKRLNSTGLFPDLYT 73
           ++A  + + ML      P + +FN M+    K    D    VL L K ++ T   PD+ T
Sbjct: 389 DDARLLLEMMLE-RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT---PDVVT 444

Query: 74  HSILINCFCKMGRVSHGFVVL-------------------GRILRSCFTPDVVT------ 108
           +S LI+ +CK  R+   F +L                   G++  +    D++T      
Sbjct: 445 YSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPP 504

Query: 109 ---FTSLI----------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
                +LI                      + C+P+  TY+ +I+GLCK   V+ A  + 
Sbjct: 505 TSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVL 564

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             M +K   P+V TYTS+I GFC  N  + A + F  M D G +P+ + +N+++   C++
Sbjct: 565 DVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQS 624

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           G +++A  ++ LM++ G  PDA TY +L+
Sbjct: 625 GNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 15/193 (7%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG  +T    EA  + D M +    PP  S + +++G L   +  D  L + + ++  G 
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTK-QGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGC 537

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+LYT+SILIN  CK  RV     VL  +L               K C PD  TY ++I
Sbjct: 538 EPNLYTYSILINGLCKTKRVEDAINVLDVMLE--------------KGCVPDVATYTSLI 583

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK   +D A + F  M+D   +P+ + Y  +I GFC + +  +A  +   M+++G  
Sbjct: 584 DGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCN 643

Query: 188 PNVVTFNVIMDEL 200
           P+  T+  +M  L
Sbjct: 644 PDAATYFSLMRSL 656


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 65/296 (21%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT------ 54
           ERL+S       T+ P++A  +FD +L    +P P    N +L  LA+            
Sbjct: 44  ERLRSG------TLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPA 97

Query: 55  -VLSLFKRLNSTG---LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110
             + LFKR++        P +YT++ILINC+ +  R   G  V GR+LR+   PDV    
Sbjct: 98  LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDV---- 153

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                      +YN +IDG  K+G VDKA +LF KM+++ + PNVVTY+S+I G C   +
Sbjct: 154 ----------FSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKE 203

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVI---------------------------------- 196
            ++A+R+  +M+  GV+PN +T+N +                                  
Sbjct: 204 MDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNS 263

Query: 197 -MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            M  LCK+G++ EA  + D M+  G +PD  +Y  LL G+   G +     LF  M
Sbjct: 264 FMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVM 319



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 58/298 (19%)

Query: 16  PNEALCIFDYMLRMH--PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  A+ +F  M R     + P + ++NI++ C  + +  D  L +F RL  TGL PD+++
Sbjct: 96  PALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFS 155

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------- 117
           ++ LI+ F K G V     +  ++      P+VVT++SLI  +CK               
Sbjct: 156 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV 215

Query: 118 -----PDAITYNTIIDG-----------------------------------LCKQGFVD 137
                P+ +TYN +I G                                   LCK G + 
Sbjct: 216 GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK 275

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A+++F  M  K  KP+V++Y +++ G+  A        LF  M+ +GV P+   FN ++
Sbjct: 276 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 335

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   + G MD++  + + M + GV PD  T++T++  FC  GR++ A E F  M   G
Sbjct: 336 NAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTG 393



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 57/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++   + +  +   + +FK ++S+ L PD+   +  +   CK GR+     +
Sbjct: 221 PNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDI 280

Query: 94  LGRILRSCFTPDVVTFTSL------------------IKVCK---PDAITYNTIIDGLCK 132
              ++     PDV+++ +L                  + VC+   PD   +NT+I+   +
Sbjct: 281 FDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYAR 340

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DK+  +F  M  + V P+++T+++VI  FC     ++A   F  M+D GV P+   
Sbjct: 341 LGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAV 400

Query: 193 ------------------------------------FNVIMDELCKNGKMDEASSLLDLM 216
                                               F  I++ LCK G++ E   ++DL+
Sbjct: 401 YSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLI 460

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I  G RP+  T+N+L+DG+CL G +  A  L  SMES+G
Sbjct: 461 IHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 499



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHS 75
           ++A+  F++M+     PP  + ++ ++      +       L   + S G+ P  +   +
Sbjct: 380 DDAMEKFNHMIDTG-VPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 438

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
            +IN  CK GRV+ G  V+  I+ +   P+++TF SL+                      
Sbjct: 439 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 498

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +PD  TYNT++DG CK G +D A  LF  M  K V    V+Y  ++ G   A     A
Sbjct: 499 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVA 558

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K +F EM++ G+  ++ T+  ++  LC+N   DEA+ LL+ +    V+ D  T+N ++  
Sbjct: 559 KEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRA 618

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GR   AKELF ++ + G
Sbjct: 619 MFKVGRRQEAKELFAAISTYG 639



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 18/225 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P + +FN ++   CL  N      + L   + S G+ PD+YT++ L++ +CK GR+    
Sbjct: 467 PNLITFNSLVDGYCLVGN--MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDAL 524

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   +L        VT TS         ++YN I+ GL +      AKE+F +M +  +
Sbjct: 525 TLFRDMLHK-----RVTLTS---------VSYNIILHGLFQARRTIVAKEMFHEMIESGM 570

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
             ++ TY +V+ G C  N  +EA  L  ++    V+ +++TFN+++  + K G+  EA  
Sbjct: 571 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKE 630

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L   +  +G+ P   TY  ++           A  LF SME   C
Sbjct: 631 LFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSC 675



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 15/224 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML    +   VS +NI+L  L + +       +F  +  +G+   ++T++ 
Sbjct: 521 DDALTLFRDMLHKRVTLTSVS-YNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 579

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F+ +V          K D +T+N +I  + K G  
Sbjct: 580 VLGGLCRNNCTDEANMLLEKL----FSMNV----------KFDILTFNIVIRAMFKVGRR 625

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + P ++TY  +I        + +A  LF  M      P+    N I
Sbjct: 626 QEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEI 685

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  L   G++ +A + L  + + G+ P+A T + L+  F + G+
Sbjct: 686 IRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 729


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 65/296 (21%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT------ 54
           ERL+S       T+ P++A  +FD +L    +P P    N +L  LA+            
Sbjct: 115 ERLRSG------TLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPA 168

Query: 55  -VLSLFKRLNSTG---LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110
             + LFKR++        P +YT++ILINC+ +  R   G  V GR+LR+   PDV    
Sbjct: 169 LAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDV---- 224

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                      +YN +IDG  K+G VDKA +LF KM+++ + PNVVTY+S+I G C   +
Sbjct: 225 ----------FSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKE 274

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVI---------------------------------- 196
            ++A+R+  +M+  GV+PN +T+N +                                  
Sbjct: 275 MDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNS 334

Query: 197 -MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            M  LCK+G++ EA  + D M+  G +PD  +Y  LL G+   G +     LF  M
Sbjct: 335 FMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVM 390



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 58/298 (19%)

Query: 16  PNEALCIFDYMLRMH--PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  A+ +F  M R     + P + ++NI++ C  + +  D  L +F RL  TGL PD+++
Sbjct: 167 PALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFS 226

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------- 117
           ++ LI+ F K G V     +  ++      P+VVT++SLI  +CK               
Sbjct: 227 YNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV 286

Query: 118 -----PDAITYNTIIDG-----------------------------------LCKQGFVD 137
                P+ +TYN +I G                                   LCK G + 
Sbjct: 287 GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK 346

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A+++F  M  K  KP+V++Y +++ G+  A        LF  M+ +GV P+   FN ++
Sbjct: 347 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 406

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   + G MD++  + + M + GV PD  T++T++  FC  GR++ A E F  M   G
Sbjct: 407 NAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTG 464



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 57/275 (20%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++   + +  +   + +FK ++S+ L PD+   +  +   CK GR+     +   +
Sbjct: 296 TYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSM 355

Query: 98  LRSCFTPDVVTFTSLIK------------------VCK---PDAITYNTIIDGLCKQGFV 136
           +     PDV+++ +L+                   VC+   PD   +NT+I+   + G +
Sbjct: 356 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMM 415

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT---- 192
           DK+  +F  M  + V P+++T+++VI  FC     ++A   F  M+D GV P+       
Sbjct: 416 DKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCL 475

Query: 193 --------------------------------FNVIMDELCKNGKMDEASSLLDLMIQHG 220
                                           F  I++ LCK G++ E   ++DL+I  G
Sbjct: 476 IQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTG 535

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            RP+  T+N+L+DG+CL G +  A  L  SMES+G
Sbjct: 536 QRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 570



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHS 75
           ++A+  F++M+     PP  + ++ ++      +       L   + S G+ P  +   +
Sbjct: 451 DDAMEKFNHMIDTG-VPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 509

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
            +IN  CK GRV+ G  V+  I+ +   P+++TF SL+                      
Sbjct: 510 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 569

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +PD  TYNT++DG CK G +D A  LF  M  K V    V+Y  ++ G   A     A
Sbjct: 570 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVA 629

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K +F EM++ G+  ++ T+  ++  LC+N   DEA+ LL+ +    V+ D  T+N ++  
Sbjct: 630 KEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRA 689

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GR   AKELF ++ + G
Sbjct: 690 MFKVGRRQEAKELFAAISTYG 710



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 18/225 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P + +FN ++   CL  N      + L   + S G+ PD+YT++ L++ +CK GR+    
Sbjct: 538 PNLITFNSLVDGYCLVGN--MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDAL 595

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   +L        VT TS         ++YN I+ GL +      AKE+F +M +  +
Sbjct: 596 TLFRDMLHK-----RVTLTS---------VSYNIILHGLFQARRTIVAKEMFHEMIESGM 641

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
             ++ TY +V+ G C  N  +EA  L  ++    V+ +++TFN+++  + K G+  EA  
Sbjct: 642 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKE 701

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L   +  +G+ P   TY  ++           A  LF SME   C
Sbjct: 702 LFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSC 746



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 15/224 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML    +   VS +NI+L  L + +       +F  +  +G+   ++T++ 
Sbjct: 592 DDALTLFRDMLHKRVTLTSVS-YNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 650

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F+ +V          K D +T+N +I  + K G  
Sbjct: 651 VLGGLCRNNCTDEANMLLEKL----FSMNV----------KFDILTFNIVIRAMFKVGRR 696

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + P ++TY  +I        + +A  LF  M      P+    N I
Sbjct: 697 QEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEI 756

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  L   G++ +A + L  + + G+ P+A T + L+  F + G+
Sbjct: 757 IRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 800


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  L K KH D  L+LFK + + G+ P++ T+S LI+C C  GR S    +
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     PDV TF++LI                     +   P  +TY+++I+G C 
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 168

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+AK++F  M  K+  P+VVTY ++I+GFC      E   +F EM  +G+  N VT
Sbjct: 169 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 228

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N+++  L + G  D A  +   M+  GV P+  TYNTLLDG C  G++  A  +F
Sbjct: 229 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 284



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 14/201 (6%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           ++L  R+ + G  PDL T+ +++N  CK G     F +L ++ +    P V         
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV--------- 51

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                + YNTIIDGLCK   +D A  LF +M+ K ++PNVVTY+S+I   C    W++A 
Sbjct: 52  -----LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 106

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL  +M+++ + P+V TF+ ++D   K GK+ EA  L D M++  + P   TY++L++GF
Sbjct: 107 RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 166

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C+  R++ AK++F  M S  C
Sbjct: 167 CMHDRLDEAKQMFEFMVSKHC 187



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  ++D M++     P + +++ ++     +   D    +F+ + S   FPD+ T++ L
Sbjct: 139 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I  FCK  RV  G  V   + +     + VT+  LI+                       
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYNT++DGLCK G ++KA  +F  ++   ++P + TY  +I G C A    +   
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 317

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+P+VV +N ++   C+ G  +EA +L   M + G  P++  YNTL+    
Sbjct: 318 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 377

Query: 237 LTGRVNHAKELFVSMESMG 255
             G    + EL   M S G
Sbjct: 378 RDGDREASAELIKEMRSCG 396



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ +++  L K    D   +L  ++    L P +  ++ +I+  CK   +     +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+VVT++SLI                     +   PD  T++ +ID   K
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L+ +M  +++ P++VTY+S+I GFC  +  +EAK++F  M+ +   P+VVT
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 193

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   CK  +++E   +   M Q G+  +  TYN L+ G    G  + A+E+F  M 
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253

Query: 253 SMG 255
           S G
Sbjct: 254 SDG 256



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 26/243 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F++M+  H   P V ++N ++    K K  +  + +F+ ++  GL  +  T++I
Sbjct: 173 DEAKQMFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 231

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI    + G       +   ++     P+++T+ +L+  +CK                  
Sbjct: 232 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 291

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TYN +I+G+CK G V+   +LF  +  K VKP+VV Y ++I GFC      EA 
Sbjct: 292 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 351

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTL 231
            LF EM + G  PN   +N ++    ++G  + ++ L+  M   G   DA T     N L
Sbjct: 352 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 411

Query: 232 LDG 234
            DG
Sbjct: 412 HDG 414


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ + +F+  ++     P V SFN+++  + +       L L +R+N  G  PD  TH+I
Sbjct: 235 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 294

Query: 77  LINCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLIK-VCK----------------- 117
           +++  C+   VS G  VL R+ R     P+VVTFTS+I   CK                 
Sbjct: 295 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 354

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K G +  A E++ +M      P+VVT++S+I G+C     ++A
Sbjct: 355 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 414

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R++ +M    +QPNV TF++I+  LCK  + DEA  LL +L ++  + P AF YN ++D
Sbjct: 415 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVID 474

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   ME  GC
Sbjct: 475 VLCKCGKVDEANLIRKGMEEKGC 497



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 16/199 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            A+ ++  M R+   PP V +F+ ++    +    D  L ++  +    + P++YT SI+
Sbjct: 378 SAVEVYQQMTRLR-CPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSII 436

Query: 78  INCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           I+  CK  R      +L  + LR    PD+           P A  YN +ID LCK G V
Sbjct: 437 IHSLCKQNRSDEAICLLNELNLR----PDIA----------PQAFIYNPVIDVLCKCGKV 482

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  +   M++K  +P+  TYT +I G+C  +  +EA   F EM++ G  P+ +T N  
Sbjct: 483 DEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCF 542

Query: 197 MDELCKNGKMDEASSLLDL 215
           +  L K G  +E   ++ L
Sbjct: 543 ISCLLKAGMPNEVDHVMRL 561



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN-STGLFPDLYTHS 75
           ++AL I+  M + H   P V +F+I++  L K    D  + L   LN    + P  + ++
Sbjct: 412 DDALRIWSDMAQ-HRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYN 470

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +I+  CK G+V    ++   +                K C+PD  TY  +I G C +  
Sbjct: 471 PVIDVLCKCGKVDEANLIRKGMEE--------------KGCRPDKYTYTILIIGYCMKSR 516

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           + +A   F +M +    P+ +T    I     A   NE
Sbjct: 517 ISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNE 554



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 18/129 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA+C+ +  L + P   P +  +N ++  L K    D    + K +   G  PD YT++
Sbjct: 447 DEAICLLNE-LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 505

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQG 134
           ILI  +C   R+S                 ++ F  +++  C PD+IT N  I  L K G
Sbjct: 506 ILIIGYCMKSRISEA---------------IMFFHEMVEAGCSPDSITVNCFISCLLKAG 550

Query: 135 FVDKAKELF 143
             ++   + 
Sbjct: 551 MPNEVDHVM 559


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ + +F+  ++     P V SFN+++  + +       L L +R+N  G  PD  TH+I
Sbjct: 230 HDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 289

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           +++  C+   VS G  VL R+ R     P+VVTFTS+I   CK                 
Sbjct: 290 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 349

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K G +  A E++ +M      P+VVT++S+I G+C     ++A
Sbjct: 350 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 409

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R++ +M    +QPNV TF++I+  LCK  + DEA  LL +L ++  + P AF YN ++D
Sbjct: 410 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVID 469

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   ME  GC
Sbjct: 470 VLCKCGKVDEANLIRKGMEEKGC 492



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 16/199 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            A+ ++  M R+   PP V +F+ ++    +    D  L ++  +    + P++YT SI+
Sbjct: 373 SAVEVYQQMTRLR-CPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSII 431

Query: 78  INCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           I+  CK  R      +L  + LR    PD+           P A  YN +ID LCK G V
Sbjct: 432 IHSLCKQNRSDEAIRLLNELNLR----PDIA----------PQAFIYNPVIDVLCKCGKV 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  +   M++K  +P+  TYT +I G+C  +  +EA   F EM++ G  P+ +T N  
Sbjct: 478 DEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCF 537

Query: 197 MDELCKNGKMDEASSLLDL 215
           +  L K G  +E   ++ L
Sbjct: 538 ISCLLKAGMPNEVDHVMRL 556


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 143/301 (47%), Gaps = 62/301 (20%)

Query: 17  NEALCIFDYML--RMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
             A+ +F  ML  R H       P V ++++++  L K       + L + + + G  PD
Sbjct: 166 ERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------- 113
           + T++IL++  CK  +V+  + VL  +L +   P++VT+ SL+                 
Sbjct: 226 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 285

Query: 114 ----KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN------------------- 150
               + C P+ +TY T+IDGLCK G V  A  +   M DK                    
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 345

Query: 151 ----------------VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
                           +KP+VVTY+SVI G C +N  +EA RL + +  +G  P+V+ ++
Sbjct: 346 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 405

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D LCK GK+DEA  L ++M   G   D  TY+TL+DG C  GRV+ A  L   M  M
Sbjct: 406 TLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 465

Query: 255 G 255
           G
Sbjct: 466 G 466



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L + +     L+L + +   G  P++ T+  LI+  CK+GRV     +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  ++    TPD++ +  LI  +CK                    PD +TY+++I GLC+
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A  L L +K +   P+V+ Y+++I G C A   +EA  L+  M   G   +VVT
Sbjct: 379 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVT 438

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK G++DEA  LL  M++ G  P   TYN+L+ G C    ++ A EL   ME
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 498

Query: 253 SMGC 256
              C
Sbjct: 499 RSNC 502



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 31/268 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I   M R H   P V ++N ++  L KN   D    LF+ + S    P + T++ 
Sbjct: 96  DQALAILHEM-RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNT 154

Query: 77  LINCFCKMGRVSHGFVVLGRIL--RS------CFTPDVVTFTSLI--------------- 113
           L++   + G++     +   +L  RS      C +P+V+T++ LI               
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRC-SPNVITYSVLIDGLCKANRVSQAVEL 213

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 + C PD ITY  ++DGLCK+  V  A E+  +M D    PN+VTY S++ G C 
Sbjct: 214 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   ++A  L  +M  +G  PNVVT+  ++D LCK G++ +A ++L  MI  G  PD   
Sbjct: 274 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 333

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN L++G C   +V+ +  L     S G
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGG 361



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K        ++   +   G  PDL  +++LIN  CK  +V     +
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 353

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R +     PDVVT++S+I                     + C PD I Y+T+IDGLCK
Sbjct: 354 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A +L+  M       +VVTY+++I G C A   +EA  L   M+  G  P+ +T
Sbjct: 414 AGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMT 473

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N ++  LC    +DEA  L++ M +    P A TYN L+ G C   RV+ A  L 
Sbjct: 474 YNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLL 529



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 26/244 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N+++  L K    D  ++L +R  S G+ PD+ T+S +I   C+  R+     +
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 94  LGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNTIIDGLCK 132
           L  +      PDV+ +++LI       KV              C  D +TY+T+IDGLCK
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A  L  +M      P+ +TY S+I+G C  N  +EA  L  EM      P+ VT
Sbjct: 449 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVT 508

Query: 193 FNVIMDELCKNGKMDEASSLLD-----LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +N+++  +C+  ++D A  LL+      +   G   D   Y++L+DG C  GRV  A + 
Sbjct: 509 YNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDY 568

Query: 248 FVSM 251
           F  M
Sbjct: 569 FQEM 572



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 21/230 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +L    +    D     F  + S  L P+++  SILI+  CK  R       
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL-- 64

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R  R+     +V           D + Y  ++ GL K+  +D+A  +  +M+D   +P
Sbjct: 65  --RCFRAMQGSGIVA----------DTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEP 112

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY S+I G C  N+ + A+ LF  M      P++VT+N ++D L + GK++ A +L 
Sbjct: 113 NVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALF 172

Query: 214 DLMIQH-------GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M+            P+  TY+ L+DG C   RV+ A EL  SM++ GC
Sbjct: 173 QEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGC 222



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%)

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           ++ +C+PD  TY  ++ G C+ G +D+A+  F +M+ KN+ PNV   + +I G C A   
Sbjct: 1   MLPICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRS 60

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A R F  M   G+  + V +  ++  L K  ++D+A ++L  M  HG  P+  TYN+L
Sbjct: 61  IDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSL 120

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DG C     + A+ELF  M+S+ C
Sbjct: 121 IDGLCKNNEPDRAQELFEHMKSVEC 145



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 27/217 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V  ++ ++  L K    D    L++ +   G   D+ T+S LI+  CK GRV    +
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L R++R    P  +T+ SLIK                      C P A+TYN +I G+C
Sbjct: 458 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517

Query: 132 KQGFVDKAKELFLKMKDKNVKP-----NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +   VD A  L  + K + V       + + Y+S+I G C A    EA   F EM+D GV
Sbjct: 518 RMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGV 577

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSL-LDLMIQHGVR 222
            P+ +T++++++ L K+  + E   L LD M+Q G R
Sbjct: 578 IPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+RM  +PP   ++N ++  L    H D  + L + +  +   P   T++I
Sbjct: 453 DEAHLLLARMVRMG-TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 511

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+M RV    V+L +    C                 D I Y+++IDGLCK G V
Sbjct: 512 LIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL---------DTIAYSSLIDGLCKAGRV 562

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +A + F +M D  V P+ +TY+ ++ G   + D +E + L ++ M Q
Sbjct: 563 AEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 610


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M+R     P V S+N +L    K       L++F  +   GL PD+ T + LI+  
Sbjct: 245 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           CK G +     ++ ++       + VTFT+LI   CK                    P  
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN +I+G CK G +D A+EL  +M+ K VKP+VVTY+++I G+C   + + A +L  +
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 423

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +GV P+ +T++ ++  LC+  ++++A  L + M+Q GV+PD FTY TL+DG C  G 
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 241 VNHAKELFVSMESMG 255
           V  A  L   M   G
Sbjct: 484 VEKALSLHDEMIRKG 498



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E+L +F  M +     P V +F  ++    K  + +  ++L  ++   GL  +  T + 
Sbjct: 275 HESLAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ FCK G +    + +  + +    P VV + +LI                     K 
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TY+TII G CK G +D A +L  KM  K V P+ +TY+S+IRG C     N+A 
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M+  GVQP+  T+  ++D  CK G +++A SL D MI+ GV PD  TY+ L++G 
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 236 CLTGRVNHAKELFVSM 251
             + R   A  L   +
Sbjct: 514 SKSARTKEAHRLLFKL 529



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 134/247 (54%), Gaps = 34/247 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPDLYTHSILINCFCKMGRVSH 89
           P V ++N +L  L+     D  L   +R  S+    G+ P++YT++IL+   C  GR+  
Sbjct: 116 PSVPAYNAVLLALS-----DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTII 127
              V+G +  +   P+ VT+ +L+                         KP+ +T+N+++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +GLCK G ++ A+++F +M  + + P+VV+Y +++ G+C     +E+  +F EM  +G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+VVTF  ++   CK G +++A +L+  M + G+R +  T+  L+DGFC  G ++ A   
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA--- 347

Query: 248 FVSMESM 254
            +++E M
Sbjct: 348 LLAVEEM 354



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    K    D  L   + +   G+ P +  ++ LIN +CK+GR+     ++  +
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT++++I   CK                    PDAITY+++I GLC++  +
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF  M    V+P+  TYT++I G C   +  +A  L  EM+ +GV P+VVT++V+
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 509

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           ++ L K+ +  EA  LL  +      PD   Y+                LL GFC+ G +
Sbjct: 510 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 569

Query: 242 NHAKELFVSM 251
             A +++ SM
Sbjct: 570 KEADKVYQSM 579



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 23/212 (10%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           G  P +  ++ ++        +      L  +LR    P+V T+  L++           
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIR 163
                      C P+A+TYNT++   C+ G +D A+ +   M+++ N KPN+VT+ S++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           G C A     A+++F EM+ +G+ P+VV++N ++   CK G + E+ ++   M Q G+ P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  T+ +L+   C  G +  A  L   M   G
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERG 323



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 71/282 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++    K    D    L + + +  + PD+ T+S +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             ++L+    PD +T++SLI+ +C                    +PD  TY T+IDG CK
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYT--------------------------------- 159
           +G V+KA  L  +M  K V P+VVTY+                                 
Sbjct: 481 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK 540

Query: 160 -----------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                            ++++GFC      EA +++  M+D+  + +   +++++   C+
Sbjct: 541 YDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCR 600

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            G + +A S    M++ G  P++ +  +L+ G    G V  A
Sbjct: 601 GGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ ML++   P   + +  ++    K  + +  LSL   +   G+ PD+ T+S+
Sbjct: 450 NDACELFENMLQLGVQPDEFT-YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGF 135
           LIN   K  R      +L ++      PD + + +L+  C K +  +   ++ G C +G 
Sbjct: 509 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 568

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A +++  M D+N K +   Y+ +I G C   +  +A     +M+  G  PN  +   
Sbjct: 569 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTIS 628

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++  L + G + EA + +  ++      DA     L+D
Sbjct: 629 LVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALID 666



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+V  +N ++  L  +  +  A   L  M++HGV P+ +TYN L+   C  GR+  A
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 245 KELFVSMESMGC 256
             +   M   GC
Sbjct: 172 VGVVGDMRGAGC 183


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 138/266 (51%), Gaps = 27/266 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M+    SP  + ++ +++  L+K    +    +F  +   G  PD + ++ 
Sbjct: 94  DEAMAVLEQMVEKGNSPT-LKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTA 152

Query: 77  LINCFCKMGRVSHGFVVL----GRILRSCFTPDVVTFTSLIK-VCK-------------- 117
           LI   CK G+    + +      R   +   PDVVT+TSLI  +CK              
Sbjct: 153 LIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDE 212

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PDA+TY +IIDGLCK G V++  E F +M+++  +P+ VTY ++I GF  A  
Sbjct: 213 AVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 272

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             +A R++ +M+  G   + VT+N+I+D LCK G++ EA +    M + G      TY+ 
Sbjct: 273 IPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSA 332

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           L+DGFC  G V+ A ELF  M   GC
Sbjct: 333 LMDGFCSEGNVSAAVELFRRMLDRGC 358



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 26/266 (9%)

Query: 16  PNEALCIF-DYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFK-RLNSTGLFPDL 71
           P EA  ++ +   R H +   P V ++  ++  L K         +F       G  PD 
Sbjct: 163 PEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDA 222

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCKP 118
            T++ +I+  CK+GRV  G      +    + PD VT+ +LI             +V + 
Sbjct: 223 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQ 282

Query: 119 --------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                     +TYN I+DGLCK G V +A   FL M+++     VVTY++++ GFC   +
Sbjct: 283 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 342

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            + A  LF  M+D+G +PN+V++N+I+  LC+ GK+ +A    + ++Q  + PD +T+N 
Sbjct: 343 VSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNA 402

Query: 231 LLDGFCLT-GRVNHAKELFVSMESMG 255
            L G C     V+   ELF SM S G
Sbjct: 403 FLHGLCQRLDTVSDGVELFESMVSQG 428



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 26/251 (10%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P + +F +++  L + K  D   S+ +R    G  PD  T+++ I+  CK  RV   
Sbjct: 2   PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDA 61

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
           F +L ++      P  VT+T+L+                     K   P   TY  +IDG
Sbjct: 62  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---- 185
           L K G V++A+ +F+ M     +P+   YT++I+G C +    EA  L+ E   +     
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             P+VVT+  ++D LCK G++ EA  +  D  ++ G  PDA TY +++DG C  GRV   
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 245 KELFVSMESMG 255
            E F  M + G
Sbjct: 242 CERFHEMRNRG 252



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 15/216 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NI+L  L K        + F  +   G    + T+S L++ FC  G VS    +  R+
Sbjct: 294 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 353

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L               + C+P+ ++YN II GLC+ G + KA   F K+  + + P+V T
Sbjct: 354 LD--------------RGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 399

Query: 158 YTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           + + + G C   D  ++   LF  M+ QG  PN+ +++++MD +C+ G ++ A  +   M
Sbjct: 400 FNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREM 459

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV PD   +NTL+   C+ GRV+ A E+F  +E
Sbjct: 460 VSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE 495



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +++ ++       +    + LF+R+   G  P+L +++I+I   C+ G+++  +    
Sbjct: 327 VVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFE 386

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPN 154
           ++L+    PDV TF              N  + GLC++   V    ELF  M  +   PN
Sbjct: 387 KLLQRRLCPDVYTF--------------NAFLHGLCQRLDTVSDGVELFESMVSQGTSPN 432

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           + +Y+ ++ G C A     A  +F EM+ +GV P+VV FN ++  LC  G++DEA  +  
Sbjct: 433 LHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFR 492

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + +    PDA++Y +LLDG     R+  A+ L   M+  GC
Sbjct: 493 ELERRSA-PDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGC 533



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 79/141 (56%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD + +  +I+GLC++  +D+A  +  +      +P+ VTY   I G C A   ++A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  +M ++   P  VT+  ++D L K G++DEA ++L+ M++ G  P   TY  ++DG 
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              GRV  A+ +FV M   GC
Sbjct: 123 SKAGRVEEARRIFVDMLGNGC 143



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T ++ + +F+ M+    SP  + S++I++  + +    +  L +F+ + S G+ PD+   
Sbjct: 413 TVSDGVELFESMVSQGTSPN-LHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVF 471

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + LI   C  GRV     V               F  L +   PDA +Y +++DGL +  
Sbjct: 472 NTLIRWLCIAGRVDEALEV---------------FRELERRSAPDAWSYWSLLDGLSRCE 516

Query: 135 FVDKAKELFLKMKDKNVKPN 154
            +++A+ L   MK +   P 
Sbjct: 517 RMEEARLLSFHMKLQGCAPR 536


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++   AKN+  D  ++ F  +   G  P++ T++ +I+  CK GRV        +++
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 99  RSCFTPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGFVD 137
               +PD++TFTSLI          KV K           P+AI  NTI+D LCK+G V 
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A + F ++    VKP+VV+YT +I G+C     +E+ +L   M+  G++P+ VT++ ++
Sbjct: 418 EAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL 477

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  CKNG++D+A +L   M    V+P+A TYN +L G    GRV  A+E ++ +   G
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSG 535



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 73/311 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD----------------TVLSLFK 60
           ++A  +F  ML     PP + ++N ++  L K +  D                  + L K
Sbjct: 156 DKAYTLFHEMLG-QGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLK 214

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVS-------------------------HGFVVLG 95
           +++  GL PD+ T+S+LI+ +CK+GR +                         HG+   G
Sbjct: 215 KMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKG 274

Query: 96  RI-----LRSCFTPDVV-----TFTSLIKVC---------------------KPDAITYN 124
            +     L +    D +      F  LI+                        P+ +TY 
Sbjct: 275 ALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYT 334

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+ID LCK G V+ A   F +M  + + P+++T+TS+I G C   +W + ++L  EM+++
Sbjct: 335 TVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINR 394

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PN +  N IMD LCK G++ EA    D +I  GV+PD  +Y  L+DG+CL G+++ +
Sbjct: 395 GIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDES 454

Query: 245 KELFVSMESMG 255
            +L   M S+G
Sbjct: 455 IKLLGRMVSIG 465



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ++ +    P V S+ I++     +   D  + L  R+ S GL PD  T+S L
Sbjct: 418 EAHDFFDQIIHV-GVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSAL 476

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N +CK GRV         + R  F+ DV          KP+AITYN I+ GL   G V 
Sbjct: 477 LNGYCKNGRVDDALA----LYREMFSKDV----------KPNAITYNIILHGLFHAGRVV 522

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+E ++K+ D  ++  + TY  V+ G C  +  +EA R+F  +  +  Q  V TFN+++
Sbjct: 523 AAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L K G++ +A SL   ++  G+ PDA  Y  ++      G +  + ELF+SME  GC
Sbjct: 583 VGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGC 641



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 31/261 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNSTG--- 66
            +AL +FD +L    S   V +FN +L  +A      +        +SLF  +   G   
Sbjct: 31  EDALNLFDELLPRARSAS-VHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVGVNK 89

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI 126
           L  D  T  ILI CFC +G +        R  R+     V         C P+ ++YN +
Sbjct: 90  LATDACTFGILIRCFCNVGLLDFALEEESRGSRAA----VHMMADDGYNCPPNVLSYNMV 145

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-- 184
           I+GL K+G VDKA  LF +M  +   PN+VTY SVI G C A   ++A+ +  +M D+  
Sbjct: 146 INGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQ 205

Query: 185 --------------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
                         G+QP+VVT+++++D  CK G+  EA ++ D M++ G  PDA+TY T
Sbjct: 206 LEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRT 265

Query: 231 LLDGFCLTGRVNHAKELFVSM 251
           LL G+   G +    +L   M
Sbjct: 266 LLHGYATKGALVDMHDLLALM 286



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P     N ++  L K          F ++   G+ PD+ +++ILI+ +C  G++     +
Sbjct: 398 PNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKL 457

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           LGR++                  +PD +TY+ +++G CK G VD A  L+ +M  K+VKP
Sbjct: 458 LGRMVSIGL--------------RPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKP 503

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY  ++ G  +A     A+  +++++D G+Q  + T+N+++  LC+N  +DEA  + 
Sbjct: 504 NAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMF 563

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             +     + +  T+N ++ G    GR+  AK LF ++
Sbjct: 564 QGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAI 601



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 37/260 (14%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+N+++  L K    D   +LF  +   G  P++ T++ +I+  CK   +     
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195

Query: 93  VLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           VL ++       + V     +     +PD +TY+ +ID  CK G   +A+ +F  M  + 
Sbjct: 196 VLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRG 255

Query: 151 VKPNVVTYTSVIRGF---------------------------------CYAND--WNEAK 175
             P+  TY +++ G+                                  YA +   ++A 
Sbjct: 256 QNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAM 315

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             FIEM  +G  PNVVT+  ++D LCK G++++A S    M+  G+ PD  T+ +L+ G 
Sbjct: 316 TAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGL 375

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G     ++L   M + G
Sbjct: 376 CTIGEWKKVEKLSFEMINRG 395


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 138/251 (54%), Gaps = 31/251 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLN---STGLF--PDLYTHSILINCFCKMGRVS 88
           P V +F I++  L K +  D  L +F+++N   S G    PD+ T++ LI+  CK+GR  
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 89  HGFVVLGRILRS---CFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
            G  ++ R +RS   C  P+ VT+  LI   CK                    P+ +T N
Sbjct: 398 EGLGLVER-MRSQPRCM-PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T++DG+CK G ++ A E F +M+ K +K N VTYT++IR FC  N+  +A  LF EM++ 
Sbjct: 456 TLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+ + +  ++  L + GK+D AS +L  M + G  PD  ++N L++GFC   +++ A
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 245 KELFVSMESMG 255
            E+   ME+ G
Sbjct: 576 YEMLKEMENAG 586



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 28  RMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           RM   P   P   ++N ++    K    +    LF ++N  G+ P++ T + L++  CK 
Sbjct: 405 RMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKH 464

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITY 123
           GR++        +       + VT+T+LI+                      C PDAI Y
Sbjct: 465 GRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVY 524

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
            T+I GL + G +D+A  +  KMK+    P++V++  +I GFC  N  +EA  +  EM +
Sbjct: 525 YTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            G++P+ VT+N ++    K G    A  L+  M++ G+ P   TY  L+  +CL G ++ 
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDE 644

Query: 244 AKELFVSMES 253
           A ++F  M S
Sbjct: 645 AMKIFRDMSS 654



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 10/222 (4%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            +S N +L  L + + +  + +L   +    + P++ T  ILIN  CK  RV     V  
Sbjct: 305 AASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFE 364

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPN 154
           ++        +V         +PD ITYNT+IDGLCK G  ++   L  +M+ +    PN
Sbjct: 365 KMNGGESNGFLV---------EPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPN 415

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
            VTY  +I G+C A+    A+ LF +M   GV PNVVT N ++D +CK+G+++ A    +
Sbjct: 416 TVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFN 475

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G++ +A TY  L+  FC    +  A ELF  M   GC
Sbjct: 476 EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGC 517



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD ML    SP  +  + ++ G L++    D    +  ++   G  PD+ + ++L
Sbjct: 504 KAMELFDEMLEAGCSPDAIVYYTLISG-LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FC+  ++   + +L  +  +                KPD +TYNT+I    K G   
Sbjct: 563 INGFCRKNKLDEAYEMLKEMENAGI--------------KPDGVTYNTLISHFSKTGDFS 608

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVI 196
            A  L  KM  + + P VVTY ++I  +C   + +EA ++F +M     V PN V +N++
Sbjct: 609 TAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNIL 668

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LC+  ++D A SL+D M   GV+P+  T+N +  G      ++ A EL   M    C
Sbjct: 669 INSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHAC 728



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + SFN+++    +    D    + K + + G+ PD  T++ LI+ F K G  S    +
Sbjct: 554 PDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRL 613

Query: 94  LGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGLC 131
           + ++++    P VVT+ +LI                          P+ + YN +I+ LC
Sbjct: 614 MKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLC 673

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++  VD A  L   MK K VKPN  T+ ++ +G    N  ++A  L   M +    P+ +
Sbjct: 674 RKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYI 733

Query: 192 TFNVIMDELCKNGKMDEASSLLD 214
           T  ++ + L   G+  +  S + 
Sbjct: 734 TMEILTEWLSAVGETAKLKSFVQ 756



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 20/230 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           + H  P  V++  +++ C  + +  D    ++  L  +      +  +ILI+   + GRV
Sbjct: 151 KSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLT--HIRNILIDVLFRKGRV 208

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE------ 141
                +L  +L+    P             P++ T + +   L K+  V +A +      
Sbjct: 209 DDALHLLDEMLQ----PKAE--------FPPNSNTGHIVFSALSKRDKVGRAVDEEEIVG 256

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  K  +  V PN +  T +I   C +   + A  +   +M  G      + N ++  L 
Sbjct: 257 LVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALG 316

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  +    ++LL  M +  ++P+  T+  L++  C   RV+ A E+F  M
Sbjct: 317 RAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 34/252 (13%)

Query: 18  EALCIFDYMLRMHP-SPPPVSSFNIML----GCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +AL  F+++    P    P+ SF +           N H + +L LFK   S  +   + 
Sbjct: 102 KALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSH-NKLLDLFKTSKSHKIPLSVN 160

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY--NTIIDGL 130
             ++LI CF +   V   F+V                    ++C    +T+  N +ID L
Sbjct: 161 AATLLIRCFGRAQMVDESFLVYN------------------ELCPSRRLTHIRNILIDVL 202

Query: 131 CKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFC------YANDWNEAKRLFIEMM 182
            ++G VD A  L  +M     +  PN  T   V            A D  E   L  +  
Sbjct: 203 FRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFA 262

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           +  V PN +    ++  LC++G+ D A  +L  +++ G   +A + N LL          
Sbjct: 263 EHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFK 322

Query: 243 HAKELFVSMESM 254
               L   M+ M
Sbjct: 323 RMNTLLAEMKEM 334



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 42/98 (42%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ IF  M      PP    +NI++  L +    D  LSL   +   G+ P+  T + 
Sbjct: 643 DEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNA 702

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
           +     +   +S  F ++ R+      PD +T   L +
Sbjct: 703 MFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTE 740


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD M +     P ++++  +L   A       +  L   +   G+ PD Y  SIL
Sbjct: 319 EARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +   G+V    +V  ++ +    P+              A+TY  +I  LCK G V+
Sbjct: 378 ICAYANQGKVDQAMLVFSKMRQQGLNPN--------------AVTYGAVIGILCKSGRVE 423

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D+ + P  + Y S+I G C  N W  A+ L +EM+D+G+  N + FN I+
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++ E+  L +LM++ GV+P+  TYNTL++G+CL G+++ A +L   M S+G
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 26/257 (10%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP       F+I++   A     D  + +F ++   GL P+  T+  +I 
Sbjct: 358 LLDLMVRNGIHPDH---YVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKP------------------ 118
             CK GRV    +   +++    +P  + + SLI     C                    
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + I +N+IID  CK+G V ++++LF  M    VKPNV+TY ++I G+C A   +EA +L 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M+  G++PN VT++ +++  CK  +M++A  L   M   GV PD  TYN +L G   T
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 239 GRVNHAKELFVSMESMG 255
            R   AKEL+V +   G
Sbjct: 595 RRTAAAKELYVRITESG 611



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 65/301 (21%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +A  +FD +LR       +   N  L  +A++     V S + R+   G   + PDL T+
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCF-------------------------------- 102
            ILI C C+ GR+  GF  LG +++  F                                
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 103 ----TPDVVTFTSLIK-VCK-----------------------PDAITYNTIIDGLCKQG 134
                P+V ++  L+K +C                        PD ++Y T+I+G  K+G
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             DKA   + +M D+ + P+VVTY S+I   C A   ++A  +   M+  GV P+ +T+N
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+   C +G+  EA   L  M   GV PD  TY+ L+D  C  GR   A+++F SM   
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 255 G 255
           G
Sbjct: 331 G 331



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   PD +TYN+II  LCK   +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+P+VVT++++
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           MD LCKNG+  EA  + D M + G++P+  TY TLL G+   G
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V S+NI+L  L         L L   +      G  PD+ +++ +IN F K G     
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG 129
           +     +L     PDVVT+ S+I  +CK                    PD +TYN+I+ G
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            C  G   +A     KM+   V+P+VVTY+ ++   C      EA+++F  M  +G++P 
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+  ++      G + E   LLDLM+++G+ PD + ++ L+  +   G+V+ A  +F 
Sbjct: 336 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFS 395

Query: 250 SMESMG 255
            M   G
Sbjct: 396 KMRQQG 401



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E+  +F+ M+R+   P  ++   ++ G CLA     D  + L   + S GL P+  T+S 
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +CK+ R+    V+   +  S  +PD+              ITYN I+ GL +    
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDI--------------ITYNIILQGLFQTRRT 597

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AKEL++++ +   +  + TY  ++ G C     ++A ++F  +    ++    TFN++
Sbjct: 598 AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIM 657

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D L K G+ DEA  L      +G+ P+ +TY  + +     G +    +LF+SME  GC
Sbjct: 658 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 717



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 121/256 (47%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M R     P   ++  ++G L K+   +  +  F+++   GL P    ++ 
Sbjct: 388 DQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  C   +      ++  +L      + + F S+I                       
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ ITYNT+I+G C  G +D+A +L   M    +KPN VTY+++I G+C  +   +A 
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM   GV P+++T+N+I+  L +  +   A  L   + + G + +  TYN +L G 
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 236 CLTGRVNHAKELFVSM 251
           C     + A ++F ++
Sbjct: 627 CKNKLTDDALQMFQNL 642



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M+ +   P  V+ ++ ++    K    +  L LFK + S+G+ PD+ T++I
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 586

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           ++    +  R +    +  RI  S    ++ T+  ++  +CK                  
Sbjct: 587 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +A T+N +ID L K G  D+AK+LF+      + PN  TY  +           E  
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 706

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +LF+ M D G   +    N I+ EL + G++  A + L ++ +     +A T +  +D
Sbjct: 707 QLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  F+ ML M  +PP +  FN +LG   K K+Y   +SL K++   G+ P+L T +I
Sbjct: 36  DDAVSQFNRMLLMRHTPP-IIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNI 94

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------- 121
           LINCFC +G ++  F VLG+IL+  + P+ +T T+LIK +C  D +              
Sbjct: 95  LINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQG 154

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 +  T+++GLCK G +  A +L   ++D++   NVV Y ++I G C     NEA 
Sbjct: 155 FQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAY 214

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ EM  +G  PNV+T++ ++   C  G++ EA  LL  MI   + PD +TYN L+D  
Sbjct: 215 DLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILKNIDPDVYTYNILMDAL 274

Query: 236 CLTGR 240
           C  G+
Sbjct: 275 CKEGK 279



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 21/217 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  L K+K  +    L+  ++  G FP++ T+  LI  FC  G++   F +L 
Sbjct: 194 VVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLK 253

Query: 96  RILRSCFTPDVVTFTSLI-KVCK-------------------PDAITYNTIIDGLCKQGF 135
            ++     PDV T+  L+  +CK                    D +TY +++DG CK  +
Sbjct: 254 EMILKNIDPDVYTYNILMDALCKEGKSYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXY 313

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +DKA  LF KMK++ ++PNV T+ S + G         A+  F  ++ +G   +V T+ V
Sbjct: 314 LDKAIALFKKMKERRIQPNVYTH-SXLTGCVKGGRLKNAQEFFQHLLVKGYCIDVWTYTV 372

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           ++  LCK G +DEA ++   M  +G  P+A T+  ++
Sbjct: 373 MISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFEIII 409



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 93  VLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           +LG  ++  + P  ++ +  ++V   +P+ +T N +I+  C  G +  +  +  K+    
Sbjct: 60  ILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLGHMAFSFSVLGKILKLG 119

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            +PN +T T++I+G C  ++  ++     +++ QG Q N V+   +++ LCK G+M  A 
Sbjct: 120 YQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGTLLNGLCKIGEMRGAM 179

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL ++       +   YNT++DG C    VN A +L+  M+  G
Sbjct: 180 KLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAYDLYSEMDVRG 224



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I +N I+    K  +   A  L  +M+ K ++PN+VT   +I  FC+      +  +
Sbjct: 52  PPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLGHMAFSFSV 111

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +++  G QPN +T   ++  LC   ++ ++    D ++  G + +  +  TLL+G C 
Sbjct: 112 LGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGTLLNGLCK 171

Query: 238 TGRVNHAKELFVSME 252
            G +  A +L   +E
Sbjct: 172 IGEMRGAMKLLRVIE 186


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FN ++  L+     +  L L + L   GL PD+YT +ILIN  CK+G    G  +
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 429

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+  LI                       C    +TYNTIID LCK
Sbjct: 430 FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCK 489

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  + VT+ ++I G C A   ++A  L  +M+ +G+QPN +T
Sbjct: 490 KMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNIT 549

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A +L   M 
Sbjct: 550 YNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 609

Query: 253 SMG 255
             G
Sbjct: 610 IKG 612



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 21/248 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P  ++F  ++    +    +  L +  ++   G  P   T ++LIN +CKMGRV  
Sbjct: 226 HGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVED 285

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIID 128
               + + +   F PD VT+ + +  +C+                    PD  TYNT+I+
Sbjct: 286 ALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 345

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K G +D+AK +  +M D+   P+  T+ ++I      N   EA  L  E+  +G+ P
Sbjct: 346 CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSP 405

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V TFN++++ LCK G       L + M   G  PD  TYN L+D  C  G++ +A +L 
Sbjct: 406 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLL 465

Query: 249 VSMESMGC 256
             MES GC
Sbjct: 466 NEMESNGC 473



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G I   +   AL +   M+    SP  V+  N+++    K    +  L   ++  + G 
Sbjct: 240 QGFIEEGSIEAALRVKAKMMEAGCSPTGVT-VNVLINGYCKMGRVEDALGYIQQEIADGF 298

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD  T++  ++  C+ G VSH   V+  +L+    PDV T+ ++I              
Sbjct: 299 EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 358

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  + C PD  T+NT+I  L  Q  +++A +L  ++  K + P+V T+  +I   C
Sbjct: 359 IVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D +   RLF EM   G  P+ VT+N+++D LC  GK+  A  LL+ M  +G      
Sbjct: 419 KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNT++D  C   R+  A+E+F  M++ G
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQG 507



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       + LF+ + S+G  PD  T++ILI+  C MG++ +   +
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      VT+ ++I  +CK                      A+T+NT+IDGLCK
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCK 524

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++PN +TY S++  +C   +  +A  +   M   G + +VVT
Sbjct: 525 AKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVT 584

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  LL  M   G+RP    YN ++        +  A  LF  M 
Sbjct: 585 YGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMT 644

Query: 253 SMG 255
            +G
Sbjct: 645 EVG 647



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN +L  L +      + S++  +   G+ PD+ T + LI   C+  +V    ++L  + 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C P  +T N +I+G CK G V+
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ VTY + + G C     + A ++   M+ +G  P+V T+N ++
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI 344

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + L KNG++DEA  +++ M+  G  PD  T+NTL+       R+  A +L
Sbjct: 345 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 24/253 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL + +  L      P  + +  ++  L     +D +  L + +   G         
Sbjct: 69  PEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVR 128

Query: 76  ILINCFCKMGRVSHGF-VVLGRILRSCF--TPDVVTFTSLIKV----------------- 115
             +  + ++ R      +VL ++    F    D V F  L+ V                 
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                +PD +T NT+I  LC+   V  A  +  +M    V P+  T+T++++GF      
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
             A R+  +MM+ G  P  VT NV+++  CK G++++A   +   I  G  PD  TYNT 
Sbjct: 249 EAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTF 308

Query: 232 LDGFCLTGRVNHA 244
           + G C  G V+HA
Sbjct: 309 VHGLCQNGHVSHA 321



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKR 176
           A+   + ++   +    D A +L L   D +   V+ + V +  ++      +     + 
Sbjct: 124 AVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLES 183

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++ EM  +G+QP+VVT N ++  LC+  ++  A  +L+ M  HGV PD  T+ TL+ GF 
Sbjct: 184 VYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFI 243

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A  +   M   GC
Sbjct: 244 EEGSIEAALRVKAKMMEAGC 263


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++    K+K  D  L +F++L + G  PD+ T+S LI+  CK GR+     +
Sbjct: 87  PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDL 146

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            GR+++S               C P+ +TYN++I G C+ G +D+A  L  +M +    P
Sbjct: 147 FGRMIKS-------------GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 193

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYT+++ GFC     ++A  L  +M  +G+ PNVVTF  +MD LC+  ++ +A  +L
Sbjct: 194 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M +    P  +TYNT+LDG+C   ++  A++    +E M C
Sbjct: 254 GEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDC 294



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M++     P   ++N ++    +    D  ++L +R+  TG  PD+ T++ L
Sbjct: 142 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 201

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N FCK+ R+   + +L ++ R   TP+VVTFTSL              +DGLC++  + 
Sbjct: 202 MNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSL--------------MDGLCRENRLS 247

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  +  +M+ K+  P V TY +++ G+C  N   EA++  +E MD    PNVV+FN+++
Sbjct: 248 DAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMI 305

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM-ESMGC 256
             LCK  +  EA  L++   +    PD   Y T++D  C   +V+ A  ++  M E  GC
Sbjct: 306 RGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGC 365



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 15/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P   T++ LI+  CK  R S  + +L  ++ S               C PD  TY T+I 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYS--------------GCIPDIFTYTTLIT 97

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQ 187
           G CK    D A  +F ++  +  +P+VVTY+ +I G C      EA  LF  M+  G   
Sbjct: 98  GFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCM 157

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN VT+N ++   C+ GKMDEA +LL+ M + G  PD  TY TL++GFC   R++ A +L
Sbjct: 158 PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDL 217

Query: 248 FVSMESMG 255
              M   G
Sbjct: 218 LNQMTRKG 225



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           ++D    P  VTY S+I G C A   +EA  L  EM+  G  P++ T+  ++   CK+ K
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D+A  + + ++  G RPD  TY+ L+DG C  GR+  A +LF  M   G
Sbjct: 105 SDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 154


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 129/241 (53%), Gaps = 19/241 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-V 92
           P  ++  +++  L      D    L + +   G+  +  T+S L++  CK  R+     +
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 93  VLGRILRSCFTPDVVTFTSLIK------------------VCKPDAITYNTIIDGLCKQG 134
           +LG + R  FTPD+VT++++I                    C P AITYN++I G C+ G
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAG 301

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A  L  KM D N  P+V+TYT+++  FC     ++A  LF +M+   + P+VVTF 
Sbjct: 302 DMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFT 361

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D LC  G+M++A  LL+ + + G  P  +TYN ++DG+C + +V  A+EL     S 
Sbjct: 362 SLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSR 421

Query: 255 G 255
           G
Sbjct: 422 G 422



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 27/262 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ IF+ M       P   ++N ++G   +    D  + L  ++      PD+ T++ 
Sbjct: 272 RDAVDIFEEM----SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTT 327

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ FCKMGR+   + +  +++ +  +PDVVTFTSL+                     + 
Sbjct: 328 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG 387

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P   TYN ++DG CK   V KA+EL    + +   PN VTY  ++ G C A   ++A 
Sbjct: 388 CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQAL 447

Query: 176 RLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +   ++  +G     +V  + +I+D LC++G+ D+A    + MIQ G  P A T+ T++ 
Sbjct: 448 QYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVF 507

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
             C   +   A EL   M   G
Sbjct: 508 ALCKAHQPQQAHELLEEMIKYG 529



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 25/240 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +++ ++  L K +  D  ++L    +   G  PD+ T+S +I+  CK GR+     +   
Sbjct: 221 TYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 280

Query: 97  ILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGF 135
           +  SC  P  +T+ SLI                       C PD ITY T++   CK G 
Sbjct: 281 M--SC-APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A ELF +M    + P+VVT+TS++ G C      +A  L  E+  +G  P + T+N 
Sbjct: 338 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNC 397

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK+ ++ +A  L+      G  P+  TYN L+ G C  GR + A +    + S G
Sbjct: 398 VVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +FD M  +       +++  ++  L K +  D  + L   + S G+ P    H+++I
Sbjct: 65  AMALFDKMAEL--GAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVI 122

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
              C+ GR+ H   V               +  +     PD +TY  ++ GL K G +  
Sbjct: 123 GGLCRAGRLRHALGV---------------YRQMNDAHPPDFLTYTKLVHGLSKAGRLRD 167

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++  +M      P+  T T V++  C  +  ++A+ L  EM+ +G+  N +T++ ++D
Sbjct: 168 AVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVD 227

Query: 199 ELCKNGKMDEASS-LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK  ++DEA + LL  + + G  PD  TY+T++DG C  GR+  A ++F   E M C
Sbjct: 228 GLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF---EEMSC 283



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 26/208 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++  L      +  L L + +   G  P +YT++ +++ +CK  +V     +
Sbjct: 355 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEEL 414

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK----------------------PDAIT-YNTIIDGL 130
           +       F P+ VT+  L+  C                       P ++  Y  I+D L
Sbjct: 415 VADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDAL 474

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G  D A + + +M  +   P   T+ +V+   C A+   +A  L  EM+  G  P  
Sbjct: 475 CRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGP 534

Query: 191 VTFNVIMDELCKNG---KMDEASSLLDL 215
            T + ++   C+ G   K DE +S L L
Sbjct: 535 GTCDAVVSAYCRAGMIQKADELASELRL 562



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 21/226 (9%)

Query: 33  PPPVSSFNIMLGCL---AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           P   S+F ++L  L   AK +H   +L     +   GL PD    + ++   C     + 
Sbjct: 7   PSDSSTFAVVLRGLHASAKLRHLGPLL--LDEIRDRGLSPDPVELNTILAELCDARDTTT 64

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +               F  + ++   +  TY  +I  LCK   +D+A  L L MK +
Sbjct: 65  AMAL---------------FDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSR 109

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            + P  + +  VI G C A     A  ++ +M D    P+ +T+  ++  L K G++ +A
Sbjct: 110 GMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDA 168

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +L  M+     PD  T   ++   CL  RV+ A+EL   M   G
Sbjct: 169 VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG 214



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 29/198 (14%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
           GEG +      +AL + + + R    PP + ++N ++    K+        L     S G
Sbjct: 369 GEGRM-----EDALELLEEITR-RGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRG 422

Query: 67  LFPDLYTHSILINCFCKMGRVSHGF---------------------VVLGRILRSCFTPD 105
             P+  T++IL+   C+ GR                          ++L  + R   T D
Sbjct: 423 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 482

Query: 106 VVTFTS--LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
            V F    + +   P A T+ T++  LCK     +A EL  +M      P   T  +V+ 
Sbjct: 483 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVS 542

Query: 164 GFCYANDWNEAKRLFIEM 181
            +C A    +A  L  E+
Sbjct: 543 AYCRAGMIQKADELASEL 560



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI-EMMDQGVQPNVVTFNVIMDE----- 199
           M D     +  T+  V+RG   +        L + E+ D+G+ P+ V  N I+ E     
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 200 -----------------------------LCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
                                        LCK   +DEA  LL  M   G+ P    +N 
Sbjct: 61  DTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNV 120

Query: 231 LLDGFCLTGRVNHAKELFVSM 251
           ++ G C  GR+ HA  ++  M
Sbjct: 121 VIGGLCRAGRLRHALGVYRQM 141


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 132/236 (55%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++            + LF ++ S  + PD+YT SIL++ FCK G +     V
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV 425

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKPDAI--------------TYNTIIDGLCK 132
           L  +++    PDVVT++SL+       +V K ++I              +YN +I+G CK
Sbjct: 426 LAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCK 485

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A +LF +M  K + P+V+TY+S+I G C +   + A  L  EM  +G QP+++T
Sbjct: 486 IKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIIT 545

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N I+D LCK   +D+A +LL  +   G+RPD  TY  L+ G C +G++  A+++F
Sbjct: 546 YNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVF 601



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K+KH +    L+    S  +FPD++T++ LI+ FC +G++     +
Sbjct: 331 PDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++      PDV TF+ L+              DG CK G + +AK +   M  +++KP
Sbjct: 391 FNKMTSKNIIPDVYTFSILV--------------DGFCKDGNIKEAKNVLAMMMKQSIKP 436

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTY+S++ G+C  N+ N+A+ +F  M  +GV  NV ++N++++  CK   +DEA  L 
Sbjct: 437 DVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLF 496

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M    + PD  TY++L+DG C +GR+++A EL   M   G
Sbjct: 497 KEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRG 538



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 21/216 (9%)

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------- 113
           ++   G  PD  T +  I  FC  G++        +++   F  D V++ +LI       
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 114 --------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                         K+ +PD + YNTIIDG+CK   V+ A +L+ +   K + P+V TY 
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I GFC      +A  LF +M  + + P+V TF++++D  CK+G + EA ++L +M++ 
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++PD  TY++L+DG+CL   VN A+ +F +M   G
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRG 468



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 15/216 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M         V S+NIM+    K K  D  + LFK ++   +FPD+ T+S 
Sbjct: 455 NKAESIFNTM-SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK GR+S+   ++  +                +  +PD ITYN+I+D LCK+  V
Sbjct: 514 LIDGLCKSGRISYALELVDEMH--------------YRGQQPDIITYNSILDALCKKHHV 559

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  K+K + ++P++ TYT +++G C +    +A+++F +++ +G   +V  + V+
Sbjct: 560 DKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVM 619

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +   C  G  DEA +LL  M ++G  PDA TY  ++
Sbjct: 620 IQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIII 655



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 74/308 (24%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F  +LR +P+PP +  F  +LG L K+KHY TVLSL +++   G+  +    +I
Sbjct: 92  NDAVSLFYRLLRQNPTPPDIE-FGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNI 150

Query: 77  LINCFCKMGRVSHGFVVLGR------ILRSCFTPDVVTFTSLIKVCKPDAI--------- 121
           LIN FC++G +   F VL R      IL+ CF  D        ++C    I         
Sbjct: 151 LINSFCQLGLIPFAFSVLTRGVYWIEILKDCF--DRKNLEDFKRLCWIVLILWDFKRLFL 208

Query: 122 -------------TYNTIID---GLCKQGFVDKAKELFL-----KMKDKNVKPNVVTYTS 160
                        ++  +I+      KQ  + K+ E+ +     K+     +P+ +T T+
Sbjct: 209 KDFLQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTT 268

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQG----------------------------------- 185
            I+GFC     ++A     +++  G                                   
Sbjct: 269 FIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKL 328

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           VQP+VV +N I+D +CK+  +++A  L    +   + PD FTYN L+ GFC+ G++  A 
Sbjct: 329 VQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAI 388

Query: 246 ELFVSMES 253
           +LF  M S
Sbjct: 389 DLFNKMTS 396


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 129/245 (52%), Gaps = 26/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++    K     + L L  R++ +   PD+ T++ ++   C  G++     V
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 94  LGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           L R + R C+ PDV+T+T LI                     K CKPD +TYN +I+G+C
Sbjct: 235 LDRQMQRECY-PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A      M     +PNV+T+  ++R  C    W +A++   EM+ +G  P+VV
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN++++ LC+ G +  A  +L+ M QHG  P++ +YN LL   C   ++  A E    M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 252 ESMGC 256
            S GC
Sbjct: 414 VSRGC 418



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 18/229 (7%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L +N   +      + +   G  PD+   + LI   CK G+      V+  +  S   PD
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 106 VVTFTSLIK-VCK-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           V+T+  LI   CK                 PD +TYNTI+  LC  G + +A E+  +  
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQM 239

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            +   P+V+TYT +I   C  +   +A +L  EM D+G +P+VVT+NV+++ +CK G++D
Sbjct: 240 QRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLD 299

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           EA   L+ M  +G +P+  T+N +L   C TGR   A++    M   GC
Sbjct: 300 EAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC 348



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 14/226 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   S+N +L  L K+K  +  +     + S G +PD+ T++ L+   CK G+V  
Sbjct: 381 HGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDV 440

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++                K C P  ITYNT+IDGL K G  D A +L  +MK K
Sbjct: 441 AVEILNQLGS--------------KGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK 486

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KP+++TY++++ G       +EA   F ++ + GV+PN +T+N IM  LCK  +   A
Sbjct: 487 GLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRA 546

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              L  M+  G +P   +Y  L++G    G    A EL   + S G
Sbjct: 547 IDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 129/264 (48%), Gaps = 28/264 (10%)

Query: 17  NEALCIFDYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +EA+   ++M    PS    P V + NI+L  +     +         +   G  P + T
Sbjct: 299 DEAIRFLNHM----PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVT 354

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------- 113
            +ILIN  C+ G +     VL ++ +   TP+ +++  L+                    
Sbjct: 355 FNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMV 414

Query: 114 -KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            + C PD +TYNT++  LCK G VD A E+  ++  K   P ++TY +VI G       +
Sbjct: 415 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTD 474

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A +L  EM  +G++P+++T++ ++  L + GK+DEA +    + + GV+P+A TYN+++
Sbjct: 475 DAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIM 534

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C   +   A +    M + GC
Sbjct: 535 LGLCKARQTVRAIDFLAYMVARGC 558



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ F   GR+SHG   L   L    +               + +  N  +  L + G ++
Sbjct: 71  VDTFSSNGRLSHGEKNLHTHLNGSSSSSSSYSNHSQSS---EEVENNNHLRRLVRNGELE 127

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +  +    M  +   P+++  TS+IRG C      +A R+   + D G  P+V+T+NV++
Sbjct: 128 EGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLI 187

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              CK G++  A  LLD M    V PD  TYNT+L   C +G++  A E+ 
Sbjct: 188 SGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVL 235


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D ML +    P + ++N ++  L K    +  + +  ++ S    P+  T++ +I
Sbjct: 327 AMEVVDAML-LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAII 385

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           +  CK  RV     +   +      PDV TF SLI                     K C+
Sbjct: 386 SSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCR 445

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TYN +ID LC    +++A  L  +M+      NVV Y ++I GFC      EA+ +
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM  QGV  + VT+N ++D LCK+ ++++A+ L+D MI  G+RPD FTYN+LL  FC 
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565

Query: 238 TGRVNHAKELFVSMESMGC 256
           TG +  A ++  +M S GC
Sbjct: 566 TGDIKKAADIVQTMTSSGC 584



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 49/256 (19%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-------------------- 75
           VS+FNI++  L K       + + + + S GL PD  T +                    
Sbjct: 203 VSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKE 262

Query: 76  ---------------ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
                          +LIN FCK GR+      +   +   F              +PD 
Sbjct: 263 QMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGF--------------RPDQ 308

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYNT+++GLCK G    A E+   M    + P++ TY S+I G C   +  EA ++  +
Sbjct: 309 FTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQ 368

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +   PN VT+N I+  LCK  ++DEA+ +  L+   G+ PD  T+N+L+ G CL+  
Sbjct: 369 MVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSN 428

Query: 241 VNHAKELFVSMESMGC 256
              A +LF  M+  GC
Sbjct: 429 HKSAMDLFEEMKGKGC 444



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L  + ++ + + LF+ +   G  PD +T+++LI+  C   ++     +
Sbjct: 411 PDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNL 470

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +               +  C  + + YNT+IDG CK   +++A+E+F +M+ + V  
Sbjct: 471 LKEME--------------LNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSR 516

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY ++I G C +    +A +L  +M+ +G++P+  T+N ++   CK G + +A+ ++
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M   G  PD  TY TL+ G C  GRV  A  L  S++  G
Sbjct: 577 QTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 103/221 (46%), Gaps = 16/221 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  IFD M     S   V+ +N ++  L K+K  +    L  ++   GL PD +T++ 
Sbjct: 500 EEAEEIFDEMELQGVSRDSVT-YNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+  FCK G +     +            V T TS    C PD +TY T+I GLCK G V
Sbjct: 559 LLTHFCKTGDIKKAADI------------VQTMTS--SGCNPDIVTYATLISGLCKAGRV 604

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L   ++ K +      Y  VI+     N  +EA RLF EM+D+   P+ +T+ ++
Sbjct: 605 QVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIV 664

Query: 197 MDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              LC  G  + EA      MI+ G  P+  ++  L +G C
Sbjct: 665 YRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLC 705



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 25/219 (11%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFC-----KMGRVSHGFV 92
           F I +    K + YD V+ + K + +   + PD   +++L+N        K+   +H  +
Sbjct: 135 FLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSM 194

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V  RI                   + D  T+N +I  LCK   V  A  +  +M    + 
Sbjct: 195 VRRRI-------------------RHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLS 235

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  T+T++++G+    + + A R+  +M++ G     VT NV+++  CK G++D+A S 
Sbjct: 236 PDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSF 295

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +   +  G RPD FTYNTL++G C  G   HA E+  +M
Sbjct: 296 IQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM 334



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L  ++  +  L+L K +   G   ++  ++ LI+ FCK  R+     +
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +     + D VT+ +LI  +CK                    PD  TYN+++   CK
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA ++   M      P++VTY ++I G C A     A RL   +  +G+      
Sbjct: 566 TGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHA 625

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC-LTGRVNHAKELFVSM 251
           +N ++  L K  +  EA  L   M+     PDA TY  +  G C   G +  A +  V M
Sbjct: 626 YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEM 685

Query: 252 ESMG 255
              G
Sbjct: 686 IERG 689



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEA 174
           C+ D   +   ++   K    D+   +   M+D+  +KP+   Y  ++     AN     
Sbjct: 128 CEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLV 187

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +     M+ + ++ +V TFN+++  LCK  ++  A  +++ M  +G+ PD  T+ T++ G
Sbjct: 188 ESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQG 247

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +   G ++ A  +   M   GC
Sbjct: 248 YIEGGNLDGALRIKEQMVEYGC 269


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 24/256 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R + + P    FNI++G  AK+   D  +  F ++   GL P++ T+  +++  
Sbjct: 333 LLDVMVR-NGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPD 119
           C++G+V        R++    TP+ V F +LI                       +C P+
Sbjct: 392 CRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGIC-PN 450

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            I +NT+++ LCK+G V +AK +F  M   +V+ +V+TYT++I G+C     +EA +L  
Sbjct: 451 TIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLE 510

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+  GV+PN VT+N I++  CKNG++++A SL   M   GV P    Y+T+L G   T 
Sbjct: 511 GMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTR 570

Query: 240 RVNHAKELFVSMESMG 255
           R+  AKEL++ M   G
Sbjct: 571 RIAAAKELYLWMIKCG 586



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 22/265 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
            G  ++  P EA+ IF  M R     P V ++N ++  L KN        +F  +   G 
Sbjct: 249 HGYCSSGKPKEAIGIFRKMCR-DGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGH 307

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------ 115
            PD   +  L++ +   G +     +L  ++R+   PD   F  LI              
Sbjct: 308 KPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAML 367

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P+ +TY T++D LC+ G VD A   F ++  + + PN V + ++I G C
Sbjct: 368 AFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLC 427

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
             + W++A+ L +EM+ +G+ PN + FN +++ LCK G +  A ++ DLM++  V+ D  
Sbjct: 428 ACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVI 487

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
           TY TL+DG+CL G+V+ A +L   M
Sbjct: 488 TYTTLIDGYCLDGKVDEATKLLEGM 512



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 33/260 (12%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD +LR   +   +   N  L  +A+       LSLF R+       DL T+SI+I C 
Sbjct: 54  LFDELLRRDTTS--IFDLNSALSAVARESPA-VALSLFNRMPRA----DLCTYSIVIGCC 106

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPD 119
            + G +   F  LGR++R+ +T   +TF+ L+K                       C P+
Sbjct: 107 SRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPN 166

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK----PNVVTYTSVIRGFCYANDWNEAK 175
           A +YN ++ GLC +    +A  L   M   + +    P+VV+YT+VI G       ++A 
Sbjct: 167 AFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAY 226

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+DQG+ PN +T+N ++   C +GK  EA  +   M + GV PD  TYNTL+   
Sbjct: 227 CLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYL 286

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GR   A+++F SM   G
Sbjct: 287 CKNGRSMEARKVFDSMVKKG 306



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 31/267 (11%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +P  AL +F+ M R       + +++I++GC ++  H D   +   R+  TG      T 
Sbjct: 80  SPAVALSLFNRMPR-----ADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITF 134

Query: 75  SILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           S L+   C   R S    + L R+     TP+  ++  L+K                   
Sbjct: 135 SPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMM 194

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                  C PD ++Y T+I+GL ++G +DKA  LF +M D+ + PN +TY  ++ G+C +
Sbjct: 195 ADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSS 254

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               EA  +F +M   GV+P+VVT+N +M  LCKNG+  EA  + D M++ G +PD+  Y
Sbjct: 255 GKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIY 314

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
            TLL G+   G +    +L   M   G
Sbjct: 315 GTLLHGYATEGYLVQMHQLLDVMVRNG 341



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+  ++  L +    D    LF  +   G+ P+  T++ L++ +C  G+      
Sbjct: 203 PPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIG 262

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  ++ R    PDVVT+ +L+                     K  KPD+  Y T++ G  
Sbjct: 263 IFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYA 322

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            +G++ +  +L   M     +P+   +  +I  +      +EA   F +M  QG+ PN+V
Sbjct: 323 TEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIV 382

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  +MD LC+ GK+D+A S  D +I  G+ P+   + TL+ G C   + + A+EL V M
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEM 442

Query: 252 ESMG 255
              G
Sbjct: 443 IGRG 446



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  FD ++    +P  V    ++ G  A +K +D    L   +   G+ P+    + 
Sbjct: 398 DDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDK-WDKAEELAVEMIGRGICPNTIFFNT 456

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV-------------- 115
           L+N  CK G V+    +   ++R     DV+T+T+LI       KV              
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG 516

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ +TYNTII+G CK G ++ A  LF +M  K V P +V Y++++ G         AK
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAK 576

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKN-------------------------------- 203
            L++ M+  G++  + T+N+I+  LC+N                                
Sbjct: 577 ELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDAL 636

Query: 204 ---GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G+ DEA  L   ++  G+ P+  TY  ++      G +    +LF+S+E  GC
Sbjct: 637 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGC 692



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++    KN   +   SLF+++ S G+ P +  +S +++   +  R++    +
Sbjct: 519 PNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKEL 578

Query: 94  LGRILRSCFTPDVVTFTSLIKV-----CKPDAI----------------TYNTIIDGLCK 132
              +++      + T+  +++      C  DA+                T+N +ID L K
Sbjct: 579 YLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+AK+LF  +  + + PNVVTY  +++         E   LF+ +   G   +   
Sbjct: 639 GGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRM 698

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            N ++ +L + G++ +A   L  + ++    +A T  +L+
Sbjct: 699 LNALVGKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLV 738


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K       + L + + + G  PD+ T++IL++  CK  +V+  + V
Sbjct: 111 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 170

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L +   P++VT+ SL+                     + C P+ +TY T+IDGLCK
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 133 QGFVDKAKELFLKMKDKN-----------------------------------VKPNVVT 157
            G V  A  +   M DK                                    +KP+VVT
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 290

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+SVI G C +N  +EA RL + +  +G  P+V+ ++ ++D LCK GK+DEA  L ++M 
Sbjct: 291 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMT 350

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G   D  TY+TL+DG C  GRV+ A  L   M  MG
Sbjct: 351 GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L + +     L+L + +   G  P++ T+  LI+  CK+GRV     +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  ++    TPD++ +  LI  +CK                    PD +TY+++I GLC+
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A  L L +K +   P+V+ Y+++I G C A   +EA  L+  M   G   +VVT
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVT 360

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK G++DEA  LL  M++ G  P   TYN+L+ G C    ++ A EL   ME
Sbjct: 361 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 420

Query: 253 SMGC 256
              C
Sbjct: 421 RSNC 424



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 21/249 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H   P V ++N ++  L KN   D    LF+ + S    P + T++ L++   + G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTI 126
           +     +   +L    + DV++F  L+                      C P+ ITY+ +
Sbjct: 61  LERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVL 119

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           IDGLCK   V +A EL   MK +   P+V+TYT ++ G C  +    A  +  EM+D G 
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PN+VT+N ++  LC+  ++ +A +L+  M   G  P+  TY TL+DG C  GRV  A  
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 239

Query: 247 LFVSMESMG 255
           +   M   G
Sbjct: 240 MLADMIDKG 248



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K        ++   +   G  PDL  +++LIN  CK  +V     +
Sbjct: 216 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 275

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R +     PDVVT++S+I                     + C PD I Y+T+IDGLCK
Sbjct: 276 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A +L+  M       +VVTY+++I G C A   +EA  L   M+  G  P+ +T
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMT 395

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +N ++  LC    +DEA  L++ M +    P A TYN L+ G C   RV+ A
Sbjct: 396 YNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSA 447



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 22/224 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N+++  L K    D  ++L +R  S G+ PD+ T+S +I   C+  R+     +
Sbjct: 251 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 310

Query: 94  LGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNTIIDGLCK 132
           L  +      PDV+ +++LI       KV              C  D +TY+T+IDGLCK
Sbjct: 311 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCK 370

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A  L  +M      P+ +TY S+I+G C  N  +EA  L  EM      P+ VT
Sbjct: 371 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVT 430

Query: 193 FNVIMDELCKNGKMDEAS-SLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N+++  +C+  ++D A+      MI +GV PD  TY+ LL+G 
Sbjct: 431 YNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGL 474



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V  ++ ++  L K    D    L++ +   G   D+ T+S LI+  CK GRV    +
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHL 379

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L R++R   TP             P  +TYN++I GLC    +D+A EL  +M+  N  
Sbjct: 380 LLARMVRM-GTP-------------PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 425

Query: 153 PNVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           P+ VTY  +I G C     + A    F EM+D GV P+ +T++++++ L K+  + E   
Sbjct: 426 PSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRH 485

Query: 212 L-LDLMIQHGVR 222
           L LD M+Q G R
Sbjct: 486 LVLDQMVQLGYR 497



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 16/129 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+RM  +PP   ++N ++  L    H D  + L + +  +   P   T++I
Sbjct: 375 DEAHLLLARMVRM-GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 433

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGF 135
           LI+  C+M RV               +  +  F  +I     PD ITY+ +++GL K   
Sbjct: 434 LIHGMCRMERVD--------------SAALDYFQEMIDNGVIPDHITYSILLEGLKKSKD 479

Query: 136 VDKAKELFL 144
           + + + L L
Sbjct: 480 LHELRHLVL 488


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF+ M++    P   +  +++ G   +    D + ++   +   G+ PD +  +I 
Sbjct: 28  EAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVD-MNNVKDLMVQNGMRPDRHVFNIE 86

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +CK GR+    +   ++ +  F PD+VT+T              T+IDGLCK G +D
Sbjct: 87  IYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYT--------------TVIDGLCKIGRLD 132

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D  + PN++T+T++I GF     W +A+ LF EMMD+G+ PNV TFN ++
Sbjct: 133 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMI 192

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D L K GK+ EA  L DLM + G +P+  +YNT++ G+ + G V    +L   M  +G
Sbjct: 193 DRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 250



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEA 174
           P+ +TY+ +I+ LCK G   +A+E+F  M     KPN  TY S++ G+       D N  
Sbjct: 8   PNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNV 67

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L ++    G++P+   FN+ +   CK G++DEAS   + M Q G  PD  TY T++DG
Sbjct: 68  KDLMVQ---NGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDG 124

Query: 235 FCLTGRVNHAKELFVSM 251
            C  GR++ A   F  M
Sbjct: 125 LCKIGRLDDAMSRFCQM 141



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 58/103 (56%)

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTY+ +I   C +    EA+ +F  M+  G +PN  T+  ++      G + + +++
Sbjct: 8   PNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNV 67

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            DLM+Q+G+RPD   +N  +  +C  GR++ A   F  M+ +G
Sbjct: 68  KDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLG 110



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G  PNVVT++++++ LCK+G   EA  + + MIQ G +P+A TY +LL G+   G 
Sbjct: 1   MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60

Query: 241 V---NHAKELFVS 250
           +   N+ K+L V 
Sbjct: 61  LVDMNNVKDLMVQ 73


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 24/246 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V  +N M+         D    L   +    + PD YT++ LI   C  GR S+  
Sbjct: 130 SGPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNAL 186

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            VL  + R    PDVVT+T L+                     K C PD +TYN +++G+
Sbjct: 187 AVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGI 246

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G V+ A E    +     +PN V+Y  V++G   A  W +A++L  EM  +G  PNV
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTFN+++  LC+ G ++ A  +L+ M Q+G  P++ +YN LL  FC   +++ A E    
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL 366

Query: 251 MESMGC 256
           M S GC
Sbjct: 367 MVSRGC 372



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 25/246 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-- 90
           PP V +FN+++  L +    +  + + +++   G  P+  +++ L++ FCK  ++     
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAME 362

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
           FV L  + R C+ PD+V++ +L+                     K C P  I+YNT+IDG
Sbjct: 363 FVEL-MVSRGCY-PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDG 420

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K G   +A EL  +M  K ++P+++TY+++  G C  +   EA R F ++ D G++P 
Sbjct: 421 LTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPT 480

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
              +N I+  LCK  +   A  L   MI  G  P+  TY  L++G    G V  A+ELF 
Sbjct: 481 AALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFA 540

Query: 250 SMESMG 255
            + S G
Sbjct: 541 QLCSRG 546



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L + +   G  P++ T ++LI+  C+ G V     V
Sbjct: 269 PNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEV 328

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++ +   TP+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 329 LEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCR 388

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM  +G+QP+++T
Sbjct: 389 NGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIIT 448

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+  +++EA      +   G+RP A  YN +L G C     ++A +LF  M 
Sbjct: 449 YSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMI 508

Query: 253 SMGC 256
           S GC
Sbjct: 509 SSGC 512



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL + + M R     P V ++ I+L    K   Y   + L   ++  G  PD+ T+++
Sbjct: 183 SNALAVLEDMFR-RGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNV 241

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  C+ GRV              F  ++ ++      C+P+ ++YN ++ GL      
Sbjct: 242 VLNGICQEGRVEDAME---------FLKNLPSYG-----CEPNTVSYNIVLKGLFTAERW 287

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A++L  +M  K   PNVVT+  +I   C       A  +  +M   G  PN +++N +
Sbjct: 288 EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPL 347

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   CK  K+ +A   ++LM+  G  PD  +YNTLL   C  G V+ A EL   ++  GC
Sbjct: 348 LHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGC 407



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N +L  L +N   D  + L  +L   G  P L +++ +I+   K G+      +
Sbjct: 374 PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALEL 433

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L          D +T   L    +PD ITY+TI  GLC++  +++A   F K++D  ++P
Sbjct: 434 L----------DEMTSKGL----QPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRP 479

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
               Y +++ G C   + + A  LF  M+  G  PN  T+ ++++ L   G + EA  L 
Sbjct: 480 TAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELF 539

Query: 214 DLMIQHGV 221
             +   GV
Sbjct: 540 AQLCSRGV 547


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 125/275 (45%), Gaps = 59/275 (21%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N M+         D    L   +    + PD YT++ LI   C  GR ++   VL  +
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           LR    PDVVT+T L+                     K C PD +TYN +++G+C++G V
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A E    +     +PN V+Y  V++G C A  W +A+ L  EM  +G  PNVVTFN++
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178

Query: 197 MDELCKNG-----------------------------------KMDEASSLLDLMIQHGV 221
           +  LC+ G                                   KMD+A + LDLM+  G 
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 238

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            PD  +YNTLL   C +G V+ A EL   ++  GC
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 273



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L   +   G  P++ T ++LI+  C+ G V     V
Sbjct: 135 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 194

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +I +   TP+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 195 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 254

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 255 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 314

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+  ++++A      +   G+RP+   YN ++ G C     + A +LF  M 
Sbjct: 315 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI 374

Query: 253 SMGC 256
             GC
Sbjct: 375 GNGC 378



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 123/238 (51%), Gaps = 23/238 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L +    +  L + +++   G  P+  +++ L++ FCK  ++     
Sbjct: 169 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 228

Query: 93  VLGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            L  ++ R C+ PD+V++ +L+                     K C P  I+YNT+IDGL
Sbjct: 229 FLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 287

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G   +A EL  +M  K ++P+++TY+++  G C  +   +A R F ++ D G++PN 
Sbjct: 288 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 347

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           V +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G +  A++L 
Sbjct: 348 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 405



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 21/202 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N +L    K K  D  ++    + S G +PD+ +++ L+   C+ G V     +
Sbjct: 205 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 264

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++      P ++++ ++I                     K  +PD ITY+TI  GLC+
Sbjct: 265 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 324

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  ++ A   F K++D  ++PN V Y ++I G C   + + A  LF  M+  G  PN  T
Sbjct: 325 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 384

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
           + ++++ L   G + EA  LLD
Sbjct: 385 YTILIEGLAYEGLIKEARDLLD 406



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C  G +D A+ L  +M    V+P+  TY ++IRG C       A  +  E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +   P+VVT+ ++++  CK     +A  LLD M   G  PD  TYN +++G C  GR
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 241 VNHAKELFVSMESMGC 256
           V+ A E   ++ S GC
Sbjct: 118 VDDAIEFLKNLPSYGC 133



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N +L  L ++   D  + L  +L   G  P L +++ +I+   K G+      +
Sbjct: 240 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 299

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  ++     PD++T++++   +C+                    P+ + YN II GLCK
Sbjct: 300 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 359

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +     A +LF  M      PN  TYT +I G  Y     EA+ L  E+  +  +  ++ 
Sbjct: 360 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRAGEEILLD 419

Query: 193 FNVI 196
            ++I
Sbjct: 420 VHLI 423


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 148/262 (56%), Gaps = 26/262 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ + +YM R+H   P + +  ++L  LAK++  DTV   +K++   G+ P+++ ++
Sbjct: 136 PQDAIQVLEYM-RLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYN 194

Query: 76  ILINCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKV------------------- 115
           +LI+  CK G V     ++  + L+S F PD+ T+ +LI +                   
Sbjct: 195 VLIHACCKSGDVEKAEQLVCEMELKSVF-PDLYTYNTLISLYSRKSLHYEALCVQDRMER 253

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD +TYN++I G CK+G + +A +LF ++KD  V PN VTYT++I G+C  ND+ E
Sbjct: 254 AGVSPDIVTYNSLIYGFCKEGKMREAVKLFREIKD--VSPNHVTYTTLIDGYCRVNDFEE 311

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A RL   M  +G+   V T+N ++ +LC+ G++ +A+ LL+ M +  V PD  T NTL++
Sbjct: 312 ALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLIN 371

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            +C  G +  A ++   M   G
Sbjct: 372 AYCKIGDMKSALKVKSKMLDAG 393



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 24/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EALC+ D M R   SP  V+  +++ G   + K  + V  LF+ +      P+  T++ L
Sbjct: 243 EALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAV-KLFREIKDVS--PNHVTYTTL 299

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ +C++        +   +        V T+ S++ K+C+                   
Sbjct: 300 IDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKV 359

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T NT+I+  CK G +  A ++  KM D  ++ +  TY ++I GFC+  D   AK 
Sbjct: 360 EPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKE 419

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+D G+ P   T++ ++D  C+ G      SLLD  +  G   D      L+   C
Sbjct: 420 LLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLC 479

Query: 237 LTGRVNHAKELFVSMESMG 255
              RV  A++++ +M   G
Sbjct: 480 HQERVGFAEKIYSTMHLRG 498



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 3/236 (1%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ +   F ++  +      + S   M+  L ++KH+ T   L +++            +
Sbjct: 48  PSLSWAFFKWVELIPDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLN 107

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTP-DVVTFTSLIKV--CKPDAITYNTIIDGLCK 132
            L+  +      +H    L  I  +C  P D +     +++   KP+      +++ L K
Sbjct: 108 ALVTSYDNPDVNAHILSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAK 167

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D   + + KM    V PN+  Y  +I   C + D  +A++L  EM  + V P++ T
Sbjct: 168 DRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYT 227

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N ++    +     EA  + D M + GV PD  TYN+L+ GFC  G++  A +LF
Sbjct: 228 YNTLISLYSRKSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLF 283



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N +L  L +         L   +    + PD  T + LIN +CK+G +     V  
Sbjct: 328 VATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKS 387

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           ++L +                + D+ TY  +I G C    ++ AKEL   M D  + P  
Sbjct: 388 KMLDAGL--------------QLDSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGY 433

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY+ ++ G+C   +      L  E + +G   ++     ++  LC   ++  A  +   
Sbjct: 434 CTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQERVGFAEKIYST 493

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           M   GV  D+  Y +L   +   G+ N   E+   M
Sbjct: 494 MHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEM 529



 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
            GL P   T+S L++ +C++G       +L   L   +  D       + VC+       
Sbjct: 427 VGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVD-------LSVCR------- 472

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I  LC Q  V  A++++  M  + V  + V YTS+   +      N    +  EM  +
Sbjct: 473 ALIRRLCHQERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEMTKR 532

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +  N+  +       C N      +S+L L   H
Sbjct: 533 SLLINLKLYR------CFNASYGPHNSILHLFWDH 561


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN ++  L      +  L L +++   GL PD+YT +ILIN  CK+G       +
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+ +LI                       C    +TYNTIIDGLCK
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  N +T+ ++I G C     ++A +L  +M+ +G+QPN +T
Sbjct: 478 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNIT 537

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L  M  +G   D  TY TL++G C  GR   A +L   M 
Sbjct: 538 YNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMR 597

Query: 253 SMG 255
             G
Sbjct: 598 IKG 600



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D M++     P V ++NI++ CL KN   +    +  ++   G  PD+ T + LI
Sbjct: 309 ALKVMDVMVQ-EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C   R+     +  ++     +PDV TF  LI                       C 
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT 427

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYNT+ID LC  G + KA +L  +M+      + VTY ++I G C      EA+ +
Sbjct: 428 PDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEV 487

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+  N +TFN ++D LCK+ ++D+A+ L+  MI  G++P+  TYN++L  +C 
Sbjct: 488 FDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCK 547

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A ++  +M + G
Sbjct: 548 QGDIKKAADILQTMTANG 565



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +       L +  R+   G  P   T ++LIN +CK+GRV      
Sbjct: 218 PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGY 277

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + + + + F PD +T+ + +  +C+                    PD  TYN +++ LCK
Sbjct: 278 IQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M ++   P++ T+ ++I   C  N   EA  L  ++  +G+ P+V T
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYT 397

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYNTL+D  C  G++  A +L   ME
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457

Query: 253 SMGC 256
           S GC
Sbjct: 458 SAGC 461



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  L +      + +++  +   G+ PD+ T + L+   C+  +V    ++L  + 
Sbjct: 153 YNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
            S   PD  TFT+L++                      C P  +T N +I+G CK G V+
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVE 272

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ +TY + + G C       A ++   M+ +G  P+V T+N+++
Sbjct: 273 DALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVV 332

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKNG+++EA  +L+ M++ G  PD  T+NTL+   C   R+  A +L
Sbjct: 333 NCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       L LF+ + S+G  PD  T++ LI+  C +G++     +
Sbjct: 393 PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDL 452

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      VT+ ++I  +CK                     +AIT+NT+IDGLCK
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 512

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A +L  +M  + ++PN +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 513 DKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVT 572

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  LL  M   G+R     YN ++           A  LF  M 
Sbjct: 573 YGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMT 632

Query: 253 SMG 255
            +G
Sbjct: 633 EVG 635



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +T+NT++  LC+   V  A  +  +M    V P+  T+T++++GF        A R
Sbjct: 182 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR 241

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M++ G  P  VT NV+++  CK G++++A   +   I +G  PD  TYNT ++G C
Sbjct: 242 VKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLC 301

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V HA ++   M   G
Sbjct: 302 QNGHVGHALKVMDVMVQEG 320



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 23/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL +F+ M     +P  V+ +N ++  L         L L K + S G      T++
Sbjct: 411 PQLALRLFEEMKSSGCTPDEVT-YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYN 469

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     + + +TF +LI  +CK                 
Sbjct: 470 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE 529

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 530 GLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVA 589

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L   M  +G++     +N ++  L +     +A +L   M + G  PDAFTY  +  G
Sbjct: 590 LKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRG 649

Query: 235 FCL-TGRVNHAKELFVSMESMG 255
            C   G +  A +  + M   G
Sbjct: 650 LCRGGGSIREAFDFLLEMVDKG 671



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + YN +++ L +   +   + ++ +M ++ +KP+VVT+ ++++  C A+    A  
Sbjct: 147 QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL 206

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM   GV P+  TF  +M    + G +  A  +   M++ G  P   T N L++G+C
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC 266

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 267 KLGRVEDA 274



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 23/225 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M     S   ++ FN ++  L K+K  D    L  ++ S GL P+  T++ +
Sbjct: 483 EAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSI 541

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------- 121
           +  +CK G +     +L  +  + F  DVVT+ +LI  +CK                   
Sbjct: 542 LTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGM 601

Query: 122 -----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNEAK 175
                 YN +I  L ++     A  LF +M +    P+  TY  V RG C       EA 
Sbjct: 602 RATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAF 661

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
              +EM+D+G  P   +F ++ + L   G  D     ++++I+  
Sbjct: 662 DFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKA 706



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 132 KQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           +Q FVD A +L L   D    ++ + V Y  ++      +     + ++ EM ++G++P+
Sbjct: 126 QQLFVD-AVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPD 184

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           VVTFN +M  LC+  ++  A  +L+ M   GV PD  T+ TL+ GF   G +  A  +  
Sbjct: 185 VVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKA 244

Query: 250 SMESMGC 256
            M  MGC
Sbjct: 245 RMLEMGC 251


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+R     P + +FN ++  + K    +    +F  +   GL PD  +++ L+  +CK+G
Sbjct: 217 MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYN 124
                  V   + R    PDVVTFTSLI V CK                     + IT+ 
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT 336

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +IDG CK+GF+D A     +M+   ++P+VV Y ++I G+C     +EA+ L  EM  +
Sbjct: 337 ALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           GV+P+VVT++ I+   CKNG    A  L   M+++GV PDA TY++L+   C   R+  A
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456

Query: 245 KELFVSMESMG 255
             LF +M S+G
Sbjct: 457 HVLFKNMISLG 467



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD ML      P V ++NI++  L    H    LS+ + +   G  P+  T++ L+  FC
Sbjct: 145 FDSMLS-DGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFC 203

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAI 121
           + G V     ++  +      P++VTF S++  +CK                    PD +
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV 263

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YNT++ G CK G   +A  +F +M  K + P+VVT+TS+I   C A +   A  L  EM
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREM 323

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            ++G+Q N +TF  ++D  CK G +D+A   +  M Q  ++P    YN L++G+C+ GR+
Sbjct: 324 RERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRM 383

Query: 242 NHAKELFVSMESMG 255
           + A+EL   ME+ G
Sbjct: 384 DEARELVREMEAKG 397



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 134/259 (51%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M++   +P  VS +N ++G   K       LS+F  +   G+ PD+ T + L
Sbjct: 245 DARKVFDEMVKEGLAPDGVS-YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVCK- 117
           I+  CK G +     ++  +       + +TFT+LI                   + C+ 
Sbjct: 304 IHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  + YN +I+G C  G +D+A+EL  +M+ K VKP+VVTY++++  +C   D + A +
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M++ GV P+ +T++ ++  LC+  ++ +A  L   MI  G++PD  TY +L+DG C
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHC 483

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V  A  L   M   G
Sbjct: 484 KEGNVERALSLHDEMVKAG 502



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 126/257 (49%), Gaps = 24/257 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M R     P V +F  ++  + K  + +  + L + +   GL  +  T + 
Sbjct: 279 HEALSVFAEMTR-KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC-FTPDVVTFTSLI---------------------K 114
           LI+ FCK G +    + + R +R C   P VV + +LI                     K
Sbjct: 338 LIDGFCKKGFLDDALLAV-REMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KPD +TY+TI+   CK G    A +L  +M +  V P+ +TY+S+IR  C      +A
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  M+  G+QP+ VT+  ++D  CK G ++ A SL D M++ GV PD  TY+ L++G
Sbjct: 457 HVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLING 516

Query: 235 FCLTGRVNHAKELFVSM 251
              + R   A+ L   +
Sbjct: 517 LSKSARTKEAQRLLFKL 533



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 15/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L+ +    +    F  + S G+ P++YT++IL+   C  G       V
Sbjct: 121 PSVLAYNAVLLALS-DASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R +R                C P+A+TYNT++   C+ G VD+A+ L   M++  +KP
Sbjct: 180 L-RDMRGAG-------------CDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKP 225

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+VT+ SV+ G C A    +A+++F EM+ +G+ P+ V++N ++   CK G   EA S+ 
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVF 285

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G+ PD  T+ +L+   C  G +  A  L   M   G
Sbjct: 286 AEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 19/192 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--TSLIKVCKPDAITY 123
           G  P +  ++ ++                   L     P    F  + L     P+  TY
Sbjct: 118 GYAPSVLAYNAVL-----------------LALSDASLPSARRFFDSMLSDGVAPNVYTY 160

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N ++  LC +G   +A  +   M+     PN VTY +++  FC A + + A+RL   M +
Sbjct: 161 NILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE 220

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            G++PN+VTFN +++ +CK G+M++A  + D M++ G+ PD  +YNTL+ G+C  G  + 
Sbjct: 221 GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHE 280

Query: 244 AKELFVSMESMG 255
           A  +F  M   G
Sbjct: 281 ALSVFAEMTRKG 292



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 29/233 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++         D    L + + + G+ PD+ T+S +++ +CK G     F +
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++L +   PD +T++SLI+V              LC++  +  A  LF  M    ++P
Sbjct: 425 NQQMLENGVLPDAITYSSLIRV--------------LCEEKRLGDAHVLFKNMISLGLQP 470

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTYTS+I G C   +   A  L  EM+  GV P+VVT++V+++ L K+ +  EA  LL
Sbjct: 471 DEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLL 530

Query: 214 DLMIQHGVRPDAFTYN---------------TLLDGFCLTGRVNHAKELFVSM 251
             +      P    Y+                LL GFC+ G +N A +++ S+
Sbjct: 531 FKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSI 583



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 108/239 (45%), Gaps = 2/239 (0%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  M+ +   P  V+  +++ G   K  + +  LSL   +   G+ PD+ T+S+L
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDG-HCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFV 136
           IN   K  R      +L ++      P  + + +L++ C+   + +   ++ G C +G +
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLM 573

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +++  + D+N   +   Y+ +I G C   +  +A     +M+  G  PN  +   +
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISL 633

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L + G + EA  ++  ++      DA     L+D     G V+   ++   M   G
Sbjct: 634 IRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDG 692



 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+V+ +N ++  L  +  +  A    D M+  GV P+ +TYN L+   C  G    A
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 245 KELFVSMESMGC 256
             +   M   GC
Sbjct: 177 LSVLRDMRGAGC 188


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + N++L  +      D  L L + L S G  PD+ +++ ++   C   R      ++ 
Sbjct: 192 VGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELME 251

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++R    P++VTF +LI                       C PD   Y TIIDG+CK+G
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEG 311

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A E+  +M    +KPNVV Y ++++G C A  W E + L  EM D+    + VTFN
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++D  C+NG +D    LL+ M++ G  PD  TY T+++GFC  G ++ A  L  SM + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 255 GC 256
           GC
Sbjct: 432 GC 433



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + M+RM   PP + +FN ++  L +N  ++ V  +  ++   G  PD+  ++ +I+  
Sbjct: 249 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVV---------------------------------- 107
           CK G +     +L R+      P+VV                                  
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 108 -TFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            TF  L+                     + C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN ++YT V++G C A  W +A+ L  +M+ QG   N +TFN +++ LCK G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+ + A EL   M + G
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 537



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C  + IT+NT+I+ LCK+G V
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A   +EA  L   M+++G+ PN + ++ I
Sbjct: 489 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 548

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C  G    A E    M S GC
Sbjct: 549 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGC 608



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP-----DVV--------TFTSLIKV 115
           P+ YT+  ++   C  GR++    VL  + R    P      V+         F S ++V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C  D    N +++ +C QG VD+A  L   +     +P+VV+Y +V++G C 
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W   + L  EM+     PN+VTFN ++  LC+NG  +    +L  M++HG  PD   
Sbjct: 240 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRM 299

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y T++DG C  G +  A E+   M S G
Sbjct: 300 YATIIDGICKEGHLEVAHEILNRMPSYG 327



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A TY  ++  LC +G +  A  +  +M  +   P    Y  ++   C    +  A R+
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             ++  +G   +V   N++++ +C  G +DEA  LL  +   G  PD  +YN +L G C+
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  M C
Sbjct: 240 AKRWGCVQELMEEMVRMAC 258



 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A     A+RL   +    V PN  T+  ++  LC  G++ +A ++LD M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV---PVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  P    Y+ +L+  C  G    A  +   + + GC
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGC 188


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++ N ++  LA++++Y    S+++R+    + P   + S LI CF    +   GF V
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 94  LGRILRSCFT-----------------------------------PDVVTFTSLIK-VCK 117
           +G +L+  FT                                   PD+V++ +LI  +CK
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               P+++T  T++DGLCK G +D+A EL   MK K    +VV 
Sbjct: 192 AKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVL 251

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I GFC   + +  K LF EM+ +G+  NVVT++ ++  LC+ G+  EA+++L+ M 
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 311

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +HG+ PD  TY  L+DG C  GR  HA +L   M   G
Sbjct: 312 EHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 349



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R   SP  VS +N ++  L K K     + L   + + G FP+  T + L
Sbjct: 162 EAMGLIREMGRKSVSPDIVS-YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTL 220

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++  CK GR+     +L  + +  F  DVV               Y T+I G C  G +D
Sbjct: 221 MDGLCKDGRMDEAMELLEAMKKKGFDADVVL--------------YGTLISGFCNNGNLD 266

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           + KELF +M  K +  NVVTY+ ++ G C    W EA  +   M + G+ P+VVT+  ++
Sbjct: 267 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 326

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK+G+   A  LL+LM++ G  P   TYN LL G C  G V  A ++   M   G
Sbjct: 327 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 384



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EAL +F+ M        P V +FN+++G L K       + + +++   G   +L T++
Sbjct: 406 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 465

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           +L+    K G++     +  ++L   F P+  T++ LI   CK                 
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 525

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P    YNT++  LCK+G +++AK LF +M + N +P+++++ ++I G   A D+   
Sbjct: 526 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFV 585

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L ++M++ G++P+ +TF+ +++ L K G++DEA S L+ M+  G  PDA  Y++LL G
Sbjct: 586 KELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG 645

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G       L   M + G
Sbjct: 646 LSSKGDTTEIINLLHQMAAKG 666



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M   H   P V ++  ++  L K+      + L   +   G  P   T+++L
Sbjct: 302 EANTVLNAMAE-HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           ++  CK G V   F +L  ++      DVVT+ +L+K +C                    
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +P+  T+N +I GLCK+G + KA ++  KM  K    N+VTY  ++ G   A    EA
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L+ +++D G  PN  T+++++D  CK   ++ A  L   M  HG+ P  F YNTL+  
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G +  AK LF  M +  C
Sbjct: 541 LCKEGSLEQAKSLFQEMGNANC 562



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 21/220 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N++LG   K       + L+K++   G  P+ +T+SILI+ FCKM  ++    +   +
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 522

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P +  + +L+                       C+PD I++NT+IDG  K G  
Sbjct: 523 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDF 582

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
              KEL +KM +  ++P+ +T++++I       + +EAK     M+  G  P+ + ++ +
Sbjct: 583 QFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSL 642

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  L   G   E  +LL  M   G   D    +T+L   C
Sbjct: 643 LKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 100 SCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           S FT  V  F S +     P   T N ++D L +      A  ++ +M   +V P+  + 
Sbjct: 53  SQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSL 112

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           +++I  F  A        +   ++ +G   NV   N+++  LC+NG + EA  L+  M +
Sbjct: 113 SALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGR 172

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             V PD  +YNTL++G C   ++  A  L + ME+ GC
Sbjct: 173 KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGC 210


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + N++L  +      D  L L + L S G  PD+ +++ ++   C   R      ++ 
Sbjct: 192 VGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELME 251

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++R    P++VTF +LI                       C PD   Y TIIDG+CK+G
Sbjct: 252 EMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEG 311

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A E+  +M    +KPNVV Y ++++G C A  W E + L  EM D+    + VTFN
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++D  C+NG +D    LL+ M+ HG  PD  TY T+++GFC  G ++ A  L  SM + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 255 GC 256
           GC
Sbjct: 432 GC 433



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + M+RM   PP + +FN ++  L +N  ++ V  +  ++   G  PD+  ++ +I+  
Sbjct: 249 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN ++YT V++G C A  W +A+ L  +M+ QG   N +TFN +++ LCK G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+ + A EL   M + G
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 537



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C  + IT+NT+I+ LCK+G V
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A   +EA  L   M+++G+ PN + ++ I
Sbjct: 489 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 548

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C  G    A E    M S GC
Sbjct: 549 ASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGC 608



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP-----DVVT--------FTSLIKV 115
           P+ YT+  ++   C  GR++    VL  + R    P      V+         F S ++V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C  D    N +++ +C QG VDKA  L   +     +P+VV+Y +V++G C 
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W   + L  EM+     PN+VTFN ++  LC+NG  +    +L  M +HG  PD   
Sbjct: 240 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRM 299

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y T++DG C  G +  A E+   M S G
Sbjct: 300 YATIIDGICKEGHLKVAHEILNRMPSYG 327



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A TY  ++  LC +G +  A  +  +M  +   P    Y  ++   C    +  A R+
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             ++  +G   +V   N++++ +C  G +D+A  LL  +   G  PD  +YN +L G C+
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  M C
Sbjct: 240 AKRWGCVQELMEEMVRMAC 258



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN ++ G C+ G ++ A+ L   +    V PN  TY  V+R  C      +A  +  EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G  P    ++VI++  C+ G    A  +L+ +   G   D    N +L+  C  G V+
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 243 HAKELFVSMESMGC 256
            A  L   + S GC
Sbjct: 210 KALHLLRDLPSFGC 223


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 59/281 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           +P  V ++N ++    +    D    L   + S  + PD YT++ +I   C  GRV    
Sbjct: 105 APVDVFAYNTLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPIIRGLCDRGRVGDAL 161

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +L  +L+    P VVT+T L+                     K C P+ +TYN II+G+
Sbjct: 162 ALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGM 221

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G VD AKE+  ++     +P++V+YT+V++G C A  W++ K LF EM+D+   PN 
Sbjct: 222 CREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNE 281

Query: 191 VTF-----------------------------------NVIMDELCKNGKMDEASSLLDL 215
           VTF                                   N++++ +CK G++D+A   L+ 
Sbjct: 282 VTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN 341

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M  +G  PD  +Y T+L G C  GR  HAKEL   M    C
Sbjct: 342 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC 382



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 57/287 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D ML+     P V ++ ++L  + K+  +   +++   + + G  P++ T++++
Sbjct: 159 DALALLDDMLQ-RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVI 217

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           IN  C+ GRV     +L R+    F PD+V++T+++                     K C
Sbjct: 218 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYD 337

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V+RG C A  W  AK L  EM+ +   PN VTFN  +  LC
Sbjct: 338 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILC 397

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + G +++A  L++LM ++G      TYN L+ GFC+ GRV+ A ELF
Sbjct: 398 QKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 444



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 18/217 (8%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
           L +  +S G  PD+Y  + LI   C+ GR S    VL     S    DV  + +L+   C
Sbjct: 61  LVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYC 120

Query: 117 K-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           +                 PDA TY  II GLC +G V  A  L   M  +  +P+VVTYT
Sbjct: 121 RYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYT 180

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            ++   C ++ + EA  +  EM  +G  PN+VT+NVI++ +C+ G++D+A  +L+ +  +
Sbjct: 181 VLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSY 240

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G +PD  +Y T+L G C   R +  K LF  M    C
Sbjct: 241 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+  +L  L   + +D V  LF  +      P+  T  +L+  FC+ G V     V
Sbjct: 244 PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQV 303

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L ++ +   TP+      +I                       C PD I+Y T++ GLC+
Sbjct: 304 LQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCR 363

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  + AKEL  +M  KN  PN VT+ + I   C      +A +L   M + G    +VT
Sbjct: 364 AGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVT 423

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C  G++D A   L+L       P+  TY TLL G C   R++ A EL   M 
Sbjct: 424 YNALVHGFCVQGRVDSA---LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMI 480

Query: 253 SMGC 256
              C
Sbjct: 481 QKDC 484



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 59/285 (20%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P  +  NI++  + K    D        +   G  PD  +++ ++   C+ GR
Sbjct: 307 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
             H   +L  ++R    P+ VTF + I +                     C    +TYN 
Sbjct: 367 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL-------- 177
           ++ G C QG VD A ELF  +     +PN +TYT+++ G C+A   + A  L        
Sbjct: 427 LVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD 483

Query: 178 -------------------FIE--------MMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
                              F+E        MM+ G  PN++TFN ++D + K+   +EA 
Sbjct: 484 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEAL 543

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  ++  GV  D  TY++++D      R   A ++  +++ MG
Sbjct: 544 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 588



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++  +L  L   +  D    L   +       +  T ++L++ FC+ G V   
Sbjct: 448 PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEA 507

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             ++ +++                 C P+ IT+NT++DG+ K    ++A EL   +  K 
Sbjct: 508 MELVNQMME--------------HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V  + +TY+SV+      +   EA ++   + D G++P V  +N I+  LCK  + D+A 
Sbjct: 554 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 613

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                M+ +G  P+  TY  L++G    G +  A+ +   + + G
Sbjct: 614 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKG 658



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%)

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +R     +D  EA RL      +G  P+V     ++  LC+ G+  +A+ +L      G 
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             D F YNTL+ G+C  GR++ A+ L  SM
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASM 135



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ + + M+  H   P + +FN +L  + K+ + +  L L   L S G+  D  T+S 
Sbjct: 505 EEAMELVNQMME-HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSS 563

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++   +  R      +L  +      P V                YN I+  LCK+   
Sbjct: 564 VVDVLSREDRTEEAIQMLHAVQDMGMRPKVG--------------MYNKILFALCKRCET 609

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           D+A + F  M      PN  TY  +I G  +     EA+ +  E+  +GV
Sbjct: 610 DQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 659


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 24/250 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M++     P   ++N ++    +    D  ++L +R+  TG  PD+ T++ L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +N FCK+ R+   + +L ++ R   TPDVVTFTSL+                     K C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P   TYNTI+DG C+   +++A++  L+  D    PNVV++  +IRG C  N  +EA  
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGF 235
           L  E   +   P+VV +  ++D LC+  K+DEA  +   M++  G  P++ TY+TL+ G 
Sbjct: 381 LVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGL 440

Query: 236 CLTGRVNHAK 245
           C  G ++ A+
Sbjct: 441 CNAGMLDRAR 450



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++    K+K  D  L +F++L + G  PD+ T+S LI+  CK GR+     +
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDL 207

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            GR+++S               C P+ +TYN++I G C+ G +D+A  L  +M +    P
Sbjct: 208 FGRMIKS-------------GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYT+++ GFC     ++A  L  +M  +G+ P+VVTF  +MD LC+  ++ +A  +L
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M +    P  +TYNT+LDG+C   ++  A++    +E M C
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDC 355



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++  L K K  +  L    ++ S G  PD+YT++ +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 98  LRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVD 137
                TP+VVT+T LI                    K C P A+TYN++I GLCK     
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M      P++ TYT++I GFC +   ++A R+F +++ +G +P+VVT++ ++
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 198 DELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK G++ EA  L   MI+ G   P+  TYN+L+ GFC  G+++ A  L   M   G
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L             + + +  L P++ T+++LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++ + C  P  VT+ SLI  +CK                    PD  TY T+I G CK
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVV 191
               D A  +F ++  +  +P+VVTY+ +I G C      EA  LF  M+  G   PN V
Sbjct: 163 SKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV 222

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++   C+ GKMDEA +LL+ M + G  PD  TY TL++GFC   R++ A +L   M
Sbjct: 223 TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM 282

Query: 252 ESMG 255
              G
Sbjct: 283 TRKG 286



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 139/263 (52%), Gaps = 26/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHS 75
           ++AL +F+ ++      P V +++ ++  L K       + LF R+  +G   P+  T++
Sbjct: 167 DDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 225

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI+ FC+MG++     +L R+  +  +PDVVT+T+L+   CK                 
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD +T+ +++DGLC++  +  A  +  +M+ K+  P V TY +++ G+C AN   EA
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEA 345

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++  +E MD    PNVV+FN+++  LCK  +  EA  L++   +    PD   Y T++DG
Sbjct: 346 RKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403

Query: 235 FCLTGRVNHAKELFVSM-ESMGC 256
            C   +V+ A  ++  M E  GC
Sbjct: 404 LCREKKVDEACRVYRKMLEEPGC 426



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 22/207 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------ 116
           D  T++ LI   CK+ R+    + LG+++   F PDV T+T++I  +C            
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 117 --------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                    P+ +TY  +IDGLCK G VD+A  L  KM+ K V P  VTY S+I G C A
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKA 128

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              +EA  L  EM+  G  P++ T+  ++   CK+ K D+A  + + ++  G RPD  TY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           + L+DG C  GR+  A +LF  M   G
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  D +TY ++I GLCK   +++A     KM  K   P+V TYT+VI   C  N  +EA+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +   EM ++ + PNVVT+ V++D LCK G++DEA +LL  M +  V P A TYN+L+ G 
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   R + A +L   M   GC
Sbjct: 126 CKAERASEAYDLLEEMVYSGC 146



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 52/255 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M     SP  V+   +M G   K    D    L  ++   GL PD+ T + 
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNG-FCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------CK 117
           L++  C+  R+S    +LG + R   +P V T+ +++                     C 
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +++N +I GLCK     +A EL  + + +   P+VV YT+VI G C     +EA R+
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416

Query: 178 FIEMMDQ--------------------------------GVQPNVVTFNVIMDELCKNGK 205
           + +M+++                                G  PN+ T+N+++D   K  +
Sbjct: 417 YRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANR 476

Query: 206 MDEASSLLDLMIQHG 220
            ++A  LLD M+Q G
Sbjct: 477 DEDARELLDDMVQRG 491


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 133/241 (55%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+S+NI++  + +    +    L   +   G  PD+ ++S +IN +C+ G +   + ++ 
Sbjct: 669 VASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIE 728

Query: 96  RILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCKQG 134
           ++ +    P+  T+ S+I    ++CK                 PD I Y T++DG CK+G
Sbjct: 729 KMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRG 788

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A + F +M  +++ P+V+TYT++I GFC   D  EA +LF EM+ +G++P+++TF 
Sbjct: 789 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFT 848

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +M+  CK G + +A  + + MIQ G  P+  TY TL+DG C  G ++ A EL   M  +
Sbjct: 849 ELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 908

Query: 255 G 255
           G
Sbjct: 909 G 909



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 21/219 (9%)

Query: 58   LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-- 115
             F  ++S  + PD+ T++ +I+ FC++G +     +   +L     PD++TFT L+    
Sbjct: 796  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYC 855

Query: 116  -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                               C P+ +TY T+IDGLCK+G +D A EL  +M    ++PN+ 
Sbjct: 856  KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915

Query: 157  TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            TY S++ G C + +  EA +L  E    G+  + VT+  +MD  CK+G+MD+A  +L  M
Sbjct: 916  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEM 975

Query: 217  IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  G++P   T+N L++GFCL G +   ++L   M + G
Sbjct: 976  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 126/219 (57%), Gaps = 21/219 (9%)

Query: 58   LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
            LF  +   GL PD+ T + L+N +CK G +   F V   ++++  +P+VVT+T+LI  +C
Sbjct: 831  LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890

Query: 117  K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
            K                    P+  TYN+I++GLCK G +++A +L  + +   +  + V
Sbjct: 891  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 950

Query: 157  TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            TYT+++  +C + + ++A+ +  EM+ +G+QP +VTFNV+M+  C +G +++   LL+ M
Sbjct: 951  TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1010

Query: 217  IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  G+ P+A T+N L+  +C+   +  A  ++  M S G
Sbjct: 1011 LAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRG 1049



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-KHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F+ ML  +     V S N+ L  L+K+     T + +F+     G+  ++ +++I
Sbjct: 616 EARKVFEKMLN-YGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNI 674

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  C++GR++    +L  +    +TPDV++++++I                     K 
Sbjct: 675 VIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG 734

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP++ TY +II  LC+   + +A+E F +M  + + P+ + YT+++ GFC   D   A 
Sbjct: 735 LKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAAS 794

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM  + + P+V+T+  I+   C+ G M EA  L   M+  G+ PD  T+  L++G+
Sbjct: 795 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGY 854

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G +  A  +   M   GC
Sbjct: 855 CKAGHIKDAFRVHNHMIQAGC 875



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A  + ++M++   SP  V ++  ++  L K    D+   L   +   GL P+++T++ +
Sbjct: 862  DAFRVHNHMIQAGCSPN-VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 920

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            +N  CK G +     ++G    +    D VT+T              T++D  CK G +D
Sbjct: 921  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT--------------TLMDAYCKSGEMD 966

Query: 138  KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            KA+E+  +M  K ++P +VT+  ++ GFC      + ++L   M+ +G+ PN  TFN ++
Sbjct: 967  KAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLV 1026

Query: 198  DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + C    +  A+++   M   GV PD  TY  L+ G C    +  A  LF  M+  G
Sbjct: 1027 KQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKG 1084



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 21/221 (9%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P + ++N ++  L K+ + +  + L     + GL  D  T++ L++ +CK G +     +
Sbjct: 912  PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 971

Query: 94   LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
            L  +L     P +VTF  L+                     K   P+A T+N ++   C 
Sbjct: 972  LTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCI 1031

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            +  +  A  ++  M  + V+P+  TY ++++G C A +  EA  LF EM  +G   +V T
Sbjct: 1032 RNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST 1091

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            ++V++    K  K  EA  + D M + G+  D   ++   D
Sbjct: 1092 YSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSD 1132



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++  ++    K+   D    +   +   GL P + T ++L+N FC  G +  G  +L  +
Sbjct: 951  TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1010

Query: 98   LRSCFTPDVVTFTSLIK-----------------VC----KPDAITYNTIIDGLCKQGFV 136
            L     P+  TF  L+K                 +C    +PD  TY  ++ G C    +
Sbjct: 1011 LAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNM 1070

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             +A  LF +MK K    +V TY+ +I+GF     + EA+ +F +M   G+  +   F+  
Sbjct: 1071 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFF 1130

Query: 197  MDELCKNGKMDEASSLLDLMIQH 219
             D   K  + D     +D +I++
Sbjct: 1131 SDTKYKGKRPDTIVDPIDEIIEN 1153


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V  FNI++    K         +F  ++  GL P + + + LI+ +C+   V  GFV
Sbjct: 223 PPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFV 282

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +     +PDV T+++LI  +CK                    P+ +T+ T+IDG C
Sbjct: 283 LKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQC 342

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A   F  MKD+ ++P+++TY ++I G C   D  EA++L  EM+  G +P+ +
Sbjct: 343 KHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKI 402

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF  +MD  CK+G MD A  + D M++ G+  D   +  L+ G C  GRV  A+ +   M
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 252 ESMG 255
            S G
Sbjct: 463 LSAG 466



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 119/211 (56%), Gaps = 21/211 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           G  P++Y  +IL++ FCK+G V +  +V   I R    P VV+F +LI   C+       
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 118 -------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        PD  TY+ +I+GLCK+  V++A  LF +M +  + PN VT+T++I G
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            C     + A R F  M D+G++P+++T+N +++ LC++G + EA  LL+ MI +G +PD
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             T+ TL+DG C  G ++ A E+   M   G
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEG 431



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    ++K+ +    L   + S  + PD++T+S LIN  CK  RV     +
Sbjct: 259 PSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGL 318

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ VTFT+LI                     +  +PD ITYN +I+GLC+
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCR 378

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A++L  +M     KP+ +T+T+++ G C   D + A  +   M+++G++ + V 
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVA 438

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++  LC++G++ +A  +L  M+  G +PD  TY  ++D FC  G V    +L   M+
Sbjct: 439 FTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQ 498

Query: 253 SMG 255
             G
Sbjct: 499 RDG 501



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 114/243 (46%), Gaps = 22/243 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M   P  V+ F  ++    K+   D  L  F+ +   G+ PDL T++ L
Sbjct: 314 EANGLFDEMCEMGLVPNGVT-FTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNAL 372

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--------------------- 116
           IN  C+ G +     +L  ++ + F PD +TFT+L+  C                     
Sbjct: 373 INGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGI 432

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + +  +I GLC+ G V  A+ +   M     KP+  TYT VI  FC   D     +
Sbjct: 433 ELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAK 492

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM   G  P VVT+N +M+  CK G+M  A  LL  M+   V P+  T+N LLDG C
Sbjct: 493 LLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHC 552

Query: 237 LTG 239
             G
Sbjct: 553 KHG 555



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E +L++ D    PNV  +  ++ GFC   D   A+ +F E+  +G++P+VV+FN ++   
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C++  ++E   L  +M    + PD FTY+ L++G C   RV  A  LF  M  MG
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 24/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++        +  V+ + +++++ GL PD YT+  L+N  C +  + H F+ 
Sbjct: 240 PNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEM-HSFLD 298

Query: 94  LGRILRSCFTPDVVTFT---SLIKVC------------------KPDAITYNTIIDGLCK 132
           L  ++ +  +PD   F    S    C                   P+ + Y  +ID LCK
Sbjct: 299 L--MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 356

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A+  F +M ++ V PN+V + S++ G C  + W  A+ L  EM+DQG+ PN V 
Sbjct: 357 LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVF 416

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++  LC  G++ E   L+DLM   GVRPDAF+Y  L+ G+CL GR + A+++F  M 
Sbjct: 417 FNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMV 476

Query: 253 SMG 255
           S+G
Sbjct: 477 SIG 479



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI     AK    D  + +F ++   GL P++  +  LI+  CK+GRV    V 
Sbjct: 307 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 366

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
             +++    TP++V F SL+                       +C P+A+ +NT+I  LC
Sbjct: 367 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC-PNAVFFNTLICNLC 425

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G V + + L   M+   V+P+  +YT +I G+C A   +EA+++F  M+  G+ P  V
Sbjct: 426 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEV 485

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++   C   ++D+A  L   M++ GV P   TYNT+L G   T R + AKEL+++M
Sbjct: 486 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 545

Query: 252 ESMG 255
            + G
Sbjct: 546 INSG 549



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 78/313 (24%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-----------VLSLFKRLN-- 63
           ++AL +FD +L +H  P  V +FN +L  +++                 V+SLF R+   
Sbjct: 31  DDALKLFDELL-IHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRE 89

Query: 64  -STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF-------------------- 102
            S  + P+  T+SILI C C+MGR+ H F   G IL++ +                    
Sbjct: 90  CSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRV 149

Query: 103 ----------------TPDVVTFTSLIK------------------------VCKPDAIT 122
                           TPD V+++ L+K                         C P+ +T
Sbjct: 150 GEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVT 209

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y T+IDGLCK    D+A+ +F +M D  VKPN  TY  +I G+     W E  ++  +M 
Sbjct: 210 YTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMS 269

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G++P+  T+  +++ LC    + E  S LDLM+++G+ PD   +N     +   G ++
Sbjct: 270 ARGLKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 326

Query: 243 HAKELFVSMESMG 255
            A ++F  M   G
Sbjct: 327 KAMDIFNKMRQHG 339



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 17/239 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           E   + D M  +   P   S   ++ G CLA     D    +F  + S GL P   T++ 
Sbjct: 432 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRT--DEAEKVFDGMVSIGLSPTEVTYNT 489

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +C   R+   + +   +LR   TP VVT              YNTI+ GL +    
Sbjct: 490 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVT--------------YNTILHGLFQTKRF 535

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKEL+L M +   K ++ TY  ++ G C +N  +EA ++F  +  +G+Q N++TF ++
Sbjct: 536 SEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIM 595

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L K G+ ++A  L   +  +G+ P+  TY  + +     G +     LF +ME  G
Sbjct: 596 IGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNG 654



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ++  L     ++    L   +   G+ P+    + LI   C +GRV  G  +
Sbjct: 377 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRL 436

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIIDGLCK 132
           +  +      PD  ++T LI             KV          P  +TYNT++ G C 
Sbjct: 437 IDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCS 496

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A  LF +M  K V P VVTY +++ G      ++EAK L++ M++ G + ++ T
Sbjct: 497 ASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYT 556

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I++ LCK+  +DEA  +   +   G++ +  T+  ++      GR   A +LF ++ 
Sbjct: 557 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 616

Query: 253 SMG 255
           + G
Sbjct: 617 ANG 619



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A C+F  MLR   +P  V ++N +L  L + K +     L+  + ++G   D+YT++I
Sbjct: 501 DDAYCLFREMLRKGVTPG-VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNI 559

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CK   V   F +   +       +++TFT               +I  L K G  
Sbjct: 560 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT--------------IMIGALLKGGRK 605

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A +LF  +    + PNVVTY  V           E   LF  M   G  PN    N +
Sbjct: 606 EDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 665

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +  L   G +  A + L  + +     +A T + L+  F      +HAK L
Sbjct: 666 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSL 716


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSI 76
           +AL  FD  L +  + P V S+  ++  L K    D    LF+++  + G  P+ +T++ 
Sbjct: 28  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 87

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK  R+     V+    +  F PDVVT              YNT++  L + G V
Sbjct: 88  LVDGLCKQDRLDAARAVIAEARKRDFAPDVVT--------------YNTLMAALFQLGRV 133

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A   F +M ++   P +V++ ++I G C A    +A  +F EM+D+   PN+VT++V+
Sbjct: 134 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 193

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK+ ++DEA  LLD M+  G RPD   Y  L+ GF   GR++ A  L   M S GC
Sbjct: 194 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 253



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F  M+      P   ++N ++  L K    D   ++          PD+ T++ 
Sbjct: 63  DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L+    ++GRV        ++    + P +V+F ++I  +C+                  
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 182

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY+ +IDGLCK   +D+A++L  +M  +  +P++V YT ++ GF  A   + A 
Sbjct: 183 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 242

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M+ QG  P+VVT+ V++D+LCK G++D+A  +   ++ +   P+  TY+ L+ G+
Sbjct: 243 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGY 302

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   RV+   ++   M  M C
Sbjct: 303 CRASRVDEGGKV---MREMAC 320



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 25/236 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL  F  M       P + SFN ++  L + +     L +F  +      P+L T+S+
Sbjct: 134 DEALATFTQMTE-EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSV 192

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  CK  ++     +L R++     PD+V +T L+                     + 
Sbjct: 193 VIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG 252

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY  +ID LCK G VD A E+F ++      PNVVTY+++I G+C A+  +E  
Sbjct: 253 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG 312

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++  EM     +PNVVT+N ++  L    + +EA  +   M + G  PDA TY  L
Sbjct: 313 KVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 19/167 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M+     P  V+   ++LG  A  +  D+ L L +R+ S G  PD+ T+++
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR-LDSALGLLRRMVSQGCIPDVVTYTV 262

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCKP 118
           +I+  CK+GRV     +   ++ +  +P+VVT+++LI                    C+P
Sbjct: 263 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRP 322

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           + +TYNT+I GL      ++A  +F +M +    P+  TY  + R  
Sbjct: 323 NVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLD--LMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +G+Q N  T ++I+  LC+ G++ +A    D  L + H  +PD  +Y TL++G C  GRV
Sbjct: 4   EGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHA-QPDVVSYTTLINGLCKLGRV 62

Query: 242 NHAKELFVSMESMG 255
           + A +LF  M + G
Sbjct: 63  DAAFDLFRKMVAAG 76


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++    K+K  D  L +F++L + G  PD+ T+S LI+  CK GR+     +
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDL 207

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            GR+++S               C P+ +TYN++I G C+ G +D+A  L  +M +    P
Sbjct: 208 FGRMIKS-------------GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTYT+++ GFC     ++A  L  +M  +G+ P+VVTF  +MD LC+  ++ +A  +L
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M +    P  +TYNT+LDG+C   ++  A++    +E M C
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDC 355



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 24/250 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M++     P   ++N ++    +    D  ++L +R+  TG  PD+ T++ L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +N FCK+ R+   + +L ++ R   TPDVVTFTSL+                     K C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P   TYNTI+DG C+   +++A++  L+  D    PNVV++  +IRG C  N  +EA  
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGF 235
           L  E   +   P+VV +  ++D LC+  K+DEA  +   M++  G  P++ TY+TL+ G 
Sbjct: 381 LVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGL 440

Query: 236 CLTGRVNHAK 245
           C  G ++ A+
Sbjct: 441 CNAGMLDRAR 450



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++  L K K  +  L    ++ S G  PD+YT++ +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 98  LRSCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVD 137
                TP+VVT+T LI                    K C P A+TYN++I GLCK     
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M      P++ TYT++I GFC +   ++A R+F +++ +G +P+VVT++ ++
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 198 DELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK G++ EA  L   MI+ G   P+  TYN+L+ GFC  G+++ A  L   M   G
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L             + + +  L P++ T+++LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++ + C  P  VT+ SLI  +CK                    PD  TY T+I G CK
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVV 191
               D A  +F ++  +  +P+VVTY+ +I G C      EA  LF  M+  G   PN V
Sbjct: 163 SKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV 222

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++   C+ GKMDEA +LL+ M + G  PD  TY TL++GFC   R++ A +L   M
Sbjct: 223 TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM 282

Query: 252 ESMG 255
              G
Sbjct: 283 TRKG 286



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 139/263 (52%), Gaps = 26/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHS 75
           ++AL +F+ ++      P V +++ ++  L K       + LF R+  +G   P+  T++
Sbjct: 167 DDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 225

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI+ FC+MG++     +L R+  +  +PDVVT+T+L+   CK                 
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD +T+ +++DGLC++  +  A  +  +M+ K+  P V TY +++ G+C AN   EA
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEA 345

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++  +E MD    PNVV+FN+++  LCK  +  EA  L++   +    PD   Y T++DG
Sbjct: 346 RKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403

Query: 235 FCLTGRVNHAKELFVSM-ESMGC 256
            C   +V+ A  ++  M E  GC
Sbjct: 404 LCREKKVDEACRVYRKMLEEPGC 426



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 22/207 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------ 116
           D  T++ LI   CK+ R+    + LG+++   F PDV T+T++I  +C            
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 117 --------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                    P+ +TY  +IDGLCK G VD+A  L  KM+ K V P  VTY S+I G C A
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKA 128

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              +EA  L  EM+  G  P++ T+  ++   CK+ K D+A  + + ++  G RPD  TY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           + L+DG C  GR+  A +LF  M   G
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  D +TY ++I GLCK   +++A     KM  K   P+V TYT+VI   C  N  +EA+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +   EM ++ + PNVVT+ V++D LCK G++DEA +LL  M +  V P A TYN+L+ G 
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   R + A +L   M   GC
Sbjct: 126 CKAERASEAYDLLEEMVYSGC 146



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 52/255 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M     SP  V+   +M G   K    D    L  ++   GL PD+ T + 
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNG-FCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------CK 117
           L++  C+  R+S    +LG + R   +P V T+ +++                     C 
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +++N +I GLCK     +A EL  + + +   P+VV YT+VI G C     +EA R+
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416

Query: 178 FIEMMDQ--------------------------------GVQPNVVTFNVIMDELCKNGK 205
           + +M+++                                G  PN+ T+N+++D   K  +
Sbjct: 417 YRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANR 476

Query: 206 MDEASSLLDLMIQHG 220
            ++A  LLD M+Q G
Sbjct: 477 DEDARELLDDMVQRG 491


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 15/237 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+ +F   L     P  V  +N ++  L++       L L   +   G  P+++T++
Sbjct: 346 PDRAMAVFKDGLGKGLRPSIVL-YNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYN 404

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ++IN  CKMG VS           S    D +      K C PD  TYNT+IDG CKQ  
Sbjct: 405 LVINGLCKMGCVSDA---------SHLVDDAIA-----KGCPPDIFTYNTLIDGYCKQLK 450

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A E+  +M  + + P+V+TY +++ G C A    E   +F  M ++G  PN++T+N+
Sbjct: 451 LDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNI 510

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           I+D LCK  K++EA  LL  M   G++PD  ++ TL  GFC  G ++ A +LF  ME
Sbjct: 511 IVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRME 567



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 30/253 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVL---------SLFKRLNSTGLFPDLYTHSILINCFCKM 84
           P + +FNI +  L +    D  +            +++ + G  PD  T++ +I+ +CK 
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITY 123
           G V     VL   +   F PD  T+ SLI                     K  +P  + Y
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT+I GL +QG +  A +L  +M +    PN+ TY  VI G C     ++A  L  + + 
Sbjct: 369 NTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIA 428

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G  P++ T+N ++D  CK  K+D A+ +++ M   G+ PD  TYNTLL+G C  G+   
Sbjct: 429 KGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEE 488

Query: 244 AKELFVSMESMGC 256
             E+F +ME  GC
Sbjct: 489 VMEIFKAMEEKGC 501



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++N ++    K    D+   +  R+ S G+ PD+ T++ L+N  CK G+      
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVME 491

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +                K C P+ ITYN I+D LCK   V++A +L  +MK K +K
Sbjct: 492 IFKAMEE--------------KGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLK 537

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASS 211
           P+VV++ ++  GFC   D + A +LF  M  Q  V     T+N+I+    +   M+ A  
Sbjct: 538 PDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMK 597

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA-KELFVSME 252
           L  +M   G  PD +TY  ++DGFC  G +    K L  +ME
Sbjct: 598 LFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENME 639



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 31/262 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+  F+ M   +   P V S N ++  L +  +++    ++ R+   G+  D+YT++I
Sbjct: 93  QEAVDTFERM-DFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTI 151

Query: 77  LINCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
            I  FCK  R                    V++  VV G             F  ++  C
Sbjct: 152 RIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARC 211

Query: 117 K-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN--- 172
             PD + +N ++  LCK+G V +++ L  K+  + V PN+ T+   ++G C     +   
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAV 271

Query: 173 ------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 EA+    +M++ G +P+ +T+N I+D  CK G + +A+ +L   +  G +PD F
Sbjct: 272 RNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEF 331

Query: 227 TYNTLLDGFCLTGRVNHAKELF 248
           TY +L++GFC  G  + A  +F
Sbjct: 332 TYCSLINGFCKDGDPDRAMAVF 353



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 26/224 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L K    + V+ +FK +   G  P++ T++I+++  CK  +V+    +
Sbjct: 468 PDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDL 527

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------------KVCKPDAITYNTIIDGL 130
           LG +      PDVV+F +L                         VC   A TYN I+   
Sbjct: 528 LGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTA-TYNIIVSAF 586

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            +Q  ++ A +LF  MK+    P+  TY  VI GFC   +  +  +  +E M++   P++
Sbjct: 587 SEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSL 646

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            TF  +++ LC   K+ EA  ++ LM+Q G+ P+  T NT+ + 
Sbjct: 647 TTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE--TVNTIFEA 688



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G V +A + F +M   N  P+V ++ +++         N+A ++++ M D+GVQ +V 
Sbjct: 88  RKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVY 147

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ + +   CK  +   A  LL  M + G   +A  Y T++ G   +G  +HA+ELF  M
Sbjct: 148 TYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEM 207



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEA 174
           K  A TY  I+  L   G  ++ ++L  +M++ NV   ++   Y   ++ +       EA
Sbjct: 37  KHTASTYKCIVQKLGHHGEFEEMEKLLSEMRE-NVNNALLEGAYIEAMKNYGRKGKVQEA 95

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F  M      P+V + N IM+ L + G  ++A  +   M   GV+ D +TY   +  
Sbjct: 96  VDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKS 155

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC T R   A  L  +M  +GC
Sbjct: 156 FCKTARPYAALRLLRNMPELGC 177



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +F  M + +      +++NI++   ++  + +  + LF  + ++G  PD YT+ ++I
Sbjct: 559 AYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVI 618

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNT-IIDGLCKQGFV 136
           + FCKMG ++ G+  L   +   F P + TF  ++  +C  D +     II  + ++G V
Sbjct: 619 DGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIV 678


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 22/254 (8%)

Query: 2   RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR 61
           RL  S +G +       AL  F  M+    SP  V ++N+++GCLA+    +   SLF+ 
Sbjct: 225 RLSKSSKGGL-------ALSFFKDMVVAGLSPS-VFTYNMVIGCLAREGDLEAARSLFEE 276

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           + + GL PD+ T++ LI+ + K+G ++    V   +  +               C+PD I
Sbjct: 277 MKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAG--------------CEPDVI 322

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN++I+  CK   + +A E    MK + ++PNVVTY+++I  FC A    EA + F++M
Sbjct: 323 TYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDM 382

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +  G+QPN  T+  ++D  CK G ++EA  L   M Q GV  +  TY  LLDG C  GR+
Sbjct: 383 IRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRM 442

Query: 242 NHAKELFVSMESMG 255
             A+ELF ++   G
Sbjct: 443 REAEELFGALLKAG 456



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 21/229 (9%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K K  +  + + + +N   L PDL  +   I   C+   +     V+  ++    T +  
Sbjct: 473 KAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSY 532

Query: 108 TFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            +T+LI                        K   +TY  +IDGLCK G V +A   F  M
Sbjct: 533 IYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM 592

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
               ++PN++ YT++I G C  +   EAK LF EM+D+G+ P+ + +  ++D   K+G  
Sbjct: 593 TRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNP 652

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            EA SL + M++ G+  D   Y +L+ GF   G+V  AK L   M   G
Sbjct: 653 GEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKG 701



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 127/305 (41%), Gaps = 59/305 (19%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
           G G +  +T   A+ +F+ M +     P V ++N ++ C  K +           +   G
Sbjct: 295 GYGKVGMLTG--AVSVFEEM-KDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRG 351

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP------- 118
           L P++ T+S LI+ FCK G +         ++R    P+  T+TSLI   CK        
Sbjct: 352 LQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAF 411

Query: 119 -------------DAITYNTIIDGLCKQGFVDKAKELF---------------------- 143
                        + +TY  ++DGLC+ G + +A+ELF                      
Sbjct: 412 KLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGY 471

Query: 144 -------------LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
                         +M  KN+KP+++ Y + I G C  N+  ++  +  EMMD G+  N 
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANS 531

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
             +  ++D   K GK  EA +LL  M   G++    TY  L+DG C  G V  A   F  
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 251 MESMG 255
           M   G
Sbjct: 592 MTRNG 596



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           +++LGR    C   D++  T    VC+P    ++T+ + L   G +++A++ F KM    
Sbjct: 154 WILLGREFPGCDFFDMLWSTR--NVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFR 211

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P V +   ++     ++    A   F +M+  G+ P+V T+N+++  L + G ++ A 
Sbjct: 212 VLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAAR 271

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           SL + M   G+RPD  TYN+L+DG+   G +  A  +F  M+  GC
Sbjct: 272 SLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGC 317



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 14/201 (6%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            ++L + +   G+   + T+ +LI+  CK+G V         + R+   P+++ +T+LI 
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALI- 608

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                        DGLCK   +++AK LF +M DK + P+ + YTS+I G     +  EA
Sbjct: 609 -------------DGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEA 655

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L   M++ G++ ++  +  ++    + G++  A SLLD M++ G+ PD      LL  
Sbjct: 656 LSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRK 715

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +   G +N A  L   M   G
Sbjct: 716 YYELGDINEALALHDDMARRG 736


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 137/294 (46%), Gaps = 57/294 (19%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  +  M+ M P P  V  FN++   +AK KHY T +SL K ++  G+ P ++T +I+I
Sbjct: 67  ALDFYHKMVTMKPFPC-VKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVI 125

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------ 114
           NC C++     GF VLG + +    P +VTF +++                         
Sbjct: 126 NCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYE 185

Query: 115 ------------VCK----PDAITY----------------NTIIDGLCKQGFVDKAKEL 142
                       +CK      A++Y                + ++DGLCK G V +A  L
Sbjct: 186 SDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNL 245

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F +M  K ++P++ TY  +I G C  + W EA  L   MM +G+ P+V TFNVI     K
Sbjct: 246 FSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFK 305

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            G +  A S+   M+  G+  D  TY +++   C+  ++  A E+F  M S GC
Sbjct: 306 TGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGC 359



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN++ G   K        S+F  +   G+  D+ T++ +I   C + ++     V
Sbjct: 291 PDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEV 350

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P++VT+TSLI   C+                    P+ +T++T+I G+CK
Sbjct: 351 FDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCK 410

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    AKELFL M      PN+ T   ++ G    N  +EA  LF E+       N++ 
Sbjct: 411 AGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIII 470

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+D +C +GK+++A  L   +   GV+ D  TYN ++ G C  G ++ A++L + ME
Sbjct: 471 YNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKME 530

Query: 253 SMGC 256
             GC
Sbjct: 531 ENGC 534



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++  L    +    +     L   G   D YT   + N  CK+G  S     
Sbjct: 151 PSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSY 210

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC- 131
           L ++       DV  ++ ++                     K  +PD  TYN +I GLC 
Sbjct: 211 LKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCN 270

Query: 132 ----------------------------------KQGFVDKAKELFLKMKDKNVKPNVVT 157
                                             K G + +AK +F  M    ++ +VVT
Sbjct: 271 FDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVT 330

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YTS+I   C  N   +A  +F  M+ +G  PN+VT+  ++   C+   M++A   L  M+
Sbjct: 331 YTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMV 390

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +G+ P+  T++TL+ G C  G+   AKELF+ M   G
Sbjct: 391 NNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHG 428



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  IF +M+ M      V+  +I+      N+  D  + +F  + S G  P++ T++ 
Sbjct: 310 SRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDA-MEVFDLMISKGCLPNIVTYTS 368

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +C+   ++     LG ++ +   P+VVT+++LI  VCK                  
Sbjct: 369 LIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHG 428

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  T   I+DGL K  F  +A  LF +++  N   N++ Y  ++ G C +   N+A 
Sbjct: 429 QLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDAL 488

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +  +GV+ +VVT+N+++  LCK G +D+A  LL  M ++G  P+  TYN  + G 
Sbjct: 489 ELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGL 548

Query: 236 CLTGRVNHAKELFVSMESMG 255
               +++ + +  + M+  G
Sbjct: 549 LRRYQISKSTKYLMFMKDKG 568



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 23/254 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M+     P  V+  +++ G   + K+ +  +     + + GL P++ T S L
Sbjct: 346 DAMEVFDLMISKGCLPNIVTYTSLIHG-WCETKNMNKAMYFLGEMVNNGLDPNVVTWSTL 404

Query: 78  INCFCKMGRV-----------SHG--------FVVLGRILRSCFTPDVVT-FTSLIKV-C 116
           I   CK G+             HG         ++L  + +  F  + ++ F  L K+  
Sbjct: 405 IGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNW 464

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + I YN I+DG+C  G ++ A ELF  +  K VK +VVTY  +I+G C     ++A+ 
Sbjct: 465 DLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAED 524

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L ++M + G  PN  T+NV +  L +  ++ +++  L  M   G + DA T   L++ F 
Sbjct: 525 LLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFS 584

Query: 237 LTGRVNHAKELFVS 250
              + N A E+F+ 
Sbjct: 585 -ANKENRALEVFLQ 597



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%)

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D +     VD A + + KM      P V  +  +         +  A  L   M   GV
Sbjct: 55  LDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGV 114

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +P V T N++++ LC+        S+L LM + GV P   T+NT+++G C+ G V  A  
Sbjct: 115 KPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIR 174

Query: 247 LFVSMESMG 255
               ++ MG
Sbjct: 175 FVDHLKDMG 183


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N +L  L+K    D + +++  L +  + P++YT + ++N +CK+G V    + 
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +I+++   PD  T+TSLI                     K C+ + ++Y  +I GLC+
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A +LF  M + N  P V TYT +I     +    EA  LF EM ++G +PNV T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V++D LCK  KMDEA  +L  M + G+ P   TYN L+DG+C  G ++ A E+   ME
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 253 SMGC 256
           S  C
Sbjct: 397 SNSC 400



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL +F  M   +  P  V ++ +++  L+ +      L+LF  +   G  P+++T+++
Sbjct: 281 NEALKLFADMTEDNCCPT-VRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK  ++     +L  +      P VVT+ +LI                       
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN +I GLCK+  V KA  L  KM ++ + P+++TY S+I G C  ND   A 
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M + G+ P+  T++V +D LCK G+++EA +L D +   GV+ +   Y  L+DG+
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+++ A  L   M +  C
Sbjct: 520 CKVGKIDVAYSLLERMLNDAC 540



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +   + S    P+  T++ LI   CK  +V     +
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L    +P ++T+ SLI   CK                    PD  TY+  ID LCK
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V++A  LF  +K K VK N V YT++I G+C     + A  L   M++    PN  T
Sbjct: 487 EGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYT 546

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV+++ LCK  KM EASSL+  M+  GV+P   TY  L+      G  +HA ++F  M 
Sbjct: 547 YNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV 606

Query: 253 SMG 255
           S+G
Sbjct: 607 SLG 609



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + + ML    SP  ++ +N ++    K    ++   L   +N  GL PD +T+S+
Sbjct: 421 HKAMALLNKMLERKLSPSLIT-YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
            I+  CK GRV     +   +       + V +T+LI                       
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P++ TYN +I+GLCK+  + +A  L  KM    VKP VVTYT +I        ++ A 
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M+  G QP+V T+   +      G ++E   ++  M + G+ PD  TY  L+DG+
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G  + A +    M   GC
Sbjct: 660 ARLGLTHRAFDFLKCMVDTGC 680



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 16/254 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +F++M+ +    P V ++   L         + V  +  ++N  G+ PDL T+++
Sbjct: 596 DHALKVFNHMVSL-GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI----IDGLCK 132
           LI+ + ++G     F  L  ++ +   P +   + LIK    +     T     ID +  
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 133 QGFVDKAK-----------ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
              VD A            +LF KM +     +V  Y ++I GFC      EA+ L   M
Sbjct: 715 VNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 774

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            ++G+ P+   +N ++D  CK G   EA  L+D M+++G+ P   +Y  L+ G  + G  
Sbjct: 775 KERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSN 834

Query: 242 NHAKELFVSMESMG 255
             AK +F  + S G
Sbjct: 835 EKAKAVFHGLLSCG 848



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 75/140 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP    YNTI+  L K   +D+ K ++L++ +  + PN+ T+ +++ G+C   +  EA+ 
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              +++  G+ P+  T+  ++   C+N  +D A  +  +M Q G + +  +Y  L+ G C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR+N A +LF  M    C
Sbjct: 276 EAGRINEALKLFADMTEDNC 295



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 22/172 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M+  H     VS +  ++    + +  +    L   +   G+ P    ++ L+
Sbjct: 732 ALKLFEKMVE-HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 790

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------KVCKP----------- 118
           +C CK+G  +    ++  ++ +   P + ++  L+         +  K            
Sbjct: 791 DCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYN 850

Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
            D + +  +IDGL K+  VD+  EL   M++K+         + +     AN
Sbjct: 851 YDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAAN 902


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 140/254 (55%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD ML    SP  ++   ++ G     K  +   +LF  + S GL PD  T++ LI+ +C
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ-NLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------------- 121
           K G + + F +   +++   TP++VT+ +LI  +CK   +                    
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN++++G+CK G +++A +L  +M+   + P+ +TYT+VI  +C   D ++A +L  EM
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM 564

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D+G+QP VVTFNV+M+  C  G +++   LL  M++ G+ PDA TYNTL+   C+   +
Sbjct: 565 LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSM 624

Query: 242 NHAKELFVSMESMG 255
           N   +++  M + G
Sbjct: 625 NTTTKIYKRMRNQG 638



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V S++ ++            L L   +   GL P+ YT++ +I   CK+G+     
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA- 347

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               ++LR   +  ++          PD + Y T+I G  K G V  A + F +M  K +
Sbjct: 348 ---EKVLREMMSQKII----------PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKI 394

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+ +TYT++I+GF       E + LF EM+ +G++P+ VT+  ++D  CK G+M  A S
Sbjct: 395 SPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFS 454

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L + M+Q G+ P+  TY  L+DG C  G ++ A EL   M   G
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N M+  + K  + +  + L K +   G+ PD  T++ +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P VVTF              N +++G C  G ++    L   M +K + P+ +TY
Sbjct: 566 DRGLQPTVVTF--------------NVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++++  C  N  N   +++  M +QGV P+  T+N+++   CK   + EA  L   MI+
Sbjct: 612 NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIE 671

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G  P   +YN L+  F    +   A+ELF  M   G
Sbjct: 672 KGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHG 708



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +  +YN II  LC+ G V +A  L ++M  ++  P+VV+Y++VI G+C+  +  +A +L 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M  +G++PN  T+N I+  LCK GK  EA  +L  M+   + PD   Y TL+ GF   
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 239 GRVNHAKELFVSMES 253
           G V  A + F  M S
Sbjct: 377 GHVRTANKWFDEMLS 391



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 21/206 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++    +    D    L + +   GL P + T ++L+N FC +G +  G  +
Sbjct: 536 PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRL 595

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           LG +L     PD +T+ +L+K                        PD+ TYN +I G CK
Sbjct: 596 LGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCK 655

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L+ +M +K   P V +Y ++I+ F     + EA+ LF EM   G+  +   
Sbjct: 656 ARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEI 715

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218
           +N  +D   + G ++   +L D  I+
Sbjct: 716 YNFFVDMCYEEGDVEITLNLCDEAIE 741



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K   P+ I ++     L + G + +A++L  K+    +   VVT  S         + +E
Sbjct: 184 KYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGL---VVTVDSCNAFLSRIANNSE 240

Query: 174 AKRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              + I++  + G+  N  ++N+I+  LC+ GK+ EA  LL  M      PD  +Y+T++
Sbjct: 241 GIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVI 300

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           DG+C  G +  A +L   M+  G
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKG 323


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K    +   ++ + +   G+ PD+ T+S+L++ FCK  RV     +
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 315

Query: 94  L-GRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           L G   R C TP+VVTF S+I  +CK                    PD +T+N +I G C
Sbjct: 316 LHGMASRGC-TPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC 374

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  ++A  LF +M  KN++P+V+T+ ++I G C A     A+ +   M + GV PNVV
Sbjct: 375 KAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 434

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+NV++  LCK+G+++E    L+ M+  G  P++ TY +L+   C   R + A +L   +
Sbjct: 435 TYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKL 494

Query: 252 ESMG 255
           +S G
Sbjct: 495 KSFG 498



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 27/263 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL IF   +      P + ++N ++  L K+      + LF+ L   G  PD+ T++ LI
Sbjct: 64  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLI 123

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +  CK G +     + G +      P+VVT++ LI  +CK                    
Sbjct: 124 DSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 183

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNE 173
             P+ ITYN+ +DGLCKQ    +A EL   ++D +  V P+ VT++++I G C     +E
Sbjct: 184 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE 243

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A     +M+  G  PNVVT+N +++ LCK  KM+ A ++++ M+  GV PD  TY+ L+D
Sbjct: 244 ACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 301

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            FC   RV+ A EL   M S GC
Sbjct: 302 AFCKASRVDEALELLHGMASRGC 324



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 30/267 (11%)

Query: 19  ALCIFDYMLRMHP---------SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69
            LC  D M R H            P V ++++++    K    D  L L   + S G  P
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------- 117
           ++ T + +I+  CK  R    F +  ++      PD VTF  LI   CK           
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 118 ---------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                    PD +T+  +IDGLCK G V+ A+++   M +  V PNVVTY  ++ G C +
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKS 446

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               E      EM+  G  P  +T+  ++  LC+  + D+A  L+  +   G  PD  TY
Sbjct: 447 GRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N L+DG   +G+   A  +   M   G
Sbjct: 507 NILVDGLWKSGKTEQAITVLEEMVGKG 533



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 17/181 (9%)

Query: 74  HSILINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           ++I++   C+ G  +    +  G + R    P +VT              YNTII+GLCK
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVT--------------YNTIINGLCK 93

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +    ELF ++  +   P+VVTY ++I   C A D  EA+RL   M  +G  PNVVT
Sbjct: 94  SNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVT 153

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           ++V+++ LCK G++DEA  L+  M +    V P+  TYN+ LDG C       A EL  S
Sbjct: 154 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 251 M 251
           +
Sbjct: 214 L 214



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L K+        +  ++ +  L PD  T +ILI   CK G       +
Sbjct: 326 PNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASAL 385

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     PDV+TF +LI  +CK                    P+ +TYN ++ GLCK
Sbjct: 386 FEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCK 445

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++  E   +M      P  +TY S++   C A+  ++A +L  ++   G  P+ VT
Sbjct: 446 SGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVT 505

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N+++D L K+GK ++A ++L+ M+  G +PD+FT+     G   +G +    EL 
Sbjct: 506 YNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELL 561



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 123 YNTIIDGLCKQGFVDKAKELFL-KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           YN ++  LC+ G   +A E+F  +M    V P +VTY ++I G C +N+      LF E+
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G  P+VVT+N ++D LCK G ++EA  L   M   G  P+  TY+ L++G C  GR+
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 242 NHAKELFVSMESMGC 256
           + A+EL   M    C
Sbjct: 168 DEARELIQEMTRKSC 182



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 26/236 (11%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +++ ML      P   +FNI++    K  +++   +LF+ + +  + PD+ T   LI
Sbjct: 351 ALQVYNRML-----VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI 405

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           +  CK G+V     +L  +      P+VVT+  L+                       C 
Sbjct: 406 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCV 465

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+++TY +++  LC+    D A +L  K+K     P+ VTY  ++ G   +    +A  +
Sbjct: 466 PESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITV 525

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
             EM+ +G QP+  TF      L ++G +     LL +++  G+ PDA T +++LD
Sbjct: 526 LEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 189 NVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +V  +N+++  LC+ G+   A  +    M + GV P   TYNT+++G C +  +    EL
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 248 FVSMESMG 255
           F  +   G
Sbjct: 104 FEELVKRG 111


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 140/254 (55%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD ML    SP  ++   ++ G     K  +   +LF  + S GL PD  T++ LI+ +C
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ-NLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------------- 121
           K G + + F +   +++   TP++VT+ +LI  +CK   +                    
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN++++G+CK G +++A +L  +M+   + P+ +TYT+VI  +C   D ++A +L  EM
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEM 564

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D+G+QP VVTFNV+M+  C  G +++   LL  M++ G+ PDA TYNTL+   C+   +
Sbjct: 565 LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSM 624

Query: 242 NHAKELFVSMESMG 255
           N   +++  M + G
Sbjct: 625 NTTTKIYKRMRNQG 638



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V S++ ++            L L   +   GL P+ YT++ +I   CK+G+     
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA- 347

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               ++LR   +  ++          PD + Y T+I G  K G V  A + F +M  K +
Sbjct: 348 ---EKVLREMMSQKII----------PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKI 394

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+ +TYT++I+GF       E + LF EM+ +G++P+ VT+  ++D  CK G+M  A S
Sbjct: 395 SPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFS 454

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L + M+Q G+ P+  TY  L+DG C  G ++ A EL   M   G
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N M+  + K  + +  + L K +   G+ PD  T++ +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P VVTF              N +++G C  G ++    L   M +K + P+ +TY
Sbjct: 566 DRGLQPTVVTF--------------NVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++++  C  N  N   +++  M +QGV P+  T+N+++   CK   + EA  L   MI+
Sbjct: 612 NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIE 671

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G  P   +YN L+  F    ++  A+ELF  M   G
Sbjct: 672 KGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHG 708



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +  +YN II  LC+ G V +A  L ++M  ++  P+VV+Y++VI G+C+  +  +A +L 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M  +G++PN  T+N I+  LCK GK  EA  +L  M+   + PD   Y TL+ GF   
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 239 GRVNHAKELFVSMES 253
           G V  A + F  M S
Sbjct: 377 GHVRTANKWFDEMLS 391



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 21/206 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++    +    D    L + +   GL P + T ++L+N FC +G +  G  +
Sbjct: 536 PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRL 595

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           LG +L     PD +T+ +L+K                        PD+ TYN +I G CK
Sbjct: 596 LGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCK 655

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L+ +M +K   P V +Y ++I+ F       EA+ LF EM   G+  +   
Sbjct: 656 ARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEI 715

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218
           +N  +D   + G ++   +L D  I+
Sbjct: 716 YNFFVDMCYEEGDVEITLNLCDEAIE 741



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K   P+ I ++     L + G + +A++L  K+    +   VVT  S         + +E
Sbjct: 184 KYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGL---VVTVDSCNAFLSRIANNSE 240

Query: 174 AKRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              + I++  + G+  N  ++N+I+  LC+ GK+ EA  LL  M      PD  +Y+T++
Sbjct: 241 GIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVI 300

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           DG+C  G +  A +L   M+  G
Sbjct: 301 DGYCHLGELKKALKLMDDMQIKG 323


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V S+N ++    + K  +  L L   +  +G    L T  ILI+ FCK G+
Sbjct: 168 MRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGK 227

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNT 125
           +     +L  +       D++ +TSLI+  C                     P AITYNT
Sbjct: 228 MDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G CK G + +A E+F  M ++ V+PNV TYT +I G C      EA +L   M+ + 
Sbjct: 288 LIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKD 347

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +PNVVT+N+I+++LCK+  + +A  +++LM +   RPD  TYN+LL G C  G ++ A 
Sbjct: 348 EEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEAS 407

Query: 246 ELFVSM 251
           +L   M
Sbjct: 408 KLLYLM 413



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 14/209 (6%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N ++  L ++++++   S ++++  T  F +  + S L+ CF +M +      VL  +L+
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
             F  +V                YN ++ GLC+     KA  L  +M+  ++ P+VV+Y 
Sbjct: 136 RGFAFNVYN--------------YNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYN 181

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +VIRGFC   +  +A +L  EM   G   ++VT+ +++D  CK GKMDEA  LL  M   
Sbjct: 182 TVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHK 241

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           G+  D   Y +L+ GFC  G ++  K LF
Sbjct: 242 GLEADLIVYTSLIRGFCDCGELDRGKALF 270



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 23/234 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ I++    K    D  + L K +   GL  DL  ++ LI  FC  G +  G  +   +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
           L    +P  +T+ +LI+  CK                    P+  TY  +IDGLC  G  
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKT 333

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +L   M  K+ +PNVVTY  +I   C  +   +A  +   M  +  +P+ +T+N +
Sbjct: 334 KEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSL 393

Query: 197 MDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  LC  G +DEAS LL LM++      PD  ++N L+ G C   R++ A +++
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIY 447



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V SFN ++  L K       L ++  L       D+ T +IL+N   K G V+   
Sbjct: 420 TDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAM 479

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +  +I  S   P+              + TY T+IDG CK G ++ AK L  KM+   +
Sbjct: 480 ELWKQISNSKIVPN--------------SDTYTTMIDGFCKTGMLNVAKGLLCKMRLSEL 525

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+V  Y  ++   C     ++A RLF EM      P+V++FN+++D   K G +  A S
Sbjct: 526 PPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAES 585

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LL  M   G+ PD FTY+ L++ F   G ++ A   F  M   G
Sbjct: 586 LLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSG 629



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 122/254 (48%), Gaps = 23/254 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I+D ++    +   V++ NI+L    K+   +  + L+K+++++ + P+  T++ 
Sbjct: 441 HQALDIYDLLVEKLGAGDIVTT-NILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTT 499

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I+ FCK G ++    +L ++  S   P V  +  L+  +CK                  
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDD 559

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD I++N +IDG  K G +  A+ L + M    + P++ TY+ +I  F      +EA 
Sbjct: 560 SFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAI 619

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F +M+D G +P+    + ++      G+ D+ +  +  ++   V  D     T++D  
Sbjct: 620 SFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYM 679

Query: 236 C-LTGRVNHAKELF 248
           C  +G ++ AK L 
Sbjct: 680 CSSSGNMDIAKRLL 693



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N ++  L +    + A   + KM + +   N V+ + ++  F        A  +   M+ 
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G   NV  +N+++  LC+N +  +A SLL  M Q+ + PD  +YNT++ GFC    +  
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 244 AKELFVSMESMGC 256
           A +L   M+  GC
Sbjct: 196 ALQLANEMQGSGC 208


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  L K K  +  + L   +  +   P+ +T+ IL++  CK GRV     +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           LG + R     DVV               Y+T+I G C +G +D+ K LF +M +K + P
Sbjct: 68  LGEMKRKGLEVDVVV--------------YSTLISGFCSKGCLDRGKALFDEMLEKGISP 113

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV Y+ +I GFC    W EA  +   M ++G+QP+V T+  ++  LCK+G+  +A  L 
Sbjct: 114 NVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF 173

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           DLM + G  P   TYN L++G C  G +  A ++F +M   G
Sbjct: 174 DLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215



 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 25/257 (9%)

Query: 24  DYMLRMHPSPPPVSSFN--IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D ++ M  S    +SF   I++  L K    +  + L   +   GL  D+  +S LI+ F
Sbjct: 31  DLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGF 90

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           C  G +  G  +   +L    +P+VV ++ LI   CK                    PD 
Sbjct: 91  CSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDV 150

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TY  +I GLCK G   KA +LF  M +K  +P+ VTY  +I G C      +A ++F  
Sbjct: 151 YTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFET 210

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLT 238
           M+++G +  VV++N ++  LC NGK+DEA  L   +++ G  V PD  T+NT++ G C  
Sbjct: 211 MLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKE 270

Query: 239 GRVNHAKELFVSMESMG 255
           GR++ A E++ +M   G
Sbjct: 271 GRLDKAVEIYDTMIERG 287



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 17/197 (8%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
            KR+N   + PD+ +++ +IN  CK  R+     +L  +  S               C+P
Sbjct: 1   MKRIN---ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSS--------------CEP 43

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           ++ TY  ++DGLCK+G V++A  L  +MK K ++ +VV Y+++I GFC     +  K LF
Sbjct: 44  NSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALF 103

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM+++G+ PNVV ++ +++  CK G   EA+++L  M + G++PD +TY  ++ G C  
Sbjct: 104 DEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKD 163

Query: 239 GRVNHAKELFVSMESMG 255
           GR   A +LF  M   G
Sbjct: 164 GRARKALDLFDLMTEKG 180



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ I+D M+    S   + + +I++G   K+   D  + L+KR++  GL P   T+S+
Sbjct: 274 DKAVEIYDTMIE-RGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSV 332

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+ FCKM  ++    +  R+  S  +P +                YNT++  LCK+  +
Sbjct: 333 MIDGFCKMHMLNFAKGLFSRMKISGLSPTL--------------FDYNTLMASLCKESSL 378

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A+ LF +MK+ N +P+ +++  +I G   A D + AK L  +M   G+ P+  T++  
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ L K G+M+EA    D MI  G+ PD   Y++L+ GF L   +     L   M  MG
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMG 497



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 120/280 (42%), Gaps = 58/280 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  M+G L K+      L LF  +   G  P   T+++LIN  CK G +   F +
Sbjct: 148 PDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKI 207

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------------KVCKPDAITYNTIIDGL 130
              +L      +VV++ +LI                          +PD IT+NT+I GL
Sbjct: 208 FETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267

Query: 131 CKQ-----------------------------------GFVDKAKELFLKMKDKNVKPNV 155
           CK+                                   G +DKA EL+ ++    + P+ 
Sbjct: 268 CKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSS 327

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY+ +I GFC  +  N AK LF  M   G+ P +  +N +M  LCK   +++A  L   
Sbjct: 328 TTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQE 387

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M +    PD  ++N ++DG    G ++ AKEL   M+ MG
Sbjct: 388 MKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMG 427



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLR-MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA+ +F  +L   +   P V +FN ++  L K    D  + ++  +   G F +L+T  
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCH 296

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  + K G +     +  R+ +    P               + TY+ +IDG CK   
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGLVPS--------------STTYSVMIDGFCKMHM 342

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++ AK LF +MK   + P +  Y +++   C  +   +A+RLF EM +   +P+ ++FN+
Sbjct: 343 LNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNI 402

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D   K G +  A  LL+ M Q G+ PDA+TY++ ++     G++  AK  F SM + G
Sbjct: 403 MIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASG 462


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSI 76
           +AL  FD  L +  + P V S+  ++  L K    D    LF+++  + G  P+ +T++ 
Sbjct: 78  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 137

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK  R+     V+    +  F PDVVT              YNT++  L + G V
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVT--------------YNTLMAALFQLGRV 183

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A   F +M ++   P +V++ ++I G C A    +A  +F EM+D+   PN+VT++V+
Sbjct: 184 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 243

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK+ ++DEA  LLD M+  G RPD   Y  L+ GF   GR++ A  L   M S GC
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 303



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F  M+      P   ++N ++  L K    D   ++          PD+ T++ 
Sbjct: 113 DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNT 172

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L+    ++GRV        ++    + P +V+F ++I  +C+                  
Sbjct: 173 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 232

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY+ +IDGLCK   +D+A++L  +M  +  +P++V YT ++ GF  A   + A 
Sbjct: 233 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 292

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M+ QG  P+VVT+ V++D+LCK G++D+A  +   ++ +   P+  TY+ L+ G+
Sbjct: 293 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGY 352

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   RV+   ++   M  M C
Sbjct: 353 CRASRVDEGGKV---MREMAC 370



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 25/236 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL  F  M       P + SFN ++  L + +     L +F  +      P+L T+S+
Sbjct: 184 DEALATFTQMTE-EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSV 242

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  CK  ++     +L R++     PD+V +T L+                     + 
Sbjct: 243 VIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG 302

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY  +ID LCK G VD A E+F ++      PNVVTY+++I G+C A+  +E  
Sbjct: 303 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG 362

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++  EM     +PNVVT+N ++  L    + +EA  +   M + G  PDA TY  L
Sbjct: 363 KVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 415



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           ++TYN +I G C    +D A  L  +M  + ++ N  T + +++G C      +A   F 
Sbjct: 25  SVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFD 84

Query: 180 EMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCL 237
             ++    QP+VV++  +++ LCK G++D A  L   M+   G RP+AFTYN L+DG C 
Sbjct: 85  ASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 144

Query: 238 TGRVNHAKELF 248
             R++ A+ + 
Sbjct: 145 QDRLDAARAVI 155



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 19/167 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M+     P  V+   ++LG  A  +  D+ L L +R+ S G  PD+ T+++
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR-LDSALGLLRRMVSQGCIPDVVTYTV 312

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCKP 118
           +I+  CK+GRV     +   ++ +  +P+VVT+++LI                    C+P
Sbjct: 313 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRP 372

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           + +TYNT+I GL      ++A  +F +M +    P+  TY  + R  
Sbjct: 373 NVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 4/128 (3%)

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           + + G  ++A +LF +     +  + VTY  +IRGFC A+D + A  L  EM  +G+Q N
Sbjct: 1   MVRAGSHNQALQLF-RENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCN 59

Query: 190 VVTFNVIMDELCKNGKMDEASSLLD--LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
             T ++I+  LC+ G++ +A    D  L + H  +PD  +Y TL++G C  GRV+ A +L
Sbjct: 60  DRTTSIILQGLCRCGRVAQALEHFDASLELAHA-QPDVVSYTTLINGLCKLGRVDAAFDL 118

Query: 248 FVSMESMG 255
           F  M + G
Sbjct: 119 FRKMVAAG 126


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N +L  L+K    D + +++  L +  + P++YT + ++N +CK+G V    + 
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +I+++   PD  T+TSLI                     K C+ + ++Y  +I GLC+
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A +LF  M + N  P V TYT +I     +    EA  LF EM ++G +PNV T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V++D LCK  KMDEA  +L  M + G+ P   TYN L+DG+C  G ++ A E+   ME
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396

Query: 253 SMGC 256
           S  C
Sbjct: 397 SNSC 400



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL +F  M   +  P  V ++ +++  L+ +      L+LF  +   G  P+++T+++
Sbjct: 281 NEALKLFADMTEDNCCPT-VRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK  ++     +L  +      P VVT+ +LI                       
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN +I GLCK+  V KA  L  KM ++ + P+++TY S+I G C  ND   A 
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M + G+ P+  T++V +D LCK G+++EA +L D +   GV+ +   Y  L+DG+
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+++ A  L   M +  C
Sbjct: 520 CKVGKIDVAYSLLERMLNDAC 540



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +   + S    P+  T++ LI   CK  +V     +
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L    +P ++T+ SLI   CK                    PD  TY+  ID LCK
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V++A  LF  +K K VK N V YT++I G+C     + A  L   M++    PN  T
Sbjct: 487 EGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYT 546

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV+++ LCK  KM EASSL+  M+  GV+P   TY  L+      G  +HA ++F  M 
Sbjct: 547 YNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV 606

Query: 253 SMG 255
           S+G
Sbjct: 607 SLG 609



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + + ML    SP  ++ +N ++    K    ++   L   +N  GL PD +T+S+
Sbjct: 421 HKAMALLNKMLERKLSPSLIT-YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
            I+  CK GRV     +   +       + V +T+LI                       
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P++ TYN +I+GLCK+  + +A  L  KM    VKP VVTYT +I        ++ A 
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M+  G QP+V T+   +      G ++E   ++  M + G+ PD  TY  L+DG+
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G  + A +    M   GC
Sbjct: 660 ARLGLTHRAFDFLKCMVDTGC 680



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 75/140 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP    YNTI+  L K   +D+ K ++L++ +  + PN+ T+ +++ G+C   +  EA+ 
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              +++  G+ P+  T+  ++   C+N  +D A  +  +M Q G + +  +Y  L+ G C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR+N A +LF  M    C
Sbjct: 276 EAGRINEALKLFADMTEDNC 295



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 40/279 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +F++M+ +    P V ++   L         + V  +  ++N  G+ PDL T+++
Sbjct: 596 DHALKVFNHMVSL-GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------- 114
           LI+ + ++G     F  L  ++ +   P +   + LIK                      
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 115 -----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                             C  D   Y  +I G C+Q  +++A+ L   MK++ + P+   
Sbjct: 715 TLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDI 774

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S++   C    + EA RL   M++ G+ P + ++ +++  L   G  ++A ++   ++
Sbjct: 775 YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL 834

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G   D   +  L+DG      V+   EL   ME  GC
Sbjct: 835 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGC 873


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 59/281 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           SP  V ++N ++    +  H D    L   + S  + PD YT++ LI   C  GRV+   
Sbjct: 106 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 162

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +L  +LR    P+VVT+T L+                     K C P+ +TYN II+G+
Sbjct: 163 SLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 222

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G VD A++L  ++     +P+ V+YT++++G C +  W++ + LF EMM++   PN 
Sbjct: 223 CREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 282

Query: 191 VTF-----------------------------------NVIMDELCKNGKMDEASSLLDL 215
           VTF                                   N++++ +CK G++D+A   L+ 
Sbjct: 283 VTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNN 342

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M  +G  PD  +Y T+L G C   R N AKEL   M    C
Sbjct: 343 MGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNC 383



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D MLR     P V ++ ++L  + KN  ++  +++   + + G  P++ T++++
Sbjct: 160 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 218

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+ GRV     +L R+      PD V++T+L+K                      C
Sbjct: 219 INGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 278

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 279 MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFK 338

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V++G C A  WN+AK L  EM+     PN VTFN  +  LC
Sbjct: 339 FLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILC 398

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +++A  L++ M +HG      TYN L++GFC+ G ++ A ELF SM
Sbjct: 399 QKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 448



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 105/209 (50%), Gaps = 18/209 (8%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           G  PD+Y  + LI   C+ GR S    VL     S    DV  + +L+   C+       
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PDA TY  +I  LC +G V  A  L   M  +  +PNVVTYT ++   C 
Sbjct: 130 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            + + +A  +  EM  +G  PN+VT+NVI++ +C+ G++D+A  LL+ +  +G +PD  +
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS 249

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           Y TLL G C + R +  +ELF  M    C
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMMEKNC 278



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  +L  L + + ++    L K +      P+  T +  I   C+ G +    ++
Sbjct: 350 PDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 409

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------VCKPDAITYNTIIDGLCKQGF 135
           + ++     T  VVT+ +L+                    CKP+ ITY T++ GLC    
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAER 469

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A EL  +M  ++  PNVVT+  ++  FC     +EA  L  +MM+ G  PN++T+N 
Sbjct: 470 LDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNT 529

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + D + K+   ++A  LL  ++  GV PD  T+++++       RV  A ++F   + +G
Sbjct: 530 LFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIG 589



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 25/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + + M + H     V ++N ++       H D+ L LF+   S    P+  T++ L
Sbjct: 405 QAIMLIEQM-QEHGCTVGVVTYNALVNGFCVQGHIDSALELFR---SMPCKPNTITYTTL 460

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +   C   R+     ++  +L     P+VVTF  L+                       C
Sbjct: 461 LTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGC 520

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ ITYNT+ DG+ K    + A EL   +  K V P+V+T++S+I      +   EA +
Sbjct: 521 TPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQ 580

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F    D G++P  + +N I+  LCK  ++D A   L  M+ +G  P+  TY  L++G  
Sbjct: 581 MFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLA 640

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A++L   + S G
Sbjct: 641 REGLLKEAQDLLSMLCSRG 659



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 21/217 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R  P  P   ++  +L  L   +  D    L   +      P++ T ++L+N FC+ G
Sbjct: 444 LFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKG 503

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     ++ +++    TP+++T+ +L                      K   PD IT++
Sbjct: 504 FLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFS 563

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +II  L K+  V++A ++F   +D  ++P  + Y  ++ G C  ++ + A      M+  
Sbjct: 564 SIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSN 623

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           G  PN  T+ ++++ L + G + EA  LL ++   GV
Sbjct: 624 GCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF-IEMMDQGVQPNVVTFNVIMDELCKNGK 205
           +  NV PN  +  + +R      D   A RL  +     G  P+V     ++  LC+ G+
Sbjct: 33  ESPNVAPNPAS--ARLRRLIAREDLAGAARLVELSASRDGEAPDVYLCTKLIRNLCRRGR 90

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             +A+ +L      G   D F YNTL+ G+C  G ++ A+ L  SM
Sbjct: 91  TSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM 136


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++    K+++       F+ +   GL P++ T++ LIN  C  G++     +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++     P++VT+ +LI   CK                    P+ IT+NT+ID  CK
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +++   L   M D+ + PNV TY  +I G C   D   AK L  EM ++G++ +VVT
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D LCKN K   A  LL+ M   G++P+  TYNTL+DG+C+ G++  A  +   ME
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRME 510



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 27/252 (10%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R+H +   +++FNI +  L +    +      + + + G+ P++ T++ L++ +CK G  
Sbjct: 195 RIHTN---LNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSA 251

Query: 88  SHGF---VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITY 123
              +     +  +L +   P+ VTF +LI                     +  KP+ +TY
Sbjct: 252 GKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTY 311

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N++I+GLC  G +++A +L+ KM    +KPN+VTY ++I GFC      EA ++F ++  
Sbjct: 312 NSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSK 371

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           Q + PNV+TFN ++D  CK G M+E  SL   M+  G+ P+  TYN L+ G C    +  
Sbjct: 372 QELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQA 431

Query: 244 AKELFVSMESMG 255
           AKEL   ME+ G
Sbjct: 432 AKELLNEMENKG 443



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L  N   +  + L+ ++   GL P++ T++ LIN FCK   +     V
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              + +    P+V+TF ++I   CK                    P+  TYN +I GLC+
Sbjct: 366 FDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCR 425

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +  AKEL  +M++K +K +VVTY  +I G C  +    A++L  EM + G++PN VT
Sbjct: 426 KQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVT 485

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +MD  C  GK+  A ++   M +   +P+  TYN L+ G+C   ++  A  L   M 
Sbjct: 486 YNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEML 545

Query: 253 SMG 255
             G
Sbjct: 546 EKG 548



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 22/233 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++D M+ +   P  V+ +N ++    K K       +F  ++   L P++ T + +
Sbjct: 326 EAIDLWDKMVGLGLKPNIVT-YNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTM 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ +CK G +  GF +   +L     P+V T+  LI                     K  
Sbjct: 385 IDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D +TYN +IDGLCK      A++L  +M +  +KPN VTY +++ G+C       A  
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALN 504

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +   M  +  QPNVVT+NV++   CK  K++ A+ LL+ M++ G+ P+  TY+
Sbjct: 505 VRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYD 557



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 14/171 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N ++  L + +       L   + + GL  D+ T++ILI+  CK  +  +    
Sbjct: 411 PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA--- 467

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++L   F   +          KP+ +TYNT++DG C +G +  A  +  +M+ +  +P
Sbjct: 468 -EKLLNEMFNLGL----------KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQP 516

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           NVVTY  +I+G+C  N    A  L  EM+++G+ PN  T++++  E+ + G
Sbjct: 517 NVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N ++  L K+  +   + ++ +M  + +  N+ T+   I G C A   N+A+    +M  
Sbjct: 169 NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA 228

Query: 184 QGVQPNVVTFNVIMDELCKN---GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
            G+ PNVVT+N ++D  CK    GKM +A + +  M+ + + P+  T+NTL+DGFC    
Sbjct: 229 WGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDEN 288

Query: 241 VNHAKELFVSMESMG 255
           V  AK+ F  M+  G
Sbjct: 289 VAAAKKAFEEMQKQG 303



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E F + KD   K ++ +   ++      N   + + ++ EM+ + +  N+ TFN+ ++
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            LC+ GK+++A   ++ M   G+ P+  TYNTL+DG+C  G      +    M+ M
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEM 264



 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 40/82 (48%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A   F    D G + ++ + N ++  L K  K+ +   +   MI+  +  +  T+N  ++
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G C  G++N A++    M++ G
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWG 230


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 147/308 (47%), Gaps = 71/308 (23%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-------HYDTVLSLFKRLNS---TGL 67
           +AL +FD +L  H  P  V +FN +L  ++++          +TV+SLF R+       +
Sbjct: 32  DALKLFDELLP-HARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKV 90

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFT------------------------ 103
            P+  T+SILI CFC+MG + HGF   G IL++ +                         
Sbjct: 91  APNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMD 150

Query: 104 ------------PDVVTFTSLIK------------------------VCKPDAITYNTII 127
                       PD V++  L+K                         C P+ ++Y+T+I
Sbjct: 151 VLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVI 210

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +G   +G VDK   LFL+M D+ + P+VVTYT+VI G C A  ++ A+ +F +M+D GV+
Sbjct: 211 NGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVK 270

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+ T+N ++      GK  E   +L+ M   G +P+  TY +LL+  C  GR   A+  
Sbjct: 271 PNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFF 330

Query: 248 FVSMESMG 255
           F SM   G
Sbjct: 331 FDSMIGKG 338



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD M+      P V+++ IML   A       +  L   + + G+ P+ +  +I 
Sbjct: 326 EARFFFDSMIG-KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIF 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            + + K G +     +  ++ +   +PD              A++Y  +ID LCK G VD
Sbjct: 385 FSAYAKCGIIDKAMDIFNKMRQQGLSPD--------------AVSYGALIDALCKLGRVD 430

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+  F +M ++ V P++V ++S++ G C  + W + + LF EM++ G+ PN+V FN I+
Sbjct: 431 DAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTIL 490

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK G++ E   L+D +   GVRPD  +YNTL+DG CL G ++ A +L   M S+G
Sbjct: 491 CNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 548



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 20/238 (8%)

Query: 24  DYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF---PDLYTHSIL 77
           D +L+  P     P   S+NI+L  L   K  +  L L   +    ++   P++ ++S +
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN F   G+V   + +   ++     PDVVT+T              T+IDGLCK    D
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYT--------------TVIDGLCKAQLFD 255

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A+ +F +M D  VKPN+ TY  +I G+     W E  R+  EM   G +PN  T+  ++
Sbjct: 256 RAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLL 315

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCKNG+  EA    D MI  G++P   TY  +L G+   G ++   +L   M + G
Sbjct: 316 NYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG 373



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A   F+ M+    +P  V   +++ G    +K ++ V  LF  + + G+ P++   + 
Sbjct: 430 DDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDK-WEKVEELFFEMLNVGIHPNIVFFNT 488

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   CK GRV  G  ++  I      PDV+++ +LI                       
Sbjct: 489 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 548

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD+ +YNT++ G CK G +D A   F KM    + P VVTY +++ G      ++EAK
Sbjct: 549 LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 608

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ M++ G + ++ T+N+I++ LCK+  +DEA  +   +   G++ +  T+N ++   
Sbjct: 609 ELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGAL 668

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   A +LF ++ + G
Sbjct: 669 LKGGRKEDAMDLFAAIPANG 688



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 18/224 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N ++   CLA     D    L + + S GL PD ++++ L++ +CK GR+   +
Sbjct: 516 PDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               ++L +  TP VVT              YNTI+ GL +     +AKEL+L M +   
Sbjct: 574 SHFRKMLSNGITPGVVT--------------YNTILHGLFQTKRFSEAKELYLNMINSGT 619

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K ++ TY  ++ G C +N  +EA ++F  +  +G+Q N++TFN+++  L K G+ ++A  
Sbjct: 620 KWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 679

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   +  +G+  +  TY  +++     G +     LF +ME  G
Sbjct: 680 LFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNG 723



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S++ ++         D   +LF  +   G+ PD+ T++ +I+  CK         
Sbjct: 200 PPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEA 259

Query: 93  VLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLC 131
           V  +++ +   P++ T+  LI                        KP+  TY ++++ LC
Sbjct: 260 VFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLC 319

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G   +A+  F  M  K +KP+V TY  ++ G+      +E   L   M+  G+ PN  
Sbjct: 320 KNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHH 379

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            FN+      K G +D+A  + + M Q G+ PDA +Y  L+D  C  GRV+ A+  F  M
Sbjct: 380 IFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439

Query: 252 ESMG 255
            + G
Sbjct: 440 INEG 443



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 83/144 (57%)

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           L+K   PD +TYNTI+ GL + G   +AKEL+L M +   + N+ TY  ++ G C +N  
Sbjct: 818 LMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCV 877

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +EA ++F  +  +G+Q N++TFN+++  L K G+ ++A  L   +  +G+ PD  TY  +
Sbjct: 878 DEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLV 937

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
            +     G +     LF++ME  G
Sbjct: 938 AENLIEEGSLEEFDGLFLTMEKSG 961



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 109/234 (46%), Gaps = 14/234 (5%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++ +++  L +    +   SLF  +   G  P+    + L+      G +S     L 
Sbjct: 693 VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNT--------IIDGLCKQGFVDKAKE------ 141
           ++    F+ +  T + LI +   D   ++         I++       + KA+       
Sbjct: 753 KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYS 812

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF +M  K + P+VVTY +++ G      ++EAK L++ M++   Q N+ T+N+I++ LC
Sbjct: 813 LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLC 872

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K+  +DEA  +   +   G++ +  T+N ++      GR   A +LF ++ + G
Sbjct: 873 KSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 16/200 (8%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           + K +  D   SLF+ +   GL PD+ T++ ++          HG    GR     F+  
Sbjct: 801 IKKARRIDDAYSLFREMLMKGLTPDVVTYNTIL----------HGLFQTGR-----FSEA 845

Query: 106 VVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
              + S+I    + +  TYN I++GLCK   VD+A ++F  +  K ++ N++T+  +I  
Sbjct: 846 KELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGA 905

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
                   +A  LF  +   G+ P+VVT+ ++ + L + G ++E   L   M + G   D
Sbjct: 906 LLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLD 965

Query: 225 AFTYNTLLDGFCLTGRVNHA 244
           +   N L+      G ++ A
Sbjct: 966 SRLLNALVRRLLQRGDISRA 985



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 17/232 (7%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++A  +F  ML M    P V ++N +L  L +   +     L+  + ++    ++YT++I
Sbjct: 808  DDAYSLFREML-MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGF 135
            ++N  CK   V   F +               F SL  K  + + IT+N +I  L K G 
Sbjct: 867  ILNGLCKSNCVDEAFKM---------------FQSLCSKGLQLNIITFNIMIGALLKGGR 911

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             + A +LF  +    + P+VVTY  V           E   LF+ M   G   +    N 
Sbjct: 912  KEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNA 971

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++  L + G +  A + L  + +     +A T + L+  F      +HAK L
Sbjct: 972  LVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 14/201 (6%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            L +   +   G  PD+ T++I+IN  CKMG +S   VV+   +   + PDV TF     
Sbjct: 380 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF----- 434

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                    NT+IDG CK+  +D A +L  +M +  + P+ +TY SV+ G C A   NE 
Sbjct: 435 ---------NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEV 485

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F EM+ +G  PN +T+N++++  C++ KM+EAS ++  M Q G+ PDA ++NTL+ G
Sbjct: 486 NETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYG 545

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           FC  G +  A  LF  +E  G
Sbjct: 546 FCRNGDLEGAYLLFQKLEEKG 566



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K       +   +R+ + G  PD +T++ +I+ +CK+  V     +
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD VT+ SLI                     K  KPD + YN+++ GLC 
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A ++  +M ++   P++ TY  VI G C   + ++A  +  + + +G  P+V T
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK  K+D A  L++ M ++G+ PD  TYN++L+G C  G+VN   E F  M 
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 253 SMGC 256
             GC
Sbjct: 494 LKGC 497



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L    ++D    ++ R+ + G+ PDL+TH+I +  FC   R      
Sbjct: 83  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 138

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +  R+LR+              +    A+ Y T++ GL   G    A++LF +M   +V 
Sbjct: 139 IALRLLRA--------------LPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 184

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+  +  V+   C   D  EA  L  +++ +G+  N+ T+N+ +  LC+ G++ EA  L
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 244

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D M  + V PD  TYNTL+ G C       A      M + GC
Sbjct: 245 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 287



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 31/170 (18%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------- 166
            C P A  YN I+D L    + D+A +++++M    V P++ T+T  +R FC        
Sbjct: 81  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 140

Query: 167 ----------------------YANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                                 YA+   ++A++LF +M+   V PN+  FN ++  LCK 
Sbjct: 141 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 200

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           G + EA  LL  +IQ G+  + FTYN  + G C  GR+  A  L   M +
Sbjct: 201 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRA 250



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 22/229 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL + + M     +P  ++ +N +L  L K    + V   F+ +   G  P+  T++I
Sbjct: 448 DSALQLVERMWEYGIAPDTIT-YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 506

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  FC+  ++     V+ ++ +    PD V+F +LI                     K 
Sbjct: 507 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 566

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
               A T+NT+I     +  +  A+++F +M  K  + +  TY  +I G C   + + A 
Sbjct: 567 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 626

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
              +EM+ +G  P++ TF  +++ L  N ++ +A  ++ +M++ GV P+
Sbjct: 627 MHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 22/196 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NE    F  M+     P P++ +NI++    ++   +    +  +++  GL PD  + + 
Sbjct: 483 NEVNETFQEMILKGCHPNPIT-YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNT 541

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  FC+ G +   +++  ++    ++    TF +LI                     K 
Sbjct: 542 LIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG 601

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D+ TY  +IDG CK   VD+A    ++M  K   P++ T+  VI      +   +A 
Sbjct: 602 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 661

Query: 176 RLFIEMMDQGVQPNVV 191
            +   M+  GV P VV
Sbjct: 662 GIIHIMVKIGVVPEVV 677



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y + IR +  A    +A   F  M      P    +N IMD L      D+A  +   M+
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             GV PD  T+   L  FCLT R + A  L  ++   G 
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA 152


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 139/269 (51%), Gaps = 23/269 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  T+ T ++A+ +  ++L  H  P  ++ +N ++    +    D+   +  R+ + G  
Sbjct: 101 GLFTSKTIDKAIQVM-HILENHGHPDLIA-YNAIITGFCRANRIDSAYQVLDRMKNKGFS 158

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------ 116
           PD+ T++ILI   C  G +        ++L+    P VVT+T LI+              
Sbjct: 159 PDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKL 218

Query: 117 ---------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    +PD  TYN+II G+C++G+VD+A ++   +  K   P+V+TY  ++RG   
Sbjct: 219 LDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLN 278

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
              W     L  +M+ +G + NVVT++V++  +C++GK++E   LL  M + G++PD + 
Sbjct: 279 QGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYC 338

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           Y+ L+   C  GRV+ A E+   M S GC
Sbjct: 339 YDPLIAALCKEGRVDLAIEVLDVMISDGC 367



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 23/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI+L  L     ++    L   + + G   ++ T+S+LI+  C+ G+V  G  +
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  + +    PD   +  LI                       C PD + YNTI+  LCK
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q   D+A  +F K+ +    PN  +Y S+            A  + +EM+D+GV P+ +T
Sbjct: 384 QKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGIT 443

Query: 193 FNVIMDELCKNGKMDEASSLL-DLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +N ++  LC++G +DEA  LL D+ ++    +P   +YN +L G C   RV+ A E+  +
Sbjct: 444 YNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAA 503

Query: 251 MESMGC 256
           M   GC
Sbjct: 504 MVDKGC 509



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++G L      D+ L    +L      P + T++ILI      G +     +
Sbjct: 159 PDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKL 218

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  +L     PD+ T+ S+I+ +C+                    PD ITYN ++ GL  
Sbjct: 219 LDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLN 278

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG  +   EL   M  +  + NVVTY+ +I   C      E   L  +M  +G++P+   
Sbjct: 279 QGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYC 338

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LCK G++D A  +LD+MI  G  PD   YNT+L   C   R + A  +F  + 
Sbjct: 339 YDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLG 398

Query: 253 SMGC 256
            +GC
Sbjct: 399 EVGC 402



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 22/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D ML ++  P  + ++N ++  + +  + D    +   ++S G  PD+ T++I
Sbjct: 213 DEAMKLLDEMLEINLQPD-MFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNI 271

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L+      G+   G+ ++  ++      +VVT++ LI  VC                   
Sbjct: 272 LLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKG 331

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD   Y+ +I  LCK+G VD A E+   M      P++V Y +++   C     +EA 
Sbjct: 332 LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEAL 391

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F ++ + G  PN  ++N +   L   G    A  ++  M+  GV PD  TYN+L+   
Sbjct: 392 SIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCL 451

Query: 236 CLTGRVNHAKELFVSME 252
           C  G V+ A EL V ME
Sbjct: 452 CRDGMVDEAIELLVDME 468



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 23/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++++++  + ++   +  + L K +   GL PD Y +  LI   CK GRV     VL 
Sbjct: 301 VVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLD 360

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++     PD+V + +++                       C P+A +YN++   L   G
Sbjct: 361 VMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTG 420

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI--EMMDQGVQPNVVT 192
              +A  + L+M DK V P+ +TY S+I   C     +EA  L +  EM     +P+VV+
Sbjct: 421 HKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVS 480

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LCK  ++ +A  +L  M+  G RP+  TY  L++G    G +N A++L  ++ 
Sbjct: 481 YNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLV 540

Query: 253 SM 254
           +M
Sbjct: 541 NM 542



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 20/194 (10%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--------------------KPDAI 121
           CK G  +     L  ++     PDVV  T LI                        PD I
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLI 127

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            YN II G C+   +D A ++  +MK+K   P++VTY  +I   C     + A     ++
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQL 187

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +  +P VVT+ ++++     G +DEA  LLD M++  ++PD FTYN+++ G C  G V
Sbjct: 188 LKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYV 247

Query: 242 NHAKELFVSMESMG 255
           + A ++  S+ S G
Sbjct: 248 DRAFQIISSISSKG 261



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 23/173 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L CL K K  D  LS+F++L   G  P+  +++ + +     G       +
Sbjct: 369 PDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGM 428

Query: 94  LGRILRSCFTPDVVTFTSLIKV-----------------------CKPDAITYNTIIDGL 130
           +  +L     PD +T+ SLI                         CKP  ++YN ++ GL
Sbjct: 429 ILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGL 488

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           CK   V  A E+   M DK  +PN  TYT +I G  +    N+A+ L   +++
Sbjct: 489 CKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVN 541


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 14/201 (6%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            L +   +   G  PD+ T++I+IN  CKMG +S   VV+   +   + PDV TF     
Sbjct: 379 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF----- 433

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                    NT+IDG CK+  +D A +L  +M +  + P+ +TY SV+ G C A   NE 
Sbjct: 434 ---------NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEV 484

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F EM+ +G  PN +T+N++++  C++ KM+EAS ++  M Q G+ PDA ++NTL+ G
Sbjct: 485 NETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYG 544

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           FC  G +  A  LF  +E  G
Sbjct: 545 FCRNGDLEGAYLLFQKLEEKG 565



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K       +   +R+ + G  PD +T++ +I+ +CK+  V     +
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD VT+ SLI                     K  KPD + YN+++ GLC 
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A ++  +M ++   P++ TY  VI G C   + ++A  +  + + +G  P+V T
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK  K+D A  L++ M ++G+ PD  TYN++L+G C  G+VN   E F  M 
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 253 SMGC 256
             GC
Sbjct: 493 LKGC 496



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L    ++D    ++ R+ + G+ PDL+TH+I +  FC   R      
Sbjct: 82  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 137

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +  R+LR+              +    A+ Y T++ GL   G    A++LF +M   +V 
Sbjct: 138 IALRLLRA--------------LPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 183

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+  +  V+   C   D  EA  L  +++ +G+  N+ T+N+ +  LC+ G++ EA  L
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 243

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D M  + V PD  TYNTL+ G C       A      M + GC
Sbjct: 244 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 286



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 31/170 (18%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------- 166
            C P A  YN I+D L    + D+A +++++M    V P++ T+T  +R FC        
Sbjct: 80  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 139

Query: 167 ----------------------YANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                                 YA+   ++A++LF +M+   V PN+  FN ++  LCK 
Sbjct: 140 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 199

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           G + EA  LL  +IQ G+  + FTYN  + G C  GR+  A  L   M +
Sbjct: 200 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRA 249



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 22/229 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL + + M     +P  ++ +N +L  L K    + V   F+ +   G  P+  T++I
Sbjct: 447 DSALQLVERMWEYGIAPDTIT-YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 505

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  FC+  ++     V+ ++ +    PD V+F +LI                     K 
Sbjct: 506 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 565

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
               A T+NT+I     +  +  A+++F +M  K  + +  TY  +I G C   + + A 
Sbjct: 566 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 625

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
              +EM+ +G  P++ TF  +++ L  N ++ +A  ++ +M++ GV P+
Sbjct: 626 MHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 22/196 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NE    F  M+     P P++ +NI++    ++   +    +  +++  GL PD  + + 
Sbjct: 482 NEVNETFQEMILKGCHPNPIT-YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNT 540

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  FC+ G +   +++  ++    ++    TF +LI                     K 
Sbjct: 541 LIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG 600

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D+ TY  +IDG CK   VD+A    ++M  K   P++ T+  VI      +   +A 
Sbjct: 601 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 660

Query: 176 RLFIEMMDQGVQPNVV 191
            +   M+  GV P VV
Sbjct: 661 GIIHIMVKIGVVPEVV 676



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y + IR +  A    +A   F  M      P    +N IMD L      D+A  +   M+
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             GV PD  T+   L  FCLT R + A  L  ++   G 
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA 151


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D ML      P V ++ ++L  + K+  +   + +   + + G  P++ T++++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+ GRV      L R+    F PD V++T+++K                      C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQ 341

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V++G C A  W +AK L  EM+ +   PN VTFN  +  LC
Sbjct: 342 FLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILC 401

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +++A+ L++ M +HG   +  TYN L++GFC+ GRV+ A ELF SM
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++    +    D    L   + S  + PD YT++ +I   C  GRV     +L 
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +L     P VVT+T L+                     K C P+ +TYN II+G+C++G
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD A+E   ++     +P+ V+YT+V++G C A  W + + LF EMM++   PN VTF+
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++   C+ G ++ A  +L+ M  HG   +    N +++  C  GRV+ A +   +M S 
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 255 GC 256
           GC
Sbjct: 350 GC 351



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 105/229 (45%), Gaps = 20/229 (8%)

Query: 30  HPSPPPVSS---FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
            P  P  SS    N  L  L           L  R  S G  PD+Y  + LI   C+ GR
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            S    VL    RS    DV                YNT++ G C+ G +D A+ L   M
Sbjct: 94  TSDAARVLRAAERSGTAVDV--------------FAYNTLVAGYCRYGQLDAARRLIASM 139

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
               V P+  TYT +IRG C      EA  L  +M+ +G QP+VVT+ V+++ +CK+   
Sbjct: 140 P---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGF 196

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +A  +LD M   G  P+  TYN +++G C  GRV+ A+E    + S G
Sbjct: 197 GQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 17/223 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN  +  L +    +    L ++++  G   ++ T++ L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +               F S+   CKP+ ITY T++ GLC    +D A EL  +M  K+  
Sbjct: 447 L---------------FYSM--PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVT+  ++  FC     +EA  L  +MM+ G  PN++T+N ++D + K+   +EA  L
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALEL 549

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  ++ +GV PD  TY++++       RV  A ++F  ++ +G
Sbjct: 550 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 592



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++         D+ L LF    S    P+  T++ L+   C   R+     +L 
Sbjct: 425 IVTYNALVNGFCVQGRVDSALELFY---SMPCKPNTITYTTLLTGLCNAERLDAAAELLA 481

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +L+    P+VVTF  L+                       C P+ ITYNT++DG+ K  
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 541

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL   +    V P++VTY+S+I      +   EA ++F  + D G++P  V +N
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK    D A      M+ +G  P+  TY TL++G      +   ++L   + S 
Sbjct: 602 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661

Query: 255 G 255
           G
Sbjct: 662 G 662



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD      +I  LC++G    A  +    +      +V  Y +++ G+C     + A+RL
Sbjct: 76  PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 135

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M    V P+  T+  I+  LC  G++ EA SLLD M+  G +P   TY  LL+  C 
Sbjct: 136 IASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 192

Query: 238 TGRVNHAKELFVSMESMGC 256
           +     A E+   M + GC
Sbjct: 193 STGFGQAMEVLDEMRAKGC 211



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 21/212 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++  +L  L   +  D    L   +      P++ T ++L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 91  FVVLGRILRSCFTPDVVTFTSLI----KVC-----------------KPDAITYNTIIDG 129
             ++ +++    TP+++T+ +L+    K C                  PD +TY++II  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L ++  V++A ++F  ++D  ++P  V Y  ++   C   + + A   F  M+  G  PN
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            +T+  +++ L     + E   LL  +   GV
Sbjct: 632 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M+  H   P + ++N +L  + K+ + +  L L   L S G+ PD+ T+S 
Sbjct: 509 DEAIELVEQMME-HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I    +  RV     +            +V    +    +P A+ YN I+  LCK+   
Sbjct: 568 IIGVLSREDRVEEAIKMF----------HIVQDLGM----RPKAVIYNKILLALCKRCNT 613

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           D A + F  M      PN +TY ++I G    +   E + L  E+  +GV
Sbjct: 614 DGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 22/257 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PNEA+  F  ML      P    FN++L  L ++K  +T LSLFK+L+  G+ P+  T++
Sbjct: 184 PNEAIKAFHQMLEF-GYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYN 242

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           ILI   C   ++SH + +  ++ +    PDV T++ L++ +C+                 
Sbjct: 243 ILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNK 302

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PDA+TYNT+++ LC++  + +A  L  KMK     P+V+ Y +VI GFC      +A
Sbjct: 303 GYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDA 362

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++  +M + G  PN +++  +++ LC  GK DEA   ++ MI +G  P    Y+ L+ G
Sbjct: 363 CQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITG 422

Query: 235 FCLTGRVNHAKELFVSM 251
            C  G+V  A E+ V M
Sbjct: 423 LCNEGKVGEACEVLVMM 439



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSI 76
           A+ IF+   R        S+++ ++  L + + + T+  L +++   G    P L+    
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVD-- 173

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I  + ++G  +       ++L   + P    F  L+ V          +I+  C    +
Sbjct: 174 IIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIV----------LIEHKC----L 219

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  LF K+ +  + PN  TY  +IR  C+++  + A  LF +M  QG  P+V T++++
Sbjct: 220 ETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSIL 279

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M  LC+  ++  A  +LD M+  G  PDA TYNTLL+  C    +  A  L   M+ MGC
Sbjct: 280 MQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGC 339



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++I++  L +     T L +   + + G  PD  T++ L+N  C+   +   + +
Sbjct: 271 PDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRL 330

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++      PDV+ + ++I                       C P+A++Y T+++GLC 
Sbjct: 331 LSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCN 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D+AK+   +M      P++  Y  +I G C      EA  + + M  Q + P+  T
Sbjct: 391 EGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHEST 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           ++V++  +C++ +  EA  L+D + +   R
Sbjct: 451 WSVLLMRICEDSQ-TEARELVDKLSEDDWR 479


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 14/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D M R    PP V+  N ++  L K   +   L  FK +  T   PD+ T +I
Sbjct: 47  DQAYELLDEM-RDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNI 105

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   K GRV   F    +I  S  T            C P+ +TY T+I+GLCK G +
Sbjct: 106 LVDALVKSGRVEEAF----QIFESMHTSSQ---------CLPNVVTYTTVINGLCKDGKL 152

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A EL   M +    PNV+TY+ ++ G C A   ++   L  EM  +G QP+V+ +N +
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LCK+ ++DEA  L+ LMI+ G  P   TYN+L++ FC + +V+ A  L   M   GC
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  IF+ M       P V ++  ++  L K+   D  + L   +N TG  P++ T+S+
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CK GR   GF +L  + R  F PDV              I YNT+++GLCK   +
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDV--------------IMYNTLLNGLCKSRRL 222

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A EL   M      P VVTY S++  FC +   + A RL   M ++G  P+V+ +N +
Sbjct: 223 DEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTV 282

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN------HAKELFVS 250
           +  LC++ ++D+A +LL  M+     PD  TY+T++DG C   RV+       A E+   
Sbjct: 283 IAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEM 342

Query: 251 MESMGC 256
           M+  GC
Sbjct: 343 MKQTGC 348



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 27/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N +L  L K++  D  L L + +  +G +P + T++ L+  FC+  +V   F +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
           +  +      PDV+ + ++I                       C PD ITY+TIIDGLCK
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323

Query: 133 QGFVDK------AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
              VD       A E+   MK     PN  TY  VI G C A    +A  L   M+D  V
Sbjct: 324 DWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P++ +F++++  LCK+  +D A  +  +M +   +P+   Y  L+DG    G V+ A  
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVR 443

Query: 247 LFVSM 251
           +F  M
Sbjct: 444 VFELM 448



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 9/219 (4%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N ++  L ++   D   +L K++ +    PD+ T+S +I+  CK  RV   + 
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW- 331

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
              ++  +C   +++  T     C P+A TY  +I+GLC+     +A  L  +M D  V 
Sbjct: 332 ---KLEAACEILEMMKQTG----CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVV 384

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P++ +++ VI   C ++D + A ++F  M ++  +PN V +  ++D L K G++D+A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +LM++   RP   TYN++LDG C  GR+  A  +   M
Sbjct: 445 FELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGM 482



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TY ++I GLCK G +D+A EL  +M+D+ + P V  +  VI+G C A  + +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-IQHGVRPDAFTYNTLLDG 234
             F  +      P+++TFN+++D L K+G+++EA  + + M       P+  TY T+++G
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVING 145

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G+++ A EL   M   GC
Sbjct: 146 LCKDGKLDRAIELLDLMNETGC 167



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA C    M++    PP   ++ +++  L + +     L+L +R+  + + PDL + S++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   CK   +   + + G +                + CKP+ + Y  +IDGL K G VD
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSE--------------RECKPNPVAYAALIDGLSKGGEVD 439

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  +F  M + + +P V TY SV+ G C      EA R+   M+ +   P+  ++  ++
Sbjct: 440 KAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             LC+   ++EA  L   +   G   +   YN L++  C   R++ A
Sbjct: 499 RGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDA 545



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N  ++ L + G   +A +LF   +++   PN  TY S+I G C A   ++A  L  EM D
Sbjct: 2   NCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G+ P V   N ++  LCK G+  +A      +      PD  T+N L+D    +GRV  
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 244 AKELFVSMES 253
           A ++F SM +
Sbjct: 119 AFQIFESMHT 128


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V  FN+++  L K    +    LF  +   GL P + + + LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF- 280

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
              R+ R      V           PD  TY+ +I+GLCK+G +D A +LFL+M D+ + 
Sbjct: 281 ---RLKRFMMENRVF----------PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     +    ++ +M+ +GV+P+V+T+N +++ LCK G + EA  L
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M Q G++PD FTY  L+DG C  G +  A E+   M   G
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K+ + D    L + +    +FPD++T+S+LIN  CK G++     +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ VTFT+LI                     K  KPD ITYNT+I+GLCK
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +AK+L ++M  + +KP+  TYT +I G C   D   A  +  EM+ +G++ + V 
Sbjct: 378 VGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVA 437

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   C+ G++ EA   L  M++ G++PD  TY  ++ GFC  G V    +L   M+
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497

Query: 253 SMG 255
             G
Sbjct: 498 CDG 500



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 117/262 (44%), Gaps = 56/262 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LIN  C  GR   G  +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++LR    PDV+T+ +LI                     +  KPD  TY  +IDG CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 133 QGFVDKAKEL-----------------------------------FLKMKDKNVKPNVVT 157
           +G ++ A E+                                     +M +  +KP+  T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT VI GFC   D     +L  EM   G  P VVT+NV+++ LCK G+M  A+ LLD M+
Sbjct: 473 YTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAML 532

Query: 218 QHGVRPDAFTYNTLLDGFCLTG 239
             GV PD  TYN LL+G C  G
Sbjct: 533 NLGVVPDDITYNILLEGHCKHG 554



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 25/245 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G   T   +  + I+  MLR     P V ++N ++  L K         L   +   GL 
Sbjct: 339 GHCVTGRADLGMEIYQQMLR-KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------- 116
           PD +T+++LI+  CK G +     +   +++     D V FT+LI   C           
Sbjct: 398 PDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERT 457

Query: 117 ---------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KPD  TY  +I G CK+G V    +L  +M+     P VVTY  ++ G C 
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                 A  L   M++ GV P+ +T+N++++  CK+G  ++   L     + G+  D  +
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQS---EKGLVQDYGS 574

Query: 228 YNTLL 232
           Y +L+
Sbjct: 575 YTSLI 579



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           + D L K      A   + ++ D    P+V  +  ++   C  +  NEA+ LF E+  +G
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++P VV+FN +++  CK+G +D+   L   M+++ V PD FTY+ L++G C  G+++ A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 246 ELFVSMESMG 255
           +LF+ M   G
Sbjct: 316 KLFLEMCDRG 325


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 21/233 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K +++D    LF R+   GL P+  T+SILI+ FC+ G++      
Sbjct: 365 PNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG ++     P V  + SLI                     K  +P  +TY +++ G C 
Sbjct: 425 LGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++KA  L+ +M  K + P++ T+T+++ G   A    +A +LF EM +  V+PN VT
Sbjct: 485 KGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVT 544

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +NV+++  C+ G M +A   L+ MI+ G+ PD ++Y  L+ G CLTG+ + AK
Sbjct: 545 YNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAK 597



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 22/249 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M ++   P  V+ ++I++    +    DT LS    +   GL P +Y ++ 
Sbjct: 384 DEAELLFDRMGKIGLCPNDVT-YSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNS 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK------------ 117
           LIN  CK G +S    ++  ++     P VVT+TSL+       K+ K            
Sbjct: 443 LINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   T+ T++ GL + G +  A +LF +M + NVKPN VTY  +I G+C   + ++A 
Sbjct: 503 IVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAF 562

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               EM+++G+ P+  ++  ++  LC  G+  EA   +D + +     +   Y  LL GF
Sbjct: 563 EFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGF 622

Query: 236 CLTGRVNHA 244
           C  G++  A
Sbjct: 623 CREGKLEEA 631



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 56/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-- 75
           + + +F  M+      P V + + +L  L K +H+   + LF  + + G+ PD+Y ++  
Sbjct: 174 DGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGV 233

Query: 76  ---------------------------------ILINCFCKMGRVSHGFVVLGRILRSCF 102
                                            +LI+  CK  +V     +   +     
Sbjct: 234 IRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKEL 293

Query: 103 TPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAKE 141
            PDVVT+ +L+  +CK                    P     +++++GL K+G V++A  
Sbjct: 294 KPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALN 353

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  ++ +  V PN+  Y ++I   C   +++EA+ LF  M   G+ PN VT+++++D  C
Sbjct: 354 LVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFC 413

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + GK+D A S L  MI  G++P  + YN+L++G C  G ++ A+ L   M
Sbjct: 414 RRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEM 463



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 49/252 (19%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + +++    K+K     L L K ++  GL PD   ++ +I+   K G     F +   ++
Sbjct: 650 YGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                          + C P+ +TY  +I+GLCK GFV++A+ L  KM+  N  PN VTY
Sbjct: 710 N--------------EGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTY 755

Query: 159 -----------------------------------TSVIRGFCYANDWNEAKRLFIEMMD 183
                                                +IRGFC      EA  L   M+ 
Sbjct: 756 GCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIG 815

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            GV P+ +T+  ++ ELC+   + +A  L + M + G+RPD   YNTL+ G C+ G +  
Sbjct: 816 DGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875

Query: 244 AKELFVSMESMG 255
           A EL   M   G
Sbjct: 876 ATELRNEMLRQG 887



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 105/213 (49%), Gaps = 21/213 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  M+   +K   +     ++  + + G  P+  T++ +IN  CK G V+   ++  ++ 
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMR 744

Query: 99  RSCFTPDVVTF---------------------TSLIKVCKPDAITYNTIIDGLCKQGFVD 137
                P+ VT+                      +++K    +  TYN +I G C+QG ++
Sbjct: 745 PGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRME 804

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A EL  +M    V P+ +TYT++I   C  ND  +A  L+  M ++G++P+ V +N ++
Sbjct: 805 EASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
              C  G+M +A+ L + M++ G++P+  T  T
Sbjct: 865 HGCCVAGEMGKATELRNEMLRQGLKPNTETSET 897



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F  +L  L +       + LF  +    + P+  T++++I  +C+ G +S  F  
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEF 564

Query: 94  LGRILRSCFTPDVVTFTSLI------------KV---------CKPDAITYNTIIDGLCK 132
           L  ++     PD  ++  LI            KV         C+ + I Y  ++ G C+
Sbjct: 565 LNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +++A  +   M  + V  ++V Y  +I G     D      L  EM D+G++P+ V 
Sbjct: 625 EGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVI 684

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  ++D   K G   EA  + DLMI  G  P+  TY  +++G C  G VN A+ L   M
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKM 743



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +++N+++    +    +    L  R+   G+ PD  T++ +I+  C+   V     +   
Sbjct: 788 ATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNS 847

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +                K  +PD + YNT+I G C  G + KA EL  +M  + +KPN  
Sbjct: 848 MTE--------------KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTE 893

Query: 157 TYTSVI 162
           T  + I
Sbjct: 894 TSETTI 899



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P V T + ++  L K      A  L D MI  G+RPD + Y  ++   C    ++ AKE+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 248 FVSMESMGC 256
            V ME+ GC
Sbjct: 250 IVQMEATGC 258


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D ML      P V ++ ++L  + K+  +   + +   + + G  P++ T++++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+ GRV      L R+    F PD V++T+++K                      C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQ 341

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V++G C A  W +AK L  EM+ +   PN VTFN  +  LC
Sbjct: 342 FLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILC 401

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +++A+ L++ M +HG   +  TYN L++GFC+ GRV+ A ELF SM
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++    +    D    L   + S  + PD YT++ +I   C  GRV     +L 
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +L     P VVT+T L+                     K C P+ +TYN II+G+C++G
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD A+E   ++     +P+ V+YT+V++G C A  W + + LF EMM++   PN VTF+
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++   C+ G ++ A  +L+ M  HG   +    N +++  C  GRV+ A +   +M S 
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 255 GC 256
           GC
Sbjct: 350 GC 351



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 105/229 (45%), Gaps = 20/229 (8%)

Query: 30  HPSPPPVSS---FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
            P  P  SS    N  L  L           L  R  S G  PD+Y  + LI   C+ GR
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            S    VL    RS    DV                YNT++ G C+ G +D A+ L   M
Sbjct: 94  TSDAARVLRAAERSGTAVDV--------------FAYNTLVAGYCRYGQLDAARRLIASM 139

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
               V P+  TYT +IRG C      EA  L  +M+ +G QP+VVT+ V+++ +CK+   
Sbjct: 140 P---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGF 196

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +A  +LD M   G  P+  TYN +++G C  GRV+ A+E    + S G
Sbjct: 197 GQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 17/223 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN  +  L +    +    L ++++  G   ++ T++ L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +               F S+   CKP+ ITY T++ GLC    +D A EL  +M  K+  
Sbjct: 447 L---------------FYSM--PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVT+  ++  FC     +EA  L  +MM+ G  PN++T+N ++D +  +   +EA  L
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALEL 549

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  ++ +GV PD  TY++++       RV  A ++F  ++ +G
Sbjct: 550 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 592



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++         D+ L LF    S    P+  T++ L+   C   R+     +L 
Sbjct: 425 IVTYNALVNGFCVQGRVDSALELFY---SMPCKPNTITYTTLLTGLCNAERLDAAAELLA 481

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +L+    P+VVTF  L+                       C P+ ITYNT++DG+    
Sbjct: 482 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDC 541

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL   +    V P++VTY+S+I      +   EA ++F  + D G++P  V +N
Sbjct: 542 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK    D A      M+ +G  P+  TY TL++G      +   ++L   + S 
Sbjct: 602 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 661

Query: 255 G 255
           G
Sbjct: 662 G 662



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD      +I  LC++G    A  +    +      +V  Y +++ G+C     + A+RL
Sbjct: 76  PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 135

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M    V P+  T+  I+  LC  G++ EA SLLD M+  G +P   TY  LL+  C 
Sbjct: 136 IASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 192

Query: 238 TGRVNHAKELFVSMESMGC 256
           +     A E+   M + GC
Sbjct: 193 STGFGQAMEVLDEMRAKGC 211



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 93/212 (43%), Gaps = 21/212 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++  +L  L   +  D    L   +      P++ T ++L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
             ++ +++    TP+++T+ +L+                         PD +TY++II  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L ++  V++A ++F  ++D  ++P  V Y  ++   C   + + A   F  M+  G  PN
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            +T+  +++ L     + E   LL  +   GV
Sbjct: 632 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M+  H   P + ++N +L  +  + + +  L L   L S G+ PD+ T+S 
Sbjct: 509 DEAIELVEQMME-HGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I    +  RV     +            +V    +    +P A+ YN I+  LCK+   
Sbjct: 568 IIGVLSREDRVEEAIKMF----------HIVQDLGM----RPKAVIYNKILLALCKRCNT 613

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           D A + F  M      PN +TY ++I G    +   E + L  E+  +GV
Sbjct: 614 DGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 133/254 (52%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD ML      P V ++NI++  L    H    LS+ + +   G  P++ T++ L+  F 
Sbjct: 138 FDSMLS-DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAI 121
           + G V     ++G +L     P++VTF S++  +CK                    PD +
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YNT++ G CK G   +A  +F +M  K + P+VVT+TS+I   C A +   A  L  +M
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            ++G+Q N VTF  ++D  CK G +D+A   +  M Q  ++P    YN L++G+C+ GR+
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRM 376

Query: 242 NHAKELFVSMESMG 255
           + A+EL   ME+ G
Sbjct: 377 DEARELLHEMEAKG 390



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +FD M+R   +P  VS +N ++G   K       LS+F  +   G+ PD+ T + 
Sbjct: 237 EDARKVFDEMMREGLAPDGVS-YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTS 295

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVC- 116
           LI+  CK G +     ++ ++       + VTFT+LI                   + C 
Sbjct: 296 LIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCR 355

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP  + YN +I+G C  G +D+A+EL  +M+ K +KP+VVTY+++I  +C   D + A 
Sbjct: 356 IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAF 415

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+++GV P+ +T++ ++  LC+  ++ +A  L   MI+ G++PD FTY +L+DG 
Sbjct: 416 ELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 475

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G V  A  L   M   G
Sbjct: 476 CKEGNVERALSLHDKMVKAG 495



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 24/257 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M +     P V +F  ++  + K  + +  ++L +++   GL  +  T + 
Sbjct: 272 HEALSVFAEMTQ-KGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTA 330

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC-FTPDVVTFTSLI---------------------K 114
           LI+ FCK G +    + + R +R C   P VV + +LI                     K
Sbjct: 331 LIDGFCKKGFLDDALLAV-RGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 389

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KPD +TY+TII   CK      A EL  +M +K V P+ +TY+S+IR  C     ++A
Sbjct: 390 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDA 449

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  M+  G+QP+  T+  ++D  CK G ++ A SL D M++ GV PD  TY+ L++G
Sbjct: 450 HVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLING 509

Query: 235 FCLTGRVNHAKELFVSM 251
              + R   A++L   +
Sbjct: 510 LSKSARAMEAQQLLFKL 526



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    K    D  L   + +    + P +  ++ LIN +C +GR+     +L  +
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 386

Query: 98  LRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT++++I   CK                    PDAITY+++I  LC++  +
Sbjct: 387 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRL 446

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  LF  M    ++P+  TYTS+I G C   +   A  L  +M+  GV P+VVT++V+
Sbjct: 447 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVL 506

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           ++ L K+ +  EA  LL  +      P    Y+                LL GFC+ G +
Sbjct: 507 INGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 566

Query: 242 NHAKELFVSM 251
           N A +++ SM
Sbjct: 567 NEADKVYQSM 576



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + YN ++  L        A+  F  M    V PNV TY  +IR  C      EA  +
Sbjct: 114 PSVLAYNAVLLALSDASLTS-ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M   G  PNVVT+N ++    + G++D A  L+ +M+  G++P+  T+N++++G C 
Sbjct: 173 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCK 232

Query: 238 TGRVNHAKELFVSMESMG 255
            G++  A+++F  M   G
Sbjct: 233 AGKMEDARKVFDEMMREG 250



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 2/218 (0%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+++   P   +  +++ G   K  + +  LSL  ++   G+ PD+ T+S+
Sbjct: 447 SDAHVLFKNMIKLGLQPDEFTYTSLIDG-HCKEGNVERALSLHDKMVKAGVLPDVVTYSV 505

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGF 135
           LIN   K  R      +L ++      P    + +L+  C K +  +   ++ G C +G 
Sbjct: 506 LINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 565

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A +++  M D+N   +   Y+ +I G C A +  +A     +M+ +G  PN  +   
Sbjct: 566 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++  L +NG + EA  ++  ++      DA     L+D
Sbjct: 626 LIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALID 663



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+V+ +N ++  L  +  +  A    D M+  GV P+ +TYN L+   C  G    A
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 245 KELFVSMESMGC 256
             +   M   GC
Sbjct: 170 LSILRDMRGAGC 181


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D ML      P V ++ ++L  + K+  +   + +   + + G  P++ T++++
Sbjct: 194 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 252

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+ GRV      L R+    F PD V++T+++K                      C
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A +
Sbjct: 313 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQ 372

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V++G C A  W +AK L  EM+ +   PN VTFN  +  LC
Sbjct: 373 FLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILC 432

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +++A+ L++ M +HG   +  TYN L++GFC+ GRV+ A ELF SM
Sbjct: 433 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 482



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++    +    D    L   + S  + PD YT++ +I   C  GRV     +L 
Sbjct: 144 VFAYNTLVAGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLD 200

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +L     P VVT+T L+                     K C P+ +TYN II+G+C++G
Sbjct: 201 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 260

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD A+E   ++     +P+ V+YT+V++G C A  W + + LF EMM++   PN VTF+
Sbjct: 261 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++   C+ G ++ A  +L+ M  HG   +    N +++  C  GRV+ A +   +M S 
Sbjct: 321 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 380

Query: 255 GC 256
           GC
Sbjct: 381 GC 382



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 17/198 (8%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           L  R  S G  PD+Y  + LI   C+ GR S    VL    RS    DV           
Sbjct: 96  LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDV----------- 144

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                YNT++ G C+ G +D A+ L   M    V P+  TYT +IRG C      EA  L
Sbjct: 145 ---FAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSL 198

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M+ +G QP+VVT+ V+++ +CK+    +A  +LD M   G  P+  TYN +++G C 
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 258

Query: 238 TGRVNHAKELFVSMESMG 255
            GRV+ A+E    + S G
Sbjct: 259 EGRVDDAREFLNRLSSYG 276



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 17/223 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN  +  L +    +    L ++++  G   ++ T++ L+N FC  GRV     
Sbjct: 418 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +               F S+   CKP+ ITY T++ GLC    +D A EL  +M  K+  
Sbjct: 478 L---------------FYSM--PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 520

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVT+  ++  FC     +EA  L  +MM+ G  PN++T+N ++D + K+   +EA  L
Sbjct: 521 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALEL 580

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  ++ +GV PD  TY++++       RV  A ++F  ++ +G
Sbjct: 581 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 623



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++         D+ L LF    S    P+  T++ L+   C   R+     +L 
Sbjct: 456 IVTYNALVNGFCVQGRVDSALELFY---SMPCKPNTITYTTLLTGLCNAERLDAAAELLA 512

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +L+    P+VVTF  L+                       C P+ ITYNT++DG+ K  
Sbjct: 513 EMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 572

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL   +    V P++VTY+S+I      +   EA ++F  + D G++P  V +N
Sbjct: 573 NSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 632

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK    D A      M+ +G  P+  TY TL++G      +   ++L   + S 
Sbjct: 633 KILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSR 692

Query: 255 G 255
           G
Sbjct: 693 G 693



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD      +I  LC++G    A  +    +      +V  Y +++ G+C     + A+RL
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M    V P+  T+  I+  LC  G++ EA SLLD M+  G +P   TY  LL+  C 
Sbjct: 167 IASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 223

Query: 238 TGRVNHAKELFVSMESMGC 256
           +     A E+   M + GC
Sbjct: 224 STGFGQAMEVLDEMRAKGC 242



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 21/212 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++  +L  L   +  D    L   +      P++ T ++L++ FC+ G +   
Sbjct: 483 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 542

Query: 91  FVVLGRILRSCFTPDVVTFTSLI----KVC-----------------KPDAITYNTIIDG 129
             ++ +++    TP+++T+ +L+    K C                  PD +TY++II  
Sbjct: 543 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L ++  V++A ++F  ++D  ++P  V Y  ++   C   + + A   F  M+  G  PN
Sbjct: 603 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 662

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            +T+  +++ L     + E   LL  +   GV
Sbjct: 663 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M+  H   P + ++N +L  + K+ + +  L L   L S G+ PD+ T+S 
Sbjct: 540 DEAIELVEQMME-HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 598

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I    +  RV     +            +V    +    +P A+ YN I+  LCK+   
Sbjct: 599 IIGVLSREDRVEEAIKMF----------HIVQDLGM----RPKAVIYNKILLALCKRCNT 644

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           D A + F  M      PN +TY ++I G    +   E + L  E+  +GV
Sbjct: 645 DGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A RL      +G  P+V     ++  LC+ G+  +A+ +L    + G   D F YNTL+ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 234 GFCLTGRVNHAKELFVSM 251
           G+C  G+++ A+ L  SM
Sbjct: 153 GYCRYGQLDAARRLIASM 170


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V  FN+++  L K    +    LF  +   GL P + + + LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF- 280

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
              R+ R      V           PD  TY+ +I+GLCK+G +D A +LFL+M D+ + 
Sbjct: 281 ---RLKRFMMENRVF----------PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     +    ++ +M+ +GV+P+V+T+N +++ LCK G + EA  L
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M Q G++PD FTY  L+DG C  G +  A E+   M   G
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K+ + D    L + +    +FPD++T+S+LIN  CK G++     +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ VTFT+LI                     K  KPD ITYNT+I+GLCK
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +AK+L ++M  + +KP+  TYT +I G C   D   A  +  EM+ +G++ + V 
Sbjct: 378 VGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVA 437

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   C+ G++ EA   L  M++ G++PD  TY  ++ GFC  G V    +L   M+
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497

Query: 253 SMG 255
             G
Sbjct: 498 CDG 500



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LIN  C  GR   G  +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++LR    PDV+T+ +LI                     +  KPD  TY  +IDG CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E+  +M  + ++ + V +T++I GFC      EA+R   EM++ G++P+  T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++   CK G +     LL  M   G  P   TYN LL+G C  G++ +A  L  +M 
Sbjct: 473 YTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAML 532

Query: 253 SMG 255
           ++G
Sbjct: 533 NLG 535



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           + D L K      A   + ++ D    P+V  +  ++   C  +  NEA+ LF E+  +G
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++P VV+FN +++  CK+G +D+   L   M+++ V PD FTY+ L++G C  G+++ A 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDAN 315

Query: 246 ELFVSMESMG 255
           +LF+ M   G
Sbjct: 316 KLFLEMCDRG 325



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 41/81 (50%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++ +++    K     T   L K +   G  P + T+++L+N  CK G++ +  ++
Sbjct: 468 PDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANML 527

Query: 94  LGRILRSCFTPDVVTFTSLIK 114
           L  +L     PD +T+  L++
Sbjct: 528 LDAMLNLGVVPDDITYNILLE 548


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 134/241 (55%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K++  +  L +F  + + G+ P+++T++ LI   C   R      +
Sbjct: 43  PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  ++     P++VTF+ LI + CK                    P+ +TY+++++G   
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  V +A++LF  M  K  KP+V +Y  +I G+C A    EAK+LF EM+ QG+ P++V+
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 222

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LC+ G++ EA  L   M+ +G  PD  TY+ LLDGFC  G +  A  LF +M+
Sbjct: 223 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 282

Query: 253 S 253
           S
Sbjct: 283 S 283



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 132/243 (54%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         LFK++   G  PD+ T+S +I+  CK  RV+    +
Sbjct: 8   PDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 67

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +     +P++ T+ SLI+ +C                     P+ +T++ +I+  CK
Sbjct: 68  FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 127

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +A+ +   M +  V+PNVVTY+S++ G+    +  EA++LF  M+ +G +P+V +
Sbjct: 128 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFS 187

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N++++  CK  ++ EA  L + MI  G+ PD  +YNTL+DG C  GR+  A +LF +M 
Sbjct: 188 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 247

Query: 253 SMG 255
           + G
Sbjct: 248 TNG 250



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 14/193 (7%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
           + G  PD++T++ +IN  CK+G       +  ++  +               C+PD +TY
Sbjct: 3   ARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAG--------------CQPDVVTY 48

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           +TIID LCK   V++A ++F  MK K + PN+ TY S+I+G C  + W EA  +  EMM 
Sbjct: 49  STIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS 108

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             + PN+VTF+++++  CK G + EA  +L  M + GV P+  TY++L++G+ L   V  
Sbjct: 109 LNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFE 168

Query: 244 AKELFVSMESMGC 256
           A++LF  M + GC
Sbjct: 169 ARKLFDVMITKGC 181



 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL IF YM +     P + ++N ++  L     +    ++   + S  + P++ T S+
Sbjct: 62  NEALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN FCK G V     VL  +      P+VVT++SL+                     K 
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKPD  +YN +I+G CK   + +AK+LF +M  + + P++V+Y ++I G C      EA 
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M+  G  P++ T+++++D  CK G + +A  L   M    ++P+   YN L+D  
Sbjct: 241 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 300

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C +  +  A++LF  +   G
Sbjct: 301 CKSRNLKEARKLFSELFVQG 320



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  +  +P+V TYT++I G C   +   A  LF +M + G QP+VVT++ I+D LCK+ +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++EA  +   M   G+ P+ FTYN+L+ G C   R   A  +   M S+
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 109



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G QP+V T+  I++ LCK G+   A+ L   M + G +PD  TY+T++D  C   R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 241 VNHAKELFVSMESMG 255
           VN A ++F  M++ G
Sbjct: 61  VNEALDIFSYMKAKG 75



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+  G +PD  TY T+++G C  G    A  LF  M   GC
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGC 41


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 14/231 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L+     P + +FN +L    K       L + + +    + PD+ T++IL+N  C++G
Sbjct: 261 ILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 320

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           +V   F +L  I+R  + PDV+ +TSL+              DGLCK G +++A +L  +
Sbjct: 321 QVQVAFYLLEEIVRQGYIPDVIAYTSLV--------------DGLCKSGEIEEAHKLVKE 366

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  +  +  VV Y+S++ G+C A + ++A+ +  EM+   + P + T+N+++  L K+G 
Sbjct: 367 MSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 426

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + +A SL+  ++  G  PD  TYNTL+DG C   RV  A +L   M S GC
Sbjct: 427 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGC 477



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 23/259 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+  FD+          V S+N +L  L K+ H+     ++K L  +G  P+L T  
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI   CK G+       L  +      PDV  F  LI                      
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYANDWN 172
             KP+ +TYNT+I GLCK G ++KA+EL  +M  K  K  P++VTY ++I  F  A+   
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIR 186

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA     +M   G+ P+V+T N+++  +CK+G ++EA  +LD M   G  PD  TYN+++
Sbjct: 187 EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSII 246

Query: 233 DGFCLTGRVNHAKELFVSM 251
              C+ G+V  A E+  +M
Sbjct: 247 HALCVAGKVVEAAEILKTM 265



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K+   +    L K ++  G    +  +S L++ +C+ G V     +
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 94  LGRILRSCFTPDVVTFT----SLIK---VCK--------------PDAITYNTIIDGLCK 132
           L  ++     P + T+      LIK   + K              PD +TYNT+IDGLCK
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V +A +L  +M  +   PN VT  SV+ G C     ++A  L +EM  +   PNVV 
Sbjct: 459 ANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVV 518

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK+ +MD+A  +LD M   GV  D F Y  L+      GRV  A  ++  M 
Sbjct: 519 YTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMV 578

Query: 253 SMG 255
           + G
Sbjct: 579 ARG 581



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 14/198 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+ ++NI+LG L K+      +SL   L + G  PD+ T++ LI+  CK  RV      
Sbjct: 409 PPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVRE---- 464

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +C   D +      + C P+ +T  +++ GLC+ G VD A  L ++M  K   P
Sbjct: 465 ------ACDLADEMAS----RGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 514

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV YTS+I G C ++  ++A  +   M  QGV  +   +  ++  +   G++ EA ++ 
Sbjct: 515 NVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMY 574

Query: 214 DLMIQHGVRPDAFTYNTL 231
           D M+  G  PD  T  TL
Sbjct: 575 DEMVARGFLPDGSTSKTL 592



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D  +YN ++D L K G   +  +++  +      PN+VT+  +IRG C A     A  
Sbjct: 24  KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALE 83

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               + +  V P+V  FNV++  L K+G  D+A  L + M    V+P+  TYNT++ G C
Sbjct: 84  FLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLC 143

Query: 237 LTGRVNHAKELFVSMESMG 255
            +G +  A+EL   M   G
Sbjct: 144 KSGNLEKARELLEEMIRKG 162


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 14/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D M R    PP V+  N ++  L K   +   L  FK +  T   PD+ T +I
Sbjct: 47  DQAYELLDEM-RDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNI 105

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   K GRV   F    +I  S  T            C P+ +TY T+I+GLCK G +
Sbjct: 106 LVDALVKSGRVEEAF----QIFESMHTSSQ---------CLPNVVTYTTVINGLCKDGKL 152

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A EL   M +    PNV+TY+ ++ G C A   ++   L  EM  +G QP+V+ +N +
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LCK+ ++DEA  L+ LMI+ G  P   TYN+L++ FC + +V+ A  L   M   GC
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  IF+ M       P V ++  ++  L K+   D  + L   +N TG  P++ T+S+
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CK GR   GF +L  + R  F PDV              I YNT+++GLCK   +
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDV--------------IMYNTLLNGLCKSRRL 222

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A EL   M      P VVTY S++  FC +   + A RL   M ++G  P+V+ +N +
Sbjct: 223 DEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTV 282

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN------HAKELFVS 250
           +  LC++ ++D+A +LL  M+     PD  TY+T++DG C   RV+       A E+   
Sbjct: 283 IAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEM 342

Query: 251 MESMGC 256
           M+  GC
Sbjct: 343 MKQTGC 348



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 27/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N +L  L K++  D  L L + +  +G +P + T++ L+  FC+  +V   F +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
           +  +      PDV+ + ++I                       C PD ITY+TIIDGLCK
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323

Query: 133 QGFVDK------AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
              VD       A E+   MK     PN  TY  VI G C A    +A  L   M+D  V
Sbjct: 324 DWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV 383

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P++ +F++++  LCK+  +D A  +  +M +   +P+   Y  L+DG    G V+ A  
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVR 443

Query: 247 LFVSM 251
           +F  M
Sbjct: 444 VFELM 448



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 9/219 (4%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N ++  L ++   D   +L K++ +    PD+ T+S +I+  CK  RV   + 
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW- 331

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
              ++  +C   +++  T     C P+A TY  +I+GLC+     +A  L  +M D  V 
Sbjct: 332 ---KLEAACEILEMMKQTG----CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVV 384

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P++ +++ VI   C ++D + A ++F  M ++  +PN V +  ++D L K G++D+A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +LM++   RP   TYN++LDG C  GR+  A  +   M
Sbjct: 445 FELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGM 482



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TY ++I GLCK G +D+A EL  +M+D+ + P V  +  VIRG C A  + +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-IQHGVRPDAFTYNTLLDG 234
             F  +      P+++TFN+++D L K+G+++EA  + + M       P+  TY T+++G
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVING 145

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G+++ A EL   M   GC
Sbjct: 146 LCKDGKLDRAIELLDLMNETGC 167



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA C    M++    PP   ++ +++  L + +     L+L +R+  + + PDL + S++
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   CK   +   + + G +                + CKP+ + Y  +IDGL K G VD
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSE--------------RECKPNPVAYAALIDGLSKGGEVD 439

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  +F  M + + +P V TY SV+ G C      EA R+   M+ +   P+  ++  ++
Sbjct: 440 KAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             LC+   ++EA  L   +   G   +   YN L++  C   R++ A
Sbjct: 499 RGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDA 545



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N  ++ L + G   +A +LF   +++   PN  TY S+I G C A   ++A  L  EM D
Sbjct: 2   NCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G+ P V   N ++  LCK G+  +A      +      PD  T+N L+D    +GRV  
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 244 AKELFVSMES 253
           A ++F SM +
Sbjct: 119 AFQIFESMHT 128


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN ++  L      +  L L +++   G+ PD+YT +ILIN  CK+G       +
Sbjct: 262 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 321

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+ +LI                       C    ITYNTIIDGLCK
Sbjct: 322 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  N +T+ ++I G C     ++A  L  +M+ +G+QPN +T
Sbjct: 382 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A ++   M 
Sbjct: 442 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 501

Query: 253 SMG 255
             G
Sbjct: 502 IKG 504



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D M++     P V ++NI++ CL KN   +    +  ++   G  PD+ T + LI
Sbjct: 213 ALKVMDVMVQ-EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 271

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C   R+     +  ++     +PDV TF  LI                       C 
Sbjct: 272 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 331

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYNT+ID LC  G + KA +L   M+      + +TY ++I G C      EA+ +
Sbjct: 332 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 391

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+  N +TFN ++D LCK+ K+D+A  L++ MI  G++P+  TYN++L  +C 
Sbjct: 392 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 451

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A ++  +M + G
Sbjct: 452 QGDIKKAADILETMTANG 469



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +    +  L +  R+   G      T ++LIN +CK+GRV      
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + + +   F PD +T+ + +  +C+                    PD  TYN +++ LCK
Sbjct: 182 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M D+   P++ T+ ++I   C  N   EA  L  ++  +GV P+V T
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 301

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYNTL+D  C  G++  A +L   ME
Sbjct: 302 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 361

Query: 253 SMGC 256
           S GC
Sbjct: 362 STGC 365



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       L LF+ + ++G  PD  T++ LI+  C +G++     +
Sbjct: 297 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 356

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      +T+ ++I  +CK                     +AIT+NT+IDGLCK
Sbjct: 357 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 416

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++PN +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 417 DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 476

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  +L  M   G+RP    YN +L        +  A  LF  M 
Sbjct: 477 YGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMA 536

Query: 253 SMG 255
            +G
Sbjct: 537 EVG 539



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  L +      + S++  + + G+ PD+ T + L+   C+  +V    ++L  + 
Sbjct: 57  YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 116

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C    +T N +I+G CK G V+
Sbjct: 117 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 176

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ +TY + + G C  +    A ++   M+ +G  P+V T+N+++
Sbjct: 177 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 236

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKNG+++EA  +L+ M+  G  PD  T+NTL+   C   R+  A +L
Sbjct: 237 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 286



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 22/245 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL +F+ M     +P  V+ +N ++  L         L L K + STG      T++
Sbjct: 315 PHLALRLFEEMKNSGCTPDEVT-YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 373

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     + + +TF +LI  +CK                 
Sbjct: 374 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE 433

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 434 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 493

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M  +G++P    +N ++  L +   + +A SL   M + G  PDA TY  +  G
Sbjct: 494 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 553

Query: 235 FCLTG 239
            C  G
Sbjct: 554 LCRGG 558



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +T+NT++  LC+   V  A  +  +M  + V P+  T+T++++GF        A R
Sbjct: 86  KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 145

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M++ G     VT NV+++  CK G++++A   +   I  G  PD  TYNT ++G C
Sbjct: 146 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC 205

Query: 237 LTGRVNHAKELFVSMESMG 255
               V HA ++   M   G
Sbjct: 206 QNDHVGHALKVMDVMVQEG 224



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 23/212 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M     S   ++ FN ++  L K+K  D    L  ++ S GL P+  T++ +
Sbjct: 387 EAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +  +CK G +     +L  +  + F  DVVT+ +LI                     K  
Sbjct: 446 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 505

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAK 175
           +P    YN ++  L ++  +  A  LF +M +    P+ +TY  V RG C       EA 
Sbjct: 506 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAF 565

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
              +EM+D+G  P   +F ++ + L   G  D
Sbjct: 566 DFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 597



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 67/128 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + YN +++ L +   +   + ++ +M  + +KP+VVT+ ++++  C A+    A  
Sbjct: 51  QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 110

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM  +GV P+  TF  +M    + G ++ A  +   M++ G      T N L++G+C
Sbjct: 111 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 170

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 171 KLGRVEDA 178



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++ +D    Q   D A +L L        ++ + V Y  ++      +     + ++ EM
Sbjct: 21  HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM 80

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G++P+VVTFN +M  LC+  ++  A  +L+ M   GV PD  T+ TL+ GF   G +
Sbjct: 81  GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSI 140

Query: 242 NHAKELFVSMESMGC 256
             A  +   M  MGC
Sbjct: 141 EAALRVKARMLEMGC 155


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 14/201 (6%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            L +   +   G  PD+ T++I+IN  CKMG +S   VV+   +   + PDV TF     
Sbjct: 382 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF----- 436

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                    NT+IDG CK+  +D A +L  +M +  + P+ +TY SV+ G C A   NE 
Sbjct: 437 ---------NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEV 487

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F EM+ +G  PN +T+N++++  C++ KM+EAS ++  M Q G+ PDA ++NTL+ G
Sbjct: 488 NETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYG 547

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           FC  G +  A  LF  +E  G
Sbjct: 548 FCRNGDLEGAYLLFQKLEEKG 568



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K       +   +R+ + G  PD +T++ +I+ +CK+  V     +
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD VT+ SLI                     K  KPD + YN+++ GLC 
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A ++  +M ++   P++ TY  VI G C   + ++A  +  + + +G  P+V T
Sbjct: 376 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 435

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK  K+D A  L++ M ++G+ PD  TYN++L+G C  G+VN   E F  M 
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495

Query: 253 SMGC 256
             GC
Sbjct: 496 LKGC 499



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L    ++D    ++ R+ + G+ PDL+TH+I +  FC   R      
Sbjct: 85  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 140

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +  R+LR+              +    A+ Y T++ GL   G    A++LF +M   +V 
Sbjct: 141 IALRLLRA--------------LPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF 186

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+  +  V+   C   D  EA  L  +++ +G+  N+ T+N+ +  LC+ G++ EA  L
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 246

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D M  + V PD  TYNTL+ G C       A      M + GC
Sbjct: 247 VDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 289



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 31/170 (18%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------- 166
            C P A  YN I+D L    + D+A +++++M    V P++ T+T  +R FC        
Sbjct: 83  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 142

Query: 167 ----------------------YANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                                 YA+   ++A++LF +M+   V PN+  FN ++  LCK 
Sbjct: 143 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 202

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           G + EA  LL  +IQ G+  + FTYN  + G C  GR+  A  L   M +
Sbjct: 203 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRA 252



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 21/212 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L  L K    + V   F+ +   G  P+  T++ILI  FC+  ++     V
Sbjct: 466 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 525

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           + ++ +    PD V+F +LI                     K     A T+NT+I     
Sbjct: 526 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 585

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +  A+++F +M  K  + +  TY  +I G C   + + A    +EM+ +G  P++ T
Sbjct: 586 KLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMST 645

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           F  +++ L  N ++ +A  ++ +M++ GV P+
Sbjct: 646 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 677



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 24/183 (13%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           HP+P    ++NI++    ++   +    +  +++  GL PD  + + LI  FC+ G +  
Sbjct: 500 HPNP---ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 556

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
            +++  ++    ++    TF +LI                     K  + D+ TY  +ID
Sbjct: 557 AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLID 616

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK   VD+A    ++M  K   P++ T+  VI      +   +A  +   M+  GV P
Sbjct: 617 GSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676

Query: 189 NVV 191
            VV
Sbjct: 677 EVV 679



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y + IR +  A    +A   F  M      P    +N IMD L      D+A  +   M+
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             GV PD  T+   L  FCLT R + A  L  ++   G 
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA 154


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 136/252 (53%), Gaps = 22/252 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  ++  ML    SP  ++   +M GCL   +  + V  LF ++    + PD+YT +IL
Sbjct: 137 DAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAV-GLFNQMLLKNIKPDIYTFNIL 195

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G +     VL  +++    PDV+T+ SL+                     +  
Sbjct: 196 VDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGV 255

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  +Y+ +I+GLCK   VD+A  L  +M  K++ PN VTY+S+I G   +    +A  
Sbjct: 256 TPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWD 315

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM ++G   +V+T+N ++D LCKN ++D+A +LL  +   G++PD +TY  L+DG C
Sbjct: 316 LVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLC 375

Query: 237 LTGRVNHAKELF 248
             GR+  A+E++
Sbjct: 376 KNGRLKDAQEVY 387



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 27/254 (10%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG--- 85
           M+   P +  F  +   L K  H+ TV+SL  ++   G+  DL   +IL+NCFC +G   
Sbjct: 1   MNNPTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVC 60

Query: 86  ---RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAI 121
              +V         ++   F  + V++ +LI  +CK                    P+ +
Sbjct: 61  LNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVV 120

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            Y+TII  LCK   V  A +L+ +M  K + P+V+TY +++ G        EA  LF +M
Sbjct: 121 MYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQM 180

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + + ++P++ TFN+++D LCK G+M +A ++L +MI+  V PD  TYN+L+DG+ L  + 
Sbjct: 181 LLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQE 240

Query: 242 NHAKELFVSMESMG 255
           N A  +F +M   G
Sbjct: 241 NKATFVFNTMARRG 254



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++  L K       + + + ++   + P++  +S +I   CK   V   F +  ++
Sbjct: 86  SYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQM 145

Query: 98  LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFV 136
           L    +PDV+T+ +L+  C                     KPD  T+N ++DGLCK+G +
Sbjct: 146 LLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEM 205

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA+ +   M  ++V P+V+TY S++ G+      N+A  +F  M  +GV P+V +++V+
Sbjct: 206 KKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVM 265

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK   +DEA +LL  M    + P+  TY++L+DG   +GR+  A +L   M + G
Sbjct: 266 INGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRG 324



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 36/226 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  +F+ M R     P V S+++M+  L K K  D  ++L K ++S  + P+  T+S 
Sbjct: 241 NKATFVFNTMAR-RGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSS 299

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   K GR+   + ++  +       DV              ITYN+++D LCK   V
Sbjct: 300 LIDGLHKSGRIFDAWDLVNEMHNRGQPADV--------------ITYNSLLDALCKNHQV 345

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------------------YAND--WNEAK 175
           DKA  L  K+KD+ ++P++ TYT ++ G C                   Y  D  +++A 
Sbjct: 346 DKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKAL 405

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            L  +M D G  PN VTF +++  L +N   D+A  LL  MI  G+
Sbjct: 406 SLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 24/241 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    ++  ++  R+   G  PD+ TH+I+I  FC  G++     V
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 94  LGRILR--SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
              +L+  +C  P ++T+T LI+                       +PD  TYN I  GL
Sbjct: 102 FEELLKDNNC-KPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGL 160

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+G VD+A E    +  +  KP+V+TY  ++R       W+E ++   E+  +G +PNV
Sbjct: 161 CKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNV 220

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+++++  LC++GK++E+ +L+ +M + G+ PDA+ Y+ L+  FC  G+++ A E    
Sbjct: 221 VTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDC 280

Query: 251 M 251
           M
Sbjct: 281 M 281



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 14/238 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ +L+ +   P + ++ I++         D  L L   + S GL PD +T++++ 
Sbjct: 98  ALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVIT 157

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
              CK G+V   F  + R L S             + CKPD ITYN ++  L  QG  D+
Sbjct: 158 RGLCKEGKVDRAFEFV-RTLNS-------------RGCKPDVITYNILLRALLNQGKWDE 203

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
            ++   ++  +  +PNVVTY+ +I   C      E+  L   M ++G+ P+   ++ ++ 
Sbjct: 204 GEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIA 263

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+ GK+D A   LD MI  G  PD   YNT++   C  G  +HA E+F  ++ +GC
Sbjct: 264 AFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGC 321



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI+L  L     +D        + S G  P++ T+SILI+  C+ G++     +
Sbjct: 183 PDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNL 242

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           +  +     TPD   +  LI   C+                    PD + YNTI+  LCK
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCK 302

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A E+F K+ +    PNV +Y +++     + D   A  +  +M+ +G+ P+V+T
Sbjct: 303 NGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVIT 362

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC++G +DEA  LL  M+    +P+  +Y T+L G C   R++ A E+  +M 
Sbjct: 363 YNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMI 422

Query: 253 SMGC 256
             GC
Sbjct: 423 ENGC 426



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 37/176 (21%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD I    +I G      +DKA  + + + +K+ KP+V  Y +VI GFC AN    AK 
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRV-MGILEKHGKPDVFAYNAVISGFCKANRIESAKT 65

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGK------------------------------- 205
           +   M  +G  P+VVT N+++   C  GK                               
Sbjct: 66  VLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAY 125

Query: 206 -----MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                +DEA  LLD M+  G+ PD FTYN +  G C  G+V+ A E   ++ S GC
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGC 181



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP VSS+N ML  L  +      L +  ++ S G+ PD+ T++ LI+C C+ G V     
Sbjct: 322 PPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIG 381

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +L   F P++V              +Y T++ GLCK   +D A E+   M +   +
Sbjct: 382 LLADMLSGRFQPNIV--------------SYKTVLLGLCKAHRIDDAIEVLAAMIENGCQ 427

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRL 177
           PN  TYT +I G  ++    +A  L
Sbjct: 428 PNETTYTLLIEGIGFSGSRTQAMEL 452



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K+ +P+V+  T +I+GF  + + ++A R+ + ++++  +P+V  +N ++   CK  +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRV-MGILEKHGKPDVFAYNAVISGFCKANR 59

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ A ++LD M + G  PD  T+N ++  FC  G+++ A ++F
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVF 102


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN ++  L      +  L L +++   G+ PD+YT +ILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+ +LI                       C    ITYNTIIDGLCK
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  N +T+ ++I G C     ++A  L  +M+ +G+QPN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A ++   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 253 SMG 255
             G
Sbjct: 594 IKG 596



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D M++     P V ++NI++ CL KN   +    +  ++   G  PD+ T + LI
Sbjct: 305 ALKVMDVMVQ-EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C   R+     +  ++     +PDV TF  LI                       C 
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYNT+ID LC  G + KA +L   M+      + +TY ++I G C      EA+ +
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+  N +TFN ++D LCK+ K+D+A  L++ MI  G++P+  TYN++L  +C 
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A ++  +M + G
Sbjct: 544 QGDIKKAADILETMTANG 561



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +    +  L +  R+   G      T ++LIN +CK+GRV      
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + + +   F PD +T+ + +  +C+                    PD  TYN +++ LCK
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M D+   P++ T+ ++I   C  N   EA  L  ++  +GV P+V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYNTL+D  C  G++  A +L   ME
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 253 SMGC 256
           S GC
Sbjct: 454 STGC 457



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       L LF+ + ++G  PD  T++ LI+  C +G++     +
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      +T+ ++I  +CK                     +AIT+NT+IDGLCK
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++PN +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 509 DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  +L  M   G+RP    YN +L        +  A  LF  M 
Sbjct: 569 YGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMA 628

Query: 253 SMG 255
            +G
Sbjct: 629 EVG 631



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  L +      + S++  + + G+ PD+ T + L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C    +T N +I+G CK G V+
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ +TY + + G C  +    A ++   M+ +G  P+V T+N+++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKNG+++EA  +L+ M+  G  PD  T+NTL+   C   R+  A +L
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 22/245 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL +F+ M     +P  V+ +N ++  L         L L K + STG      T++
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVT-YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     + + +TF +LI  +CK                 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE 525

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M  +G++P    +N ++  L +   + +A SL   M + G  PDA TY  +  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 235 FCLTG 239
            C  G
Sbjct: 646 LCRGG 650



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +T+NT++  LC+   V  A  +  +M  + V P+  T+T++++GF        A R
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M++ G     VT NV+++  CK G++++A   +   I  G  PD  TYNT ++G C
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC 297

Query: 237 LTGRVNHAKELFVSMESMG 255
               V HA ++   M   G
Sbjct: 298 QNDHVGHALKVMDVMVQEG 316



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 23/213 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +FD M     S   ++ FN ++  L K+K  D    L  ++ S GL P+  T++ 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++  +CK G +     +L  +  + F  DVVT+ +LI                     K 
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEA 174
            +P    YN ++  L ++  +  A  LF +M +    P+ +TY  V RG C       EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
               +EM+D+G  P   +F ++ + L   G  D
Sbjct: 657 FDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 67/128 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + YN +++ L +   +   + ++ +M  + +KP+VVT+ ++++  C A+    A  
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM  +GV P+  TF  +M    + G ++ A  +   M++ G      T N L++G+C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 263 KLGRVEDA 270



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++ +D    Q   D A +L L        ++ + V Y  ++      +     + ++ EM
Sbjct: 113 HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM 172

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G++P+VVTFN +M  LC+  ++  A  +L+ M   GV PD  T+ TL+ GF   G +
Sbjct: 173 GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSI 232

Query: 242 NHAKELFVSMESMGC 256
             A  +   M  MGC
Sbjct: 233 EAALRVKARMLEMGC 247


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN ++  L      +  L L +++   G+ PD+YT +ILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+ +LI                       C    ITYNTIIDGLCK
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  N +T+ ++I G C     ++A  L  +M+ +G+QPN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A ++   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 253 SMG 255
             G
Sbjct: 594 IKG 596



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D M++     P V ++NI++ CL KN   +    +  ++   G  PD+ T + LI
Sbjct: 305 ALKVMDVMVQ-EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C   R+     +  ++     +PDV TF  LI                       C 
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYNT+ID LC  G + KA +L   M+      + +TY ++I G C      EA+ +
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+  N +TFN ++D LCK+ K+D+A  L++ MI  G++P+  TYN++L  +C 
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A ++  +M + G
Sbjct: 544 QGDIKKAADILETMTANG 561



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +    +  L +  R+   G      T ++LIN +CK+GRV      
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + + +   F PD +T+ + +  +C+                    PD  TYN +++ LCK
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M D+   P++ T+ ++I   C  N   EA  L  ++  +GV P+V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYNTL+D  C  G++  A +L   ME
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 253 SMGC 256
           S GC
Sbjct: 454 STGC 457



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       L LF+ + ++G  PD  T++ LI+  C +G++     +
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      +T+ ++I  +CK                     +AIT+NT+IDGLCK
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++PN +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 509 DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  +L  M   G+RP    YN +L        +  A  LF  M 
Sbjct: 569 YGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMA 628

Query: 253 SMG 255
            +G
Sbjct: 629 EVG 631



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  L +      + S++  + + G+ PD+ T + L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMS 208

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C    +T N +I+G CK G V+
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ +TY + + G C  +    A ++   M+ +G  P+V T+N+++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKNG+++EA  +L+ M+  G  PD  T+NTL+   C   R+  A +L
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 22/245 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL +F+ M     +P  V+ +N ++  L         L L K + STG      T++
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVT-YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     + + +TF +LI  +CK                 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE 525

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M  +G++P    +N ++  L +   + +A SL   M + G  PDA TY  +  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 235 FCLTG 239
            C  G
Sbjct: 646 LCRGG 650



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +T+NT++  LC+   V  A  +  +M  + V P+  T+T++++GF        A R
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M++ G     VT NV+++  CK G++++A   +   I  G  PD  TYNT ++G C
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC 297

Query: 237 LTGRVNHAKELFVSMESMG 255
               V HA ++   M   G
Sbjct: 298 QNDHVGHALKVMDVMVQEG 316



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 23/213 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +FD M     S   ++ FN ++  L K+K  D    L  ++ S GL P+  T++ 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++  +CK G +     +L  +  + F  DVVT+ +LI                     K 
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEA 174
            +P    YN ++  L ++  +  A  LF +M +    P+ +TY  V RG C       EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
               +EM+D+G  P   +F ++ + L   G  D
Sbjct: 657 FDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 67/128 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + YN +++ L +   +   + ++ +M  + +KP+VVT+ ++++  C A+    A  
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVI 202

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM  +GV P+  TF  +M    + G ++ A  +   M++ G      T N L++G+C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 263 KLGRVEDA 270



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++ +D    Q   D A +L L        ++ + V Y  ++      +     + ++ EM
Sbjct: 113 HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM 172

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G++P+VVTFN +M  LC+  ++  A  +L+ M   GV PD  T+ TL+ GF   G +
Sbjct: 173 GARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSI 232

Query: 242 NHAKELFVSMESMGC 256
             A  +   M  MGC
Sbjct: 233 EAALRVKARMLEMGC 247


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +   M+ +      V+   ++ G L   +  D V+ L +++   G  PD  T++ 
Sbjct: 260 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 318

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------------------IKV 115
           LI+ F K  R+     +L  +L + F P VVT+T+L                      + 
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           C P+AITY++I+DGLCK G V +A   F KM +D+ V P+V+ Y+++I G C A   +EA
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                 M+  G  P+VVTF+++++ LC  G++D    L   M + G  PD  TY TL+D 
Sbjct: 439 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDR 498

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C   RV+ A +LF  M S G
Sbjct: 499 LCRASRVDEAFDLFQQMRSDG 519



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L+K    D  L L  ++   G   +  T+S +++   K+GR+    VV
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++  +   PD VT+ +LI                         P  +TY T+  GLC+
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVV 191
            G  D+A E+   M  +   PN +TY+S++ G C A    EA   F +M  D+ V P+V+
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVI 420

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++D LCK GK+DEA   L+ MI+ G  PD  T++ L++G C  GR++   ELF  M
Sbjct: 421 AYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGM 480

Query: 252 ESMGC 256
              GC
Sbjct: 481 AERGC 485



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 23/247 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P   ++N ++  L          SL +++ + G  P+L T  ++I   CK G +   F 
Sbjct: 133 APNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFR 192

Query: 93  VLGRI--LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
           V+  +  + S  +PDV+TF S++                     + C+P+ +TY+T+IDG
Sbjct: 193 VVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 252

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K   +D+A +L  KM +   + N VTY++V+ G        +A  +  +M D G  P+
Sbjct: 253 LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPD 312

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            VT+N ++D   K  ++ EA  LL  M++ G  P   TY TL  G C +GR + A E+  
Sbjct: 313 AVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD 372

Query: 250 SMESMGC 256
            M + GC
Sbjct: 373 YMAARGC 379



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 24/258 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTH 74
            EA  + + M   +  PP + +F +++  L K    +    +   +    +GL PD+ T 
Sbjct: 153 KEAFSLLEQMA-ANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITF 211

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
           + +++  CK  R+     V  R L     P+VVT+++LI                     
Sbjct: 212 NSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE 271

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
             C+ + +TY+T++DGL K G ++ A  +  +M+D    P+ VTY ++I GF       E
Sbjct: 272 LGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLRE 331

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  L  EM++ G  P+VVT+  +   LC++G+ DEA  +LD M   G  P+A TY++++D
Sbjct: 332 AVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 391

Query: 234 GFCLTGRVNHAKELFVSM 251
           G C  GRV  A   F  M
Sbjct: 392 GLCKAGRVTEALGYFEKM 409



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 23/260 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL ++D M       P V +++ ++  L ++   D    L + +   G  P+  T++ L+
Sbjct: 84  ALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLV 143

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           N     GR    F +L ++  +   P+++TF  +IK +CK                    
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESG 203

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD IT+N+++DGLCK+  +  A  +F +  ++  +PNVVTY+++I G       +EA 
Sbjct: 204 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  +M++ G + N VT++ ++D L K G+M++A  +L  M   G  PDA TYNTL+DGF
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 236 CLTGRVNHAKELFVSMESMG 255
               R+  A  L   M   G
Sbjct: 324 FKRQRLREAVGLLREMLEAG 343



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K +       LF+   + G  P + T++ +I+  CK GR+ +   +
Sbjct: 28  PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 87

Query: 94  LGRI-LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
              + +   F P VVT+++LI                     + C P+A+TYNT+++ L 
Sbjct: 88  YDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALL 147

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE--MMDQGVQPN 189
            QG   +A  L  +M      P ++T+  +I+G C   +   A R+  E  M++ G+ P+
Sbjct: 148 GQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPD 207

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           V+TFN ++D LCK  ++ +A ++    ++ G RP+  TY+TL+DG     +++ A +L  
Sbjct: 208 VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLA 267

Query: 250 SMESMGC 256
            M  +GC
Sbjct: 268 KMVELGC 274



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 24/239 (10%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           M+  L K++  D  ++LFK++    ++PD+ T+  LI+   K  RV   + +        
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 102 FTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQGFVDKA 139
             P VVT+ ++I  +CK                     P  +TY+T+IDGLC+   VDK 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            +L  +M  +   PN VTY +++          EA  L  +M   G  P ++TF +I+  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 200 LCKNGKMDEASSLLD--LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           LCK G+++ A  ++D   MI+ G+ PD  T+N++LDG C   R+  A  +F      GC
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC 239



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 17  NEALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EA+ +   ML    HPS   V ++  +   L ++  +D  + +   + + G  P+  T+
Sbjct: 330 REAVGLLREMLEAGFHPS---VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITY 386

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +++  CK GRV+       ++ R              +V  P  I Y+ +IDGLCK G
Sbjct: 387 SSIVDGLCKAGRVTEALGYFEKMARD-------------EVVAPHVIAYSALIDGLCKAG 433

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E   +M      P+VVT++ +I G C A   +    LF  M ++G  P++VT+ 
Sbjct: 434 KIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYA 493

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++D LC+  ++DEA  L   M   G+ PD  T  T++ G     R   AK +
Sbjct: 494 TLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 16/199 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHS 75
           +EA+ I DYM     +P  ++  +I+ G L K       L  F+++    +  P +  +S
Sbjct: 365 DEAVEILDYMAARGCAPNAITYSSIVDG-LCKAGRVTEALGYFEKMARDEVVAPHVIAYS 423

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  CK G++   +  L R++R+   PDVVTF+ L              I+GLC  G 
Sbjct: 424 ALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL--------------INGLCDAGR 469

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D   ELF  M ++   P++VTY +++   C A+  +EA  LF +M   G+ P+  T   
Sbjct: 470 IDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRT 529

Query: 196 IMDELCKNGKMDEASSLLD 214
           ++  L +  + ++A  + D
Sbjct: 530 MIHGLLEVNRDEDAKRIQD 548


>gi|255569678|ref|XP_002525804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534891|gb|EEF36578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 135

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 93/130 (71%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PDA+TY+T+ID LCK  FV KA ELFLKMK + + P+VVTYTS+I   C +    EA 
Sbjct: 6   CEPDAVTYSTVIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQGREAS 65

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+D+ + PNVVTF+V+ D L K GK+ EA  ++++ I+ G+ PD  TYN+L+D +
Sbjct: 66  VLFNEMLDENIIPNVVTFSVLADGLFKEGKVSEAEGIVEVTIERGIEPDVVTYNSLMDRY 125

Query: 236 CLTGRVNHAK 245
           CL  ++N A+
Sbjct: 126 CLHNQMNRAR 135



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L K+      L LF ++   G+ PD+ T++ LI+  C   +     V+
Sbjct: 8   PDAVTYSTVIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQGREASVL 67

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P+VVTF+ L               DGL K+G V +A+ +     ++ ++P
Sbjct: 68  FNEMLDENIIPNVVTFSVL--------------ADGLFKEGKVSEAEGIVEVTIERGIEP 113

Query: 154 NVVTYTSVIRGFCYANDWNEAK 175
           +VVTY S++  +C  N  N A+
Sbjct: 114 DVVTYNSLMDRYCLHNQMNRAR 135



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+++  +P+ VT++ ++D LCK+  + +A  L   M + G+ PD  TY +L+   C + +
Sbjct: 1   MVERDCEPDAVTYSTVIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQ 60

Query: 241 VNHAKELFVSM 251
              A  LF  M
Sbjct: 61  GREASVLFNEM 71



 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M++    PDA TY+T++D  C    V+ A ELF+ M+  G
Sbjct: 1   MVERDCEPDAVTYSTVIDSLCKDNFVSKALELFLKMKRQG 40


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 132/241 (54%), Gaps = 16/241 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ +F  M      P    S+  +   L +  H    +  +K +   G+ P + + +
Sbjct: 101 PLDAIRVFHKMEDFQVKPTQ-KSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLN 159

Query: 76  ILINCFCKMGR-VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           ILI   CK    V   F    R+ R    P+        + C+PD+ TY T+I+GLCK G
Sbjct: 160 ILIKALCKNEETVESAF----RLFRE--MPN--------RGCQPDSYTYGTLINGLCKLG 205

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +AKEL  +M++K + P+VV+YTS+I G C +N+ +EA  L  EM+  G++PNV T++
Sbjct: 206 KISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYS 265

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +MD LCK+G   +A  LL++M++  + P+  TY+TL++G C  G+   A E+   M   
Sbjct: 266 SLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQ 325

Query: 255 G 255
           G
Sbjct: 326 G 326



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 15/211 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +R    PP V S NI++  L KN+   ++   LF+ + + G  PD YT+  LIN  CK+G
Sbjct: 146 MREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLG 205

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++S    +L  +     +P VV++TSLI               GLC+   +D+A EL  +
Sbjct: 206 KISQAKELLDEMEEKGLSPSVVSYTSLIH--------------GLCQSNNLDEAIELLEE 251

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    ++PNV TY+S++ G C +   ++A  L   M+ + + PN+VT++ +++ LCK GK
Sbjct: 252 MIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGK 311

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
             EA  +LD M   G++PDA  Y  ++ G C
Sbjct: 312 HREAVEILDRMRLQGLKPDAGMYGRIISGLC 342



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 29/225 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M+ ++   P V +++ ++  L K+ H    + L + +    L P++ T+S 
Sbjct: 243 DEAIELLEEMI-INGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYST 301

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LIN  CK G+      +L R+      PD   +  +I  +C                   
Sbjct: 302 LINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGG 361

Query: 117 -KPDAITY-------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
             P+  ++       N ++ GLC      +A +L+L M+ + +   + T+  +++ FC  
Sbjct: 362 ISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKR 421

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            D N+A R+  EM+  G  P+   +NV+M  L    K+ E + LL
Sbjct: 422 GDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELL 466



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 36/175 (20%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D  T+  +I  L        A+ +  +MK ++ +     + ++ RG+   +   +A R
Sbjct: 47  RHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIR 106

Query: 177 LF-----------------------------------IEMMDQGVQPNVVTFNVIMDELC 201
           +F                                    EM ++G+ P VV+ N+++  LC
Sbjct: 107 VFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALC 166

Query: 202 KNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           KN + ++ A  L   M   G +PD++TY TL++G C  G+++ AKEL   ME  G
Sbjct: 167 KNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKG 221


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHS 75
           N+AL I + + + +   P V S+N +L  + + K    +   +FK +  +G+ P++YT++
Sbjct: 149 NKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----------------- 117
           ILI  FC  G +  G    G + R+   P+VVT+ ++I   CK                 
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ I+YN +I+GLC++G + +  E+  +M  +   P+ VT+ ++I G+C   ++++A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM+  G+ PNVVT+  +++ +CK G ++ A   LD M   G+ P+  TY TL+DG
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           F   G +  A ++   M   G
Sbjct: 388 FSQQGFLKQAYQIMKEMVENG 408



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K +       L + +   GL P+L +++++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
           L  + +  + PD VTF +LI   C                     P+ +TY T+I+ +CK
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A E   +M+D+ + PN  TYT++I GF       +A ++  EM++ G  P ++T
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++  C  G+M++AS LL  MI+ G  PD  +Y+T++ GFC    +  A +L V M 
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV 475

Query: 253 SMG 255
           + G
Sbjct: 476 AKG 478



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   M++   SP  V+ +  ++  + K  + +  +    ++   GL P+  T++ 
Sbjct: 325 HQALVLHAEMVKNGLSPNVVT-YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F + G +   + ++  ++ + FTP ++T+ +LI                     + 
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G C+   ++KA +L ++M  K + P+V TY+S+I+G C      E  
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  G+ P+ VT+  +++  C  G +D+A  L D MIQ G  PD  TYN L++GF
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L + +
Sbjct: 564 NKQSRTKEAKRLLLKL 579



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N+++  L +         + + ++     PD  T + LIN +C +G      V+
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++++  +P+VVT+T+LI  +CK                    P+  TY T+IDG  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QGF+ +A ++  +M +    P ++TY ++I G C      +A  L  EM+++G  P+VV+
Sbjct: 391 QGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVS 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I+   C+N ++++A  L   M+  G+ PD  TY++L+ G C   R+    +LF  M 
Sbjct: 451 YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 253 SMG 255
           S+G
Sbjct: 511 SLG 513



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+   D M R     P   ++  ++   ++         + K +   G  P + T++ 
Sbjct: 360 NRAMEFLDQM-RDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C +GR+     +L  ++   F PDVV+++++I                     K 
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+++I GLCKQ  + +  +LF +M    + P+ VTYTS+I  +C   D ++A 
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
           RL  EM+ +G  P++VT+NV+++   K  +  EA  LL  ++     P+  TYNTL+D  
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 234 -------------GFCLTGRVNHAKELFVSMESMG 255
                        GFC+ G +N A  +  SM   G
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 36/258 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         +    L + +   G  PD+ ++S +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++    +PDV T++SLI+ +CK                    PD +TY ++I+  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +DKA  L  +M  K   P++VTY  +I GF   +   EAKRL ++++ +   PN +T
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 193 FNVIMDE---------------LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           +N ++D                 C  G M+EA  +L+ M+Q G + +   YN ++ G   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A  L+  M   G
Sbjct: 651 VGNIEKAYNLYKEMLHSG 668



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 36/243 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    +N+  +    L   + + G+ PD+ T+S LI   CK  R+     +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     PD VT+TSLI                     K   PD +TYN +I+G  K
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVI---------------RGFCYANDWNEAKRL 177
           Q    +AK L LK+  +   PN +TY ++I               +GFC     NEA R+
Sbjct: 566 QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRV 625

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G + N   +NVI+    K G +++A +L   M+  G  P + T   L      
Sbjct: 626 LESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYH 685

Query: 238 TGR 240
            G+
Sbjct: 686 EGK 688



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 36/221 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++++ ++  L K +    V  LF+ + S GL PD  T++ LIN +C  G +     +
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 94  LGRILRSCFTPDVVTFTSLI---------KVCK------------PDAITYNTIID---- 128
              +++  F+PD+VT+  LI         K  K            P+ ITYNT+ID    
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600

Query: 129 -----------GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C +G +++A  +   M  K  K N   Y  +I G     +  +A  L
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           + EM+  G  P+ VT   +   L   GK  E + LLD  ++
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLK 701



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 36/172 (20%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV-------------- 161
           CK  +  ++ ++    +   ++KA  +    K     P V++Y ++              
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 162 ----------------------IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
                                 IRGFC A +       F EM   G  PNVVT+N I+D 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDA 247

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            CK  K+ EA  LL LM   G+ P+  +YN +++G C  G++    E+   M
Sbjct: 248 YCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 137 DKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
           +  ++LF  +K+     K +   +  V++     N  N+A  +       G  P V+++N
Sbjct: 112 ETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYN 171

Query: 195 VIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            I+D + +  + +  A  +   M++ GV P+ +TYN L+ GFC  G +      F  ME 
Sbjct: 172 AILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMER 231

Query: 254 MGC 256
            GC
Sbjct: 232 NGC 234


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHS 75
           N+AL I + + + +   P V S+N +L  + + K    +   +FK +  +G+ P++YT++
Sbjct: 149 NKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----------------- 117
           ILI  FC  G +  G    G + R+   P+VVT+ ++I   CK                 
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALK 267

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ I+YN +I+GLC++G + +  E+  +M  +   P+ VT+ ++I G+C   ++++A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM+  G+ PNVVT+  +++ +CK G ++ A   LD M   G+ P+  TY TL+DG
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           F   G +  A ++   M   G
Sbjct: 388 FSQQGFLKQAYQIMKEMVENG 408



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K +       L + +   GL P+L +++++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
           L  + +  + PD VTF +LI   C                     P+ +TY T+I+ +CK
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A E   +M+D+ + PN  TYT++I GF       +A ++  EM++ G  P ++T
Sbjct: 356 AGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++  C  G+M++AS LL  MI+ G  PD  +Y+T++ GFC    +  A +L V M 
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV 475

Query: 253 SMG 255
           + G
Sbjct: 476 AKG 478



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   M++   SP  V+ +  ++  + K  + +  +    ++   GL P+  T++ 
Sbjct: 325 HQALVLHAEMVKNGLSPNVVT-YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F + G +   + ++  ++ + FTP ++T+ +LI                     + 
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G C+   ++KA +L ++M  K + P+V TY+S+I+G C      E  
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  G+ P+ VT+  +++  C  G +D+A  L D MIQ G  PD  TYN L++GF
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L + +
Sbjct: 564 NKQSRTKEAKRLLLKL 579



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N+++  L +         + + ++     PD  T + LIN +C +G      V+
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++++  +P+VVT+T+LI  +CK                    P+  TY T+IDG  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QGF+ +A ++  +M +    P ++TY ++I G C      +A  L  EM+++G  P+VV+
Sbjct: 391 QGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVS 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I+   C+N ++++A  L   M+  G+ PD  TY++L+ G C   R+    +LF  M 
Sbjct: 451 YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 253 SMG 255
           S+G
Sbjct: 511 SLG 513



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+   D M R     P   ++  ++   ++         + K +   G  P + T++ 
Sbjct: 360 NRAMEFLDQM-RDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C +GR+     +L  ++   F PDVV+++++I                     K 
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+++I GLCKQ  + +  +LF +M    + P+ VTYTS+I  +C   D ++A 
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
           RL  EM+ +G  P++VT+NV+++   K  +  EA  LL  ++     P+  TYNTL+D  
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 234 -------------GFCLTGRVNHAKELFVSMESMG 255
                        GFC+ G +N A  +  SM   G
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 36/258 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         +    L + +   G  PD+ ++S +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++    +PDV T++SLI+ +CK                    PD +TY ++I+  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +DKA  L  +M  K   P++VTY  +I GF   +   EAKRL ++++ +   PN +T
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 193 FNVIMDE---------------LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           +N ++D                 C  G M+EA  +L+ M+Q G + +   YN ++ G   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A  L+  M   G
Sbjct: 651 VGNIEKAYNLYKEMLHSG 668



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 36/243 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    +N+  +    L   + + G+ PD+ T+S LI   CK  R+     +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     PD VT+TSLI                     K   PD +TYN +I+G  K
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVI---------------RGFCYANDWNEAKRL 177
           Q    +AK L LK+  +   PN +TY ++I               +GFC     NEA R+
Sbjct: 566 QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRV 625

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G + N   +NVI+    K G +++A +L   M+  G  P + T   L      
Sbjct: 626 LESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYH 685

Query: 238 TGR 240
            G+
Sbjct: 686 EGK 688



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 36/221 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++++ ++  L K +    V  LF+ + S GL PD  T++ LIN +C  G +     +
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 94  LGRILRSCFTPDVVTFTSLI---------KVCK------------PDAITYNTIID---- 128
              +++  F+PD+VT+  LI         K  K            P+ ITYNT+ID    
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600

Query: 129 -----------GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C +G +++A  +   M  K  K N   Y  +I G     +  +A  L
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           + EM+  G  P+ VT   +   L   GK  E + LLD  ++
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLK 701



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 36/172 (20%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV-------------- 161
           CK  +  ++ ++    +   ++KA  +    K     P V++Y ++              
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 162 ----------------------IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
                                 IRGFC A +       F EM   G  PNVVT+N I+D 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDA 247

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            CK  K+ EA  LL LM   G+ P+  +YN +++G C  G++    E+   M
Sbjct: 248 YCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 137 DKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
           +  ++LF  +K+     K +   +  V++     N  N+A  +       G  P V+++N
Sbjct: 112 ETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYN 171

Query: 195 VIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            I+D + +  + +  A  +   M++ GV P+ +TYN L+ GFC  G +      F  ME 
Sbjct: 172 AILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMER 231

Query: 254 MGC 256
            GC
Sbjct: 232 NGC 234


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 60/299 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F  M+R  P  P V  F  ++G + +    D V+SL +++    +  + Y+ +I
Sbjct: 60  EDAIDLFGDMVRSRP-LPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           L+ CFC   ++       G+I +  F P VVTF++L+                 ++CKP+
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPN 178

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY--------------------- 158
            +T+ T+++GLC++G V +A  L  +M +  ++PN +TY                     
Sbjct: 179 VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 238

Query: 159 --------------------TSVIRGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNVIM 197
                               T +I GFC +  W+EA++L  EM++ + + P+VVT+N ++
Sbjct: 239 KMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALI 298

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   K GK  EA  L D M+  G+ P   TY++++DGFC   R++ A+ +F  M + GC
Sbjct: 299 NAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 357



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 120/253 (47%), Gaps = 31/253 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   ML      P V ++N ++    K   +     L+  +   G+ P   T+S 
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 77  LINCFCKMGRV---SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           +I+ FCK  R+    H F ++                   K C PD IT+NT+I G C+ 
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMA-----------------TKGCSPDIITFNTLIAGYCRA 374

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             VD   +L  +M +  +  N +TYT++I GFC   D N A+ L  EM+  GV PNVVT 
Sbjct: 375 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTC 434

Query: 194 NVIMDELCKNGKMDEA--------SSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRVN 242
           N ++D LC NGK+ +A         S +D+   H   GV PD  TYN L+ G    G+  
Sbjct: 435 NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFL 494

Query: 243 HAKELFVSMESMG 255
            A+EL+  M   G
Sbjct: 495 EAEELYEEMPHRG 507



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 31/264 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-------LFPD 70
           EA+ + D ML     P  ++   I+ G + K     + L+L +++           ++P 
Sbjct: 197 EAVALLDRMLEDGLQPNQITYGTIVDG-MCKMGDTVSALNLLRKMEEVSHIKPNVVIWP- 254

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLIKV-------------- 115
           L   + +IN FC  GR S    +L  +L R   +PDVVT+ +LI                
Sbjct: 255 LERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELY 314

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                    P  ITY+++IDG CKQ  +D A+ +F  M  K   P+++T+ ++I G+C A
Sbjct: 315 DEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRA 374

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              ++  +L  EM + G+  N +T+  ++   C+ G ++ A  LL  M+  GV P+  T 
Sbjct: 375 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTC 434

Query: 229 NTLLDGFCLTGRVNHAKELFVSME 252
           NTLLDG C  G++  A E+F +M+
Sbjct: 435 NTLLDGLCDNGKLKDALEMFKAMQ 458



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 32/263 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y++      P + +FN ++    + K  D  + L   +   GL  +  T++ LI+ FC++
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------------- 116
           G ++    +L  ++ S   P+VVT  +L+  +C                           
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHP 469

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD  TYN +I GL  +G   +A+EL+ +M  + + P+ +TY SVI G C  +  +
Sbjct: 470 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLD 529

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA ++F  M  +   PNVVTF  +++  CK G++D+   L   M + G+  +A TY TL+
Sbjct: 530 EATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 589

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF   G +N A ++F  M + G
Sbjct: 590 HGFRKVGNINGALDIFQEMMASG 612



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 25/213 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-----------GLFPDLYTHSILINCFC 82
           P V + N +L  L  N      L +FK +  +           G+ PD+ T++ILI+   
Sbjct: 429 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILIS--- 485

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
                  G +  G+ L +    + +    ++    PD ITYN++I GLCKQ  +D+A ++
Sbjct: 486 -------GLINEGKFLEAEELYEEMPHRGIV----PDTITYNSVIHGLCKQSRLDEATQM 534

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M  K+  PNVVT+T++I G+C A   ++   LF EM  +G+  N +T+  ++    K
Sbjct: 535 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRK 594

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            G ++ A  +   M+  GV PD  T   +L G 
Sbjct: 595 VGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 17/188 (9%)

Query: 30  HP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           HP     P V ++NI++  L     +     L++ +   G+ PD  T++ +I+  CK  R
Sbjct: 468 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSR 527

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +   +    F+P+VVTFT              T+I+G CK G VD   ELF +M
Sbjct: 528 LDEATQMFDSMGSKSFSPNVVTFT--------------TLINGYCKAGRVDDGLELFCEM 573

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N +TY ++I GF    + N A  +F EMM  GV P+ +T   ++  L    ++
Sbjct: 574 GRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEEL 633

Query: 207 DEASSLLD 214
             A ++L+
Sbjct: 634 KRAVAMLE 641


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 26/256 (10%)

Query: 2   RLKSSGEGDITTITPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLF 59
           RL  +GEGD++           D+   M  +   P V ++NIM+G + K     T  SLF
Sbjct: 106 RLSKAGEGDLSR----------DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLF 155

Query: 60  KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119
           +++   GL PD+ T++ LI+ + K+G +     +           + + F      C+PD
Sbjct: 156 EQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLF----------EEMKFMG----CEPD 201

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ITYN +I+  CK   + +A E F +MKDK++KPNV++Y+++I   C       A + F+
Sbjct: 202 VITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFV 261

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           +M   G+ PN  T++ ++D  CK G + EA  L D M+Q  V  +  TY TLLDG C  G
Sbjct: 262 DMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEG 321

Query: 240 RVNHAKELFVSMESMG 255
            +N A+ELF +M   G
Sbjct: 322 MMNEAEELFRAMGKAG 337



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E++C+F+ M +     P V ++N ++    K K        F+ +    L P++ ++S 
Sbjct: 184 DESVCLFEEM-KFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYST 242

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP----------------- 118
           LI+  CK G +         + R    P+  T++SLI   CK                  
Sbjct: 243 LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH 302

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              + +TY T++DGLC++G +++A+ELF  M    V PN+  YT++I G       ++A 
Sbjct: 303 VDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAM 362

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM ++ ++P+++ +  I+  LC   K++E   ++  M + G+  +   Y TL+D +
Sbjct: 363 ELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAY 422

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G    A  L   M  +G
Sbjct: 423 FKAGNRTEAINLLEEMRDLG 442



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  M +   +P  + ++  ++    K +  D  + LF  +    + PD+     
Sbjct: 324 NEAEELFRAMGKAGVTPN-LQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGT 382

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   C   ++    +++  +  S    + V +T+L+                       
Sbjct: 383 IVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +   +T+  +IDGLCK+G V +A   F +M D +++PNV  YT++I G C  N   +AK
Sbjct: 443 TEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAK 502

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM D+ + P+ + +  ++D   K+G   EA ++ + M++ G+  D + Y +L+ G 
Sbjct: 503 KLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G+V  A++    M   G
Sbjct: 563 SQCGQVQQARKFLAEMIGKG 582



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 97  ILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +L S   P    F  L     VC P    ++ +   L + G ++ A + FL+M    V P
Sbjct: 36  VLSSWVLPGSDVFEILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLP 95

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              +  + +     A + + ++  F +M+  G+ P V T+N+++  +CK G M  A SL 
Sbjct: 96  KARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLF 155

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M + G+ PD  TYNTL+DG+   G ++ +  LF  M+ MGC
Sbjct: 156 EQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGC 198



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            ++L + +   G    + T   LI+  CK G V       GR+      P+V  +T+LI 
Sbjct: 431 AINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALI- 489

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                        DGLCK   +  AK+LF +M+DKN+ P+ + YT++I G     ++ EA
Sbjct: 490 -------------DGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEA 536

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +  +MM+ G++ ++  +  ++  L + G++ +A   L  MI  G+ PD      LL  
Sbjct: 537 LNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRK 596

Query: 235 FCLTGRVNHAKEL 247
               G ++ A EL
Sbjct: 597 HYELGNIDEAIEL 609



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 25  YMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           Y  RM  H   P V+ +  ++  L KN        LF  +    + PD   ++ +I+   
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNL 528

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K G       +  +++      D+  +TSL+               GL + G V +A++ 
Sbjct: 529 KHGNFQEALNMRNKMMEMGIELDLYAYTSLVW--------------GLSQCGQVQQARKF 574

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
             +M  K + P+    T ++R      + +EA  L  E++++G+
Sbjct: 575 LAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGL 618


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V ++NI++  L K    D    +   +   G+ PD  T + +++  CK G+      
Sbjct: 7   APDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHS 66

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +L  +      P   T+ +LI  +CK                    PD +TY+ + DGLC
Sbjct: 67  LLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLC 126

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A EL  +M      PN+VTY ++I G C A+   +A  L   ++  G  P+VV
Sbjct: 127 KRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVV 186

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ +I+D LCK G++D+A  +++ M++ G  P   TY  L++G C TGRV+ A  +F  M
Sbjct: 187 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246

Query: 252 ESMGC 256
            S  C
Sbjct: 247 VSKDC 251



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 53/276 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L K ++ D   +L     S+G  PD+ T+SIL +  CK GR+   F +
Sbjct: 78  PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 137

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +  +  TP++VT+ +LI  +CK                    PD +TY  I+DGLCK
Sbjct: 138 VKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCK 197

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-------- 184
           +G +DKA ++   M  +   P+V+TYT+++ G C     +EA  +F EM+ +        
Sbjct: 198 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALA 257

Query: 185 ----------------------GVQ--PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
                                 G++  P +  +N +MD  CK G++DE  ++ + M   G
Sbjct: 258 YVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 317

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             P+  TYN ++DG C  G+V+ A     SM S GC
Sbjct: 318 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 21/216 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------- 113
           +N   + PD++T++ILI+  CK  +      +L  ++    TPD VTF S++        
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 114 -------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        + C+P   TYNT+I GLCKQ  VD+AK L  +       P+VVTY+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +  G C     +EA  L  EM   G  PN+VT+N ++D LCK  K ++A  LL+ ++  G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             PD  TY  ++DG C  GR++ A ++   M   GC
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 216



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL + + ML+   +P  ++   +M G L +    D    +FK + S     D   +  
Sbjct: 202 DKALKMVEGMLKRGCTPSVITYTALMEG-LCRTGRVDEAHHIFKEMVSKDCTADALAYVS 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+N +CK  R      V+  I     TP +  + +L+                     + 
Sbjct: 261 LVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 317

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN ++DGLCK G VD+A      M      P+VV+Y  +I G   A+   EA+
Sbjct: 318 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 377

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++  +M+  G+ P+ VT+N +M + CK  + D+A  +L  MI+ GV PD  TYNTL+ G 
Sbjct: 378 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGL 437

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             T R+  A EL   M   GC
Sbjct: 438 SQTNRLGDAYELMHEMLRNGC 458



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 62/299 (20%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA  + D M++    PP   ++N ++    K + +D  + + K +   G+ PD  T++
Sbjct: 373 PKEARQVLDQMIQAGI-PPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYN 431

Query: 76  ILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI-KVCK---------------- 117
            LI+   +  R+   + ++  +LR+ C      T+ ++I ++CK                
Sbjct: 432 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 491

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                + +TYN  ID LCK+G +D+A  L  +M   +   + V+YT+VI G C A   + 
Sbjct: 492 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDR 548

Query: 174 AKRLFIEMM------------------------------------DQGVQPNVVTFNVIM 197
           A +L  EM+                                     +G  P+V+T+N+++
Sbjct: 549 ASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVI 608

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             LCK  K+D+A  L D M   G+   + +Y  L+ G C  GR   A ++   M S  C
Sbjct: 609 TCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 667



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 50/257 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++    K    D + ++F+ +   G  P++ T++I+++  CK G+V   F  
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  +               C PD ++YN IIDGL K     +A+++  +M    + P
Sbjct: 345 LESMHSA--------------GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 390

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV---------------------- 191
           + VTY +++  FC    +++A  +   M+  GV P+ V                      
Sbjct: 391 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 450

Query: 192 --------------TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
                         T+N I+D LCK G + +A  L+D M  HGV  +  TYN  +D  C 
Sbjct: 451 HEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 510

Query: 238 TGRVNHAKELFVSMESM 254
            GR++ A  L   M+++
Sbjct: 511 EGRLDEASSLLSEMDTL 527


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FNI++    K+K+    + +F  +N  G+ P++ T++ LIN  C  G+V+    +
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++ SC  P+++T  +L+   CK                    P+  TYN +ID  CK
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              ++ A  L+  M  K V P+V TY  +I G C   D   A+ L  EM  + ++ +++T
Sbjct: 354 DENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLIT 413

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D LC  G+M +A  LLD M + G++P   TYNT++DG+C  G +  A  L   ME
Sbjct: 414 YNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQME 473

Query: 253 SMG 255
            +G
Sbjct: 474 KVG 476



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 25/256 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M+R    P  +S FNI++  L K    +    + + +   G+  ++ T++ LI+ +
Sbjct: 150 VYKEMIRRRIEPTLIS-FNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 82  CKMGRVSHGF---VVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           CKMG++   +    +L  +      P+ VTF  LI                     +  K
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVK 268

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TYN++I+GLC  G V++A  L  +M +  +KPN++T+ +++ GFC      +A  L
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGEL 328

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+ PNV T+N+++D  CK+  M++A +L  +M+  GV PD  TYN L+ G C 
Sbjct: 329 FDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCR 388

Query: 238 TGRVNHAKELFVSMES 253
            G +  A+ L   M++
Sbjct: 389 KGDLEAARNLVSEMDT 404



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 22/235 (9%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           DY L++      V+S N ++  L K      +  ++K +    + P L + +I+IN  CK
Sbjct: 121 DYGLKLS-----VTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD---KAK 140
           +G+++      G I+       V            + ITYNT+IDG CK G +    KA 
Sbjct: 176 VGKLNKA----GDIIEDMKVRGV----------SANVITYNTLIDGYCKMGKIGKMYKAD 221

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +  +M+   + PN VT+  +I GFC   + + A ++F EM  QGV+PNVVT+N +++ L
Sbjct: 222 AILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGL 281

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C NGK++EA++L D M+   ++P+  T+N LL+GFC    V  A ELF  M   G
Sbjct: 282 CNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQG 336



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F  M R     P V ++N ++  L  N   +   +L  ++ ++ L P++ TH+ L+
Sbjct: 255 AMKVFAEMNR-QGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALL 313

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           N FCK   V     +   + +   TP+V T+  LI   CK                    
Sbjct: 314 NGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TYN +I GLC++G ++ A+ L  +M  K++K +++TY  +I   C   +  +A RL
Sbjct: 374 PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRL 433

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM  +G++P+ +T+N ++D  CK G +  A +L   M + G   +  TYN L+ GFC 
Sbjct: 434 LDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCK 493

Query: 238 TGRVNHAKELFVSMESMG 255
             ++  A  L   M   G
Sbjct: 494 KDKLEDANGLLNEMLEKG 511



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 22/233 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M+      P + + N +L    KNK       LF  +   G+ P++ T++I
Sbjct: 288 NEATALRDQMVN-SCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ +CK   +   F +   +L     PDV T+  LI                     K 
Sbjct: 347 LIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D ITYN +ID LC +G + KA  L  +M  K +KP+ +TY ++I G+C   +   A 
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAAL 466

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            L  +M   G   NV T+NV++   CK  K+++A+ LL+ M++ G+ P+  TY
Sbjct: 467 NLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 106/208 (50%), Gaps = 22/208 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M +   +P  V+++NI++    K+++ +   +L++ +   G+ PD+ T++ L
Sbjct: 324 QAGELFDDMPKQGITPN-VTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCL 382

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I   C+ G +     ++  +       D++T+  LI                     K  
Sbjct: 383 IAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL 442

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP  +TYNT+IDG CK+G +  A  L  +M+      NV TY  +I+GFC  +   +A  
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANG 502

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           L  EM+++G+ PN +T+ ++ +E+ + G
Sbjct: 503 LLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 62/101 (61%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E F +  D  +K +V +   ++ G     +  + + ++ EM+ + ++P +++FN++++ L
Sbjct: 114 EAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGL 173

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           CK GK+++A  +++ M   GV  +  TYNTL+DG+C  G++
Sbjct: 174 CKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKI 214



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D M R    P  ++ +N M+    K  +    L+L  ++   G   ++ T+++L
Sbjct: 429 KALRLLDEMCRKGLKPSQLT-YNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           I  FCK  ++     +L  +L     P+               +TY  + + + ++GFV
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPN--------------RMTYEIVTEEMMEKGFV 532


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N++L  + +    D  + L ++L   G   D+ +++ ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
               P++VTF +LI                       C PD   Y TIIDG+CK+G ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E+  +M    +KPNVV Y +V++G C A  W EA+ L  EM  +    + VTFN+++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+NG +D    LL+ M+ HG  PD  TY T+++GFC  G ++ A  L  SM S GC
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R+  +P  V+ FN ++G L +N  ++ V  +  +++  G  PD+  ++ +I+  
Sbjct: 238 LMDEMVRVDCAPNIVT-FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN V+YT V++G C A  W +A+ L  +M+ QG  PN VTFN +++ LCK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL   M + G
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++ S G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ V++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ I
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C     + A + F  M S GC
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K ++S G  P+  +++I++   
Sbjct: 378 LLEQMLS-HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C  GR      ++ ++++    P+ VTF +LI                       C PD 
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          N+  ++F  
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  ++ + V +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 241 VNHAKELFVSMESMG 255
              A+EL   + S G
Sbjct: 617 AKEAQELLSELCSRG 631



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +F  ++  L         L +   ++  G  P    + +++   C+ G    G
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG----G 161

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           F    R+L +             K C  D    N +++ +C+QG VD+A  L  K+    
Sbjct: 162 FRNSVRVLEAMHA----------KGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG 211

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            + ++V+Y +V++G C A  W + + L  EM+     PN+VTFN ++  LC+NG  +   
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +L  M +HG  PD   Y T++DG C  G +  A E+   M S G
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A T+  ++ GLC +G +  A E+  +M  K   P    Y  ++   C +  +  + R+
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M  +G   +    N++++ +C+ G +DEA  LL  +   G   D  +YN +L G C+
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  + C
Sbjct: 229 AKRWGDVEELMDEMVRVDC 247



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+ YT   ++   C  GR++    VL          D ++F    K C P    Y+ I++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVL----------DEMSF----KGCAPIPPMYHVILE 154

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             C+ G    +  +   M  K    +      V+   C     +EA  L  ++   G + 
Sbjct: 155 AACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEA 214

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V++N ++  LC   +  +   L+D M++    P+  T+NTL+   C  G      E+ 
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 275 AQMSEHGC 282



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C+ G   +            V PN  T+  V+RG C      +A  +  E
Sbjct: 80  VAYNAMVAGYCRAG---QLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  P    ++VI++  C++G    +  +L+ M   G   D    N +L+  C  G 
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGC 196

Query: 241 VNHAKELFVSMESMGC 256
           V+ A  L   +   GC
Sbjct: 197 VDEAVGLLRKLAFFGC 212



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VV Y +++ G+C A    +            V PN  TF  ++  LC  G++ +A  +LD
Sbjct: 79  VVAYNAMVAGYCRA---GQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G  P    Y+ +L+  C +G   ++  +  +M + GC
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGC 177


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 132/254 (51%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD ML      P V ++NI++  L    H    LS+ + +   G  P++ T++ L+  F 
Sbjct: 178 FDSMLS-DGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 236

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAI 121
           + G V     ++G +      P++VTF S++  +CK                    PD +
Sbjct: 237 RAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGV 296

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YNT++ G CK G   +A  +F +M  K + P+VVT+TS+I   C A +   A  L  +M
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQM 356

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            ++G+Q N VTF  ++D  CK G +D+A   +  M Q  ++P    YN L++G+C+ GR+
Sbjct: 357 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRM 416

Query: 242 NHAKELFVSMESMG 255
           + A+EL   ME+ G
Sbjct: 417 DEARELLHEMEAKG 430



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M+R   +P  VS +N ++G   K       LS+F  +   G+ PD+ T + L
Sbjct: 278 DARKVFDEMVREGLAPDGVS-YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 336

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVC-- 116
           I+  CK G +     ++ ++       + VTFT+LI                   K C  
Sbjct: 337 IHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP  + YN +I+G C  G +D+A+EL  +M+ K +KP+VVTY+++I  +C   D + A  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M+++GV P+ +T++ ++  LC   ++ +A  L   MI+ G++PD FTY +L+DG C
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHC 516

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V  A  L   M   G
Sbjct: 517 KEGNVESALSLHDKMVKAG 535



 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+R     P + +FN M+  + K    +    +F  +   GL PD  +++ L+  +CK G
Sbjct: 250 MMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYN 124
                  V   + +    PDVVTFTSLI V CK                     + +T+ 
Sbjct: 310 CSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFT 369

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +IDG CK+GF+D A      MK   +KP+VV Y ++I G+C     +EA+ L  EM  +
Sbjct: 370 ALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 429

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G++P+VVT++ I+   CKN     A  L   M++ GV PDA TY++L+   C   R++ A
Sbjct: 430 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDA 489

Query: 245 KELFVSMESMG 255
             LF +M  +G
Sbjct: 490 HVLFKNMIKLG 500



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 24/257 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M +    P  V +F  ++  + K  + +  ++L +++   GL  +  T + 
Sbjct: 312 HEALSVFAEMTQKGIMPD-VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTA 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC-FTPDVVTFTSLI---------------------K 114
           LI+ FCK G +    + + R ++ C   P VV + +LI                     K
Sbjct: 371 LIDGFCKKGFLDDALLAV-RGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 429

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KPD +TY+TII   CK      A EL  +M +K V P+ +TY+S+IR  C     ++A
Sbjct: 430 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDA 489

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  M+  G+QP+  T+  ++D  CK G ++ A SL D M++ GV PD  TY+ L++G
Sbjct: 490 HVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLING 549

Query: 235 FCLTGRVNHAKELFVSM 251
              + R   A++L   +
Sbjct: 550 LSKSARAMEAQQLLFKL 566



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    K    D  L   + +    + P +  ++ LIN +C +GR+     +L  +
Sbjct: 367 TFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 426

Query: 98  LRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT++++I   CK                    PDAITY+++I  LC +  +
Sbjct: 427 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRL 486

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  LF  M    ++P+  TYTS+I G C   +   A  L  +M+  GV P+VVT++V+
Sbjct: 487 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVL 546

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           ++ L K+ +  EA  LL  +      P    Y+                LL GFC+ G +
Sbjct: 547 INGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 606

Query: 242 NHAKELFVSM 251
           N A +++ SM
Sbjct: 607 NEADKVYQSM 616



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + YN ++  L        A+  F  M    V PNV TY  ++R  C      EA  +
Sbjct: 154 PSVLAYNAVLLALSDASLTS-ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M   G  PNVVT+N ++    + G++D A  L+ +M + G++P+  T+N++++G C 
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 238 TGRVNHAKELFVSMESMG 255
            G++  A+++F  M   G
Sbjct: 273 AGKMEDARKVFDEMVREG 290



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 105/218 (48%), Gaps = 2/218 (0%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+++   P   +  +++ G   K  + ++ LSL  ++   G+ PD+ T+S+
Sbjct: 487 SDAHVLFKNMIKLGLQPDEFTYTSLIDG-HCKEGNVESALSLHDKMVKAGVLPDVVTYSV 545

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAITYNTIIDGLCKQGF 135
           LIN   K  R      +L ++      P    + +L+  C K +  +   ++ G C +G 
Sbjct: 546 LINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 605

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A +++  M D+N   +   Y+ +I G C A +  +A     +M+  G  PN  +   
Sbjct: 606 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTIS 665

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++  L +NG + EA  ++  ++ +    DA     L+D
Sbjct: 666 LIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALID 703



 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+V+ +N ++  L  +  +  A    D M+  GV P+ +TYN L+   C  G    A
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 245 KELFVSMESMGC 256
             +   M   GC
Sbjct: 210 LSILRDMRGAGC 221


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 129/267 (48%), Gaps = 31/267 (11%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYT 73
           T ++A+ IF    R     P V + NI++    + +  D  L LF  +     L P+  T
Sbjct: 53  TMDQAMAIF----RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATT 108

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------- 113
           ++ +I C+CKM R+     +L     SC + DV+  TS+                     
Sbjct: 109 YTAIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMV 166

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             K  KPD + +N II G CK G V +A E+   +      PN VTYT++I GFC + + 
Sbjct: 167 EKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNL 226

Query: 172 NEAKRLF--IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +EA +LF  +   D   +PNVVTFN ++  LCK  +++ A  L+  M    +R D FTY 
Sbjct: 227 SEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYT 286

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           TL+DG C  GR +    +F  M   GC
Sbjct: 287 TLMDGLCKQGRTSEVSRVFEEMLREGC 313



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 26/223 (11%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           ++ Y  +L + ++ ++    PD+   +++I+ FCK GRV   + +L  ++     P+ VT
Sbjct: 156 DEAYQLLLDMVEKKSAK---PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212

Query: 109 FTSLIK-VCK----------------------PDAITYNTIIDGLCKQGFVDKAKELFLK 145
           +T+LI   CK                      P+ +T+N +I GLCK   ++ A EL  +
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQ 272

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MK ++++ +  TYT+++ G C     +E  R+F EM+ +G  P+VVT+  ++   CK G 
Sbjct: 273 MKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + +A  ++  M+  G+ PD  TY  LL+G    G+V  A E F
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFF 375



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 25/259 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+    + P + ++N+++    K         + + L S G  P+  T++ 
Sbjct: 156 DEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTT 215

Query: 77  LINCFCKMGRVSHGFVVLGRILRS---CFTPDVVTFTSLIK-VCKPDAI----------- 121
           LI+ FCK G +S    +  ++L S      P+VVTF +LI  +CK D +           
Sbjct: 216 LIDGFCKSGNLSEALQLF-KVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274

Query: 122 ---------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                    TY T++DGLCKQG   +   +F +M  +   P+VVTYT+++   C A    
Sbjct: 275 ARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQ 334

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+++   M+ +G+ P+V T+ V+++ L +NGK+  A+   + +++    P A  Y+ L+
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALV 394

Query: 233 DGFCLTGRVNHAKELFVSM 251
            G C    V+ A + +V M
Sbjct: 395 RGCCKAALVDEAVKYYVEM 413



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 53/238 (22%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV----VTFTSLIKV--------- 115
           P+ +T S+LI   CK GR+        ++L     P++    +   SL +          
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 116 -----CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVI------- 162
                C P  IT N +I+G C+   +DKA ELF +M K+  + P   TYT++I       
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 163 --------------------------RGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNV 195
                                     RGFC A   +EA +L ++M++ +  +P++V +NV
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           I+   CK G++ EA  +L+ ++  G  P+A TY TL+DGFC +G ++ A +LF  + S
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSS 238



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 17  NEALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EAL +F  +  R H + P V +FN ++  L K    +    L K++ +  L  D +T++
Sbjct: 227 SEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYT 286

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L++  CK GR S    V   +LR              + C P  +TY T++   CK G 
Sbjct: 287 TLMDGLCKQGRTSEVSRVFEEMLR--------------EGCNPSVVTYTTLVHAHCKAGS 332

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A+++   M  K + P+V TYT ++ G         A   F +++ +   P  V ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++   CK   +DEA      M+   + PD  T   L++  C  GR +
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 146/332 (43%), Gaps = 91/332 (27%)

Query: 14   ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
            I  N+A+ +FD  L   P P    +FN +L  +AK  +Y TV  +++++N  G+ PDLYT
Sbjct: 925  IKLNDAIKLFDRSLCSEPMPC-TDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYT 983

Query: 74   HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------- 114
             +ILI+C C +  V  GF V G  L+  F PD VT T+L+K                   
Sbjct: 984  LNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMT 1043

Query: 115  -----------------VCKP-------------------DAITYNTIIDGLCKQGFVDK 138
                             +CK                    D  TY  IID LCK G   +
Sbjct: 1044 KKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTE 1103

Query: 139  AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE------------------ 180
            A ++F +M    + P+VV Y+S++ G C      EA   F E                  
Sbjct: 1104 ALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIH 1163

Query: 181  -----------------MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
                             M+D+G  P+  TF +++D LCK GK+ EA  +L+LM   G  P
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEP 1223

Query: 224  DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D  TYNTL++G CL G++  A +LF S+   G
Sbjct: 1224 DILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36   VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            V ++ +++  L K+      L +F  +   G+ PD+  +S L++  C+ GR+        
Sbjct: 1085 VFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFK 1144

Query: 96   RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
             +     + DV T+ SLI                     +   PDA T+  +IDGLCK+G
Sbjct: 1145 EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 1204

Query: 135  FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             V +A+++   M+ K  +P+++TY +++ G C      +A +LF  + D+G++ NV ++N
Sbjct: 1205 KVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYN 1264

Query: 195  VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++++  CK+ K+DEA    + M   G++P   TYNTL+   C +GRV  A++LFV M++ 
Sbjct: 1265 ILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 1324

Query: 255  G 255
            G
Sbjct: 1325 G 1325



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 33/284 (11%)

Query: 1    ERLKSSGEGDITTI-----------TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN 49
            E++K + +GD+ T               EAL +F  M+     P  V   ++M G L + 
Sbjct: 1075 EKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG-LCRF 1133

Query: 50   KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
                  L  FK +   G+  D+YT++ LI+   + G        L  ++   F+PD  TF
Sbjct: 1134 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTF 1193

Query: 110  TSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
            T LI  +CK                    PD +TYNT+++GLC  G ++ A +LF  + D
Sbjct: 1194 TILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLAD 1253

Query: 149  KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
            + +K NV +Y  +I G+C     +EA R F EM  +G++P+ VT+N ++  LC++G++  
Sbjct: 1254 RGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRT 1313

Query: 209  ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            A  L   M   G      TY  LLDG C  G +  A +LF S++
Sbjct: 1314 AQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIK 1357



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            EA  I + M R     P + ++N ++  L      +    LF+ L   G+  ++++++IL
Sbjct: 1208 EAQQILELM-RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            IN +CK  ++   F     +      P         K  KP  +TYNT+I  LC+ G V 
Sbjct: 1267 INGYCKDQKIDEAFRFFEEM-----RP---------KGLKPSTVTYNTLIGALCQSGRVR 1312

Query: 138  KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
             A++LF++M+       + TY  ++ G C      EA  LF  +     +PN+  F++++
Sbjct: 1313 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILL 1372

Query: 198  DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            D +C+ GK++EA    D + ++G+ PD   YN L++G C  G ++ A +L   ME  GC
Sbjct: 1373 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 1431



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 15/216 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +EA   F+ M R     P   ++N ++G L ++    T   LF  + + G F  L T+ +
Sbjct: 1277 DEAFRFFEEM-RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCV 1335

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++  CK G +     +   I ++   P++  F+ L+              DG+C+ G +
Sbjct: 1336 LLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILL--------------DGMCRAGKL 1381

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A + F ++    ++P+ + Y  +I G C     +EA +L  +M ++G  P+ +TFNVI
Sbjct: 1382 EEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVI 1441

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            +  L K  ++ EA  LL+ M      PD    + LL
Sbjct: 1442 IQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 21/172 (12%)

Query: 36   VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            +S++ ++L  L KN H +  + LF+ +  T   P++   SIL++  C+ G++   +    
Sbjct: 1330 LSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 1389

Query: 96   RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
             I ++   PD + +  LI                     K C PD+IT+N II  L K+ 
Sbjct: 1390 EISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKEN 1449

Query: 135  FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
             + +A +L  +M+++N  P+    + ++    +   W+ A       + +GV
Sbjct: 1450 EIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 1501


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N++L  + +    D  + L ++L   G   D+ +++ ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
               P++VTF +LI                       C PD   Y TIIDG+CK+G ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E+  +M    +KPNVV Y +V++G C A  W EA+ L  EM  +    + VTFN+++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+NG +D    LL+ M+ HG  PD  TY T+++GFC  G ++ A  L  SM S GC
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R+  +P  V+ FN ++G L +N  ++ V  +  +++  G  PD+  ++ +I+  
Sbjct: 238 LMDEMVRVDCAPNIVT-FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN V+YT V++G C A  W +A+ L  +M+ QG  PN VTFN +++ LCK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL   M + G
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++ S G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ V++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ I
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C     + A + F  M S GC
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K ++S G  P+  +++I++   
Sbjct: 378 LLEQMLS-HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C  GR      ++ ++++    P+ VTF +LI                       C PD 
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          N+  ++F  
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  ++ + V +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 241 VNHAKELFVSMESMG 255
              A+EL   + S G
Sbjct: 617 AKEAQELLSELCSRG 631



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +F  ++  L         L +   ++  G  P    + +++   C+ G    G
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG----G 161

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           F    R+L +             K C  D    N +++ +C+QG VD+A  L  K+    
Sbjct: 162 FRNSVRVLEAMHA----------KGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG 211

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            + ++V+Y +V++G C A  W + + L  EM+     PN+VTFN ++  LC+NG  +   
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +L  M +HG  PD   Y T++DG C  G +  A E+   M S G
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A T+  ++ GLC +G +  A E+  +M  K   P    Y  ++   C +  +  + R+
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M  +G   +    N++++ +C+ G +DEA  LL  +   G   D  +YN +L G C+
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  + C
Sbjct: 229 AKRWGDVEELMDEMVRVDC 247



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+ YT   ++   C  GR++    VL          D ++F    K C P    Y+ I++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVL----------DEMSF----KGCAPIPPMYHVILE 154

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             C+ G    +  +   M  K    +      V+   C     +EA  L  ++   G + 
Sbjct: 155 AACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEA 214

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V++N ++  LC   +  +   L+D M++    P+  T+NTL+   C  G      E+ 
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 275 AQMSEHGC 282



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C+ G   +            V PN  T+  V+RG C      +A  +  E
Sbjct: 80  VAYNAMVAGYCRAG---QLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  P    ++VI++  C++G    +  +L+ M   G   D    N +L+  C  G 
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGC 196

Query: 241 VNHAKELFVSMESMGC 256
           V+ A  L   +   GC
Sbjct: 197 VDEAVGLLRKLAFFGC 212



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VV Y +++ G+C A    +            V PN  TF  ++  LC  G++ +A  +LD
Sbjct: 79  VVAYNAMVAGYCRA---GQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G  P    Y+ +L+  C +G   ++  +  +M + GC
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGC 177


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N++L  + +    D  + L ++L   G   D+ +++ ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
               P++VTF +LI                       C PD   Y TIIDG+CK+G ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E+  +M    +KPNVV Y +V++G C A  W EA+ L  EM  +    + VTFN+++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+NG +D    LL+ M+ HG  PD  TY T+++GFC  G ++ A  L  SM S GC
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R+  +P  V+ FN ++G L +N  ++ V  +  +++  G  PD+  ++ +I+  
Sbjct: 238 LMDEMVRVDCAPNIVT-FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN V+YT V++G C A  W +A+ L  +M+ QG  PN VTFN +++ LCK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL   M + G
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++ S G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ V++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ I
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C     + A + F  M S GC
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K ++S G  P+  +++I++   
Sbjct: 378 LLEQMLS-HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C  GR      ++ ++++    P+ VTF +LI                       C PD 
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          N+  ++F  
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  ++ + V +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 241 VNHAKELFVSMESMG 255
              A+EL   + S G
Sbjct: 617 AKEAQELLSELCSRG 631



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +F  ++  L         L +   ++  G  P    + +++   C+ G    G
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG----G 161

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           F    R+L +             K C  D    N +++ +C+QG VD+A  L  K+    
Sbjct: 162 FRNSVRVLEAMHA----------KGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG 211

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            + ++V+Y +V++G C A  W + + L  EM+     PN+VTFN ++  LC+NG  +   
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +L  M +HG  PD   Y T++DG C  G +  A E+   M S G
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A T+  ++ GLC +G +  A E+  +M  K   P    Y  ++   C +  +  + R+
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M  +G   +    N++++ +C+ G +DEA  LL  +   G   D  +YN +L G C+
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  + C
Sbjct: 229 AKRWGDVEELMDEMVRVDC 247



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+ YT   ++   C  GR++    VL          D ++F    K C P    Y+ I++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVL----------DEMSF----KGCAPIPPMYHVILE 154

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             C+ G    +  +   M  K    +      V+   C     +EA  L  ++   G + 
Sbjct: 155 AACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEA 214

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V++N ++  LC   +  +   L+D M++    P+  T+NTL+   C  G      E+ 
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 275 AQMSEHGC 282



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C+ G   +            V PN  T+  V+RG C      +A  +  E
Sbjct: 80  VAYNAMVAGYCRAG---QLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  P    ++VI++  C++G    +  +L+ M   G   D    N +L+  C  G 
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGC 196

Query: 241 VNHAKELFVSMESMGC 256
           V+ A  L   +   GC
Sbjct: 197 VDEAVGLLRKLAFFGC 212



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VV Y +++ G+C A    +            V PN  TF  ++  LC  G++ +A  +LD
Sbjct: 79  VVAYNAMVAGYCRA---GQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G  P    Y+ +L+  C +G   ++  +  +M + GC
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGC 177


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 134/238 (56%), Gaps = 20/238 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           ++S+N +L CL++    D ++SL+K +   N   +FP+L T + ++N +CK+G ++   +
Sbjct: 151 LTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARL 210

Query: 93  VLGRILRSCFTPDVVTFTSLI----------KVC-------KPDAITYNTIIDGLCKQGF 135
              RILR    PD+ T+TSL+          + C       + +A++Y  +I GLC+ G 
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGK 270

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A E + +M++    P V TYT ++   C +    EA  LF EM ++G +PNV T+ V
Sbjct: 271 LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTV 330

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           ++D LCK G+MDEA  +L+ M++ GV P    +N L+  +C  G +  A  +   MES
Sbjct: 331 LIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMES 388



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ +++  L ++      LSLF  +   G  P++YT+++LI+  CK GR+     +
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKM 347

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           L  ++     P VV F +LI                      KVC P+  TYN +I G C
Sbjct: 348 LNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVC-PNVRTYNELICGFC 406

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +   +D+A  L  KM +  + P+VVTY ++I G C     + A RLF  M+  G  P+  
Sbjct: 407 RGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQW 466

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TFN  M  LC+ G++ EA  +L+ + +  V+ +   Y  L+DG+C  G++ HA  LF  M
Sbjct: 467 TFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526

Query: 252 ESMGC 256
            +  C
Sbjct: 527 LAEEC 531



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + + M+    +P  V  FN ++G   K    +  + +   + S  + P++ T++ 
Sbjct: 342 DEALKMLNEMVEKGVAPS-VVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE 400

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI  FC+   +     +L +++ S  +PDVVT+ +LI  +C+                  
Sbjct: 401 LICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG 460

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+N  +  LC+ G V +A ++   +K+K+VK N   YT++I G+C A     A 
Sbjct: 461 FSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAA 520

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKM----------------------------- 206
            LF  M+ +   PN +TFNV++D L K GK+                             
Sbjct: 521 SLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEV 580

Query: 207 ------DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                 D A+ +L+ +I  G +P+  TY   +  +C  GR+  A+E+ + +++ G
Sbjct: 581 LKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEG 635



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 121/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + + M+    SP  V ++N ++  L +    D+   LF+ +   G  PD +T + 
Sbjct: 412 DRAMALLNKMVESKLSPD-VVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNA 470

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            + C C+MGRV     +L  +       +   +T+LI                     + 
Sbjct: 471 FMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P++IT+N +IDGL K+G V  A  L   M   +VKP + TY  ++       D++ A 
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRAN 590

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   ++  G QPNVVT+   +   C  G+++EA  ++  +   GV  D+F YN L++ +
Sbjct: 591 EILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAY 650

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G ++ A  +   M   GC
Sbjct: 651 GCMGLLDSAFGVLRRMFGTGC 671



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 44/266 (16%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +F  ML     P  ++ FN+M+  L K       + L + +    + P L+T++IL+
Sbjct: 519 AASLFKRMLAEECLPNSIT-FNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILV 577

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
               K         +L R++ S + P+VVT+T+ IK                C QG +++
Sbjct: 578 EEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIK--------------AYCSQGRLEE 623

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+E+ +K+K++ V  +   Y  +I  +      + A  +   M   G +P+ +T++++M 
Sbjct: 624 AEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMK 683

Query: 199 ELCKNGKMDEASS-----------------------------LLDLMIQHGVRPDAFTYN 229
            L       E S+                             L + M + G  P+  TY+
Sbjct: 684 HLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYS 743

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMG 255
            L++G C  GR+N A  L+  M   G
Sbjct: 744 KLINGLCKVGRLNVAFSLYHHMREGG 769



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 4/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ IT NT+++  CK G +  A+  F+++      P++ TYTS++ G+C  +D   A  +
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGV 246

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M     + N V++  ++  LC+ GK+ EA      M + G  P   TY  L+   C 
Sbjct: 247 FCVM----PRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCE 302

Query: 238 TGRVNHAKELFVSMESMGC 256
           +GR   A  LF  M   GC
Sbjct: 303 SGRELEALSLFGEMRERGC 321



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+++   G  P+L T+S LIN  CK+GR++  F +   +     +P  +   SL+  C 
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSC- 784

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                        CK G   +A  L   M + +   ++ +Y  +I G     +  +A+ +
Sbjct: 785 -------------CKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAV 831

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           F  ++  G   + V + V++D L K G +D+ S LL+LM ++G R    TY+ L+ 
Sbjct: 832 FCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 110/273 (40%), Gaps = 50/273 (18%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++   +         +    +  ++ + G+  D + +++LIN +  MG +   F V
Sbjct: 603 PNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGV 662

Query: 94  LGRILRSCFTPDVVTFTSLIKV-------------------------------------- 115
           L R+  +   P  +T++ L+K                                       
Sbjct: 663 LRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGI 722

Query: 116 ------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
                       C P+  TY+ +I+GLCK G ++ A  L+  M++  + P+ + + S++ 
Sbjct: 723 TTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLS 782

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             C    + EA  L   MM+     ++ ++ +++  L +    ++A ++   +++ G   
Sbjct: 783 SCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNY 842

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D   +  L+DG   TG V+   EL   ME  GC
Sbjct: 843 DEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGC 875



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++++ ++  L K    +   SL+  +   G+ P    H+ L++  CK+G       +
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796

Query: 94  LGRILRSCFTPDVVTFTSLI-----KVCKP----------------DAITYNTIIDGLCK 132
           L  ++       + ++  LI     ++ K                 D + +  +IDGL K
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
            G+VD+  EL   M+    + +  TY+ +++
Sbjct: 857 TGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FN ++  L      +  L L + L   GL PD+YT +ILIN  CK+G    G  +
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 427

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  S   PD VT+  LI                       C    +TYNTIID LCK
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCK 487

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +++A+E+F +M    +  + VT+ ++I G C A   ++A  L  +M+ +G+QP+ +T
Sbjct: 488 QMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNIT 547

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A +L   M 
Sbjct: 548 YNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607

Query: 253 SMG 255
             G
Sbjct: 608 IKG 610



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 121/248 (48%), Gaps = 21/248 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P  ++F  ++    +    +  L +  ++  TG  P   T ++LIN +CKMGRV  
Sbjct: 224 HAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVED 283

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIID 128
               + + +   F PD VT+ + +  +C+                    PD  TYNT+I+
Sbjct: 284 ALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 343

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K G +D+AK +  +M D+   P+  T+ ++I   C  N   EA  L  E+  +G+ P
Sbjct: 344 CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSP 403

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V TFN++++ LCK G       L + M   G  PD  TYN L+D  C  G++ +A +L 
Sbjct: 404 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLL 463

Query: 249 VSMESMGC 256
             MES GC
Sbjct: 464 KEMESNGC 471



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 22/269 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G I   +   AL +   M+    SP  V+  N+++    K    +  L   ++  + G 
Sbjct: 238 QGFIEEGSIEAALRVKTKMMETGCSPTRVT-VNVLINGYCKMGRVEDALGYIQKEIADGF 296

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD  T++  ++C C+ G VSH   V+  +L+    PDV T+ ++I              
Sbjct: 297 EPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 356

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  + C PD  T+NT+I  LC Q  +++A +L  ++  K + P+V T+  +I   C
Sbjct: 357 IVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 416

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D +   RLF EM   G  P+ VT+N+++D LC  GK+  A  LL  M  +G      
Sbjct: 417 KVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTV 476

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNT++D  C   R+  A+E+F  M++ G
Sbjct: 477 TYNTIIDALCKQMRIEEAEEVFDQMDAHG 505



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       + LF+ + S+G  PD  T++ILI+  C MG++ +   +
Sbjct: 403 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDL 462

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      VT+ ++I  +CK                      A+T+NT+IDGLCK
Sbjct: 463 LKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCK 522

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++P+ +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 523 AKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVT 582

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  LL  M   G+RP    YN ++        +  A  LF  M 
Sbjct: 583 YGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMT 642

Query: 253 SMG 255
            +G
Sbjct: 643 EVG 645



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  LA+      + S++  +   G+ PD+ T + LI   C+  +V    ++L  + 
Sbjct: 163 YNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 222

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C P  +T N +I+G CK G V+
Sbjct: 223 SHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVE 282

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     K      +P+ VTY + +   C     + A ++   M+ +G  P+V T+N ++
Sbjct: 283 DALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI 342

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + L KNG++DEA  +++ M+  G  PD  T+NTL+   C   R+  A +L
Sbjct: 343 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+  + +F+ M     +P  V+ +NI++  L         L L K + S G      T++
Sbjct: 421 PHLGIRLFEEMKSSGCAPDEVT-YNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYN 479

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     +   VTF +LI  +CK                 
Sbjct: 480 TIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKE 539

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P  ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 540 GLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVA 599

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L   M  +G++P    +N ++  L +   + +A SL   M + G  PDA TY  +  G
Sbjct: 600 LKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRG 659

Query: 235 FCLTGR-VNHAKELFVSMESMG 255
            C  G  +  A +  V M + G
Sbjct: 660 LCRGGGPIKEAFDFLVEMVNKG 681



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 15/199 (7%)

Query: 47  AKNKHYDTVLSLFK-RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           A+ + +D  + L + +LN+ G+  D   ++ L+N   +  R+        ++L S +   
Sbjct: 135 ARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM--------KLLESVYNE- 185

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
               T   +  +PD +T NT+I  LC+   V  A  +  +M    V P+  T+T++++GF
Sbjct: 186 ---MTD--RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGF 240

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                   A R+  +MM+ G  P  VT NV+++  CK G++++A   +   I  G  PD 
Sbjct: 241 IEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQ 300

Query: 226 FTYNTLLDGFCLTGRVNHA 244
            TYNT +   C  G V+HA
Sbjct: 301 VTYNTFVHCLCQNGHVSHA 319



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V+ +   Y  ++      +     + ++ EM D+G+QP+VVT N ++  LC+  ++  A 
Sbjct: 156 VQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAV 215

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +L+ M  H V PD  T+ TL+ GF   G +  A  +   M   GC
Sbjct: 216 LMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGC 261


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N++L  + +    D  + L ++L   G   D+ +++ ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
               P++VTF +LI                       C PD   Y TIIDG+CK+G ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E+  +M    +KPNVV Y +V++G C A  W EA+ L  EM  +    + VTFN+++D
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+NG +D    LL+ M+ HG  PD  TY T+++GFC  G ++ A  L  SM S GC
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 57/290 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R+  +P  V+ FN ++G L +N  ++ V  +  +++  G  PD+  ++ +I+  
Sbjct: 238 LMDEMVRVDCAPNIVT-FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDV----------------------------------- 106
           CK G +     +L R+      P+V                                   
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 107 VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VTF  L+                       C PD ITY T+I+G CK+G +D+A  L   
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KPN V+YT V++G C A  W +A+ L  +M+ QG  PN VTFN +++ LCK G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL   M + G
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++ S G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ V++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ I
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++++   + D +    +R DA  YN ++   C     + A + F  M S GC
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K ++S G  P+  +++I++   
Sbjct: 378 LLEQMLS-HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C  GR      ++ ++++    P+ VTF +LI                       C PD 
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          N+  ++F  
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  ++ + V +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 241 VNHAKELFVSMESMG 255
              A+EL   + S G
Sbjct: 617 AKEAQELLSELCSRG 631



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P PP   +F  ++  L         L +   ++  G  P    + +++   C+ G    G
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG----G 161

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           F    R+L +             K C  D    N +++ +C+QG VD+A  L  K+    
Sbjct: 162 FRNSVRVLEAMHA----------KGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG 211

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            + ++V+Y +V++G C A  W + + L  EM+     PN+VTFN ++  LC+NG  +   
Sbjct: 212 CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +L  M +HG  PD   Y T++DG C  G +  A E+   M S G
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A T+  ++ GLC +G +  A E+  +M  K   P    Y  ++   C +  +  + R+
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M  +G   +    N++++ +C+ G +DEA  LL  +   G   D  +YN +L G C+
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 238 TGRVNHAKELFVSMESMGC 256
             R    +EL   M  + C
Sbjct: 229 AKRWGDVEELMDEMVRVDC 247



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+ YT   ++   C  GR++    VL          D ++F    K C P    Y+ I++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVL----------DEMSF----KGCAPIPPMYHVILE 154

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             C+ G    +  +   M  K    +      V+   C     +EA  L  ++   G + 
Sbjct: 155 AACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEA 214

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V++N ++  LC   +  +   L+D M++    P+  T+NTL+   C  G      E+ 
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 275 AQMSEHGC 282



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C+ G   +            V PN  T+  V+RG C      +A  +  E
Sbjct: 80  VAYNAMVAGYCRAG---QLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  P    ++VI++  C++G    +  +L+ M   G   D    N +L+  C  G 
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGC 196

Query: 241 VNHAKELFVSMESMGC 256
           V+ A  L   +   GC
Sbjct: 197 VDEAVGLLRKLAFFGC 212



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VV Y +++ G+C A    +            V PN  TF  ++  LC  G++ +A  +LD
Sbjct: 79  VVAYNAMVAGYCRA---GQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G  P    Y+ +L+  C +G   ++  +  +M + GC
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGC 177


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++ +++  L K+      L +F  +   G+ PD+  +S L++  C+ GR+        
Sbjct: 146 VFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFK 205

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +     + DV T+ SLI                     +   PDA T+  +IDGLCK+G
Sbjct: 206 EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 265

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A+++   M  K  +P+++TY +++ G C      +A +LF  + D+G++ NV ++N
Sbjct: 266 KVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYN 325

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++++  CK+ K+DEA  L + M   G++P   TYNTL+   C +GRV  A++LFV M++ 
Sbjct: 326 ILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTC 385

Query: 255 G 255
           G
Sbjct: 386 G 386



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 23/245 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            P  V+   ++ G   +N   D V  LF  +   GLF D  T+ ILIN  CK  +     
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAV-QLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI 132

Query: 92  VVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGL 130
            +  ++  +C   DV T+  +I  +CK                    PD + Y++++DGL
Sbjct: 133 KLHEKMKGNC-KGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 191

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G + +A E F +M+ + +  +V TY S+I G   A  W E       M+D+G  P+ 
Sbjct: 192 CRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 251

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF +++D LCK GK+ EA  +L+LM   G  PD  TYNTL++G CL G++  A +LF S
Sbjct: 252 FTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFES 311

Query: 251 MESMG 255
           +   G
Sbjct: 312 LADRG 316



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 33/284 (11%)

Query: 1   ERLKSSGEGDITTI-----------TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN 49
           E++K + +GD+ T               EAL +F  M+     P  V   ++M G L + 
Sbjct: 136 EKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG-LCRF 194

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
                 L  FK +   G+  D+YT++ LI+   + G        L  ++   F+PD  TF
Sbjct: 195 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTF 254

Query: 110 TSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
           T LI  +CK                    PD +TYNT+++GLC  G ++ A +LF  + D
Sbjct: 255 TILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLAD 314

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           + +K NV +Y  +I G+C     +EA RLF EM  +G++P+ VT+N ++  LC++G++  
Sbjct: 315 RGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRT 374

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           A  L   M   G      TY  LLDG C  G +  A +LF S++
Sbjct: 375 AQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIK 418



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I + M       P + ++N ++  L      +    LF+ L   G+  ++++++IL
Sbjct: 269 EAQQILELM-HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN +CK  ++   F +   +      P         K  KP  +TYNT+I  LC+ G V 
Sbjct: 328 INGYCKDQKIDEAFRLFEEM-----RP---------KGLKPSTVTYNTLIGALCQSGRVR 373

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A++LF++M+       + TY  ++ G C      EA  LF  +     +PN+  F++++
Sbjct: 374 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILL 433

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D +C+ GK++EA    D + ++G+ PD   YN L++G C  G ++ A +L   ME  GC
Sbjct: 434 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 492



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 14/218 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++    K++  D    LF+ +   GL P   T++ LI   C+ GRV        
Sbjct: 321 VFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRV-------- 372

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R  +  F  ++ T    +K+      TY  ++DGLCK G +++A +LF  +K    KPN+
Sbjct: 373 RTAQKLFV-EMQTCGQFLKLS-----TYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNI 426

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             ++ ++ G C A    EA + F E+   G++P+ + +N++++ LC  G + EA  LL  
Sbjct: 427 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 486

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           M + G  PD+ T+N ++        ++ A +L   M +
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 524



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F  + +     P +  F+I+L  + +    +     F  ++  GL PD   ++I
Sbjct: 408 EEAIDLFQSIKKTE-HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNI 466

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C  G +S    +L ++                K C PD+IT+N II  L K+  +
Sbjct: 467 LINGLCNKGMLSEAVKLLWQMEE--------------KGCLPDSITFNVIIQNLLKENEI 512

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            +A +L  +M+++N  P+    + ++    +   W+ A       + +GV
Sbjct: 513 HEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 562


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K +       LF+   + G  P + T++ +I+  CK GR+ +   +
Sbjct: 238 PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 297

Query: 94  LGRILRSC-FTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
              ++R     PD+ T+++LI                       C PD +TYNT++DGLC
Sbjct: 298 YDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLC 357

Query: 132 KQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K G  DKA E+F KM   NV  PNV+TYT +I  FC  +   +A +L  EM  + + P+ 
Sbjct: 358 KSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDA 417

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTF  ++ +LCK  ++DEA  L +  I    +PD+  +NT+L G+C   R++ AK+L   
Sbjct: 418 VTFTTVIQKLCKESRIDEAHELFE-SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDR 476

Query: 251 MESMGC 256
           M   GC
Sbjct: 477 MLDSGC 482



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 16/222 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+ IM+  L K++  D  ++LFK++    ++PD+ T+  LI+   K  RV   + +
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
                            +  K C P  +TYNT+IDGLCK G ++ A  L+  M ++ ++K
Sbjct: 263 FEE--------------ARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLK 308

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P++ TY+++I G   +N   +A  L+ EM+D G  P+VVT+N ++D LCK+G  D+A  +
Sbjct: 309 PDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEI 368

Query: 213 LDLM-IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              M + +   P+  TY  L+D FC   R+  A +L   ME 
Sbjct: 369 FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEG 410



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 17/224 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N ++    K       L+LF  +  +G+   L +H+I++   C  G++S  + V
Sbjct: 135 PDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGI-AVLRSHNIVLRGLCSGGKISMAWEV 193

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                          F  +  +  P+ I+Y  +IDGLCK   VDKA  LF +M DK + P
Sbjct: 194 ---------------FKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYP 238

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTY ++I G        EA  LF E   +G  P VVT+N ++D LCK G+++ A +L 
Sbjct: 239 DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLY 298

Query: 214 DLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D M++   ++PD FTY+ L++G  L+ R   A EL+  M   GC
Sbjct: 299 DDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGC 342



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 23/228 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL ++D M+R     P + +++ ++  L  +   +    L++ +  TG  PD+ T++ L+
Sbjct: 294 ALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLL 353

Query: 79  NCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLI-KVCK------------------- 117
           +  CK G       +  ++ + +   P+V+T+T LI + CK                   
Sbjct: 354 DGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSL 413

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PDA+T+ T+I  LCK+  +D+A ELF  +  K  KP+ V + +++ G+C     ++AK+
Sbjct: 414 LPDAVTFTTVIQKLCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKK 472

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           L   M+D G  P + T+  ++   C+ G+  +A  +   MI+ G  P+
Sbjct: 473 LHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 34/177 (19%)

Query: 109 FTSLIK-VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV---------------- 151
           F S +K V +PD ++YNT+++G  K G V KA  LF +MKD  +                
Sbjct: 125 FQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSHNIVLRGLCSG 184

Query: 152 -----------------KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
                             PN+++YT +I G C +   ++A  LF +M+D+ + P+VVT+ 
Sbjct: 185 GKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYG 244

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++D L K  ++ EA  L +     G  P   TYNT++DG C  GR+ +A  L+  M
Sbjct: 245 ALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 35/169 (20%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           T N ++    K   V+ A  LF +   KNV +P+ V+Y +++ GF  A D  +A  LF E
Sbjct: 104 TCNNLLSVYVKARRVEDA-HLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGE 162

Query: 181 MMDQGV---------------------------------QPNVVTFNVIMDELCKNGKMD 207
           M D G+                                  PN++++ +++D LCK+ K+D
Sbjct: 163 MKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVD 222

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +A +L   M+   + PD  TY  L+DG     RV  A +LF    + GC
Sbjct: 223 KAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 271


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN ++  L      +  L L +++   G+ PD+YT +ILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+ +LI                       C    ITYNTIIDGLCK
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M  + +  N +T+ ++I G C     ++A  L  +M+ +G+QPN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNIT 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L+ M  +G   D  TY TL++G C  GR   A ++   M 
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMR 593

Query: 253 SMG 255
             G
Sbjct: 594 IKG 596



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D M++     P V ++NI++ CL KN   +    +  ++   G  PD+ T + LI
Sbjct: 305 ALKVMDVMVQ-EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C   R+     +  ++     +PDV TF  LI                       C 
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYNT+ID LC  G + KA +L   M+      + +TY ++I G C      EA+ +
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M  QG+  N +TFN ++D LCK+ K+D+A  L++ MI  G++P+  TYN++L  +C 
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCK 543

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A ++  +M + G
Sbjct: 544 QGDIKKAADILETMTANG 561



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +    +  L +  R+   G      T ++LIN +CK+GRV      
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + + +   F PD +T+ + +  +C+                    PD  TYN +++ LCK
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M D+   P++ T+ ++I   C  N   EA  L  ++  +GV P+V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYNTL+D  C  G++  A +L   ME
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 253 SMGC 256
           S GC
Sbjct: 454 STGC 457



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 21/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  L +      + S++  + + G+ PD+ T + L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 99  RSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVD 137
                PD  TFT+L++                      C    +T N +I+G CK G V+
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A     +      +P+ +TY + + G C  +    A ++   M+ +G  P+V T+N+++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKNG+++EA  +L+ M+  G  PD  T+NTL+   C   R+  A +L
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       L LF+ + ++G  PD  T++ LI+  C +G++     +
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDL 448

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  +      +T+ ++I  +CK                     +AIT+NT+IDGLCK
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A  L  +M  + ++PN +TY S++  +C   D  +A  +   M   G + +VVT
Sbjct: 509 DKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK G+   A  +L  M   G+RP    YN +L        +  A  LF  M 
Sbjct: 569 YGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMA 628

Query: 253 SMG 255
            +G
Sbjct: 629 EVG 631



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 22/245 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ AL +F+ M     +P  V+ +N ++  L         L L K + STG      T++
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVT-YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            +I+  CK  R+     V  ++     + + +TF +LI  +CK                 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISE 525

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ ITYN+I+   CKQG + KA ++   M     + +VVTY ++I G C A     A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   M  +G++P    +N ++  L +   + +A SL   M + G  PDA TY  +  G
Sbjct: 586 LKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645

Query: 235 FCLTG 239
            C  G
Sbjct: 646 LCRGG 650



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +T+NT++  LC+   V  A  +  +M  + V P+  T+T++++GF        A R
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M++ G     VT NV+++  CK G++++A   +   I  G  PD  TYNT ++G C
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC 297

Query: 237 LTGRVNHAKELFVSMESMG 255
               V HA ++   M   G
Sbjct: 298 QNDHVGHALKVMDVMVQEG 316



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 23/213 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +FD M     S   ++ FN ++  L K+K  D    L  ++ S GL P+  T++ 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++  +CK G +     +L  +  + F  DVVT+ +LI                     K 
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEA 174
            +P    YN ++  L ++  +  A  LF +M +    P+ +TY  V RG C       EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
               +EM+D+G  P   +F ++ + L   G  D
Sbjct: 657 FDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDD 689



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 67/128 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D + YN +++ L +   +   + ++ +M  + +KP+VVT+ ++++  C A+    A  
Sbjct: 143 QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM  +GV P+  TF  +M    + G ++ A  +   M++ G      T N L++G+C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 237 LTGRVNHA 244
             GRV  A
Sbjct: 263 KLGRVEDA 270



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++ +D    Q   D A +L L        ++ + V Y  ++      +     + ++ EM
Sbjct: 113 HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM 172

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G++P+VVTFN +M  LC+  ++  A  +L+ M   GV PD  T+ TL+ GF   G +
Sbjct: 173 GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSI 232

Query: 242 NHAKELFVSMESMGC 256
             A  +   M  MGC
Sbjct: 233 EAALRVKARMLEMGC 247


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 128/265 (48%), Gaps = 31/265 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
           ++A+ IF    R     P V + NI++    + +  D  L LF  +     L P+  T++
Sbjct: 55  DQAMAIF----RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYT 110

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
            +I C+CKM R+     +L     SC + DV+  TS+                       
Sbjct: 111 AIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEK 168

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K  KPD + +N II G CK G V +A E+   +      PN VTYT++I GFC + + +E
Sbjct: 169 KSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSE 228

Query: 174 AKRLF--IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           A +LF  +   D   +PNVVTFN ++  LCK  +++ A  L+  M    +R D FTY TL
Sbjct: 229 ALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTL 288

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DG C  GR +    +F  M   GC
Sbjct: 289 MDGLCKQGRTSEVSRVFEEMLREGC 313



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 26/223 (11%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           ++ Y  +L + ++ ++    PD+   +++I+ FCK GRV   + +L  ++     P+ VT
Sbjct: 156 DEAYQLLLDMVEKKSAK---PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212

Query: 109 FTSLIK-VCK----------------------PDAITYNTIIDGLCKQGFVDKAKELFLK 145
           +T+LI   CK                      P+ +T+N +I GLCK   ++ A EL  +
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQ 272

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MK ++++ +  TYT+++ G C     +E  R+F EM+ +G  P+VVT+  ++   CK G 
Sbjct: 273 MKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + +A  ++  M+  G+ PD  TY  LL+G    G+V  A E F
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFF 375



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 25/259 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+    + P + ++N+++    K         + + L S G  P+  T++ 
Sbjct: 156 DEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTT 215

Query: 77  LINCFCKMGRVSHGFVVLGRILRS---CFTPDVVTFTSLIK-VCKPDAI----------- 121
           LI+ FCK G +S    +  ++L S      P+VVTF +LI  +CK D +           
Sbjct: 216 LIDGFCKSGNLSEALQLF-KVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274

Query: 122 ---------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                    TY T++DGLCKQG   +   +F +M  +   P+VVTYT+++   C A    
Sbjct: 275 ARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQ 334

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+++   M+ +G+ P+V T+ V+++ L +NGK+  A+   + +++    P A  Y+ L+
Sbjct: 335 DAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALV 394

Query: 233 DGFCLTGRVNHAKELFVSM 251
            G C    V+ A + +V M
Sbjct: 395 RGCCKAALVDEAVKYYVEM 413



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 53/238 (22%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV----VTFTSLIKV--------- 115
           P+ +T S+LI   CK GR+        ++L     P++    +   SL +          
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 116 -----CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVI------- 162
                C P  IT N +I+G C+   +DKA ELF +M K+  + P   TYT++I       
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 163 --------------------------RGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNV 195
                                     RGFC A   +EA +L ++M++ +  +P++V +NV
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           I+   CK G++ EA  +L+ ++  G  P+A TY TL+DGFC +G ++ A +LF  + S
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSS 238



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 17  NEALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EAL +F  +  R H + P V +FN ++  L K    +    L K++ +  L  D +T++
Sbjct: 227 SEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYT 286

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L++  CK GR S    V   +LR              + C P  +TY T++   CK G 
Sbjct: 287 TLMDGLCKQGRTSEVSRVFEEMLR--------------EGCNPSVVTYTTLVHAHCKAGS 332

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A+++   M  K + P+V TYT ++ G         A   F +++ +   P  V ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++   CK   +DEA      M+   + PD  T   L++  C  GR +
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 22/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL ++  +L      P V ++  ++    K+ + +  + +   +      P++ T+S 
Sbjct: 165 DEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 224

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CK G +     +  R+      P+VVT+T+LI                       
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD ++YN ++DG C+ G +++AK+LF +M  K+  P+ +TYT ++RGFC A+   EA+
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 176 RLFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            L   M    G+ P+VVT+++++    +  +  EA+  +  MI   V P+A TY++L+DG
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 404

Query: 235 FCLTGRVNHAKELFVSM 251
            C  GRV+HA E+  +M
Sbjct: 405 LCKAGRVDHAMEVLKNM 421



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 13/235 (5%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I   M+      P V ++  ++  L ++   D    + + +   G+ PD +T S LI  +
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C   +V     +   IL S                KPD +TY  +IDG CK G ++KA +
Sbjct: 159 CNARKVDEALKLYKEILTS-------------SSWKPDVVTYTALIDGFCKSGNLEKAMK 205

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +   M+ +   PNVVTY+S++ G C A D ++A  LF  M  +G  PNVVT+  ++  LC
Sbjct: 206 MLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLC 265

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              K+D A  L+D M      PD  +YN LLDG+C  GR+  AK+LF  M +  C
Sbjct: 266 AAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSC 320



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 127/275 (46%), Gaps = 57/275 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ +L  L K    D  L LF+R+ S G  P++ T++ LI+  C   +V    ++
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +  +C  PD V++ +L+                     K C PD ITY  ++ G C 
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 133 QGFVDKAKELFLKMKD------------------------------------KNVKPNVV 156
              +++A+ L   MK                                     +NV PN V
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 396

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY+S+I G C A   + A  +   M+++ V+P+V TFN ++  LC+ G MDEA  LL  M
Sbjct: 397 TYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 456

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             HG+ P   TY TLL+GF  TGR+  A ELF  M
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 17/182 (9%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P + T +I+I+ FCK  ++                     F  + +   P+  TYN +++
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALAC---------------FEKMREFVAPNERTYNVVVN 49

Query: 129 GLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GV 186
           GLCK     KA E+  +M+D K+V P++VTY++VI GFC   + + A  +  EM+ + G+
Sbjct: 50  GLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGI 109

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+VVT+  ++D LC++GKMD A  ++  M   GV PD FT++ L+ G+C   +V+ A +
Sbjct: 110 APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALK 169

Query: 247 LF 248
           L+
Sbjct: 170 LY 171



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 64/287 (22%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   S+N +L    +    +    LFK + +    PD  T++ L+  FC   R+     
Sbjct: 286 PPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARF 345

Query: 93  VLGRILRSC-FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
           +L  +  +    PDVVT++ ++                     +   P+A+TY+++IDGL
Sbjct: 346 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 405

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G VD A E+   M +K V+P+V T+ SVI   C   D +EA +L + M   G++P +
Sbjct: 406 CKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 465

Query: 191 VTFNVIMDE------------------------------------------LCKNGKMDE 208
           VT+  +++                                           LCK  ++D+
Sbjct: 466 VTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDK 525

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           A ++++ +      P       ++DG    GR   A +L  S+  +G
Sbjct: 526 AMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVG 572



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P  +T+  IIDG CK   + +A   F KM++  V PN  TY  V+ G C A   ++A 
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 176 RLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLD 233
            +  EM D + V P++VT++ +++  CK G+MD A  +L  M+ + G+ PD  TY +++D
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G C  G+++ A E+   M+  G
Sbjct: 122 GLCRDGKMDRACEMVREMKLKG 143


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P   ++NIM+         +  + L K+++ +GL PD+ T+S+LI  +CK+GR +     
Sbjct: 268 PDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSV 327

Query: 89  --------------------HGFVVLG-----RILRSCFTPDVVTFTSL---IKVC---- 116
                               HG+   G     R L      D + F      I +C    
Sbjct: 328 FDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 387

Query: 117 -------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                              +PD ++Y+T+I  LCK G V+ A   F +M  + + PN+++
Sbjct: 388 HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIIS 447

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +TS+I G C   +W + + L  EM+++G+ P+ +  N IMD LCK G++ EA    D++I
Sbjct: 448 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI 507

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             GV+PD  +YNTL+DG+C  G+++ + +    M S+G
Sbjct: 508 HIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIG 545



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R    P    +FNI++   AK+   D  ++ F  +   GL PD+ ++S +I+  
Sbjct: 362 LLDLMIR-DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHIL 420

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK GRV        +++    +P++++FTSLI                     +   PDA
Sbjct: 421 CKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 480

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I  NTI+D LCK+G V +A++ F  +    VKP+VV+Y ++I G+C+    +E+ +    
Sbjct: 481 IFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDR 540

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  G++P+  T+N +++   KNG++++A +L   M +  V+  A T N +L G    GR
Sbjct: 541 MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGR 600

Query: 241 VNHAKELFVSMESMG 255
           +  A+EL++ M   G
Sbjct: 601 IVAARELYMKMVDRG 615



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 68/310 (21%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           ++   +AL +FD +L     P  V +FN +L  +A+     +        +SLF  +  +
Sbjct: 27  SLGREDALNLFDELLP-QARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRS 85

Query: 66  GLFPDLYTHSILINCFCKMGRVSH-----------GF----VVLGRILRSC--------- 101
           G+        ILI CFC +GR+             G+    V L ++++           
Sbjct: 86  GVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDA 145

Query: 102 ------------FTPDVVTFTSLIKV------------------------CKPDAITYNT 125
                       +TPDV ++ +LIK                         C P+ ++YNT
Sbjct: 146 MDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNT 205

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG  K+G VDKA  LF +M  + + P+VVTY S+I G C A   ++A  +   M D+G
Sbjct: 206 VIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKG 265

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+  T+N+++   C  G+++EA  LL  M   G++PD  TY+ L+  +C  GR   A+
Sbjct: 266 VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEAR 325

Query: 246 ELFVSMESMG 255
            +F SM   G
Sbjct: 326 SVFDSMVRKG 335



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 20/231 (8%)

Query: 24  DYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF---PDLYTHSIL 77
           D + R  P     P V S+N ++  L   K     L L   + + G +   P++ +++ +
Sbjct: 147 DMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTV 206

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ F K G V   + +   ++     PDVVT              YN++IDGLCK   +D
Sbjct: 207 IDGFFKEGEVDKAYFLFHEMMGQGLPPDVVT--------------YNSLIDGLCKAQAMD 252

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  +   M DK V P+  TY  +IRG+C      EA RL  +M   G+QP+VVT+++++
Sbjct: 253 KAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLI 312

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              CK G+  EA S+ D M++ G +P++  Y+ LL G+   G +   ++L 
Sbjct: 313 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 363



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ++ +    P V S+N ++         D  +    R+ S GL PD +T++ L
Sbjct: 498 EAQDFFDMVIHI-GVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSL 556

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N + K GRV         + R  F  DV       K C   AIT N ++ GL + G + 
Sbjct: 557 LNGYFKNGRVEDALA----LYREMFRKDV-------KFC---AITSNIMLHGLFQAGRIV 602

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+EL++KM D+  +  + TY +V+ G C  +  +EA R+F ++  +  + +V TF++++
Sbjct: 603 AARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVI 662

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + L K G++DEA SL   M+  G  PD  TY+ ++      G +  +  LF+SME  GC
Sbjct: 663 NALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGC 721


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 137/260 (52%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +FD M R   +P  VS +N ++    K       L++F  +   G+ PD+ T + 
Sbjct: 242 EDARKMFDEMAREGLTPDGVS-YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS 300

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------KVCK 117
           LI+  C+ G +     ++G++       +  TFT+LI                   + C+
Sbjct: 301 LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECR 360

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P  + YN +I+G CK G +D+A+EL  +M+ K +KP+VVTY++++ G+C   D + A 
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+ +GV P+ +T++ ++  LC+  ++ +A  L + M+Q G++PD FTY TL+DG 
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G V  A  L   M   G
Sbjct: 481 CKEGNVQKALSLHDEMIKKG 500



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M +     P V +F  ++  + +  + +  ++L  ++   GL  + +T + 
Sbjct: 277 HEALAVFAEMAQ-KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ FC+ G +    + +  +      P VV +  LI                     K 
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD +TY+TI+ G CK G  D A EL  KM  K V P+ +TY+S+IRG C      +A 
Sbjct: 396 MKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF +M+  G+QP+  T+  ++D  CK G + +A SL D MI+ GV PD  TY+ L+DG 
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 236 CLTGRVNHAKELFVSM 251
             + R   A+ L   +
Sbjct: 516 SKSARTKEAQRLLFKL 531



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +    +R     P V ++N ++    +    D    L   +   G+ P L T + 
Sbjct: 171 EEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNT 230

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CK GR+     +   + R   T              PD ++YNT++ G CK G +
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLT--------------PDGVSYNTLVSGYCKAGCL 276

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  +F +M  K V P+VVT+TS+I   C A +   A  L  +M ++G++ N  TF  +
Sbjct: 277 HEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTAL 336

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D  C+NG +D+A   +  M +  ++P    YN L++G+C  GR++ A+EL   ME+ G
Sbjct: 337 IDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 135/248 (54%), Gaps = 34/248 (13%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST----GLFPDLYTHSILINCFCKMGRVS 88
            P + ++N +L  L+     D  L   +RL ++    G+ P++YT++IL+   C  G+  
Sbjct: 117 APSLLAYNAVLLALS-----DASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQRE 171

Query: 89  HGFVVLGRILRSCF-TPDVVTFTSLIKV---------------------CKPDAITYNTI 126
               V+G  +R     P+VVT+ +L+                        +P  +T+NT+
Sbjct: 172 EALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTV 231

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ++GLCK G ++ A+++F +M  + + P+ V+Y +++ G+C A   +EA  +F EM  +GV
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+VVTF  ++  +C+ G ++ A +L+  M + G+R + FT+  L+DGFC  G ++ A  
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDA-- 349

Query: 247 LFVSMESM 254
             ++M+ M
Sbjct: 350 -LLAMKEM 356



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 36/250 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F  ++    +N   D  L   K +    + P +  +++LIN +CK+GR+     ++  +
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                 PDVVT+++++   CK                    PDAITY+++I GLC++  +
Sbjct: 392 EAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ELF KM    ++P+  TYT++I G C   +  +A  L  EM+ +GV P+VVT++V+
Sbjct: 452 GDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVL 511

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---------------TLLDGFCLTGRV 241
           +D L K+ +  EA  LL  +      PD   Y                 LL GF + G +
Sbjct: 512 IDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLM 571

Query: 242 NHAKELFVSM 251
           N A +++ SM
Sbjct: 572 NQADKVYQSM 581



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 71/273 (26%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N+++    K    D    L   + + G+ PD+ T+S +++ +CK+G     F +
Sbjct: 363 PSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             ++L+    PD +T++SLI+ +C                    +PD  TY T+IDG CK
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYT--------------------------------- 159
           +G V KA  L  +M  K V P+VVTY+                                 
Sbjct: 483 EGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIK 542

Query: 160 -----------------SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                            ++++GF      N+A +++  M+D+  + +   ++V++   C+
Sbjct: 543 YEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCR 602

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            G + +A S    +++ G  P++ +  +L+ G 
Sbjct: 603 GGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 98/213 (46%), Gaps = 2/213 (0%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ ML++   P   + +  ++    K  +    LSL   +   G+ PD+ T+S+LI+  
Sbjct: 457 LFEKMLQLGLQPDEFT-YTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFVDKAK 140
            K  R      +L ++      PD + + +L+  C+     +   ++ G   +G +++A 
Sbjct: 516 SKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQAD 575

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +++  M D++ K +   Y+ +I G C   +  +A     +++  G  PN  +   ++  L
Sbjct: 576 KVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            + G   EA +++  ++      DA T   L+D
Sbjct: 636 FEEGMTVEADNVIQELLNCCSLADAETSKALID 668


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 17  NEALCIFDYMLRMHP-SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +E+L  F + L+ +P S P  SS N ++  L K KHYD V+S+  ++ S  +FP   + S
Sbjct: 39  SESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLS 98

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI  F    + S  F VLG I++  F  +V  F  L+K              G C+ G 
Sbjct: 99  ALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLK--------------GFCQSGD 144

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             KA +LF  MK   + P+ V+Y +VI G C      EAK LF EM     +PN VTF+ 
Sbjct: 145 SHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSA 204

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++D  CKNG ++E   LL+ M + G+  D F Y+ L+ GFC  G +   KELF  M
Sbjct: 205 LIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEM 260



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++    KN   +    L + +   GL  D++ +S LI+ FC  G +  G  +
Sbjct: 197 PNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKEL 256

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +LR   TP+VVT++ L+  +CK                    PD + Y  + DGL K
Sbjct: 257 FNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSK 316

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A ++   M  +  +PN VTY ++I G C     ++A  +   M  +G +P+VVT
Sbjct: 317 NGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVT 376

Query: 193 FNVIMDELCKNGKMDEASSLLDLMI--QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           ++ ++  LC  GK+DEA  LL+L++  +  ++PD F +N ++   C   R+ HAK ++ +
Sbjct: 377 YSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYT 436

Query: 251 MESMG 255
           M   G
Sbjct: 437 MVERG 441



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 24/252 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + D M++    P  V+ +N ++  L K    D  L + + +   G  PD+ T+S 
Sbjct: 321 SDAIKVLDLMVKRGEEPNNVT-YNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF--TPDVVTFTSLIK-VCK---------------- 117
           L+   C +G++     +L  ++   F   PDV  F  +I+ +CK                
Sbjct: 380 LVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVE 439

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                + +TYN +IDG    G + KA EL+    D  + PN  TYT +I G C     + 
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSI 499

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           AK LF +    G +P V  +N +M  LC+   +++A +L   M      PD  ++N ++D
Sbjct: 500 AKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIID 559

Query: 234 GFCLTGRVNHAK 245
           G    G V  AK
Sbjct: 560 GTLKAGDVESAK 571



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 14/219 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  + ++NI++            L L+K    +G+ P+  T+++LIN  CKM  +S    
Sbjct: 443 PSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLS---- 498

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
               I +  F     + T      +P    YNT++  LC++  V++A+ LF +M++ N  
Sbjct: 499 ----IAKGLFNKKRASGT------RPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHD 548

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+VV++  +I G   A D   AK L +EM++  + P+ +TF+++++   K G++DEA+SL
Sbjct: 549 PDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASL 608

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            + M+  G  PDA  +++LL G+ L G+      +   M
Sbjct: 609 YERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTH 74
           ++AL I + M +    P  V+   ++ G     K  D  + L   L S      PD++  
Sbjct: 356 DDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK-IDEAVDLLNLLMSKEFHIKPDVFAF 414

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---------- 117
           +++I   CK  R+ H   V   ++   F  ++VT+  LI       K+ K          
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVD 474

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P+A TY  +I+GLCK   +  AK LF K +    +P V  Y +++   C  +   +
Sbjct: 475 SGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQ 534

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ LF EM +    P+VV+FN+I+D   K G ++ A  LL  M+   + PD  T++ L++
Sbjct: 535 ARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILIN 594

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            F   G+++ A  L+  M S G
Sbjct: 595 RFLKLGQLDEAASLYERMVSCG 616



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   + NT+ID L K    D    +  KM   +V P   + +++I  F      + A  +
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              +M +G   NV  FN+++   C++G   +A  L  +M ++ + PD  +YNT+++G C 
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCK 176

Query: 238 TGRVNHAKELFVSMESMGC 256
             R+  AKELF  M+   C
Sbjct: 177 GKRLVEAKELFKEMKGGEC 195



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 21/220 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++ +++  L K +       LF +  ++G  P +  ++ L+   C+   V     +
Sbjct: 479 PNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNL 538

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   PDVV+F  +I                         PD IT++ +I+   K
Sbjct: 539 FQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLK 598

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  L+ +M      P+ V + S+++G+       +   +  +M D+ V  +   
Sbjct: 599 LGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKL 658

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            + I+  LC   K  +   +L    QH     +   N LL
Sbjct: 659 TSTILACLCNMSKDVDIEKILPKFSQHTSVGASIKCNELL 698


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 125/242 (51%), Gaps = 28/242 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P    S+N +L    +    +    LFK + +    PD  T++ L+  FC   R+     
Sbjct: 291 PADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARF 350

Query: 93  VLGRILRSC-FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
           +L  +  +    PDVVT++ ++                     +   P+A+TY+++IDGL
Sbjct: 351 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 410

Query: 131 CKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           CK G V+ A E+      KNV KP+VVTYT VI G C  +   EA  L  EM+++ V+P+
Sbjct: 411 CKAGRVNHAMEVL-----KNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPS 465

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           V TFN ++  LC+ G MDEA  LL  M  HG+ P   TY TLL+GF  TGR+  A ELF 
Sbjct: 466 VGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFE 525

Query: 250 SM 251
            M
Sbjct: 526 VM 527



 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 123/259 (47%), Gaps = 24/259 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I   M+      P V ++  ++  L ++   D    + + +   G+ PD +T S LI  +
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------------VCK 117
           C   +V     +   IL S    D V+ ++LI                           K
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TY  +IDG CK G ++KA ++   M+ +   PNVVTY+S++ G C A D ++A  L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M  +G  PNVVT+  ++  LC   K+D A  L+D M       D  +YN LLDG+C 
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCR 306

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR+  AK+LF  M +  C
Sbjct: 307 LGRIEEAKQLFKEMAAKSC 325



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 122/217 (56%), Gaps = 17/217 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ +L  L K    D  L LF+R+ S G  P++ T++ LI+  C   +V    ++
Sbjct: 222 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  +C              C  D ++YN ++DG C+ G +++AK+LF +M  K+  P
Sbjct: 282 MDEMTATC--------------CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLP 327

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMD--QGVQPNVVTFNVIMDELCKNGKMDEASS 211
           + +TYT ++RGFC A+   EA R  +E M    G+ P+VVT+++++    +  +  EA+ 
Sbjct: 328 DRITYTCLVRGFCNASRLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 386

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            +  MI   V P+A TY++L+DG C  GRVNHA E+ 
Sbjct: 387 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL 423



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 24/251 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++    P   +F+ ++      +  D  L L+K + ++    D  + S LI   C+  R
Sbjct: 107 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERR 166

Query: 87  VSHGFVVLGRI-LRS--CFTPDVVTFTSLI---------------------KVCKPDAIT 122
           +   + +   + +R    + PDVVT+T+LI                     + C P+ +T
Sbjct: 167 IGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT 226

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y++++ GLCK G +D+A +LF +M  K   PNVVTYT++I G C A+  + A+ L  EM 
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
                 + V++N ++D  C+ G+++EA  L   M      PD  TY  L+ GFC   R+ 
Sbjct: 287 ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLE 346

Query: 243 HAKELFVSMES 253
            A+ L  +M++
Sbjct: 347 EARFLLENMKT 357



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 90/141 (63%), Gaps = 2/141 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+  TYN +++GLCK     KA E+  +M+D K+V P++VTY++VI GFC   + + A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 177 LFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +  EM+ + G+ P+VVT+  ++D LC++GKMD A  ++  M   GV PD FT++ L+ G+
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   +V+ A +L+  + +  C
Sbjct: 127 CNARKVDEALKLYKEILTSSC 147



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+  T+++++N  CK    S  + VL  +                K   PD +TY+T+I+
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDG-------------KSVAPDLVTYSTVIN 53

Query: 129 GLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CKQG +D+A E+  +M  ++ + P+VVTYTSV+ G C     + A  +  EM  +GV+
Sbjct: 54  GFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVE 113

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  TF+ ++   C   K+DEA  L   ++    R DA + + L+ G C   R+  A EL
Sbjct: 114 PDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYEL 173

Query: 248 FVSME 252
           F  ME
Sbjct: 174 FQEME 178



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 34/268 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  + + M       P V +++I++   ++ K +       + + +  + P+  T+S 
Sbjct: 346 EEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 405

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK GRV+H   VL  + +    PDVVT+T +I                     K 
Sbjct: 406 LIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKR 461

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P   T+N++I  LC+ G +D+A +L + M    ++P +VTYT+++ GF        A 
Sbjct: 462 VEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 521

Query: 176 RLFIEMMDQGVQ-----PNVV---TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            LF E+M +  +      N+V    F+ ++  LCK  ++D+A ++++ +      P    
Sbjct: 522 ELF-EVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 580

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
              ++DG    GR   A +L  S+  +G
Sbjct: 581 CLAIVDGLLRAGRTEEAGKLINSISKVG 608



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 2/107 (1%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEA 209
           V PN  TY  V+ G C A   ++A  +  EM D + V P++VT++ +++  CK G+MD A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 210 SSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +L  M+ + G+ PD  TY +++DG C  G+++ A E+   M+  G
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKG 111



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGR 240
           M + V PN  T+NV+++ LCK     +A  +L  M     V PD  TY+T+++GFC  G 
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 241 VNHAKELFVSM 251
           ++ A E+   M
Sbjct: 61  MDRACEILREM 71


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-V 92
           P   +FN+++    K K  D+V  LF+ + +    P++ T+SILI+  CK G V     V
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDA---------------------ITYNTIIDGLC 131
            L    R C  P++ T+TS+I                            + YN++I GL 
Sbjct: 182 FLDMKSRGC-RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G  D A +LF +M  K ++P+ VT+TS++ G   A   +EA+R+F E  D G   +V 
Sbjct: 241 RSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVN 300

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +NV++D LCK+ ++DEA  +   + + G+ PD +T+N L+DG C +GR++ A  L   M
Sbjct: 301 LYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDM 360

Query: 252 ESMGC 256
           +  GC
Sbjct: 361 KRAGC 365



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 19/216 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+ +N+++  L K+K  D    +F  L   GL PD+YT + L++  CK GR+   F++LG
Sbjct: 299 VNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLG 358

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            + R+               C PD   YNT+IDGL K G V++A +L L+M+    +P+V
Sbjct: 359 DMKRAG--------------CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDV 404

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY ++I   C      +A RLF E+  +G   N VT+N I++ LC  G++DEA  L + 
Sbjct: 405 VTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNG 463

Query: 216 MIQHGV----RPDAFTYNTLLDGFCLTGRVNHAKEL 247
           M Q  V     PD  TY TLL+G    G    A  L
Sbjct: 464 MKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  M+  L K+ H D    LF+ + S GL      ++ LI+   + GR      +
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L     PD VTFTSL+                       C  D   YN +ID LCK
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCK 311

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A E+F ++++  + P+V T+ +++ G C +   ++A  L  +M   G  P+V  
Sbjct: 312 SKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTV 371

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D L K+G+++EA  LL  M   G  PD  TYNTL+D  C  GR+  A  LF  + 
Sbjct: 372 YNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEIS 431

Query: 253 SMG 255
           + G
Sbjct: 432 AKG 434



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 80/139 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  T+N +++   K   VD   +LF +M+++N  PNV+TY+ +I   C      +A +
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F++M  +G +PN+ T+  ++D L K+G +D+A  L + M   G+      YN+L+ G  
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240

Query: 237 LTGRVNHAKELFVSMESMG 255
            +GR + A +LF  M S G
Sbjct: 241 RSGRADAAAKLFREMLSKG 259



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 77/140 (55%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C   A  YN++ID   K G+  KA  ++  M    ++P+  T+  ++  F  A   +   
Sbjct: 85  CALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVW 144

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM +Q   PNV+T+++++D +CK G +++A  +   M   G RP+ FTY +++DG 
Sbjct: 145 KLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGL 204

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G V+ A  LF  M S G
Sbjct: 205 GKSGHVDKAFFLFEEMTSEG 224



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%)

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G    G ++K+ E   +M+          Y S+I  F  A    +A  ++  M   G++P
Sbjct: 63  GYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRP 122

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  TFNV+M+   K  ++D    L + M      P+  TY+ L+D  C  G V  A ++F
Sbjct: 123 DTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVF 182

Query: 249 VSMESMGC 256
           + M+S GC
Sbjct: 183 LDMKSRGC 190



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 26/134 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+ +N ++  L K+   +    L   + S G  PD+ T++ LI+  CK GR+     +
Sbjct: 367 PDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRL 426

Query: 94  LGRILRSCFTPDVVTFTSLIK-------------------------VCKPDAITYNTIID 128
              I    F  + VT+ +++                          V  PD +TY T+++
Sbjct: 427 FEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLN 485

Query: 129 GLCKQGFVDKAKEL 142
           G  + G  + A  L
Sbjct: 486 GARQAGLSELANSL 499


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 136/271 (50%), Gaps = 34/271 (12%)

Query: 18  EALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +AL + D M      P PP+  +++++    ++  Y + L + + L++ G   D    ++
Sbjct: 134 DALAVLDEMTSRSCVPIPPM--YHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNL 191

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +IN  C  G V  G  +L ++       D+V++ +++K                      
Sbjct: 192 VINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVH 251

Query: 116 ----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                     C PD   Y TIIDG+CK+G  + A E+  +M    +KPNVV Y +V++G 
Sbjct: 252 EALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGI 311

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A+ W +A+ L  EM  +    + VTFN+++D  C+NG +D    LL+ M++HG  PD 
Sbjct: 312 CSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDV 371

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            TY T+++GFC  G ++ A  L  +M S GC
Sbjct: 372 ITYTTVINGFCKEGLIDEAVMLLKNMPSCGC 402



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P +  +  ++  + K  H++    +  R+ S GL P++  ++ ++   C   R
Sbjct: 257 MAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADR 316

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
                 +L  + +     D VTF  L+                       C PD ITY T
Sbjct: 317 WEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTT 376

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+G CK+G +D+A  L   M     KPN ++YT V++G C    W +A+ L   M+ QG
Sbjct: 377 VINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG 436

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             PN VTFN I++ LCK G +++A  LL  M+ +G  PD  +Y+T++DG    G+   A 
Sbjct: 437 CLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEAL 496

Query: 246 ELFVSMESMG 255
           EL   M + G
Sbjct: 497 ELLNVMINKG 506



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNM 397

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C P+ +T+NTII+ LCK+G V
Sbjct: 398 PSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLV 457

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PNV+T++ +
Sbjct: 458 EQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSM 517

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G++D+   + D +    +R DA  YN ++   C     + A +    M S GC
Sbjct: 518 AFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGC 577



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 26  MLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           +L+  PS    P   S+ I+L  L   + +     L  R+   G  P+  T + +IN  C
Sbjct: 393 LLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLC 452

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K G V     +L ++L              +  C PD I+Y+T+IDGL K G  ++A EL
Sbjct: 453 KKGLVEQAIELLKQML--------------VNGCNPDLISYSTVIDGLGKAGKTEEALEL 498

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              M +K + PNV+TY+S+          ++  ++F  + D  ++ + V +N ++  LCK
Sbjct: 499 LNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCK 558

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             + D A   L  M+ +G  P+  TY  L+ G    G +  A++L   +
Sbjct: 559 RRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 31/219 (14%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRIL-RSCF-TPDVV-----------TFTSLIKV 115
           P+ YT+  ++   C  GR++    VL  +  RSC   P +             ++S ++V
Sbjct: 114 PNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRV 173

Query: 116 CKP--------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            +         D    N +I+ +C QG VD+  E+  K+     + ++V+Y +V++G C 
Sbjct: 174 LEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCA 233

Query: 168 ANDWNEAKRLFIEMM----------DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           A  W + + L  EM+            G  P++  +  I+D +CK G  + A+ +L  M 
Sbjct: 234 AKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMP 293

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +G++P+   YNT+L G C   R   A+EL   M    C
Sbjct: 294 SYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNC 332



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN ++ G C+ G V+ A+ L   +    V PN  TY  V+RG C      +A  +  E
Sbjct: 85  VDYNAMVAGYCRVGQVEAARRLAAAVP---VPPNAYTYFPVVRGLCGRGRIADALAVLDE 141

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +   P    ++VI++  C++G    A  +L+ +   G   D    N +++  C  G 
Sbjct: 142 MTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGC 201

Query: 241 VNHAKELFVSMESMGC 256
           V+   E+   +   GC
Sbjct: 202 VDEGLEMLRKLPLFGC 217



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I  LC  G   +  +    +        VV Y +++ G+C       A+RL   +  
Sbjct: 56  SALIRSLCVAG---RTADAVRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAV-- 110

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             V PN  T+  ++  LC  G++ +A ++LD M      P    Y+ +++  C +G  + 
Sbjct: 111 -PVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSS 169

Query: 244 AKELFVSMESMG 255
           A  +  ++ + G
Sbjct: 170 ALRVLEALHAKG 181


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 123/279 (44%), Gaps = 59/279 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+         D      +      +  D YT   LI   C  GR ++   V
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAA---RRWCAERAVERDAYTCDTLIRGLCGRGRTANALAV 182

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR    PDVVT+T L+                     K C PD +TYN +++G+C+
Sbjct: 183 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 242

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD A E    +     +PN V+Y  V++G C A  W +A+ L  EM  +G  PNVVT
Sbjct: 243 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 302

Query: 193 FNVIMDELCKNG-----------------------------------KMDEASSLLDLMI 217
           FN+++  LC+ G                                   KMD+A + LDLM+
Sbjct: 303 FNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 362

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G  PD  +YNTLL   C +G V+ A EL   ++  GC
Sbjct: 363 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 23/245 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L +    +  L + +++   G  P+  +++ L++ FCK  ++     
Sbjct: 297 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMA 356

Query: 93  VLGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            L  ++ R C+ PD+V++ +L+                     K C P  I+YNT+IDGL
Sbjct: 357 FLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 415

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G   +A EL  +M  K ++P+++TY+++  G C  +   +A R F ++ D G++PN 
Sbjct: 416 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 475

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G +  A++L   
Sbjct: 476 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDE 535

Query: 251 MESMG 255
           + S G
Sbjct: 536 LCSRG 540



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L   +   G  P++ T ++LI+  C+ G V     V
Sbjct: 263 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 322

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +I +   +P+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 323 LEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 382

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 383 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 442

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+  ++++A      +   G+RP+   YN ++ G C     + A +LF  M 
Sbjct: 443 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI 502

Query: 253 SMGC 256
             GC
Sbjct: 503 GNGC 506



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 19/177 (10%)

Query: 96  RILRSCFTPDVVTFTSLIK----------------VCKPDAITYNTIIDGLCKQGFVDKA 139
           R++ S   PD  T  +LIK                 C PD + YN ++ G C  G VD A
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAA 147

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           +       ++ V+ +  T  ++IRG C       A  +  EM+ +   P+VVT+ ++++ 
Sbjct: 148 RRW---CAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 204

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            CK     +A  LLD M   G  PD  TYN +++G C  GRV+ A E   ++ S GC
Sbjct: 205 TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 261


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 23/266 (8%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DL 71
           T   ++A+  F+ M R     P + +F I++ CL K    +    +F  + + G  P D 
Sbjct: 167 TRRADDAVTCFEIMKRKR-CKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDR 225

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------ 113
             H+ ++    K  RV     V G++ +  F PD + + ++I                  
Sbjct: 226 ALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 114 ---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
              K C P  +TY  +++ LCK G +++A+ELF  M     +PN V YTS+I GF  +  
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA  LF EM++ G +P+V+T  V++D LCK+G  ++A+   + M++ G +P+  TY T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ G    GRV +A  +   M + GC
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGC 431



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 21/231 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N M+  LAK  H    L +   + +    P   T+ IL+N  CK G +     
Sbjct: 257 PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEE 316

Query: 93  VLGRILRSCFTPDVVTFTSLI----------KVC-----------KPDAITYNTIIDGLC 131
           +   +  S F P+ V +TSLI          + C           +PD IT+  +IDGLC
Sbjct: 317 LFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  ++A + F +M     KPNVVTYT++I+G         A R+   M+  G  P+ V
Sbjct: 377 KSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSV 436

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           T+  ++D  CK G++DEA+ LLD + +    P+   Y++L++G C  G V 
Sbjct: 437 TYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVE 487



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 17/218 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM--GRVSHGFVVLGRI 97
           +I++G L K    D    +F+R+ S G  PD  T++ILIN  C+    RV   F +L  +
Sbjct: 511 SIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +  + PD VT+T L                GLCK G VD+A ++  +   +    +VV 
Sbjct: 570 EKVGYLPDAVTYTPLCI--------------GLCKIGEVDRAVKMLEEASSRGWNADVVA 615

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++  G CY    + A  LF EM+ QG  P+   +  I++ L K  K+++A    D MI
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI 675

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +P   TY  L+   C  G V+ A   F SM + G
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 122/263 (46%), Gaps = 25/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  IF  M+      P  +++NI++   C ++    +   +L   L   G  PD  T+
Sbjct: 523 DEACRIFQRMVS-EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-IKVC----------------- 116
           + L    CK+G V     +L       +  DVV +T+L   +C                 
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PDA  Y  II+GL K   ++ A + F +M  K  KP V TYT++++  C+A + +E
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701

Query: 174 AKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           A   F  M+ +G +  +V+ ++ ++   CK  K+D A  L + MI  G  P A T  +L 
Sbjct: 702 AFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLF 761

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           DG   +G+   A+EL   M + G
Sbjct: 762 DGLVRSGKTEKAQELLQEMAAGG 784



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 60/298 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL + D ML     P  V+ + I++  L K    +    LF+ + ++G  P+   ++ 
Sbjct: 277 QEALKVLDNMLAKACVPTEVT-YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+ F K GR+     +   ++ + + PDV+T T +I                       
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKP+ +TY TII GL K G V  A  +   M      P+ VTY  ++ GFC     +EA 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAA 455

Query: 176 RLFIEMMDQGVQPNVVTFNVIMD------------------------------------E 199
           +L  E+      PN+  ++ +++                                     
Sbjct: 456 QLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVG 515

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT--GRVNHAKELFVSMESMG 255
           LCK G++DEA  +   M+  G +PDA TYN L++G C +   RV  A  L   +E +G
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVG 573



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ +F  M+R     P  +++  ++  L K K  +     F  +   G  P + T++ 
Sbjct: 630 DRAVSLFQEMVR-QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 77  LINCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           L+   C  G V   F     +L R      V              + Y+ +I G CK   
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSV--------------MIYDALIHGFCKALK 734

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A +LF  M  +   P  VT  S+  G   +    +A+ L  EM   G  P+  TF  
Sbjct: 735 VDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTA 794

Query: 196 IMDELCKNGKMDEASSLLDLM 216
           I+D L K+   DE+  LL L+
Sbjct: 795 ILDGLRKS---DESGKLLKLV 812



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  TYN +++ L  +    +   +  +M    + PN  ++  +IR F      ++A   F
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCL 237
             M  +  +P++ TF +++D LCK G  ++A  +   M+  G V PD   +  ++     
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 238 TGRVNHAKELFVSMESMG 255
             RV  A+E+F  ME  G
Sbjct: 238 AKRVKEAREVFGQMEKCG 255


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F+ M++   +P  V ++N ++  L K    +T   LFK +   G  P   +++ 
Sbjct: 61  EEARLLFEKMVKQRINPN-VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK   +     V  +++RS               C P+ +TY T+IDGL K G V
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSN--------------CVPNVVTYTTLIDGLSKSGKV 165

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A E+   M  K V PNV TY+ +I GFC     +EA +L  +M+ QG+ P VVT+N++
Sbjct: 166 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 225

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LC+  K+++A  L   M Q    P   TYNTLL   C   +++ A  L+  M + GC
Sbjct: 226 LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 285



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 14/224 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           +PP   ++  ++  L K K  D  L+  + + + G+ PD + ++ +++  C+  +V    
Sbjct: 5   APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEAR 64

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           ++  ++++    P+VVT              YNT+I+GLCK   ++ A ELF +M  K  
Sbjct: 65  LLFEKMVKQRINPNVVT--------------YNTLINGLCKAWRIETAYELFKEMAGKGY 110

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P  V+Y ++I GFC   D   AK +F +M+     PNVVT+  ++D L K+GK+  A+ 
Sbjct: 111 VPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAE 170

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +LD M++ GV P+  TY+ L+DGFC   RV+ A +L   M + G
Sbjct: 171 VLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 214



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 78/145 (53%)

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           + +   PDA+TY  I++ LCK   +D A     +M  + +KP+   Y  V+ G C     
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA+ LF +M+ Q + PNVVT+N +++ LCK  +++ A  L   M   G  P   +YNTL
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DGFC    +  AK++F  M    C
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNC 145


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 23/266 (8%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DL 71
           T   ++A+  F+ M R     P + +F I++ CL K    +    +F  + + G  P D 
Sbjct: 167 TRRADDAVTCFEIMKRKR-CKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDR 225

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------ 113
             H+ ++    K  RV     V G++ +  F PD + + ++I                  
Sbjct: 226 ALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 114 ---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
              K C P  +TY  +++ LCK G +++A+ELF  M     +PN V YTS+I GF  +  
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA  LF EM++ G +P+V+T  V++D LCK+G  ++A+   + M++ G +P+  TY T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ G    GRV +A  +   M + GC
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGC 431



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 21/232 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N M+  LAK  H    L +   + +    P   T+ IL+N  CK G +     
Sbjct: 257 PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEE 316

Query: 93  VLGRILRSCFTPDVVTFTSLI----------KVC-----------KPDAITYNTIIDGLC 131
           +   +  S F P+ V +TSLI          + C           +PD IT+  +IDGLC
Sbjct: 317 LFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  ++A + F +M     KPNVVTYT++I+G         A R+   M+  G  P+ V
Sbjct: 377 KSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSV 436

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           T+  ++D  CK G++DEA+ LLD + +    P+   Y++L+ G C  G V +
Sbjct: 437 TYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVEN 488



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 17/218 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM--GRVSHGFVVLGRI 97
           +I++G L K    D    +F+R+ S G  PD  T++ILIN  C+    RV   F +L  +
Sbjct: 511 SIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                  ++V +        PDA+TY  +  GLCK G VD+A ++  +   +    +VV 
Sbjct: 570 -------EMVGYL-------PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA 615

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++  G CY    + A  LF EM+ QG  P+   +  I++ L K  K+++A    D MI
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI 675

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +P   TY  L+   C  G V+ A   F  M + G
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 122/263 (46%), Gaps = 25/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  IF  M+      P  +++NI++   C ++    +   +L   L   G  PD  T+
Sbjct: 523 DEACRIFQRMVS-EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTY 581

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-IKVC----------------- 116
           + L    CK+G V     +L       +  DVV +T+L   +C                 
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PDA  Y  II+GL K   ++ A + F +M  K  KP V TYT++++  C+A + +E
Sbjct: 642 QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701

Query: 174 AKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           A   F  M+ +G +  +V+ ++ ++   CK  K+D A  L + MI  G  P A T  +L 
Sbjct: 702 AFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLF 761

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           DG   +G+   A+EL   M + G
Sbjct: 762 DGLVRSGKTEKAQELLQEMAAGG 784



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ +F  M+R     P  +++  ++  L K K  +     F  +   G  P + T++ 
Sbjct: 630 DRAVSLFQEMVR-QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 77  LINCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           L+   C  G V   F    G + R      V              + Y+ +I G CK   
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSV--------------MIYDALIHGFCKALK 734

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A +LF  M  +   P  VT  S+  G   +    +A+ L  EM   G  P+  TF  
Sbjct: 735 VDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTA 794

Query: 196 IMDELCKNGKMDEASSLLDLM 216
           I+D L K+   DE+  LL L+
Sbjct: 795 ILDGLRKS---DESGKLLKLV 812



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  TYN +++ L  +    +   +  +M    + PN  ++  +IR F      ++A   F
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCL 237
             M  +  +P++ TF +++D LCK G  ++A  +   M+  G V PD   +  ++     
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 238 TGRVNHAKELFVSMESMG 255
             RV  A+E+F  ME  G
Sbjct: 238 AKRVKEAREVFGQMEKCG 255


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M R H   P V + N+++G L K         +F  +   G  PD++++ I+
Sbjct: 311 EAVRVFKEM-RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIM 369

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +N +   G +     +   +L     PD+ TF+ LIK                       
Sbjct: 370 LNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGV 429

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC      +AK 
Sbjct: 430 KPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKE 489

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L +E+M+ G++ ++V F+ I++ LCK G++ +A ++ DL +  G  PDA  Y+ L+DG+C
Sbjct: 490 LILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYC 549

Query: 237 LTGRVNHAKELFVSMESMG 255
           L G++  A  +F +M S G
Sbjct: 550 LVGKMEKALRVFDAMVSAG 568



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+ IML   A       +  LF  +   G+ PD+YT S+L
Sbjct: 346 EARDVFDTM-AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVL 404

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      PDVVT+T++I  +C+                   
Sbjct: 405 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 464

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   Y+ +I G C  G + KAKEL L++ +  ++ ++V ++S+I   C      +A+ 
Sbjct: 465 APDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQN 524

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F   ++ G  P+ V ++++MD  C  GKM++A  + D M+  G+ P+   Y TL++G+C
Sbjct: 525 IFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYC 584

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++    LF  M   G
Sbjct: 585 KIGRIDEGLSLFREMLQKG 603



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD++++S
Sbjct: 131 PELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 190

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +PDVV +T++I          K C       
Sbjct: 191 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMV 250

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TY++++  LCK   + KA+    +M +K V P+  TY ++I G+     W 
Sbjct: 251 QRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 310

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT N++M  LCK GK+ EA  + D M   G  PD F+Y  +L
Sbjct: 311 EAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 371 NGYATKGCLVDMTDLF 386



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P +A  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 46  TLRPEDAHDLLDELQR-RGTPVLGRDLNGFLAALARAPSSAACGSGPALAVALFNRAASR 104

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    D++    L+K      
Sbjct: 105 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAK 164

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      P+VV
Sbjct: 165 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVV 224

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            YT+VI  F    D N+A  LF EM+ +G+ P++VT++ ++  LCK   M +A + L  M
Sbjct: 225 AYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQM 284

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV PD +TYN L+ G+  TG+   A  +F  M 
Sbjct: 285 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 320



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 124/295 (42%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y +  
Sbjct: 415 DKAMIIFNEM-RDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 77  LINCFCKMGR-------------------------VSHGFVVLGRIL--RSCFT------ 103
           LI  FC  G                          + +    LGRI+  ++ F       
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533

Query: 104 --PDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PD V ++ L+                        +P+ + Y T+++G CK G +D+  
Sbjct: 534 QHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGL 593

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M  K +KP+ + Y  +I G   A     AK  F EM + G+  N  T+N+++   
Sbjct: 594 SLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            KN   DEA  L   +    V+ D  T NT++ G   T RV  AK+LF S+   G
Sbjct: 654 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG 708



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A  IFD  + +   P  V    +M G CL      +  L +F  + S G+ P++  +  
Sbjct: 521 DAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNVVVYGT 578

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N +CK+GR+  G  +   +L+              K  KP  I YN IIDGL   G  
Sbjct: 579 LVNGYCKIGRIDEGLSLFREMLQ--------------KGIKPSTILYNIIIDGLFVAGRT 624

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK  F +M +  +  N  TY  V+RGF     ++EA  LF E+    V+ +++T N +
Sbjct: 625 VPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTM 684

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRP 223
           +  + +  +++EA  L   + + G+ P
Sbjct: 685 IAGMFQTRRVEEAKDLFASISRSGLVP 711


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K+++    + +F  +   GL P++ T++ILIN  C  G+V     +
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++ S   P+VVT   LI   CK                    P+A+TY T+ID  CK
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  L+  M D+ + P V TY  +I G C   D   A+ L  EM+ + +  +VVT
Sbjct: 346 DGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVT 405

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D LCK G+  +A  LLD M + G+ P   TYNTL+DG+C  G +  A  +   ME
Sbjct: 406 YNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRME 465

Query: 253 SMG 255
             G
Sbjct: 466 RKG 468



 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF---V 92
           V SFNI++  L K    +    + + +   G+ P++ T++ LI+ +CKMGR+   +    
Sbjct: 155 VISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADA 214

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +L  ++     P+ VT+  LI   CK                    P+ +TYN +I+GLC
Sbjct: 215 ILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLC 274

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G VD+A  L  +M   +++PNVVT+  +I GFC     NEA  LF +M  QGV PN +
Sbjct: 275 SDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAM 334

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK+G+M++A +L ++MI  G+ P+  TYN L+ G C  G V  A+ L   M
Sbjct: 335 TYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM 394

Query: 252 ES 253
            S
Sbjct: 395 VS 396



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F  M R     P V ++NI++  L  +   D  ++L  ++ S+ L P++ TH++LI
Sbjct: 247 AMRVFGEMQR-QGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           N FCK   V+    +   + +    P+ +T+T+LI   CK                    
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+  TYN +I GLC++G V  A+ L  +M  K +  +VVTY  +I   C   +  +A +L
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKL 425

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM ++G+ P+ VT+N +MD  C+ G +  A  +   M + G + +  T+N L+ GFCL
Sbjct: 426 LDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCL 485

Query: 238 TGRVNHAKELFVSMESMG 255
            GR+  A  L   M   G
Sbjct: 486 KGRLEDANGLLNEMLERG 503



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 22/236 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D M+      P V + N+++    KNK  +  ++LF  +   G+ P+  T++ 
Sbjct: 280 DEAVALRDQMVS-SDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTT 338

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ +CK GR+   F +   ++     P+V T+  LI                     K 
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D +TYN +ID LCK+G   KA +L  +M +K + P+ VTY +++ G+C   +   A 
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAAL 458

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +   M  +G Q NVVT NV++   C  G++++A+ LL+ M++ G+ P+  TY  +
Sbjct: 459 IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 22/211 (10%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T NEA+ +F+ M +    P  ++ +  ++    K+   +   +L+  +   G+FP++ T+
Sbjct: 313 TVNEAINLFNDMEKQGVDPNAMT-YTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTY 371

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK---------------- 117
           + LI   C+ G V     ++  ++    + DVVT+  LI  +CK                
Sbjct: 372 NCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFE 431

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P  +TYNT++DG C++G +  A  +  +M+ K  + NVVT+  +I+GFC      +
Sbjct: 432 KGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLED 491

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           A  L  EM+++G+ PN  T+ +I +E+ + G
Sbjct: 492 ANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   I+ N ++ GL K+      + ++ +M  + ++ NV+++  V+ G C     N A  
Sbjct: 117 KLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGD 176

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +  +M   GV PNV+T+N ++D  CK    GKM +A ++L  M+  G+ P+  TYN L+D
Sbjct: 177 VIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILID 236

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           GFC    V+ A  +F  M+  G
Sbjct: 237 GFCKDENVSGAMRVFGEMQRQG 258



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 119 DAITYNTIIDGLCKQGFVDKAK-----ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           D+   N+I+  +    FV   K     E F +  D   K ++++   ++ G    ++  +
Sbjct: 79  DSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGD 138

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            + ++ EM+ + ++ NV++FN++++ LCK GK++ A  +++ M   GV P+  TYNTL+D
Sbjct: 139 MEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLID 198

Query: 234 GFCLTGRV 241
           G+C  GR+
Sbjct: 199 GYCKMGRI 206


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F+ M++   +P  V ++N ++  L K    +T   LFK +   G  P   +++ 
Sbjct: 166 EEARLLFEKMVKQRINPN-VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK   +     V  +++RS               C P+ +TY T+IDGL K G V
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSN--------------CVPNVVTYTTLIDGLSKSGKV 270

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A E+   M  K V PNV TY+ +I GFC     +EA +L  +M+ QG+ P VVT+N++
Sbjct: 271 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 330

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LC+  K+++A  L   M Q    P   TYNTLL   C   +++ A  L+  M + GC
Sbjct: 331 LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 390



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 16/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  + + M R   +PP   ++  ++  L K K  D  L+  + + + G+ PD + ++ 
Sbjct: 97  EEARELIEKMARY--APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNF 154

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++  C+  +V    ++  ++++    P+VVT              YNT+I+GLCK   +
Sbjct: 155 VLSGLCQEEKVEEARLLFEKMVKQRINPNVVT--------------YNTLINGLCKAWRI 200

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF +M  K   P  V+Y ++I GFC   D   AK +F +M+     PNVVT+  +
Sbjct: 201 ETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTL 260

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D L K+GK+  A+ +LD M++ GV P+  TY+ L+DGFC   RV+ A +L   M + G
Sbjct: 261 IDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 319



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 20/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FN +    AK    + V  +++ +   G       + ILI+C CK+G     + +
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK-------------------PDAITYNTIIDGLCKQ 133
           L  +    F    + ++++I  +CK                   PDA+TY  I++ LCK 
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKT 127

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D A     +M  + +KP+   Y  V+ G C      EA+ LF +M+ Q + PNVVT+
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N +++ LCK  +++ A  L   M   G  P   +YNTL+DGFC    +  AK++F  M  
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 247

Query: 254 MGC 256
             C
Sbjct: 248 SNC 250



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + V P   T+ +V  GF  A    + K ++  M++ G       + +++  LCK G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            DEA  LL  M     +  A  Y+T+++  C   RV  A+EL   M
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V S+N ++    + K  +  L L   +  +G    L T  ILI+ FCK G+
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNT 125
           +      L  +       D+V +TSLI+  C                     P AITYNT
Sbjct: 228 MDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G CK G + +A E+F  M ++ V+PNV TYT +I G C      EA +L   M+++ 
Sbjct: 288 LIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKD 347

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +PN VT+N+I+++LCK+G + +A  +++LM +   RPD  TYN LL G C  G ++ A 
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407

Query: 246 ELFVSM 251
           +L   M
Sbjct: 408 KLLYLM 413



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 21/237 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N ++  L ++++++   S ++++  T  F +  + S L+ C+ +M +    F VL  +L+
Sbjct: 76  NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 100 SCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
             F  +V     L+K +C+                    PD  +YNT+I G C+   ++K
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A EL  +MK      ++VT+  +I  FC A   +EA     EM   G++ ++V +  ++ 
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C  G++D   +L D +++ G  P A TYNTL+ GFC  G++  A E+F  M   G
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + + M+     P  V+ +NI++  L K+      + + + +      PD  T++IL
Sbjct: 335 EALQLLNLMIEKDEEPNAVT-YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 78  INCFCKMGRVSHGFVVLGRILR-SCFT-PDVVTFTSLIK-VCKP---------------- 118
           +   C  G +     +L  +L+ S +T PDV+++ +LI  +CK                 
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 119 ----DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
               D +T N +++   K G V+KA EL+ ++ D  +  N  TYT++I GFC     N A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L  +M    +QP+V  +N ++  LCK G +D+A  L + M +    PD  ++N ++DG
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G +  A+ L V M   G
Sbjct: 574 SLKAGDIKSAESLLVGMSRAG 594



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 23/234 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ I++    K    D  +   K +   GL  DL  ++ LI  FC  G +  G  +   +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
           L    +P  +T+ +LI+  CK                    P+  TY  +IDGLC  G  
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKT 333

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +L   M +K+ +PN VTY  +I   C      +A  +   M  +  +P+ +T+N++
Sbjct: 334 KEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 197 MDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  LC  G +DEAS LL LM++      PD  +YN L+ G C   R++ A +++
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIY 447



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 26/262 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHS 75
           +A+ I + M +    P  ++ +NI+LG L      D    L   +  +S+   PD+ +++
Sbjct: 370 DAVEIVELMKKRRTRPDNIT-YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYN 428

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
            LI+  CK  R+     +   ++      D VT   L+                      
Sbjct: 429 ALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDS 488

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K+ + ++ TY  +IDG CK G ++ AK L  KM+   ++P+V  Y  ++   C     ++
Sbjct: 489 KIVR-NSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A RLF EM      P+VV+FN+++D   K G +  A SLL  M + G+ PD FTY+ L++
Sbjct: 548 AWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            F   G ++ A   F  M   G
Sbjct: 608 RFLKLGYLDEAISFFDKMVDSG 629



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 21/234 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I+D ++    +   V++ NI+L    K    +  + L+K+++ + +  +  T++ 
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499

Query: 77  LINCFCKMG--RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +I+ FCK G   V+ G +   R+                   +P    YN ++  LCK+G
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRV----------------SELQPSVFDYNCLLSSLCKEG 543

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A  LF +M+  N  P+VV++  +I G   A D   A+ L + M   G+ P++ T++
Sbjct: 544 SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYS 603

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-GRVNHAKEL 247
            +++   K G +DEA S  D M+  G  PDA   +++L  +C++ G  +   EL
Sbjct: 604 KLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLTEL 656



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R+    P V  +N +L  L K    D    LF+ +     FPD+ + +I+I+   K G 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +L  + R+  +PD+               TY+ +I+   K G++D+A   F KM
Sbjct: 580 IKSAESLLVGMSRAGLSPDL--------------FTYSKLINRFLKLGYLDEAISFFDKM 625

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGK 205
            D   +P+     SV++      + ++   L  +++D+ +  +      +MD +C  +  
Sbjct: 626 VDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSAN 685

Query: 206 MDEASSLL 213
           MD A  LL
Sbjct: 686 MDLAKRLL 693



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%)

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           V  F   +      A   N ++  L +    + A   + KM + +   N V+ + ++  +
Sbjct: 58  VSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECY 117

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                   A  +   M+ +G   NV   N+++  LC+N +  +A SLL  M ++ + PD 
Sbjct: 118 VQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDV 177

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           F+YNT++ GFC    +  A EL   M+  GC
Sbjct: 178 FSYNTVIRGFCEGKELEKALELANEMKGSGC 208


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K    D    L+  ++   L P+  T+SILI+ FC+ GR+      
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+++      V  + SLI                     K  +P A T+ ++I G CK
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA +L+ KM D  + PNV T+T++I G C  N   EA  LF E++++ ++P  VT
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVT 542

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +NV+++  C++GK+D+A  LL+ M Q G+ PD +TY  L+ G C TGRV+ AK+ 
Sbjct: 543 YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDF 597



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+ +  SP   +   ++ G L K    D    L  ++   G  P+L+ ++ LIN  
Sbjct: 317 LMDEMVELGFSPTEAAVSGLVDG-LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSL 375

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKP---------------DAI---- 121
           CK G +    ++   +      P+ +T++ LI   C+                D I    
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETV 435

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             YN++I+G CK G +  A+ LF++M +K V+P   T+TS+I G+C      +A +L+ +
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNK 495

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+D G+ PNV TF  ++  LC   KM EAS L D +++  ++P   TYN L++G+C  G+
Sbjct: 496 MIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGK 555

Query: 241 VNHAKELFVSMESMG 255
           ++ A EL   M   G
Sbjct: 556 IDKAFELLEDMHQKG 570



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N+++  L K       + + + L   GL  D+ T+  L+  FC++ +   G  ++ 
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMD 319

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F+P     + L+              DGL KQG +D A EL +K+      PN+
Sbjct: 320 EMVELGFSPTEAAVSGLV--------------DGLRKQGKIDDAYELVVKVGRFGFVPNL 365

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y ++I   C   D ++A+ L+  M    ++PN +T+++++D  C++G++D A S  D 
Sbjct: 366 FVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDR 425

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MIQ G+    + YN+L++G C  G ++ A+ LF+ M + G
Sbjct: 426 MIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKG 465



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 139/363 (38%), Gaps = 126/363 (34%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD ++     P  V+ +N+++    ++   D    L + ++  GL PD YT+  L
Sbjct: 523 EASELFDELVERKIKPTEVT-YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPL 581

Query: 78  INCFCKMGRVS-------------------------HGFVVLGRILR----SC------- 101
           I+  C  GRVS                         HG+   GR++     SC       
Sbjct: 582 ISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641

Query: 102 ----------------------------------FTPDVVTFTSLIKV------------ 115
                                               PD V +TS+I              
Sbjct: 642 NMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFE 701

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-------- 158
                    C P+ +TY  +++GLCK G +D+A  LF +M+  NV PN +TY        
Sbjct: 702 CWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLT 761

Query: 159 --------------------------TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                                       +IRGFC    ++EA ++  EM + G+ P+ VT
Sbjct: 762 KEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVT 821

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++ E C++G +  +  L D M+  G+ PD   YN L+ G C+ G ++ A EL   M 
Sbjct: 822 YSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDML 881

Query: 253 SMG 255
             G
Sbjct: 882 RRG 884



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  ++  M  M+  P  ++ ++I++    ++   D  +S F R+   G+   +Y ++ 
Sbjct: 382 DKAELLYSNMSLMNLRPNGIT-YSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNS 440

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN  CK G +S    +   +      P   TFTSLI   CK                  
Sbjct: 441 LINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNG 500

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  T+  +I GLC    + +A ELF ++ ++ +KP  VTY  +I G+C     ++A 
Sbjct: 501 ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAF 560

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M  +G+ P+  T+  ++  LC  G++ +A   +D + +  V+ +   Y+ LL G+
Sbjct: 561 ELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGY 620

Query: 236 CLTGRVNHA 244
           C  GR+  A
Sbjct: 621 CQEGRLMEA 629



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 22/237 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+  FD M++       V ++N ++    K        SLF  + + G+ P   T + LI
Sbjct: 419 AISYFDRMIQ-DGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLI 477

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           + +CK  +V   F +  +++ +  TP+V TFT+LI                     +  K
Sbjct: 478 SGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIK 537

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  +TYN +I+G C+ G +DKA EL   M  K + P+  TY  +I G C     ++AK  
Sbjct: 538 PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDF 597

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             ++  Q V+ N + ++ ++   C+ G++ EA S    MIQ G+  D   +  L+DG
Sbjct: 598 IDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDG 654



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 56/276 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    K+        L+ ++   G+ P++YT + LI+  C   +++    +
Sbjct: 468 PTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASEL 527

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P  VT+  LI+  C+                    PD  TY  +I GLC 
Sbjct: 528 FDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCS 587

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA--------KR-------- 176
            G V KAK+    +  +NVK N + Y++++ G+C      EA        +R        
Sbjct: 588 TGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVC 647

Query: 177 -------------------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                              L  +M DQG++P+ V +  ++D   K G   +A    DLM+
Sbjct: 648 HAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMV 707

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
                P+  TY  L++G C  G ++ A  LF  M++
Sbjct: 708 TEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQA 743



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 112/224 (50%), Gaps = 22/224 (9%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           FD +  MH     P    +  M+   +K   +      +  + +   FP++ T++ L+N 
Sbjct: 665 FDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNG 724

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFT--------------------SLIKVCKPDA 120
            CK G +    ++  R+  +   P+ +T+                     +++K    + 
Sbjct: 725 LCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANT 784

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +T+N II G CK G   +A ++  +M +  + P+ VTY+++I  +C + +   + +L+  
Sbjct: 785 VTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDT 844

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           M+++G++P++V +N+++   C NG++D+A  L D M++ G+ PD
Sbjct: 845 MLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 21  CIFDYMLRMHPSPPPVSS--FNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           C+F + L  +      S+  FN+++   +  ++ +D V+ + K + +  L P++ T S L
Sbjct: 138 CVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVV-IVKLMFANNLLPEVRTLSAL 196

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N   K+ +    F+ +  +        V          +PD  T + ++  +C+     
Sbjct: 197 LNGLLKVRK----FITVWELFDESVNAGV----------RPDPYTCSAVVRSMCELKDFL 242

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AKE    M+      ++VTY  +I G C  +  +EA  +   +  +G+  +VVT+  ++
Sbjct: 243 RAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLV 302

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              C+  + +    L+D M++ G  P     + L+DG    G+++ A EL V +   G
Sbjct: 303 LGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFG 360


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 14/214 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++  L +         + + +   GL  D  T+++LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           ++   TP+VVT+T+L               DGLCKQG V  A EL  +M  K ++ N+ T
Sbjct: 452 VQKRVTPNVVTYTALS--------------DGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+I G C A +  +A R  I+M + G++P+V T+  I+  LC++ ++D A SLL  M+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G++P   TYN L++GFC++GRV   K L   M
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M     SPP V ++ IM+         +T + L   + + GL  +   ++ +
Sbjct: 271 DAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV 326

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I   C  G+VS    V+  ++      D   FT+++   C+                   
Sbjct: 327 IALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGL 386

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  +I+GLC+ G + +A+ +  +M+DK +  + VTYT +I G+C      EA  
Sbjct: 387 AADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFL 446

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M+ + V PNVVT+  + D LCK G +  A+ LL  M   G+  + FTYN+L++G C
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A    + M+  G
Sbjct: 507 KAGNLEQAMRTMIDMDEAG 525



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++G L ++K  D   SL + +   G+ P + T+++L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L               K   P+  TYN+++   C +  +    E++  M  + V P
Sbjct: 588 LEWMLE--------------KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP 633

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY  +I+G C A +  EA     EM+++G +    ++N ++  L K  K  EA  L 
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLF 693

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
           + M +  +  +   YN  +D
Sbjct: 694 EKMRKERLTAEPDVYNFYID 713



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           V  F S  K    D ++++ ++  LC       +  L L+++   + P+  +  +V+   
Sbjct: 184 VEQFISTYKAFSSDPVSFDLLL--LCL-----PSAPLLLRLRQYGISPSPESCNAVLCRL 236

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 +EA +LF E+ ++    N  ++N+++  LC  G++ +A  L D M      PD 
Sbjct: 237 ----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDV 285

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY  ++ G+C    +  A +L   M + G
Sbjct: 286 VTYGIMVHGYCTLSELETAIKLLSEMAARG 315


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 14/214 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++  L +         + + +   GL  D  T+++LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           ++   TP+VVT+T+L               DGLCKQG V  A EL  +M  K ++ N+ T
Sbjct: 452 VQKRVTPNVVTYTALS--------------DGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+I G C A +  +A R  I+M + G++P+V T+  I+  LC++ ++D A SLL  M+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G++P   TYN L++GFC++GRV   K L   M
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M     SPP V ++ IM+         +T + L   + + GL  +   ++ +
Sbjct: 271 DAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV 326

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I   C  G+VS    V+  ++      D   FT+++   C+                   
Sbjct: 327 IALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGL 386

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  +I+GLC+ G + +A+ +  +M+DK +  + VTYT +I G+C      EA  
Sbjct: 387 AADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFL 446

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M+ + V PNVVT+  + D LCK G +  A+ LL  M   G+  + FTYN+L++G C
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A    + M+  G
Sbjct: 507 KAGNLEQAMRTMIDMDEAG 525



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++G L ++K  D   SL + +   G+ P + T+++L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L               K   P+  TYN+++   C +  +    E++  M  + V P
Sbjct: 588 LEWMLE--------------KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP 633

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY  +I+G C A +  EA     EM+++G +    ++N ++  L K  K  EA  L 
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLF 693

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
           + M +  +  +   YN  +D
Sbjct: 694 EKMRKERLTAEPDVYNFYID 713



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           V  F S  K    D ++++ ++  LC       +  L L+++   + P+  +  +V+   
Sbjct: 184 VEQFISTYKAFSSDPVSFDLLL--LCL-----PSAPLLLRLRQYGISPSPESCNAVLCRL 236

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 +EA +LF E+ ++    N  ++N+++  LC  G++ +A  L D M      PD 
Sbjct: 237 ----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDV 285

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY  ++ G+C    +  A +L   M + G
Sbjct: 286 VTYGIMVHGYCTLSELETAIKLLSEMAARG 315


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 20/249 (8%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
            EGDI       AL +F+   +     P +  +N ++  L +       L +   +   G
Sbjct: 362 AEGDI-----ERALELFNEA-QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI 126
             PD++T++I+IN  CKMG +S   VV+   +   + PDV TF              NT+
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTF--------------NTL 461

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           IDG CK+  +D A +L  +M    + P+V+TY SV+ G C A    E    F EM+ +G 
Sbjct: 462 IDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGC 521

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +PN +T+N++++  CK  +++EAS ++  M Q G+ PDA ++NTL+ GFC  G ++ A  
Sbjct: 522 RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYL 581

Query: 247 LFVSMESMG 255
           LF  ++  G
Sbjct: 582 LFQKLDEKG 590



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K+           R+ + G  PD +T++ +I+ +CK G +     +
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD VT+ SLI                     K  KPD + YN+++ GLC+
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A ++  +M ++   P++ TY  +I G C   + ++A  +  + + +G  P+V T
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK  K+D A  L++ M  +G+ PD  TYN++L+G C  G+     E F  M 
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517

Query: 253 SMGC 256
             GC
Sbjct: 518 LKGC 521



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 133/237 (56%), Gaps = 22/237 (9%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           NI +  L ++   +  ++L +R+ +  + PD+ T++ L+   CK  +V      LGR++ 
Sbjct: 250 NIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMN 308

Query: 100 SCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
               PD  T+ ++I   CK                    PD +TY ++I+GLC +G +++
Sbjct: 309 QGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIER 368

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ELF + + K++KP++V Y S+++G C       A ++  EM+++G  P++ T+N+I++
Sbjct: 369 ALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIIN 428

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK G + +A+ +++  I  G  PD FT+NTL+DG+C   +++ A +L   M + G
Sbjct: 429 GLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG 485



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 15/224 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L    ++D    ++ R+ + G+ PD  TH++ +  FC  GR      
Sbjct: 103 PPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPH---- 158

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V  R+LRS             + C      Y T++ GL   G    A+ LF +M  ++V 
Sbjct: 159 VALRLLRSLSE----------RGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVF 208

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+V T+ +V+   C   D  E+  L  +++ +G+  N  T N+ +  LC++G+++EA +L
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ M  + V PD  TYNTL+ G C   +V  A +    M + GC
Sbjct: 269 VERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGC 311



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++  L K  +      +       G  PD++T + LI+ +CK  ++     +
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 94  LGRILRSCFTPDVVTFTS---------------------LIKVCKPDAITYNTIIDGLCK 132
           + R+      PDV+T+ S                     ++K C+P+AITYN +I+  CK
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A  + ++M    + P+ V++ ++I GFC   D + A  LF ++ ++G      T
Sbjct: 538 INQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADT 597

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++        M  A  +   MI  G +PD +TY  L+DG C    V+ A      M 
Sbjct: 598 FNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMI 657

Query: 253 SMG 255
           S G
Sbjct: 658 SKG 660



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 62/250 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR---VSHG 90
           P V +FN ++    K    D+ L L +R+ + G+ PD+ T++ ++N  CK G+   V+  
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512

Query: 91  FVVLGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDG 129
           F  +  IL+ C  P+ +T+  LI                 ++C+    PDA+++NT+I G
Sbjct: 513 FEEM--ILKGC-RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHG 569

Query: 130 LCKQGFVDKAKELFLKMKDKNV-----------------------------------KPN 154
            C+ G +D A  LF K+ +K                                     KP+
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           + TY  ++ G C A + + A     EM+ +G  P++ TF  +++ L  N ++ EA +++ 
Sbjct: 630 LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIH 689

Query: 215 LMIQHGVRPD 224
           +M++ GV P+
Sbjct: 690 IMVRMGVVPE 699



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 38/177 (21%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------- 166
            C P A  YN I+D L    + D+A +++++M    V P+  T+T  ++ FC        
Sbjct: 101 ACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVA 160

Query: 167 --------------------------YANDWN-EAKRLFIEMMDQGVQPNVVTFNVIMDE 199
                                     YA+     A+ LF EM+ + V P+V TFN ++  
Sbjct: 161 LRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHA 220

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           LC+ G + E+ +LL  +++ G+  + FT N  + G C  GR+  A  L   +E MG 
Sbjct: 221 LCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL---VERMGA 274



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 36/227 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K    +    +  R+   GL PD  + + LI+ FC+ G +   +++
Sbjct: 523 PNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++    ++    TF  LI                     K  KPD  TY  ++DGLCK
Sbjct: 583 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCK 642

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV- 191
              VD+A     +M  K   P++ T+  ++      +  +EA  +   M+  GV P VV 
Sbjct: 643 AANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVVD 702

Query: 192 -----------TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                         ++++EL K G +   S     ++  GVR +  T
Sbjct: 703 TILSTDKKEIAAPKILVEELMKKGHI---SYRAYEVLHEGVRDNKLT 746



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT--YTSVIRGFCYANDWNEAKRLFI 179
            Y  +I  L   G +D   +  L     ++ P+ +   Y + I+ +  A     A   F 
Sbjct: 37  AYRALIRELVSAGRLDDV-DAALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFE 95

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M      P    +N IMD L      D+A  +   M+  GV PDA T+   L  FCLTG
Sbjct: 96  RMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTG 155

Query: 240 RVNHAKELFVSMESMGC 256
           R + A  L  S+   GC
Sbjct: 156 RPHVALRLLRSLSERGC 172


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+S+N+++    K+   +  L +  R+   G+ P+  T+  ++   C  G++     VLG
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           R L+S   PDVVT T LI                     K CKPD +TYN +I G CK G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A     K+     +P+V+++  ++R  C    W +A +L   M+ +G  P+VVTFN
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFN 325

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++++ LC+ G + +A ++L++M +HG  P++ ++N L+ GFC    ++ A E    M S 
Sbjct: 326 ILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSR 385

Query: 255 GC 256
           GC
Sbjct: 386 GC 387



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+ M R     P V ++N+++    K    D  +   K+L S G  PD+ +H++
Sbjct: 233 GQAMKLFNEM-RNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNM 291

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C  GR      +L  +LR              K C P  +T+N +I+ LC++G +
Sbjct: 292 ILRSLCSGGRWMDAMKLLATMLR--------------KGCLPSVVTFNILINFLCQKGLL 337

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  +   M      PN  ++  +I+GFC     + A      M+ +G  P++VT+N++
Sbjct: 338 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LCK+GK+D+A  +L  +   G  P   +YNT++DG    G+   A EL   M
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 452



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+  H   P   SFN ++      K  D  +   + + S G +PD+ T++IL+   CK G
Sbjct: 346 MMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDG 405

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           +V    V+L ++                K C P  I+YNT+IDGL K G  + A EL  +
Sbjct: 406 KVDDAVVILSQLSS--------------KGCSPSLISYNTVIDGLLKVGKAELAVELLEE 451

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K +KP+++T TSV+ G        EA + F  +    ++PN   +N I+  LCK+ +
Sbjct: 452 MCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQ 511

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              A   L  M+  G +P   TY TL+ G    G    A +L   + S G
Sbjct: 512 TSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 18/229 (7%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L +N   +      + + + G  PD+   + LI  FCK+GR  +   ++G +  S    D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 106 VVTFTSLIK-VCK-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           V ++  LI   CK                 P+A TY+ ++  LC +G + +A ++  +  
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
                P+VVT T +I   C  +   +A +LF EM ++G +P+VVT+NV++   CK G++D
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           EA   L  +  +G +PD  ++N +L   C  GR   A +L  +M   GC
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGC 317



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S N++L  L     +   + L   +   G  P + T +ILIN  C+ G +     V
Sbjct: 284 PDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNV 343

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +   TP+  +F  LI                     + C PD +TYN ++  LCK
Sbjct: 344 LEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCK 403

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A  +  ++  K   P++++Y +VI G         A  L  EM  +G++P+++T
Sbjct: 404 DGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 463

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              ++  L + GK+ EA      + +  +RP+AF YN+++ G C + + + A +    M 
Sbjct: 464 CTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMV 523

Query: 253 SMGC 256
           + GC
Sbjct: 524 AKGC 527



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 111/261 (42%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL + D   RM  SP   ++++ +L  L         + +  R   +  +PD+ T ++
Sbjct: 166 EEALRVLD---RMGVSPN-AATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTV 221

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+  CK   V     +   +      PDVVT+  LIK                      
Sbjct: 222 LIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYG 281

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD I++N I+  LC  G    A +L   M  K   P+VVT+  +I   C      +A 
Sbjct: 282 CQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKAL 341

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   M   G  PN  +FN ++   C    +D A   L++M+  G  PD  TYN LL   
Sbjct: 342 NVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTAL 401

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+V+ A  +   + S GC
Sbjct: 402 CKDGKVDDAVVILSQLSSKGC 422


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 121/219 (55%), Gaps = 14/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN ++  L K +  +  ++  K+++    FP L+T++ L++ F K+GR+    + L   
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +   F PD VT+TS              IIDGLCK G V++  E F +M+++  +P+ VT
Sbjct: 316 VERGFIPDAVTYTS--------------IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVT 361

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I GF  A    +A R++ +M+  G   + VT+N+I+D LCK G++ EA +    M 
Sbjct: 362 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAME 421

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G      TY+ L+DGFC  G V+ A ELF  M   GC
Sbjct: 422 ERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 460



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 17/215 (7%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K    D  + L   +  +   PD+   +++IN  C+  R+   F VL R +R+ 
Sbjct: 15  LLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKRLDEAFSVLERAVRAG 71

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                         C+PD +TYN  IDGLCK   VD A +L  KM +K   P  VTYT++
Sbjct: 72  --------------CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTAL 117

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + G   A   +EA  +  +M+++G  P + T+ V++D L K G+++EA  +   M+ +G 
Sbjct: 118 VDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           RPDAF Y  L+ G    G+++ A      M   GC
Sbjct: 178 RPDAFVYTALISGLAKIGKLDEALVYLNQMVENGC 212



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 22/236 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + D M    P  P + +F +++  L + K  D   S+ +R    G  PD  T+++
Sbjct: 26  DRAMLLLDEM----PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNV 81

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I+  CK  RV   F +L ++      P  VT+T+L              +DGL K G +
Sbjct: 82  FIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTAL--------------VDGLLKAGRL 127

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  +  +M +K   P + TYT VI G   A    EA+R+F++M+  G +P+   +  +
Sbjct: 128 DEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTAL 187

Query: 197 MDELCKNGKMDEASSLLDLMIQH----GVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  L K GK+DEA   L+ M+++    GV PD   +N ++   C +G +  A   F
Sbjct: 188 ISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYF 243



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 15/216 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NI+L  L K        + F  +   G    + T+S L++ FC  G VS    +  R+
Sbjct: 396 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 455

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L               + C+P+ ++YN II GLC+ G + KA   F K+  + + P+V T
Sbjct: 456 LD--------------RGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 501

Query: 158 YTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           + S + G C   D   +   LF  M+ QG  PN+ +++++MD +C+ G ++    +   M
Sbjct: 502 FNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEM 561

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV PD   +NTL+   C+ GRV+ A E+F  +E
Sbjct: 562 VSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE 597



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 38/168 (22%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
             +++GLCK G +D+A    L + +    P++V +T VI G C     +EA  +    + 
Sbjct: 13  TALLNGLCKTGQLDRA---MLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 184 QGVQPNVVTFNVIMDELC-----------------------------------KNGKMDE 208
            G +P+ VT+NV +D LC                                   K G++DE
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           A ++L+ M++ G  P   TY  ++DG    GRV  A+ +FV M   GC
Sbjct: 130 AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T  + + +F+ M+    SP  + S++I++  + +    +  L +F  + S G+ PD+   
Sbjct: 515 TVGDGVELFESMVSQGTSPN-LHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVF 573

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + LI   C  GRV     V               F  L +   PDA +Y +++D L +  
Sbjct: 574 NTLIRWLCIAGRVDEALEV---------------FRELERRSAPDAWSYWSLLDALSRCE 618

Query: 135 FVDKAKELFLKMKDKNVKPN 154
            +++A+ L   MK +   P 
Sbjct: 619 RMEEARLLSFHMKLQGCAPR 638


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 14/214 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++  L +         + + +   GL  D  T+++LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           ++   TP+VVT+T+L               DGLCKQG V  A EL  +M  K ++ N+ T
Sbjct: 452 VQKRVTPNVVTYTALS--------------DGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+I G C A +  +A R  I+M + G++P+V T+  I+  LC++ ++D A SLL  M+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G++P   TYN L++GFC++GRV   K L   M
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M     SPP V ++ IM+         +T + L   + + GL  +   ++ +
Sbjct: 271 DAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSV 326

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I   C  G+VS    V+  ++      D   FT+++   C+                   
Sbjct: 327 IALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGL 386

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  +I+GLC+ G + +A+ +  +M+DK +  + VTYT +I G+C      EA  
Sbjct: 387 AADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFL 446

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M+ + V PNVVT+  + D LCK G +  A+ LL  M   G+  + FTYN+L++G C
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  A    + M+  G
Sbjct: 507 KAGNLEQAMRTMIDMDEAG 525



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++G L ++K  D   SL + +   G+ P + T+++L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L               K   P+  TYN+++   C +  +    E++  M  + V P
Sbjct: 588 LEWMLE--------------KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP 633

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY  +I+G C A +  EA     EM+++G +    ++N ++  L K  K  EA  L 
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLF 693

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
           + M +  +  +   YN  +D
Sbjct: 694 EKMRKDRLTAEPDVYNFYID 713



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           V  F S  K    D ++++ ++  LC       +  L L+++   + P+  +  +V+   
Sbjct: 184 VEQFISTYKAFSSDPVSFDLLL--LCL-----PSAPLLLRLRQYGISPSPESCNAVLCRL 236

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 +EA +LF E+ ++    N  ++N+++  LC  G++ +A  L D M      PD 
Sbjct: 237 ----PLDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDV 285

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY  ++ G+C    +  A +L   M + G
Sbjct: 286 VTYGIMVHGYCTLSELETAIKLLSEMAARG 315


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L KN+ +D    LFK +   GL P+  T++ILI+  CK G +     +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++        V  + SLI   CK                    P A +Y+ +I GLC+
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A EL  +M ++ +  N  T+T++I GFC     +EA RLF +M+D  V PN VT
Sbjct: 456 NGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+++  C  G + +A  L D M++ G++PD +TY +L+ G CLT  V+ A E    +E
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 253 S 253
           +
Sbjct: 576 N 576



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 26  MLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           ++RM       S+  +N+++  L KN      + +   + + G+  D  T+  L+  FC+
Sbjct: 221 VVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCR 280

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           M  +     +   ++R  F P     + +I              D L K+  V++A  L 
Sbjct: 281 MEELEMALRITHDMIRLGFVPSEANCSFMI--------------DELRKKELVEEAFSLA 326

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            K+ D  + PNV  Y ++I   C    +++A RLF EM  +G++PN VT+ +++  LCK 
Sbjct: 327 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 386

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G +++A  L D M   G++   + YN+L++G+C  G ++ A+ L   M   G
Sbjct: 387 GMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E  C+    ++     P    +  M+  L+K ++    L+ + ++   G  P+  TH++L
Sbjct: 635 EKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVL 694

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCK 117
           IN  CK G +    ++   +L     P+  T+                    +++++   
Sbjct: 695 INNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
              +++N +I GLCK G + +A +L  K+ +    P+ ++Y+++I   C   D N+A  L
Sbjct: 755 ASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFEL 814

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G++P+VV +N+ +     +G+ D+A  +   MI+ GV+P+  TY  LL G  L
Sbjct: 815 WNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISL 874



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 26/258 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  +FD M+  +  P  V+ FN+M+   CL  N        L+ ++   GL PD YT+
Sbjct: 495 DEAARLFDKMIDSNVIPNEVT-FNVMIEGYCLVGNIR--KAFQLYDQMVEMGLKPDNYTY 551

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------------------I 113
             LI+  C    VS     +  +  S    +  + T+L                     +
Sbjct: 552 RSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAV 611

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +  K D +++  I+    KQ   +K+  LF +MK++ VKP+ + YT +I       +  +
Sbjct: 612 RGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQ 671

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A   + +M+  G  PN VT  V+++ LCK+G +  A  L   M+   V P+ FTYN  LD
Sbjct: 672 ALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLD 731

Query: 234 GFCLTGRVNHAKELFVSM 251
            F   G +  AK+L  +M
Sbjct: 732 YFATEGDMEKAKDLHSAM 749



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K + +     LF ++  +G+  D Y ++  I  +C+   +     ++ R+    
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES-- 226

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       +  K  A+ YN ++ GLCK   V +A E+   M +  V  + VTY ++
Sbjct: 227 ------------EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + GFC   +   A R+  +M+  G  P+    + ++DEL K   ++EA SL   +   G+
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+ F YN L+D  C   R + A  LF  M   G
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T + I+  L K      A++LF KM    V  +   YT+ IR +C + + + A+ L + M
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +GV+ + V +NV+M  LCKN ++ EA  + ++M+  GV  D  TY TL+ GFC    +
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 242 NHAKELFVSMESMG 255
             A  +   M  +G
Sbjct: 285 EMALRITHDMIRLG 298


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 131/283 (46%), Gaps = 60/283 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN+++G L  +   D    LF ++   G  P+ Y+  IL+  +C+ G  S G  +
Sbjct: 54  PETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           LG + R  F+P+ V + +LI   CK                    PD +T+N  I  LC 
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173

Query: 133 QGFVDKAKELFLKMKDKNV----KPNVVTYTSVIRGFCYANDWNEAKRLF---------- 178
            G V +A  +F  M+   V    +PN++TY  ++ GFC      EA+ LF          
Sbjct: 174 SGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLM 233

Query: 179 -------------------------IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                                     EM+D G++PNV ++N++MD LCKNG + +A  L+
Sbjct: 234 NRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLM 293

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LM   GV PD  TY TLL G+C TG+V+ A  +   M   GC
Sbjct: 294 RLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGC 336



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 14/250 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+R   SP   +  NI+L  L K         L +++N  G   D  T +I
Sbjct: 322 SEANNVLREMMRDGCSPNNYTC-NILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNI 380

Query: 77  LINCFCKMGRV-----------SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           +I+  C  G++           +HG   LG +  S     +V  +   K C PD I+Y+T
Sbjct: 381 VIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIG--LVDDSDSRKKCMPDLISYST 438

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           II GLCK G V +AK+ F++M  KN++P+   Y   I  FC     + A R+  +M  +G
Sbjct: 439 IISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKG 498

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
               + T+N ++  L    ++ E   L+D M + GV PD   YN +L   C  GRV  A 
Sbjct: 499 CNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAP 558

Query: 246 ELFVSMESMG 255
            +   M   G
Sbjct: 559 SVLDEMLQKG 568



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+MLG   K    +   +LF+++  +    +  +++I +    ++G++    +V
Sbjct: 198 PNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLV 257

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     P+V +              YN ++DGLCK G +  A+ L   M    V P
Sbjct: 258 LKEMVDMGMEPNVYS--------------YNIVMDGLCKNGVLFDARMLMRLMTSSGVLP 303

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTYT+++ G+C+    +EA  +  EMM  G  PN  T N+++  L K G++ EA  LL
Sbjct: 304 DTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELL 363

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G   D  T N ++DG C  G+++ A E+   M + G
Sbjct: 364 QKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHG 405



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 14/184 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P +Y +++L+    K GRV            S    D+V          P+  T+N +I 
Sbjct: 19  PSIYLYNVLLRSCTKEGRVD---------CVSWLCKDMVASG-----VSPETYTFNVLIG 64

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LC  G +D A+ELF KM +K  +PN  ++  ++RG+C A   ++   L  EM   G  P
Sbjct: 65  LLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSP 124

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N V +N ++   CK GK D+A  L+D M + G+ PD  T+N  +   C +G+V  A  +F
Sbjct: 125 NKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIF 184

Query: 249 VSME 252
             M+
Sbjct: 185 RDMQ 188



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 38/262 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +   M+ M    P V S+NI++  L KN        L + + S+G+ PD  T++ L
Sbjct: 253 EAQLVLKEMVDM-GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C  G+VS    VL  ++R                C P+  T N ++  L K+G + 
Sbjct: 312 LHGYCHTGKVSEANNVLREMMRDG--------------CSPNNYTCNILLYSLWKEGRIS 357

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------- 187
           +A+EL  KM +K    + VT   VI G C     ++A  +   M   G            
Sbjct: 358 EAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYI 417

Query: 188 -------------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                        P++++++ I+  LCK G++ EA      M+   ++PD+  Y+  +  
Sbjct: 418 GLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHS 477

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G+++ A  +   ME  GC
Sbjct: 478 FCKEGKISSAFRVLKDMEKKGC 499



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 55/277 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++ ++  L K          F  +    L PD   + + I+ FCK G++S  F V
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +      + T+ SLI                     +   PD   YN ++  LC+
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN-------------------- 172
            G V  A  +  +M  K + PN+ +++ +I+ FC A D++                    
Sbjct: 551 GGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALY 610

Query: 173 --------------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
                         +AK LF   +D+        +  ++D LCK+ K+D+AS +L  +I 
Sbjct: 611 SLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLID 670

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G   D  ++  ++DG    G  + A EL   M  M 
Sbjct: 671 KGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMA 707



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P    YN ++    K+G VD    L   M    V P   T+  +I   C +   ++A+ L
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M ++G +PN  +F +++   C+ G   +   LL  M + G  P+   YNTL+  FC 
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 238 TGRVNHAKELFVSMESMG 255
            G+ + A++L   M   G
Sbjct: 139 EGKTDDAEKLVDEMRKDG 156



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P++  +NV++    K G++D  S L   M+  GV P+ +T+N L+   C +G ++ A+EL
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 248 FVSMESMGC 256
           F  M   GC
Sbjct: 79  FDKMPEKGC 87



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 20/184 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P VS +N +L  L +        S+   +   G+ P++ + SILI  FCK   
Sbjct: 529 MRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACD 588

Query: 87  VSHGFVVLGRILRSCFTPDVV---TFTSLI---KVCKPDAI--------------TYNTI 126
            S    +    L  C   + +   TF  L+   +V K   +               Y  +
Sbjct: 589 FSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDL 648

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ID LCK   +D A  +  K+ DK    +  ++  VI G     + +EA  L  +MM+   
Sbjct: 649 IDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMAS 708

Query: 187 QPNV 190
           +  V
Sbjct: 709 EGKV 712


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 130/239 (54%), Gaps = 21/239 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +  +N +L  LA+    D +  ++  +    + P++YT++ ++N +CK+G V      + 
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVS 242

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            I+ +   PD  T+TSLI                     K C+ + + Y  +I GLC + 
Sbjct: 243 MIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVER 302

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A +LF+KMKD +  P V TYT +I+  C +   +EA  L  EM ++G++PN+ T+ 
Sbjct: 303 RIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYT 362

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           V++D LC   K+++A  LL  M++ G+ P+  TYN L++G+C  G +  A ++   MES
Sbjct: 363 VLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMES 421



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ +++  L  ++     L+L K +   G+ P+++T+++LI+  C   ++     +
Sbjct: 321 PTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKAREL 380

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           LG++L     P+V+T+ +LI   CK                    P+  TYN +I G CK
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK 440

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  V KA  +  KM ++ V P+VVTY S+I G C + +++ A RL   M D+G+ P+  T
Sbjct: 441 RN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWT 499

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK+ +++EA  L D + Q  V P+   Y  L+DG+C  G+VN A  +   M 
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKML 559

Query: 253 SMGC 256
           S  C
Sbjct: 560 SKNC 563



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    ++ ++D+   L   +N  GL PD +T++ +I+  CK  RV     +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDL 519

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              + +    P+VV +T+LI                     K C P+++T+N +I GLC 
Sbjct: 520 FDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCT 579

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  L  KM   +++P V T T +I       D++ A R F +M+  G +P+  T
Sbjct: 580 DGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHT 639

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   +   C+ G++ +A  ++  M ++GV PD FTY++L+ G+   GR N A  +   M 
Sbjct: 640 YTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMH 699

Query: 253 SMGC 256
             GC
Sbjct: 700 DTGC 703



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 20/231 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ +++  L      +    L  ++   GL P++ T++ LIN +CK G +     V
Sbjct: 356 PNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDV 415

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK-------------------PDAITYNTIIDGLCKQ 133
           +  +      P+  T+  LIK  CK                   PD +TYN++IDG C+ 
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  D A  L   M D+ + P+  TYTS+I   C +    EA  LF  +  + V PNVV +
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             ++D  CK GK++EA  +L+ M+     P++ T+N L+ G C  G++  A
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 57/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    +  L + + + S  L P+  T++ LI  +CK   V     V
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGV 449

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L     PDVVT+ SLI   C+                    PD  TY ++ID LCK
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCK 509

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V++A +LF  ++ K+V PNVV YT++I G+C A   NEA  +  +M+ +   PN +T
Sbjct: 510 SKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLT 569

Query: 193 FNVIMDELCKNGKMDEASSL------LDL-----------------------------MI 217
           FN ++  LC +GK+ EA+ L      +DL                             M+
Sbjct: 570 FNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQML 629

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +PDA TY T +  +C  GR+  A+++   M+  G
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG 667



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 33/255 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + + ML  +  P  ++ FN ++  L  +        L +++    L P + T +I
Sbjct: 549 NEAHLMLEKMLSKNCLPNSLT-FNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTI 607

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   K G   H +    ++L S                KPDA TY T I   C++G +
Sbjct: 608 LIHRLLKDGDFDHAYRRFQQMLSSG--------------TKPDAHTYTTFIQTYCREGRL 653

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+++  KMK+  V P++ TY+S+I+G+      N A  +   M D G +P+  TF  +
Sbjct: 654 QDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSL 713

Query: 197 MDELC--KNGKM----------------DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +  L   K GK+                D    LL+ M++HGV P+A +Y  L+ G C  
Sbjct: 714 IKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEI 773

Query: 239 GRVNHAKELFVSMES 253
           G +  A+++F  M+ 
Sbjct: 774 GNLRVAEKVFDHMQQ 788



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 73/134 (54%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YNT+++ L + G VD+ K+++++M +  V PN+ TY  ++ G+C   +  EA +    ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           + G+ P+  T+  ++   C+   +D A  +   M   G R +   Y  L+ G C+  R++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 243 HAKELFVSMESMGC 256
            A +LFV M+   C
Sbjct: 306 EAMDLFVKMKDDDC 319



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 40/265 (15%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P   ++   +    +         +  ++   G+ PDL+T+S LI  +  +GR +  F
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAF 692

Query: 92  VVLGRILRSCFTPDVVTFTSLIK----------------VC------------------- 116
           VVL R+  +   P   TF SLIK                VC                   
Sbjct: 693 VVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV 752

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDW 171
                P+A +Y  ++ G+C+ G +  A+++F  M+ K  + P+ + + +++   C     
Sbjct: 753 EHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKH 812

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           NEA ++  +M+  G  P + +  +++  L K G+ +  +S+   ++Q G   D   +  +
Sbjct: 813 NEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKII 872

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DG    G V    ELF  ME  GC
Sbjct: 873 IDGVGKQGLVEAFYELFNVMEKNGC 897



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 14/143 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD+M +     P    FN +L C  K + ++    +   +   G  P L +  ILI   
Sbjct: 782 VFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G    G  V   +L+  +                D + +  IIDG+ KQG V+   E
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYY--------------DDELAWKIIIDGVGKQGLVEAFYE 887

Query: 142 LFLKMKDKNVKPNVVTYTSVIRG 164
           LF  M+      +  TY+ +I G
Sbjct: 888 LFNVMEKNGCTFSSQTYSLLIEG 910


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F+ ++  L+ +        LF  +   G  PD  T++ LI+ +CK+G +   F +
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFL 307

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGLCK 132
             ++++   TP+VVT+T+L   +CK   +                    TYNTI++GLCK
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A +L  +MK+  + P+ +TYT+++  +    +  +A+ L  EM+D+G+QP VVT
Sbjct: 368 AGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVT 427

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+M+ LC +GK+++   LL  M++ G+ P+A TYN+++  +C+   +  + E++  M 
Sbjct: 428 FNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMC 487

Query: 253 SMG 255
           + G
Sbjct: 488 AQG 490



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++           V+ L K +   GL P+LYT+S +I   CK G+V  G  V
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  +++    PD V +T+LI   CK                    PD+I ++ +I GL  
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A +LF +M  K  +P+ VTYT++I G+C   +  +A  L  +M+  G+ PNVVT
Sbjct: 263 SGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVT 322

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  + D LCK+G++D A+ LL  M + G++ +  TYNT+++G C  G +  A +L   M+
Sbjct: 323 YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMK 382

Query: 253 SMG 255
             G
Sbjct: 383 EAG 385



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 27/260 (10%)

Query: 6   SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           SG G +      EA  +F+ M++    P  V+ +  ++    K         L  ++   
Sbjct: 261 SGSGKVV-----EADKLFNEMIKKGFEPDEVT-YTALIDGYCKLGEMKKAFFLHNQMVQI 314

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           GL P++ T++ L +  CK G +     +L  + R     ++ T+ +++  +CK       
Sbjct: 315 GLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 118 -------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        PD ITY T++D   K G + KA+EL  +M D+ ++P VVT+  ++ G
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            C +    + +RL   M+++G+ PN  T+N IM + C    M  ++ +   M   GV PD
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 225 AFTYNTLLDGFCLTGRVNHA 244
           + TYN L+ G C    +  A
Sbjct: 495 SNTYNILIKGHCKARNMKEA 514



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 16/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLA-KNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA   FD +L  +       S N+ L CL+ K      VL +F      G+  +  +++
Sbjct: 56  NEARKFFDKLLN-YGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYN 114

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL+N   ++G++     +L R+                K C PD ++Y TIIDG C  G 
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRME--------------FKGCIPDVVSYTTIIDGYCHVGE 160

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + K  +L  +M+ K +KPN+ TY+S+I   C +    E +++  EMM +GV P+ V +  
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK G    A  L   M    + PD+  ++ L+ G   +G+V  A +LF  M   G
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +   L K+   DT   L   +   GL  ++ T++ ++N  CK G +     +
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +  +   PD +T+T+L+                     +  +P  +T+N +++GLC 
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCM 437

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++  + L   M +K + PN  TY S+++ +C  N+   +  ++  M  QGV P+  T
Sbjct: 438 SGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNT 497

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK   M EA  L   M++      A +YN L+ GF    ++  A++LF  M 
Sbjct: 498 YNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMR 557

Query: 253 SMG 255
             G
Sbjct: 558 REG 560



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 21/219 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S++N ++  L K  +    + L + +   GL PD  T++ L++ + K G +     +L 
Sbjct: 355 ISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +L     P VVTF  L+                     K   P+A TYN+I+   C + 
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  + E++  M  + V P+  TY  +I+G C A +  EA  L  EM+++       ++N
Sbjct: 475 NMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYN 534

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            ++    K  K+ EA  L + M + G+   A  YN  +D
Sbjct: 535 ALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVD 573



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 21/206 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++    K         L + +   GL P + T ++L+N  C  G++  G  +
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERL 447

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCK 132
           L  +L     P+  T+ S++K                 +C     PD+ TYN +I G CK
Sbjct: 448 LKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCK 507

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L  +M +K       +Y ++I+GF       EA++LF EM  +G+  +   
Sbjct: 508 ARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEI 567

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ 218
           +N+ +D   + G M+    L D  I+
Sbjct: 568 YNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 16/241 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P ++L +F  M +     P   ++  +L  L +    +     +K +   GL P + + +
Sbjct: 102 PFDSLRVFHKM-KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLN 160

Query: 76  ILINCFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +LI   C+  G V  G  +   + +              + C PD+ TY T+I GLC+ G
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPK--------------RGCDPDSYTYGTLISGLCRFG 206

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+AK+LF +M +K+  P VVTYTS+I G C + + +EA R   EM  +G++PNV T++
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +MD LCK+G+  +A  L ++M+  G RP+  TY TL+ G C   ++  A EL   M   
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 255 G 255
           G
Sbjct: 327 G 327



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 15/220 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP V+S N+++  L +N    D  L +F  +   G  PD YT+  LI+  C+ GR+    
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEA- 211

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                  +  FT  V       K C P  +TY ++I+GLC    VD+A     +MK K +
Sbjct: 212 -------KKLFTEMVE------KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGI 258

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +PNV TY+S++ G C      +A  LF  MM +G +PN+VT+  ++  LCK  K+ EA  
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVE 318

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LLD M   G++PDA  Y  ++ GFC   +   A      M
Sbjct: 319 LLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 1/140 (0%)

Query: 118 PDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P   + N +I  LC+  G VD   ++FL+M  +   P+  TY ++I G C     +EAK+
Sbjct: 154 PTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKK 213

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+++   P VVT+  +++ LC +  +DEA   L+ M   G+ P+ FTY++L+DG C
Sbjct: 214 LFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR   A ELF  M + GC
Sbjct: 274 KDGRSLQAMELFEMMMARGC 293



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 56/257 (21%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M+      P V ++  ++  L  +K+ D  +   + + S G+ P+++T+S 
Sbjct: 209 DEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSS 267

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK GR      +   ++               + C+P+ +TY T+I GLCK+  +
Sbjct: 268 LMDGLCKDGRSLQAMELFEMMM--------------ARGCRPNMVTYTTLITGLCKEQKI 313

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV- 195
            +A EL  +M  + +KP+   Y  VI GFC  + + EA     EM+  G+ PN +T+N+ 
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373

Query: 196 ----------------------------------------IMDELCKNGKMDEASSLLDL 215
                                                   ++  LCK G+  +A  L+D 
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433

Query: 216 MIQHGVRPDAFTYNTLL 232
           ++  G  P   T+  L+
Sbjct: 434 IVTDGCIPSKGTWKLLI 450



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 36/154 (23%)

Query: 139 AKELFLK-----------------------------------MKDKNVKPNVVTYTSVIR 163
           A++L ++                                   MKD +  P+   Y +V+ 
Sbjct: 70  AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-GKMDEASSLLDLMIQHGVR 222
                N  N A + +  M + G+ P V + NV++  LC+N G +D    +   M + G  
Sbjct: 130 ILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCD 189

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           PD++TY TL+ G C  GR++ AK+LF  M    C
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+ +    P + +++ ++  L K +  D+V+ L K + + GL P++YT +I 
Sbjct: 206 EAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTIC 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G+++  + +L R+                + C PD +TY  +ID LC    +D
Sbjct: 265 IRVLGRAGKINEAYEILKRMDD--------------EGCGPDVVTYTVLIDALCTARKLD 310

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKE+F KMK    KP+ VTY +++  F    D +  K+ + EM   G  P+VVTF +++
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK G   EA   LD+M   G+ P+  TYNTL+ G     R++ A ELF +MES+G
Sbjct: 371 DALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+++G L +    +    +F ++ STG  PD+ T++ L++ + K G++   F  
Sbjct: 783 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELF-- 840

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
              + +   T +          C+ + IT+N +I GL K G VD A +L+   M D++  
Sbjct: 841 --ELYKEMSTHE----------CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P   TY  +I G   +    EAK+LF  M+D G +PN   +N++++   K G+ D A +L
Sbjct: 889 PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACAL 948

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M++ GVRPD  TY+ L+D  C+ GRV+     F  ++  G
Sbjct: 949 FKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 15/236 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  F+ M +     P + + N  L  LAK         +F  L   GL PD  T+++++
Sbjct: 452 ALETFEKM-KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
            C+ K+G +     +L  ++ +               C+PD I  N++I+ L K   VD+
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENG--------------CEPDVIVVNSLINTLYKADRVDE 556

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++F++MK+  +KP VVTY +++ G        EA  LF  M+ +G  PN +TFN + D
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            LCKN ++  A  +L  M+  G  PD FTYNT++ G    G+V  A   F  M+ +
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D M R     P + ++N ++  L +    D  L LF  + S G+ P  YT+ + 
Sbjct: 381 EAFDTLDVM-RDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK---------------- 117
           I+ + K G          ++      P++V    +  SL K  +                
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGL 499

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD++TYN ++    K G +D+A +L  +M +   +P+V+   S+I     A+  +EA +
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWK 559

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F+ M +  ++P VVT+N ++  L KNGK+ EA  L + M+Q G  P+  T+NTL D  C
Sbjct: 560 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 619

Query: 237 LTGRVNHAKELFVSMESMGC 256
               V  A ++   M  MGC
Sbjct: 620 KNDEVTLALKMLFKMMDMGC 639



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 16/215 (7%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            EA  +F+ ML  +   P  + +NI++    K    D   +LFKR+   G+ PDL T+S+L
Sbjct: 909  EAKQLFEGMLD-YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 967

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            ++C C +GRV  G      +  S   PDVV               YN II+GL K   ++
Sbjct: 968  VDCLCMVGRVDEGLHYFKELKESGLNPDVVC--------------YNLIINGLGKSHRLE 1013

Query: 138  KAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF +MK  + + P++ TY S+I     A    EA +++ E+   G++PNV TFN +
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +GK + A ++   M+  G  P+  TY  L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++AL ++  ++      P   ++  ++  L+K+        LF+ +   G  P+   ++I
Sbjct: 872  DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNI 931

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            LIN F K G       +  R+++              +  +PD  TY+ ++D LC  G V
Sbjct: 932  LINGFGKAGEADAACALFKRMVK--------------EGVRPDLKTYSVLVDCLCMVGRV 977

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNVVTFNV 195
            D+    F ++K+  + P+VV Y  +I G   ++   EA  LF EM   +G+ P++ T+N 
Sbjct: 978  DEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNS 1037

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  L   G ++EA  + + + + G+ P+ FT+N L+ G+ L+G+  HA  ++ +M + G
Sbjct: 1038 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I +  L +    +    + KR++  G  PD+ T+++LI+  C   ++     V
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             ++      PD VT+ +L+                         PD +T+  ++D LCK
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A +    M+D+ + PN+ TY ++I G    +  ++A  LF  M   GV+P   T
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V +D   K+G    A    + M   G+ P+    N  L      GR   AK++F  ++
Sbjct: 436 YIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK 495

Query: 253 SMG 255
            +G
Sbjct: 496 DIG 498



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 19/219 (8%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL---INCFCKMGRVSHGFVVLGRIL 98
           ++G +      D  +S  +RL + G+  D    SIL   I   CK   VS       R L
Sbjct: 719 LIGSILAEAGIDNAVSFSERLVANGICRD--GDSILVPIIRYSCKHNNVSGA-----RTL 771

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
              FT D+          +P   TYN +I GL +   ++ A+++FL++K     P+V TY
Sbjct: 772 FEKFTKDLGV--------QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATY 823

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMI 217
             ++  +  +   +E   L+ EM     + N +T N+++  L K G +D+A  L  DLM 
Sbjct: 824 NFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                P A TY  L+DG   +GR+  AK+LF  M   GC
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
            +++   G   + Y+++ LI+   K    +    V  R++   F P + T++SL+     
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMV---- 231

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
                     GL K+  +D    L  +M+   +KPNV T+T  IR    A   NEA  + 
Sbjct: 232 ----------GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M D+G  P+VVT+ V++D LC   K+D A  + + M     +PD  TY TLLD F   
Sbjct: 282 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341

Query: 239 GRVNHAKELFVSMESMG 255
             ++  K+ +  ME  G
Sbjct: 342 RDLDSVKQFWSEMEKDG 358



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 59/295 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M++    PP   +FN +  CL KN      L +  ++   G  PD++T++ 
Sbjct: 590 QEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648

Query: 77  LINCFCKMGRVSHG--------------FVVL---------------------------- 94
           +I    K G+V                 FV L                            
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708

Query: 95  ------------GRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKA 139
                       G IL      + V+F+  +    +C+        II   CK   V  A
Sbjct: 709 DQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGA 768

Query: 140 KELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           + LF K  KD  V+P + TY  +I G   A+    A+ +F+++   G  P+V T+N ++D
Sbjct: 769 RTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLD 828

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              K+GK+DE   L   M  H    +  T+N ++ G    G V+ A +L+  + S
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           ++ K D  TY TI   L  +G + +A     KM++     N  +Y  +I     +    E
Sbjct: 147 RIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 206

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M+ +G +P++ T++ +M  L K   +D    LL  M   G++P+ +T+   + 
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR 266

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                G++N A E+   M+  GC
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGC 289



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 61/134 (45%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T N +++ L   G +++   +F  M+ + +K +  TY ++ +         +A     +M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            + G   N  ++N ++  L K+    EA  +   MI  G RP   TY++L+ G      +
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239

Query: 242 NHAKELFVSMESMG 255
           +    L   ME++G
Sbjct: 240 DSVMGLLKEMETLG 253


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F I+L  L ++   +    L  R+   G  PD   ++ LI+ + K       F  
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++++   P VVT+T+++                     K C P+  TYN I++GLC+
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +D+AK++  +M  +   P+VVTY S I+G C  +  +EA++    M    V P+VV+
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVS 184

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK+G +D AS +LD M   G  PD  TY++L+DGFC  G V  A  L  SM 
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 253 SMGC 256
            +GC
Sbjct: 245 KLGC 248



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 19/249 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++ H  P  V+  NI+ G     +  D V  L   +   G  P++YT+++++   C+  
Sbjct: 71  MVKNHCLPTVVTYTNIVDGLCKAGRTKDAV-KLLDEMRDKGCSPNIYTYNVIVEGLCEER 129

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------PDAITYNTII 127
           ++     +L  +    + PDVVT+ S IK +CK                 PD ++Y T+I
Sbjct: 130 KLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVI 189

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +GLCK G +D A  +  +M ++   P+VVTY+S+I GFC   +   A  L   M+  G +
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 249

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+V +N ++  L + G + +A  +L  M + G  PD  +YN  +DG C   RV  AK +
Sbjct: 250 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 309

Query: 248 FVSMESMGC 256
           F  M   GC
Sbjct: 310 FDRMVERGC 318



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 15/224 (6%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           ++ RM P  P V S+  ++  L K+   D+   +  ++ + G  PD+ T+S LI+ FCK 
Sbjct: 172 FLARM-PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G V     +L  +L+                C+P+ + YN+++  L + G + KA+++ +
Sbjct: 231 GEVERAMGLLDSMLKLG--------------CRPNMVAYNSLLGALHRLGHIGKAEDMLV 276

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +M+ +   P+VV+Y + I G C A    +AK +F  M+++G  PN  +++++++ELCK  
Sbjct: 277 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKK 336

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++D+A +L++   +     D   Y  LLDG C  GR + A  LF
Sbjct: 337 ELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALF 380



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 25/249 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ + D M R     P + ++N+++  L + +  D    + + +   G FPD+ T++ 
Sbjct: 97  KDAVKLLDEM-RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 155

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I   CK  RV      L R+     TPDVV++T++I                     + 
Sbjct: 156 FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG 212

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY+++IDG CK G V++A  L   M     +PN+V Y S++          +A+
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 272

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            + +EM  +G  P+VV++N  +D LCK  ++ +A ++ D M++ G  P+A +Y+ L++  
Sbjct: 273 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEEL 332

Query: 236 CLTGRVNHA 244
           C    ++ A
Sbjct: 333 CKKKELDDA 341



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 130/262 (49%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A+ + D ML++   P  V+ +N +LG L +  H      +   +   G  PD+ +++ 
Sbjct: 234 ERAMGLLDSMLKLGCRPNMVA-YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----DAIT--------- 122
            I+  CK  RV     V  R++    TP+  +++ L++ +CK     DAIT         
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKY 352

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEA 174
                  Y  ++DGLCK G  D+A  LF K+ D+ + +P+V  Y  ++   C     ++A
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA 412

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++  +M+++    NVVT+N+++  LC + ++ +A ++L  M+  G  PD  TY TL+D 
Sbjct: 413 LQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 471

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G+   A ELF      GC
Sbjct: 472 MCKCGKSAAALELFEEAVKGGC 493



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 15/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +FD M+      P  SS+++++  L K K  D  ++L ++        D+  +++
Sbjct: 304 KKAKAVFDRMVE-RGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTV 362

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK GR      +  ++L               K+C+PD   YN ++D  CK+  +
Sbjct: 363 LLDGLCKGGRFDEACALFSKVLDE-------------KICEPDVFFYNVMLDSHCKRRQI 409

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA ++  +M ++N   NVVT+  ++ G C  +  ++A+ + + M+D+G  P+ VT+  +
Sbjct: 410 DKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTL 468

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +D +CK GK   A  L +  ++ G  PD  TY+ L+ G         A  LF  ++
Sbjct: 469 VDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLD 524



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 82/142 (57%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K C+PDA T+  ++ GLC+   ++KA++L  +MK+    P+   Y ++I G+  A D+ +
Sbjct: 4   KSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQ 63

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A +   EM+     P VVT+  I+D LCK G+  +A  LLD M   G  P+ +TYN +++
Sbjct: 64  AFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVE 123

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G C   +++ AK++   M   G
Sbjct: 124 GLCEERKLDEAKKMLEEMAVRG 145



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 30/259 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  +L      P V  +N+ML    K +  D  L + K++       ++ T +I
Sbjct: 374 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNI 432

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L++  C   R+S    +L  ++   F PD VT+ +L+                       
Sbjct: 433 LVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGG 492

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY+ +I GL  +   ++A  LF K+       +V  + ++I G+      +   
Sbjct: 493 CVPDVVTYSALITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGL 545

Query: 176 RLFIEMMDQGVQPNVVTFN-VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +LF+E+++  V+PN  TF   I  +L K   + +A  L D  ++ G  PD F  NTL+D 
Sbjct: 546 KLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDV 605

Query: 235 FCLTGRVNHAKELFVSMES 253
           F   G +  A+ +F SM+ 
Sbjct: 606 FAKCGDLEEARRIFYSMKQ 624



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M DK+ +P+  T+  ++RG C +N   +A++L   M + G  P+   +N ++    K   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +A   L  M+++   P   TY  ++DG C  GR   A +L   M   GC
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGC 111


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FN ++  L      +  L L + L   GL P++YT +ILIN  CK+G       +
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  S  TPD VT+  LI                       C    +TYNTIIDGLCK
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A+E+F +M    +  N +T+ ++I G C A   ++A  L  +M+ +G+QPN VT
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVT 548

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   CK G + +A+ +L  M  +G   D  TY TL++G C   R   A +L   M 
Sbjct: 549 YNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMR 608

Query: 253 SMG 255
             G
Sbjct: 609 MKG 611



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    +    +  L L  R++  G  P   T ++LIN +CK+GRV      
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGY 288

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           + + +   F PD VTF++ +                     + C+PD  TY+T+I+ LC 
Sbjct: 289 IQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCN 348

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++AK +  +M D    P+  T+ ++I   C  N   EA  L  E+  +G+ PNV T
Sbjct: 349 NGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYT 408

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++ LCK G    A  L + M   G  PD  TYN L+D  C +G++  A +L   ME
Sbjct: 409 FNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEME 468

Query: 253 SMGC 256
             GC
Sbjct: 469 VSGC 472



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG +   +   AL +   M  M  SP  V+  N+++    K       L   ++  + G 
Sbjct: 239 EGFVEEGSIEAALRLKARMSEMGCSPTSVT-VNVLINGYCKLGRVGDALGYIQQEIADGF 297

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------ 115
            PD  T S  +N  C+ G V H   VLG +L+    PDV T++++I              
Sbjct: 298 EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKG 357

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                    C PD  T+NT+I  LC +  +++A +L  ++  K + PNV T+  +I   C
Sbjct: 358 IVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALC 417

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A RLF EM   G  P+ VT+N+++D LC +GK+ +A  LL  M   G      
Sbjct: 418 KVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTV 477

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYNT++DG C   R+  A+E+F  M+  G
Sbjct: 478 TYNTIIDGLCKRRRIEEAEEVFDQMDVTG 506



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L K       + LF+ + S+G  PD  T++ILI+  C  G+++    +
Sbjct: 404 PNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDL 463

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +  S      VT+ ++I  +CK                     +AIT+NT+IDGLC 
Sbjct: 464 LKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCN 523

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A EL  +M  + ++PN VTY S++  +C   + ++A  +   M   G + +VVT
Sbjct: 524 AERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVT 583

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LCK  +   A  LL  M   G++P    YN ++           A  LF  M 
Sbjct: 584 YATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMT 643

Query: 253 SMG 255
            +G
Sbjct: 644 EVG 646



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 16/219 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  LA+      + S +  ++S G+ PD+ T + +I+  C+  R +   V++   +
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCR-ARQARTAVLMLEEM 222

Query: 99  RSC-FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            SC   PD  TFT              T+++G  ++G ++ A  L  +M +    P  VT
Sbjct: 223 SSCDVAPDETTFT--------------TLMEGFVEEGSIEAALRLKARMSEMGCSPTSVT 268

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
              +I G+C      +A     + +  G +P+ VTF+  ++ LC+NG +D A  +L LM+
Sbjct: 269 VNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLML 328

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           Q G  PD +TY+T+++  C  G +  AK +   M   GC
Sbjct: 329 QEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGC 367



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 22/205 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN ++  L   +  D    L  ++ S GL P+  T++ ++  +CK G +S    +L  +
Sbjct: 513 TFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTM 572

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             + F  DVVT+ +LI                     K  KP    YN +I  L +    
Sbjct: 573 TANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNG 632

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAKRLFIEMMDQGVQPNVVTFNV 195
             A  LF +M +    P+  TY  V RG C       EA    +EM D G  P   +F +
Sbjct: 633 RDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRM 692

Query: 196 IMDELCKNGKMDEASSLLDLMIQHG 220
           + + L   G  D     ++L+++  
Sbjct: 693 LAEGLLNLGMDDYLIRAIELIVEKA 717



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V+ N   Y  ++      +     +  + EM  QG++P+VVTFN ++D LC+  +   A 
Sbjct: 157 VQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAV 216

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +L+ M    V PD  T+ TL++GF   G +  A  L   M  MGC
Sbjct: 217 LMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGC 262



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P    Y  II  L   G  D  K L  +M+ +  +  +    S I  +     +++A  L
Sbjct: 88  PSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDL 147

Query: 178 FIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               +D  GVQ N   +N ++  L +  K+    S    M   G+ PD  T+NT++D  C
Sbjct: 148 VSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALC 207

Query: 237 LTGRVNHAKELFVSMESM 254
              R   A+   + +E M
Sbjct: 208 ---RARQARTAVLMLEEM 222


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R   + P   S N +L  L+K+ +   V   F  +   G+ P ++T++++I+  CK G 
Sbjct: 245 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 304

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI----KV-----------------CKPDAITYNT 125
           + +   +  ++     +PDVVT+ SLI    KV                 C PD ITYN 
Sbjct: 305 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 364

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+  CK   + +A E F +MK+  +KPNVVTY+++I  FC       A +LF++M   G
Sbjct: 365 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTG 424

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + PN  T+  ++D  CK G + EA  LL+ M+Q GV+ +  TY  LLDG C  GR+  A+
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 246 ELFVSM 251
           E+F SM
Sbjct: 485 EVFRSM 490



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 113/218 (51%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    + V SLF  +   G  PD+ T++ LINC+CK  ++   F  
Sbjct: 322 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +  +   P+VVT              Y+T+ID  CK+G +  A +LF+ M+   + P
Sbjct: 382 FSEMKNNGLKPNVVT--------------YSTLIDAFCKEGMMQGAIKLFVDMRRTGLLP 427

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TYTS+I   C A +  EA +L  +M+  GV+ N+VT+  ++D LCK G+M EA  + 
Sbjct: 428 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVF 487

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             M++ G+ P+   Y  L+ G+    R+  A ++   M
Sbjct: 488 RSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 525



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 82/138 (59%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   TYN +ID LCK+G ++ ++ LF++M++  + P+VVTY S+I G+       E   L
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM D G  P+++T+N +++  CK  KM  A      M  +G++P+  TY+TL+D FC 
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A +LFV M   G
Sbjct: 407 EGMMQGAIKLFVDMRRTG 424



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++ C  K +        F  + + GL P++ T+S LI+ FCK G +     +
Sbjct: 357 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 416

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
              + R+   P+  T+TSLI   CK                     + +TY  ++DGLCK
Sbjct: 417 FVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 476

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+E+F  M    + PN   YT+++ G+  A    +A ++  +M +  ++P+++ 
Sbjct: 477 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 536

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I+   C   K++E   +L+ M   G+  +     T++D +   G+ + A   F  M+
Sbjct: 537 YGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQ 596

Query: 253 SMG 255
            +G
Sbjct: 597 DVG 599



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 23/256 (8%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F+Y   M  +   P V +++ ++    K       + LF  +  TGL P+ +T++ LI+ 
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PD 119
            CK G ++  + +L  +L++    ++VT+T+L+  +CK                    P+
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
              Y  ++ G  K   ++ A ++  +M + N+KP+++ Y S+I G C      E K +  
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 558

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM  +G+  N V    I+D   K GK  +A +    M   GV     TY  L+DG C  G
Sbjct: 559 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 240 RVNHAKELFVSMESMG 255
            V  A + F  M S+G
Sbjct: 619 IVELAVDYFCRMLSLG 634



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  ML+   SP     +  ++    K +  +  + + K++    + PDL  +  +
Sbjct: 482 EAEEVFRSMLKDGISPNQ-QVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 540

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I   C   ++    ++L  +     + + V  T++I                        
Sbjct: 541 IWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV 600

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +   +TY  +IDGLCK G V+ A + F +M    ++PNV  YTS+I G C  N    AK+
Sbjct: 601 EATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKK 660

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM  +G+ P++  F  ++D   K+G + EA  L+  M +  +  D   Y +L+ GF 
Sbjct: 661 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFS 720

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++ A++ F  M   G
Sbjct: 721 QCGELHQARKFFNEMIEKG 739



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 22/231 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   I + M     S  PV S  I+       K  D  L+ F+ +   G+   + T+ +L
Sbjct: 552 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA-LNFFQEMQDVGVEATIVTYCVL 610

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK G V        R+L     P+V  +TSLI  +CK                   
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   +  +IDG  K G + +A  L  +M +  ++ ++  YTS++ GF    + ++A++
Sbjct: 671 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 730

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            F EM+++G+ P  V    ++ E  K G++DEA  L + M + G+  ++ T
Sbjct: 731 FFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +C   +  ++ +     + G +++A E F +M++    P   +   ++     + +    
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 273

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++ F +M+  G+ P+V T+NV++D LCK G ++ +  L   M + G+ PD  TYN+L+DG
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +   G +     LF  M+ +GC
Sbjct: 334 YGKVGSLEEVASLFNEMKDVGC 355


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 132/262 (50%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F   L M  SPP   +FNI++  L +    D    +FK + S G  PD+ T++ 
Sbjct: 160 HEAIYLFKEYLVMQ-SPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNT 218

Query: 77  LINCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLIK-VCK----------------- 117
           LIN  CK   V  G  +   I  RS  +PD+VT+TS+I   CK                 
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRS 278

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ IT+N +IDG  K G + +A+ ++ KM   +   +VVT+TS+I G+C A   N  
Sbjct: 279 GIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHG 338

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            + +  M  + V P V T+ V+++ LCK  +++EA   L  +    + P  F YN ++DG
Sbjct: 339 LKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDG 398

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G V+    +   ME   C
Sbjct: 399 FCKAGNVDEGNVILKEMEEKRC 420



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 124/254 (48%), Gaps = 23/254 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FDYM       P       ++  +A+   +D V  L   +    +  + + ++ L++  
Sbjct: 95  VFDYM-GSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVL 153

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VCKPDA 120
            K  +V     +    L     PD  TF  LI+                      C PD 
Sbjct: 154 VKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDV 213

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +TYNT+I+GLCK   V +  ELF +++ + +  P++VTYTS+I GFC +    EA  LF 
Sbjct: 214 VTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFE 273

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EMM  G+QPNV+TFNV++D   K G + EA ++   M       D  T+ +L+DG+C  G
Sbjct: 274 EMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAG 333

Query: 240 RVNHAKELFVSMES 253
           +VNH  + +  M++
Sbjct: 334 QVNHGLKFWNVMKT 347



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++    K+       +LF+ +  +G+ P++ T ++LI+ F K+G ++    +
Sbjct: 247 PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAM 306

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++     + DVVTFTSLI                     +   P   TY  +I+ LCK
Sbjct: 307 YRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCK 366

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A++   ++K+ ++ P    Y  VI GFC A + +E   +  EM ++   P+ VT
Sbjct: 367 ENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVT 426

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           F +++   C  G+M EA ++ + M+     PD  T N+L+      G  N A  +
Sbjct: 427 FTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 50/256 (19%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S++N+++  L +  H+D V  +F  + S G  PD      L+    +    +  F ++ +
Sbjct: 74  STYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQ----ASDFDMVKK 129

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +L      +V          + ++  YN ++  L KQ  V +A  LF +       P+  
Sbjct: 130 LLAEVQGKEV----------RINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTW 179

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL---------------- 200
           T+  +IRG C     + A  +F +M   G  P+VVT+N +++ L                
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEI 239

Query: 201 --------------------CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
                               CK+GKM EAS+L + M++ G++P+  T+N L+DGF   G 
Sbjct: 240 QSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGN 299

Query: 241 VNHAKELFVSMESMGC 256
           +  A+ ++  M    C
Sbjct: 300 IAEAEAMYRKMAYFDC 315



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 22/222 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M+R     P V +FN+++    K  +     ++++++       D+ T + L
Sbjct: 267 EASNLFEEMMR-SGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSL 325

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C+ G+V+HG      +     +P V T+  LI  +CK                   
Sbjct: 326 IDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSI 385

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P    YN +IDG CK G VD+   +  +M++K   P+ VT+T +I G C      EA  
Sbjct: 386 IPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAIN 445

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           +F  M+     P+ +T N ++  L K G  +EA  +  + ++
Sbjct: 446 IFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALE 487


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 15/230 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M     +P  V+ + I++    +    D     F ++   G+   +Y+++ +
Sbjct: 383 EAELLFSVMAERGLNPNDVT-YTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSM 441

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INC CK G++    ++   ++     P V T+TSLI               G CK G V 
Sbjct: 442 INCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLI--------------SGYCKDGLVP 487

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +L+ +M  K + PN VT+T++I G C  N   EA +LF EM++  + PN VT+NV++
Sbjct: 488 KAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLI 547

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +  C+ G    A  LLD MI+ G+ PD +TY  L+ G C TGRV+ AKE 
Sbjct: 548 EGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEF 597



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+ +   P   +   ++ G L K    +    L  ++   G+ P+L+ ++ +IN  
Sbjct: 317 MMDEMIELGYVPSEAAVSGLIEG-LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSL 375

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAI---------------- 121
           CK G++    ++   +      P+ VT+T LI    +  K D                  
Sbjct: 376 CKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATV 435

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            +YN++I+  CK G +  A+ LF +M DK +KP V TYTS+I G+C      +A +L+ E
Sbjct: 436 YSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHE 495

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G+ PN VTF  ++  LC+  KM EAS L D M++  + P+  TYN L++G C  G 
Sbjct: 496 MTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGN 555

Query: 241 VNHAKELFVSMESMG 255
              A EL   M   G
Sbjct: 556 TTRAFELLDEMIKKG 570



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ++R +   P V + + +L  LA+ + +  VL LF  L + G+ PD Y +++++ C C++ 
Sbjct: 180 LMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELK 239

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
             +    ++ +   +               C    +TYN  I+GLCK   V +A E+   
Sbjct: 240 DFNKAKEIINQAEGNG--------------CSLSIVTYNVFINGLCKSKRVWEAVEVKRS 285

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           + +K +K ++VTY +++ G C   ++     +  EM++ G  P+    + +++ L K G 
Sbjct: 286 LGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGS 345

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ A  LL+ + + GV P+ F YN++++  C TG++  A+ LF  M   G
Sbjct: 346 IEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERG 395



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 22/222 (9%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV 106
           A N++   +  L + ++  G+ PD   ++ILI+ F K G +   F     ++   + P+ 
Sbjct: 655 ALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNS 714

Query: 107 VTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           VT+T+L+                         P+ ITY   +D L K+G ++ A +L   
Sbjct: 715 VTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNA 774

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M   +   N VTY  +IRG+C    + EA +L   M+  G+ P+ +T++  + E CK G 
Sbjct: 775 MLQGSF-ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGN 833

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +D A  + + M+Q G++PD   +N L+   CL G ++ A +L
Sbjct: 834 VDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQL 875



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N M+ C  K         LFK +   GL P + T++ LI+ +CK G V   F +  
Sbjct: 435 VYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYH 494

Query: 96  RILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQG 134
            +      P+ VTFT+LI  +C+                    P+ +TYN +I+G C++G
Sbjct: 495 EMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREG 554

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +A EL  +M  K + P+  TY  +I G C     +EAK    ++  +  + + + + 
Sbjct: 555 NTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYT 614

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++   CK G++ EA      M+  G++ D  +Y  L+ G
Sbjct: 615 ALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG 654



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 16/234 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+ +   P  V+ +N+++    +  +      L   +   GL PD YT+  L
Sbjct: 523 EASKLFDEMVELKILPNEVT-YNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPL 581

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   C  GRVS             F  D+       K  + D + Y  ++ G CK+G + 
Sbjct: 582 IAGLCSTGRVSEA---------KEFINDLHH-----KHQRLDELCYTALLQGFCKEGRIK 627

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A     +M  + ++ ++V+Y  +I G    ND      L  EM  +G+QP+ V + +++
Sbjct: 628 EALVARQEMVGRGLQMDLVSYAVLISGALNQND-RILFELLREMHGKGMQPDNVIYTILI 686

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           D   K+G + +A     +MI  G  P++ TY  L++G    G VN AK LF  M
Sbjct: 687 DGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRM 740



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 112/246 (45%), Gaps = 22/246 (8%)

Query: 22  IFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           +F+ +  MH     P    + I++    K+ +       +  +   G  P+  T++ L+N
Sbjct: 663 LFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVN 722

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCKPD 119
              K G V+   ++  R+L     P+ +T+                     ++++    +
Sbjct: 723 GLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFAN 782

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +TYN +I G C+ G   +A +L   M    + P+ +TY++ I  +C   + + A  ++ 
Sbjct: 783 TVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWE 842

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+ +G++P+ V FN ++   C NG++D A  L + M+  G++P   TY++L+       
Sbjct: 843 CMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRA 902

Query: 240 RVNHAK 245
           R+   +
Sbjct: 903 RLTQVQ 908



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  ML     P  ++ +   L  L K  + +  L L   +   G F +  T++I
Sbjct: 731 NEAKLLFKRMLVGEAIPNHIT-YGCFLDHLTKEGNMENALQLHNAM-LQGSFANTVTYNI 788

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  +C++G+      +L          DV+    ++    PD ITY+T I   CK+G V
Sbjct: 789 LIRGYCQIGKFQEAAKLL----------DVMIGIGMV----PDCITYSTFIYEYCKRGNV 834

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A +++  M  + +KP+ V +  +I   C   + + A +L  +MM +G++P   T++ +
Sbjct: 835 DAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSL 894

Query: 197 MDELCKNGKMDEAS 210
           M +L +  ++ +  
Sbjct: 895 MVQLAQRARLTQVQ 908



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M D G+ P V T + +++ L +  K  +   L D ++  GV+PD + Y  ++   C    
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 241 VNHAKELFVSMESMGC 256
            N AKE+    E  GC
Sbjct: 241 FNKAKEIINQAEGNGC 256


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF+ M++  P P   +++  +L   A   +   + ++   +   G+  + +T SI 
Sbjct: 244 EAREIFNSMIQSGPKPD-ATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIE 302

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +CK GR+    +   ++ +  F PD+VT+T              T+IDGLCK G +D
Sbjct: 303 IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYT--------------TVIDGLCKIGRLD 348

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D  + PN++T+T++I GF     W +A+ LF EMMD+G+ P+V  F  ++
Sbjct: 349 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMI 408

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D L K GK+ EA  L DLM + G +P+  +YNT++ G+ + G V    +L   M  +G
Sbjct: 409 DRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 466



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 24/219 (10%)

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
           R  +  + PD+ T  ILI+C C  G ++ GF  LG+I+++    D V FT L++      
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKK 62

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--KNVKPNVV 156
                            C PD  +Y+T++ GLC +   ++A EL   M +   N  P+VV
Sbjct: 63  RTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVV 122

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           +Y++VI GF    D  +A  LF +M+D G+ PNVVT N ++D LCK   MD+A ++L  M
Sbjct: 123 SYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 182

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I   + P+  TYN+L+ G+  +G+   A  +   M   G
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDG 221



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 28/231 (12%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR---SCFT 103
           AK +  D +  + +R+   G  PD++++S L+   C   +      ++  +     +C  
Sbjct: 60  AKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNC-P 118

Query: 104 PDVVTFTSLIK--------------VCK-------PDAITYNTIIDGLCKQGFVDKAKEL 142
           PDVV+++++I                CK       P+ +T N++IDGLCK   +DKA+ +
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +M D+++ PN  TY S+I G+  +  W EA R+  EM   G +PNVVT+N+++D LCK
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVS 250
           +G   EA  + + MIQ G +PDA TY +LL G+   G    +N+ K+L V 
Sbjct: 239 SGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQ 289



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 56/279 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S++ ++    K        +LF ++   G+ P++ T + +I+  CK+  +     
Sbjct: 118 PPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 177

Query: 93  VLGRILRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLC 131
           VL +++     P+  T+ SLI             ++ K        P+ +TYN +ID LC
Sbjct: 178 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLC 237

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG--------------------------- 164
           K GF  +A+E+F  M     KP+  TY S++ G                           
Sbjct: 238 KSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHH 297

Query: 165 --------FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                   +C     +EA   FI+M   G  P++VT+  ++D LCK G++D+A S    M
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I  G+ P+  T+ TL+ GF + G+   A+ELF  M   G
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG 396



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 26/256 (10%)

Query: 26  MLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINC 80
           +LR  P     P V S++ +L  L   K  +    L   +   G    PD+ ++S +I+ 
Sbjct: 71  VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG 130

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PD 119
           F K G V   + +  ++L     P+VVT  S+I  +CK                    P+
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 190

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TYN++I G    G   +A  +  +M     +PNVVTY  +I   C +    EA+ +F 
Sbjct: 191 CTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFN 250

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+  G +P+  T+  ++      G + E +++ DLM+Q+G+R +  T++  +  +C  G
Sbjct: 251 SMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCG 310

Query: 240 RVNHAKELFVSMESMG 255
           R++ A   F+ M+ +G
Sbjct: 311 RLDEASLTFIKMQQLG 326



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 40/235 (17%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F+I +    K    D     F ++   G  PD+ T++ +I+  CK+GR+        ++
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           +    +P+++TFT+LI                     +   PD   +  +ID L K+G V
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKV 417

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A++LF  M     KPNVV+Y ++I G+  A +  E  +L  +M+  G++P  VTFN +
Sbjct: 418 TEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL 477

Query: 197 MDEL-------------------CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +D +                   C++G++++  +L   M+    + D  T N  L
Sbjct: 478 LDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKL 532


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 16/241 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P ++L +F + ++     P   ++  +L  L +    +     +K +   GL P + + +
Sbjct: 102 PFDSLRVF-HKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLN 160

Query: 76  ILINCFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +LI   C+  G V  G  +   + +              + C PD+ TY T+I GLC+ G
Sbjct: 161 VLIKALCRNDGTVDAGLKIFHEMPK--------------RGCDPDSYTYGTLISGLCRFG 206

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+AK+LF +M +K+  P VVTYTS+I G C + + +EA R   EM  +G++PNV T++
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYS 266

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +MD LCK+G+  +A  L ++M+  G RP+  TY TL+ G C   ++  A EL   M   
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 255 G 255
           G
Sbjct: 327 G 327



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 17/221 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP V+S N+++  L +N    D  L +F  +   G  PD YT+  LI+  C+ GR+    
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK 212

Query: 92  VVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
            +               FT ++ K C P  +TY ++I+GLC    VD+A     +MK K 
Sbjct: 213 KL---------------FTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKG 257

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           ++PNV TY+S++ G C      +A  LF  MM +G +PN+VT+  ++  LCK  K+ EA 
Sbjct: 258 IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAV 317

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            LLD M   G++PDA  Y  ++ GFC   +   A      M
Sbjct: 318 ELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEM 358



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 1/140 (0%)

Query: 118 PDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P   + N +I  LC+  G VD   ++F +M  +   P+  TY ++I G C     +EAK+
Sbjct: 154 PTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKK 213

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM+++   P VVT+  +++ LC +  +DEA   ++ M   G+ P+ FTY++L+DG C
Sbjct: 214 LFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLC 273

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR   A ELF  M + GC
Sbjct: 274 KDGRSLQAMELFEMMMARGC 293



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 9/196 (4%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ M+     P  V+   ++ G L K +     + L  R+N  GL PD   +  +
Sbjct: 280 QAMELFEMMMARGCRPNMVTYTTLITG-LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKV 338

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC + +       L  ++    TP+ +T+   +K       T N ++ GLC   +  
Sbjct: 339 ISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVK-------TSNEVVRGLCTN-YPS 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  L+L M+ + +   V T  S+++  C   ++ +A +L  E++  G  PN  T+ +++
Sbjct: 391 RAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLI 450

Query: 198 DELCKNGKMDEASSLL 213
                N  + EAS  L
Sbjct: 451 GHTLDNTIVGEASDSL 466



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 36/174 (20%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  ++  ++  L        A+++  +MK +N   +     S+ RG+   +   ++ R+F
Sbjct: 50  DQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVF 109

Query: 179 IEMMD-----------------------------------QGVQPNVVTFNVIMDELCKN 203
            +M D                                    G+ P V + NV++  LC+N
Sbjct: 110 HKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRN 169

Query: 204 -GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            G +D    +   M + G  PD++TY TL+ G C  GR++ AK+LF  M    C
Sbjct: 170 DGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+      P + +F+ ++    K ++  TV+ L + + S GL P++YT++I 
Sbjct: 212 EALEVYRRMVS-EGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTIC 270

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G++   + ++ R+                  C PD +TY  +ID LC    +D
Sbjct: 271 IRVLGRDGKIDEAYRIMKRMDDDG--------------CGPDVVTYTVLIDALCTARKLD 316

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  LF KMK  + KP+ VTY +++  F      ++ ++++ EM   G  P+VVTF +++
Sbjct: 317 DAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILV 376

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G+++EA  LLD M + GV P+  TYNTL+ G     R++ A +LF +MES+G
Sbjct: 377 NALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLG 434



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL  F+ M +     P + + N  L  LA+        ++F  L S+GL PD  T++
Sbjct: 455 PGKALETFEKM-KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++ C+ K+G+V     +L  + +                C+PD I  N++ID L K G 
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKV--------------QCEPDVIVINSLIDTLYKAGR 559

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V++A ++F +M++ N+ P VVTY  ++ G        +A +LF  M   G  PN +TFN 
Sbjct: 560 VEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNT 619

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++D LCKN ++D A  +   M     RPD  T+NT++ GF    ++ +A  LF  M+ +
Sbjct: 620 LLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL 678



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M R     P + ++N ++  L +    D  L LF  + S G+ P  YT+ +
Sbjct: 386 NEAFDLLDTM-RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYIL 444

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK--------------- 117
           LI+   K G          ++      P++V    +  SL ++ +               
Sbjct: 445 LIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD++TYN ++    K G VD+A +L  +M     +P+V+   S+I     A    EA 
Sbjct: 505 LAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAW 564

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M +  + P VVT+N+++  L K G++ +A  L + M  HG  P+  T+NTLLD  
Sbjct: 565 QMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCL 624

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C    V+ A ++F  M +M C
Sbjct: 625 CKNDEVDLALKMFYKMTTMNC 645



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N+++    +  + +   +LF+ + S G  PD +T++ LI+   K G+++  F +
Sbjct: 788 PTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDL 847

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L               + CKP+ ITYN +I  L K   +DKA +L+  +   +  P
Sbjct: 848 YDEML--------------TRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSP 893

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              T+  +I G   +   ++A  +F  M+  G +PN   +N++++   K G +D A    
Sbjct: 894 TPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFF 953

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M++ G+RPD  +Y  L+D  C+ GRV+ A   F  ++  G
Sbjct: 954 KRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I +  L ++   D    + KR++  G  PD+ T+++LI+  C   ++     +
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCL 321

Query: 94  LGRILRSCFTPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCK 132
             ++  S   PD VT+ +L+          KV K           PD +T+  +++ LCK
Sbjct: 322 FTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A +L   M+ + V PN+ TY ++I G   AN  ++A  LF  M   GV+P   T
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D   K+G   +A    + M   G+ P+    N  L      GR+  AK +F  ++
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELK 501

Query: 253 SMG 255
           S G
Sbjct: 502 SSG 504



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 120/240 (50%), Gaps = 17/240 (7%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            NE   ++D ML     P  ++ +N+++  L K+   D  + L+  L S    P   T   
Sbjct: 842  NELFDLYDEMLTRGCKPNTIT-YNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP 900

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGF 135
            LI+   K GR+     +               F  ++   C+P++  YN +++G  K G 
Sbjct: 901  LIDGLLKSGRLDDAHEM---------------FDGMVHYGCRPNSAIYNILVNGYGKLGH 945

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            VD A E F +M  + ++P++ +YT ++   C A   ++A   F ++   G+ P++V +N+
Sbjct: 946  VDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL 1005

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +++ L ++ + +EA SL   M   G+ PD +TYN+L+    + G +  A +++  ++ +G
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG 1065



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 15/215 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++  L K+K      ++F +     G+ P L  +++LI+ F ++  V   + +   +  +
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                          C PD  TYN++ID   K G +++  +L+ +M  +  KPN +TY  
Sbjct: 820 G--------------CAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNM 865

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           VI     +N  ++A  L+  ++     P   TF  ++D L K+G++D+A  + D M+ +G
Sbjct: 866 VISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYG 925

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            RP++  YN L++G+   G V+ A E F  M   G
Sbjct: 926 CRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG 960



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 15/215 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++A  +FD M+  +   P  + +NI++    K  H DT    FKR+   G+ PDL +++I
Sbjct: 912  DDAHEMFDGMVH-YGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTI 970

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++  C  GRV        ++ ++   PD+V               YN +I+GL +    
Sbjct: 971  LVDILCIAGRVDDALHYFEKLKQAGLDPDLVA--------------YNLMINGLGRSQRT 1016

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A  LF +M+++ + P++ TY S+I          EA +++ E+   G++PNV T+N +
Sbjct: 1017 EEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNAL 1076

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +G  + A  +   M+  G  P+  T+  L
Sbjct: 1077 IRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I   CK  + S        + R+ F    V FT  + V KP    YN +IDG  +   V
Sbjct: 760 IIKVLCKHKKTS--------VARNVF----VKFTKELGV-KPTLKVYNLLIDGFLEVHNV 806

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  LF +MK     P+  TY S+I     +   NE   L+ EM+ +G +PN +T+N++
Sbjct: 807 EVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMV 866

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K+ ++D+A  L   ++     P   T+  L+DG   +GR++ A E+F  M   GC
Sbjct: 867 ISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGC 926



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           S  +++   G   + Y+++ LI+   + G       V  R++     P + TF++L+   
Sbjct: 180 SALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALM--- 236

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
                    +  G  K+  +     L  +M+   ++PN+ TYT  IR        +EA R
Sbjct: 237 ---------VASG--KRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYR 285

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M D G  P+VVT+ V++D LC   K+D+A  L   M     +PD  TY TLLD F 
Sbjct: 286 IMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFS 345

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++  ++++  ME+ G
Sbjct: 346 DCGHLDKVEKIWTEMEADG 364



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 25/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+ M   H   P   +FN +L CL KN   D  L +F ++ +    PD+ T + 
Sbjct: 596 QKAVQLFESM-NGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNT 654

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAIT------------- 122
           +I+ F K  ++ +  + L   ++    PD VT  +L+  V K   I              
Sbjct: 655 IIHGFIKQNQIKNA-IWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQV 713

Query: 123 --------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                   +  ++ G+  +   +KA     ++  + +  +      +I+  C     + A
Sbjct: 714 GSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVA 773

Query: 175 KRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           + +F++   + GV+P +  +N+++D   +   ++ A +L + M   G  PD FTYN+L+D
Sbjct: 774 RNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLID 833

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
               +G++N   +L+  M + GC
Sbjct: 834 AHGKSGKINELFDLYDEMLTRGC 856



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 13/230 (5%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L ++  P   SS + +LG L  +   D + +LF    S G  P++   +   N   ++ R
Sbjct: 79  LVVNGKPRKGSSSDEVLGVL--HSISDPIHALF-YFKSVGELPNVVHTTETCNHMLEILR 135

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V        R+    F  D++      ++ + +  TY  I   L  +G + +A     KM
Sbjct: 136 VHR------RVEDMAFVFDLMQR----QIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKM 185

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           ++     N  +Y  +I     +    EA  ++  M+ +G++P++ TF+ +M    K   +
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                LL+ M   G+RP+ +TY   +      G+++ A  +   M+  GC
Sbjct: 246 KTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGC 295


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L KN        L + +   G+FPD   ++ +I+ FCK+G VS    +   + 
Sbjct: 315 YNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMR 374

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R    PD+VT+TS              +I G+CK G + +A+E+F +M  K ++P+ VTY
Sbjct: 375 RKKIVPDIVTYTS--------------VIHGICKSGKMVEAREMFNEMLVKGLEPDEVTY 420

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T++I G+C A +  EA  +  +M+ +G+ PNVVT+  + D LCKNG++D A+ LL  M +
Sbjct: 421 TALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSR 480

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G++P+ +TYNT+++G C  G +    +L   M+  G
Sbjct: 481 KGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAG 517



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R    P  V+  +++ G     K  +    +F  +   GL PD  T++ LI+ +
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEA-REMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK G +   F V  ++++   TP+VVT+T+L                      K  +P+ 
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYNTI++GLCK G +++  +L  +M      P+ +TYT+++  +C   +  +A  L   
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRI 547

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+++ +QP +VTFNV+M+  C +G +++   L++ M++ G+ P+A T+N+L+  +C+   
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNN 607

Query: 241 VNHAKELFVSMESMG 255
           +    E++ +M   G
Sbjct: 608 MRATTEIYKAMHDRG 622



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M++   +P  V ++  +   L KN   D    L   ++  GL P++YT++ +
Sbjct: 435 EAFSVHNQMVQKGLTPN-VVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTI 493

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N  CK+G +     ++  +       D+  F        PD ITY T++D  CK G + 
Sbjct: 494 VNGLCKIGNIEQTVKLMEEM-------DLAGFY-------PDTITYTTLMDAYCKMGEMA 539

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL   M +K ++P +VT+  ++ GFC +    + +RL   M+++G+ PN  TFN +M
Sbjct: 540 KAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLM 599

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + C    M   + +   M   GV PD+ TYN L+ G C    +  A  L   M   G
Sbjct: 600 KQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG 657



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 58/295 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-KHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F  +LR +     V S N+ L  L+ N +     + +F+     G+  +  + +I
Sbjct: 189 EAQKLFHKLLR-YGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNI 247

Query: 77  LINCFCKMGRV--SHGFVV--------------------------LGRILR-------SC 101
           +++C C++G+V  +H  +V                          L ++L+         
Sbjct: 248 VLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKG 307

Query: 102 FTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
             PD   + ++I  +CK                    PD + Y T+I G CK G V  A 
Sbjct: 308 LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAAC 367

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M+ K + P++VTYTSVI G C +    EA+ +F EM+ +G++P+ VT+  ++D  
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+M EA S+ + M+Q G+ P+  TY  L DG C  G ++ A EL   M   G
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 21/221 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K  + +  + L + ++  G +PD  T++ L++ +CKMG ++    +
Sbjct: 485 PNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHEL 544

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L     P +VTF  L+                     K   P+A T+N+++   C 
Sbjct: 545 LRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCI 604

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +    E++  M D+ V P+  TY  +I+G C A +  EA  L  EM+++G      T
Sbjct: 605 KNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAAT 664

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++ ++    K  K  EA  L + M +HG+  +   Y+  +D
Sbjct: 665 YDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++ C AK    +  L   K +  +G  P+L T + LIN + K+G V      L 
Sbjct: 425 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 484

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++     PDV+TFTSLI              DGLC    +D A   F +M +  V+PNV
Sbjct: 485 MVMEHGLMPDVITFTSLI--------------DGLCHTHQLDDAFNCFSEMSEWGVRPNV 530

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I G C A   ++A  L  +M   G+ P+  +FN  +   C+  K+++A  L + 
Sbjct: 531 QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFND 590

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M ++GV PD++TYN L+   C   RV+ AKE+ ++MES+ C
Sbjct: 591 MSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISC 631



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++    K  +     +  K +   GL PD+ T + LI+  C   ++   F  
Sbjct: 458 PNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF-- 515

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +CF+       S   V +P+  TYN +I GLC  G V KA EL  KMK   + P
Sbjct: 516 ------NCFSE-----MSEWGV-RPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITP 563

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  ++ + I  FC      +A++LF +M   GV P+  T+N ++  LC   ++DEA  ++
Sbjct: 564 DAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623

Query: 214 DLM 216
             M
Sbjct: 624 LAM 626



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD  TYNT++ G+C++G VD+A  L  +M+   ++PNVVTYT ++ GFC A+   EA 
Sbjct: 211 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 270

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   M ++GV     T+  ++    +  + + A  +L   I+      +  Y+TLL  +
Sbjct: 271 CVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLL--Y 328

Query: 236 CLT 238
           CL+
Sbjct: 329 CLS 331



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN +I    + G VD A   F +M     +P+  TY +++ G C     +EA R
Sbjct: 177 RPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALR 236

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           L  +M   G++PNVVT+ +++D  C   +++EA  +L+ M + GV     TY +L+ G
Sbjct: 237 LVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 16/219 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L CL+KN      + L K+++  G      T SI+I C  K             +
Sbjct: 322 AYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVK-------------V 368

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           L S    ++V     IK         Y  II    +   + KA + F +M    +  +V 
Sbjct: 369 LESSDLCELVD--DFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVE 426

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           +Y  VI  F  A +   A      M + G  PN+VTFN +++   K G + +A + L ++
Sbjct: 427 SYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMV 486

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++HG+ PD  T+ +L+DG C T +++ A   F  M   G
Sbjct: 487 MEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++   + G    A E+F+++    ++P+   Y +VI     A   + A   F +M   
Sbjct: 150 ALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD 209

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P+  T+N ++  +C+ G +DEA  L+  M + G+RP+  TY  L+DGFC   RV  A
Sbjct: 210 GCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEA 269

Query: 245 KELFVSMESMG 255
             +   M+  G
Sbjct: 270 VCVLERMKEKG 280



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 15/193 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+  H   P V +F  ++  L      D   + F  ++  G+ P++ T+++LI+  C
Sbjct: 482 FLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLC 541

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
             G VS    +L ++     T              PDA ++N  I   C+   ++KA++L
Sbjct: 542 SAGHVSKAIELLNKMKMDGIT--------------PDAYSFNAPILSFCRMRKIEKAQKL 587

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDELC 201
           F  M    V P+  TY ++I+  C     +EAK + + M     +     T+  ++  L 
Sbjct: 588 FNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPVVGALT 647

Query: 202 KNGKMDEASSLLD 214
           K G+  EA   ++
Sbjct: 648 KMGRFSEAGMFMN 660



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N ++    +    D     F+++ + G  PD +T++ L++  C+ G V     +
Sbjct: 178 PSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRL 237

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++ R+   P+VVT+T L              +DG C    V++A  +  +MK+K V  
Sbjct: 238 VKQMERAGIRPNVVTYTML--------------VDGFCNASRVEEAVCVLERMKEKGVSA 283

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              TY S++ G     +   A R+  E ++     + + ++ ++  L KN    EA  L 
Sbjct: 284 TEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELA 343

Query: 214 DLMIQHGVRPDAFTYNTLL 232
             M + G    + T++ ++
Sbjct: 344 KKMSKRGYLLGSTTFSIVI 362


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 114/215 (53%), Gaps = 21/215 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
           LF+ +   GL  D  TH+ LIN  C+ G +     VL  ++      DVVT+T LI   C
Sbjct: 379 LFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYC 438

Query: 117 K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           K                    P+ +TY  + DGLCKQG V  A EL  +M +K ++ NV 
Sbjct: 439 KRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVY 498

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY S+I G C   +  +A R+  EM   G + +V T+  ++D LCK+G+ D A ++L  M
Sbjct: 499 TYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEM 558

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  G++P   TYN L++GFC++GRV   K+L   M
Sbjct: 559 LDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWM 593



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 24/225 (10%)

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
           K  D VL   + +   GL  D+ T+++LI+ +CK G +   F V   ++     P+VVT+
Sbjct: 409 KEADRVL---QEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTY 465

Query: 110 TSLIK-VCKP--------------------DAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
           T+L   +CK                     +  TYN++I+GLCK G +++A  +  +M+ 
Sbjct: 466 TALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEA 525

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
              + +V TYT++I   C + +++ A  +  EM+D+G++P++ T+NV+M+  C +G+++ 
Sbjct: 526 AGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEG 585

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              LL+ M++  VRP+  TYN+L+  +C+   +    E++  M S
Sbjct: 586 GKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHS 630



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 25/254 (9%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M     SPP V ++  M+         +  + L   + + GL  +   ++ +I   C
Sbjct: 278 FDEM----SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLC 333

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAI 121
             G+VS    VL  +       D V FT++I                     +    D +
Sbjct: 334 NKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRV 393

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T+  +I+GLC+ G + +A  +  +M DK +  +VVTYT +I G+C   +  EA R+  EM
Sbjct: 394 THTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM 453

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + + V PNVVT+  + D LCK G +  A+ LL  M   G+  + +TYN+L++G C  G +
Sbjct: 454 VGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNL 513

Query: 242 NHAKELFVSMESMG 255
             A  +   ME+ G
Sbjct: 514 EQAMRIMTEMEAAG 527



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +   L K         L   + + GL  ++YT++ LIN  CK G +     +
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRI 519

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  +    DV T+T              T+ID LCK G  D+A  +  +M DK +KP
Sbjct: 520 MTEMEAAGHRTDVYTYT--------------TLIDTLCKSGEFDRAHNMLQEMLDKGIKP 565

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY  ++ GFC +      K+L   M+++ V+PNVVT+N +M + C +  M   + + 
Sbjct: 566 SIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIY 625

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
             M    V P+  TYN L+ G C
Sbjct: 626 KGMHSQEVAPNENTYNILIKGHC 648



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 16/195 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++  ++  L K+  +D   ++ + +   G+ P + T+++L+N FC  GRV  G  +L 
Sbjct: 532 VYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLE 591

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L               K  +P+ +TYN+++   C    +    E++  M  + V PN 
Sbjct: 592 WMLE--------------KNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNE 637

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I+G C A +  EA     EM+++G++    +++ ++  L K  K  EA    D 
Sbjct: 638 NTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDK 697

Query: 216 MIQHGV--RPDAFTY 228
           M   G+   PD +++
Sbjct: 698 MRNEGLTAEPDVYSF 712


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 137/252 (54%), Gaps = 22/252 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M R   +   V+ +  M+  L +    +    L + + +  L  D  T+++LI+ +C
Sbjct: 384 FDEMQRKGLATDGVT-YTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYC 442

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAI 121
           K G+++  F +   +++   TP+VVT+T+L   +CK                     +A 
Sbjct: 443 KRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNAC 502

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN++I+GLCK G++++A      M    +KP+V TYT++I   C + D + A  L  EM
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEM 562

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D+G++P +VT+NV+M+  C +G+++    LLD M++  + P+A TYN+L+  +C+   +
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNM 622

Query: 242 NHAKELFVSMES 253
               E++  M S
Sbjct: 623 KSTTEIYKGMRS 634



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI+L  L           LF  + S    PD+ T+ ILI+  C +G + +   +L 
Sbjct: 259 VCSYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLD 315

Query: 96  RILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCKQG 134
            ++     P+   +TS++ + C                      D   Y T++ G C +G
Sbjct: 316 EMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKG 375

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A+  F +M+ K +  + VTYT++I G C A +  EA++L  EM  + +  + VT+ 
Sbjct: 376 DLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYT 435

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           V++D  CK GKM EA  + + M+Q GV P+  TY  L DG C  G V  A EL   M + 
Sbjct: 436 VLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNK 495

Query: 255 G 255
           G
Sbjct: 496 G 496



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +   L K         L   +++ GL  +  T++ LIN  CK G +      
Sbjct: 464 PNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRT 523

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +  +C  PDV T+T+LI                     K  KP  +TYN +++G C 
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+  K+L   M +KN+ PN  TY S+++ +C  N+      ++  M  + V PN  T
Sbjct: 584 SGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENT 643

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK   M EA    D MIQ G R  A +Y+ L+       +   A+ELF  M 
Sbjct: 644 YNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMR 703

Query: 253 SMG 255
             G
Sbjct: 704 KEG 706



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 14/197 (7%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           F  +   GL  D  T++ +IN  C+   +     +L  +           +   + V   
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEM-----------WARRLDV--- 429

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D +TY  +IDG CK+G + +A ++   M  + V PNVVTYT++  G C   D   A  L 
Sbjct: 430 DEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELL 489

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM ++G++ N  T+N +++ LCK G +++A   +  M    ++PD +TY TL+D  C +
Sbjct: 490 HEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549

Query: 239 GRVNHAKELFVSMESMG 255
           G ++ A  L   M   G
Sbjct: 550 GDLDRAHSLLQEMLDKG 566



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K+   D   SL + +   G+ P + T+++L+N FC  GRV  G  +
Sbjct: 534 PDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKL 593

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L               K   P+A TYN+++   C +  +    E++  M+ ++V P
Sbjct: 594 LDWMLE--------------KNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGP 639

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY  +I+G C A +  EA     EM+ +G +    +++ ++  L K  K  EA  L 
Sbjct: 640 NENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELF 699

Query: 214 DLMIQHGVRPDAFTYNTLLD 233
             M + G+  ++  Y+  +D
Sbjct: 700 HDMRKEGLTAESDVYDFYID 719



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 27/196 (13%)

Query: 69  PDLYTHSILINCFCKMGRVS-------HGFVVLGRILR--SCFTPDVVTFTSLIKVCKPD 119
           P  + H  L+ CF     ++           +L R +R  S     V  + S  K    D
Sbjct: 144 PQQHPHPHLLRCFAVAAHLAVLRGGGGAARAILSRAVRFPSPHRHFVEHYISTYKTFSSD 203

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             +++ ++  LC       +  L  +++   + P+     +V+         +EA  LF 
Sbjct: 204 PASFDFLL--LCL-----PSAPLLRRLRQYGISPSPEACNAVLSRL----PLDEAIELFQ 252

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           E+  +    NV ++N+++  LC  G++ +A  L D M      PD  TY  L+ G C  G
Sbjct: 253 ELPHK----NVCSYNILLKALCDAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALG 305

Query: 240 RVNHAKELFVSMESMG 255
            + +A +L   M + G
Sbjct: 306 ELENAVKLLDEMVAGG 321


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL I+  M R     P + SF+ ++G  A+    D  ++  + +   GL PD   +++
Sbjct: 217 EEALKIYKEM-RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I  FC+ G +S    V   ++     PDVVT+ +L+  +CK                  
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+ T+I G C +G +DKA +LF  M ++ ++P++VTY ++I G C   D ++A 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ +M  + + PN VT+++++D  C+ G++++A   LD MI  G+ P+  TYN+++ G+
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 236 CLTGRVNHAKELFVSM 251
           C +G V+  ++    M
Sbjct: 456 CRSGNVSKGQKFLQKM 471



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 25/234 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF I++G   +    +  L ++K +   G+ PDL + S LI  F + G++ H    
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257

Query: 94  LGRILRSCF--TPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
           L R +R CF   PD V +T +I                       C PD +TYNT+++GL
Sbjct: 258 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+  +  A+ L  +M+++ V P++ T+T++I G+C     ++A +LF  M++Q ++P++
Sbjct: 316 CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 375

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           VT+N ++D +C+ G +D+A+ L D M    + P+  TY+ L+D  C  G+V  A
Sbjct: 376 VTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 429



 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 29/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L ++  +D    +FK ++  G+ PD+ + +ILI  FC++G +     +
Sbjct: 163 PGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKI 222

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +      PD+V+F+ LI +                       PD + Y  +I G C+
Sbjct: 223 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCR 282

Query: 133 QGFVDKAKELFLKMKDKNVK----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G +  A    L+++D+ V     P+VVTY +++ G C      +A+ L  EM ++GV P
Sbjct: 283 AGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 338

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ TF  ++   C  GK+D+A  L D M+   +RPD  TYNTL+DG C  G ++ A +L+
Sbjct: 339 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLW 398

Query: 249 VSMES 253
             M S
Sbjct: 399 DDMHS 403



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L K +       L   +   G+ PDL T + LI+ +C  G++     +
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD+VT+ +LI  +C+                    P+ +TY+ +ID  C+
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 422

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V+ A     +M +K + PN++TY S+I+G+C + + ++ ++   +MM   V P+++T
Sbjct: 423 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 482

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    K  KM +A  LL++M +  V+PD  TYN L++GF + G V  A  +F  M 
Sbjct: 483 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 542

Query: 253 SMG 255
           + G
Sbjct: 543 AKG 545



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +FD ML     P  V+ +N ++  + +    D    L+  ++S  +FP+  T+SI
Sbjct: 357 DKALQLFDTMLNQRLRPDIVT-YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 415

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G+V   F  L  ++     P++              +TYN+II G C+ G V
Sbjct: 416 LIDSHCEKGQVEDAFGFLDEMINKGILPNI--------------MTYNSIIKGYCRSGNV 461

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            K ++   KM    V P+++TY ++I G+   +  ++A +L   M  + VQP+VVT+N++
Sbjct: 462 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNML 521

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G + EA  + + M   G+ PD +TY ++++G    G    A +L   M   G
Sbjct: 522 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + NIM+    K   +D V ++   +    +FPD+ TH+++++   + G       ++  +
Sbjct: 97  TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 156

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +               K  KP  +TYN+++ GLC+ G  DKA E+F +M D  V P+V +
Sbjct: 157 VS--------------KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 202

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +T +I GFC   +  EA +++ EM  +G++P++V+F+ ++    + GKMD A + L  M 
Sbjct: 203 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR 262

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G+ PD   Y  ++ GFC  G ++ A  +   M   GC
Sbjct: 263 CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 301


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 24/249 (9%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R+ P P    S N +L  L+K    D     FK + + G+   ++T++I+I+  CK G +
Sbjct: 16  RVFPKP---RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDL 72

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTI 126
                +  ++  + FTPD+VT+ SLI                       C PD ITYN +
Sbjct: 73  EMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 132

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+  CK   + KA E   +MK   +KPNVVTY++ I  FC      EA + F++M    +
Sbjct: 133 INCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVAL 192

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PN  T+  ++D  CK G + EA  L++ ++Q G++ +  TY  LLDG C  GR+  A+E
Sbjct: 193 TPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEE 252

Query: 247 LFVSMESMG 255
           +F +M + G
Sbjct: 253 VFRAMLNAG 261



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++NIM+  L K    +   SLF ++   G  PD+ T++ LI+   K+G +     +  
Sbjct: 56  VFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE 115

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           ++  +   PDV+T+ +LI                        KP+ +TY+T ID  CK+G
Sbjct: 116 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 175

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A + F+ M+   + PN  TYTS+I   C A +  EA +L  E++  G++ NVVT+ 
Sbjct: 176 MLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 235

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            ++D LC+ G+M EA  +   M+  GV P+  TY  L+ GF     + +AK++   M+ 
Sbjct: 236 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 294



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E +CIF+ M +     P V ++N ++ C  K +           + + GL P++ T+S 
Sbjct: 108 DECICIFEQM-KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYST 166

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP----------------- 118
            I+ FCK G +         + R   TP+  T+TSLI   CK                  
Sbjct: 167 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 226

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              + +TY  ++DGLC++G + +A+E+F  M +  V PN  TYT+++ GF  A +   AK
Sbjct: 227 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAK 286

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM ++ ++P+++ +  I+  LC   +++EA  L+  + + G+  +A  Y TL+D +
Sbjct: 287 DILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAY 346

Query: 236 CLTGRVNHAKELFVSM 251
             +G+   A  L   M
Sbjct: 347 FKSGQATEALTLLEEM 362



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++    K    D  + +F+++      PD+ T++ LINCFCK  R+   F  
Sbjct: 89  PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  +  +   P+VVT+++ I   CK                    P+  TY ++ID  CK
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A +L  ++    +K NVVTYT+++ G C      EA+ +F  M++ GV PN  T
Sbjct: 209 AGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQET 268

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++    K  +M+ A  +L  M +  ++PD   Y T+L G C   R+  AK L   ++
Sbjct: 269 YTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 328

Query: 253 SMG 255
             G
Sbjct: 329 ESG 331



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 10/247 (4%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  ML    +P    ++  ++    K K  +    + K +    + PDL  +  +
Sbjct: 249 EAEEVFRAMLNAGVAPNQ-ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTI 307

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-----KPDAITYNT----IID 128
           +   C   R+    +++G I  S    + V +T+L+          +A+T       ++D
Sbjct: 308 LWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVD 367

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK    + AK+LF +M DK + P+ + YT++I G     +  EA  L   M++ G++ 
Sbjct: 368 GLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMEL 427

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++  +  ++  L  +G++ +A +LLD MI  GV PD   Y  L+  +   G+V+ A EL 
Sbjct: 428 DLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQ 487

Query: 249 VSMESMG 255
             M   G
Sbjct: 488 NEMAKRG 494



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 65/121 (53%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A E FLKM+   V P   +  +++         + +++ F +M   G++ +V T+N+
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D LCK G ++ A SL   M + G  PD  TYN+L+DG    G ++    +F  M+   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 256 C 256
           C
Sbjct: 122 C 122


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++     P V S++ ++           VL L + +   GL P+LYT++ +I   CK G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V        R+LR      +V          PD + Y T+IDG CK G +  A +LF +M
Sbjct: 61  VDDA----ERVLREMINQGIV----------PDTVVYTTLIDGFCKLGNIQAAYKLFDEM 106

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           + + + P+ + YT+VI G C      EA ++F +M  +GV+P+ VT+  ++D  CK+G+M
Sbjct: 107 EKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEM 166

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++A SL + M+Q G+ P+  TY  L DG C  G+V+ A EL   M
Sbjct: 167 EKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 139/255 (54%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M +    P  ++   ++ G     K  +    +F ++ S G+ PD  T++ LI+ +
Sbjct: 102 LFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEAD-KVFNKMFSRGVEPDEVTYTTLIDGY 160

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI------------------- 121
           CK G +   F +  ++++S  TP+VVT+T+L   +CK   +                   
Sbjct: 161 CKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNI 220

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYN++++GLCK G + +A +L  +M+   + P+ +T+T+++  +C   +  +A  L  E
Sbjct: 221 CTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLRE 280

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+D+G+QP V+TFNV+M+  C +G +++   LL  M++ G+ P+  TYN+L+  +C+   
Sbjct: 281 MLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNN 340

Query: 241 VNHAKELFVSMESMG 255
           +    E++  M + G
Sbjct: 341 MRCTTEIYKGMCARG 355



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M      P  V+ +  ++    K+   +   SL  ++  +GL P++ T++ L
Sbjct: 133 EADKVFNKMFSRGVEPDEVT-YTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
            +  CK+G+V     +L  +       ++ T+ SL+  +CK                   
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD IT+ T++D  CK G + KA EL  +M D+ ++P V+T+  ++ GFC +    + +R
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGER 311

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+++G+ PN  T+N +M + C    M   + +   M   GV PD+ TYN L+ G C
Sbjct: 312 LLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHC 371

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  A  L   M   G
Sbjct: 372 KARNMKEAWFLHKEMAEKG 390



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +   L K    DT   L   +   GL  ++ T++ L+N  CK G +     +
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           +  +  +   PD +TFT+L+   CK                    P  IT+N +++G C 
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++  + L   M +K + PN  TY S+++ +C  N+      ++  M  +GV P+  T
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK   M EA  L   M + G    A +YN+++ GF    +++ A+ELF  M 
Sbjct: 363 YNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMR 422

Query: 253 SMG 255
             G
Sbjct: 423 REG 425



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 21/233 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++  L K+ +    + L + +   G++PD  T + L++ +CK G +     +L 
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +L     P V+TF  L+                     K   P+  TYN+++   C + 
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN 339

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +    E++  M  + V P+  TY  +I+G C A +  EA  L  EM ++G      ++N
Sbjct: 340 NMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYN 399

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            I+    K  K+ EA  L + M + G+  DA  YN  +D     G +  A EL
Sbjct: 400 SIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALEL 452



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F  ++    K         L + +   GL P + T ++L+N FC  G +  G  +
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCK 132
           L  +L     P+  T+ SL+K                 +C     PD+ TYN +I G CK
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCK 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L  +M +K       +Y S+I+GF      +EA+ LF EM  +G+  +   
Sbjct: 373 ARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEI 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQH 219
           +N+ +D     G M+ A  L D  I++
Sbjct: 433 YNLFVDISYGEGNMETALELCDEAIEN 459


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++ C AK    +  L   K +  +G  P+L T + LIN + K+G V      L 
Sbjct: 425 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 484

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++     PDV+TFTSLI              DGLC    +D A   F +M +  V+PNV
Sbjct: 485 MVMEHGLMPDVITFTSLI--------------DGLCHTHQLDDAFNCFSEMSEWGVRPNV 530

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I G C A   ++A  L  +M   G+ P+  +FN  +   C+  K+++A  L + 
Sbjct: 531 QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFND 590

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M ++GV PD++TYN L+   C   RV+ AKE+ ++MES+ C
Sbjct: 591 MSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISC 631



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++    K  +     +  K +   GL PD+ T + LI+  C   ++   F  
Sbjct: 458 PNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF-- 515

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +CF+       S   V +P+  TYN +I GLC  G V KA EL  KMK   + P
Sbjct: 516 ------NCFSE-----MSEWGV-RPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITP 563

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  ++ + I  FC      +A++LF +M   GV P+  T+N ++  LC   ++DEA  ++
Sbjct: 564 DAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623

Query: 214 DLM 216
             M
Sbjct: 624 LAM 626



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD  TYNT++ G+C++G VD+A  L  +M+   ++PNVVTYT ++ GFC A+   EA 
Sbjct: 211 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 270

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   M ++GV     T+  ++    +  + + A  +L   I+      +  Y+TLL  +
Sbjct: 271 CVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLL--Y 328

Query: 236 CLT 238
           CL+
Sbjct: 329 CLS 331



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN +I    + G VD A   F +M     +P+  TY +++ G C     +EA R
Sbjct: 177 RPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALR 236

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           L  +M   G++PNVVT+ +++D  C   +++EA  +L+ M + GV     TY +L+ G
Sbjct: 237 LVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L CL+KN      + L K+++  G      T SI+I C  K             +
Sbjct: 322 AYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVK-------------V 368

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L S    ++V    + K        Y  II    +   + KA + F +M    +  +V +
Sbjct: 369 LESSDLCELVD-DFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVES 427

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  VI  F  A +   A      M + G  PN+VTFN +++   K G + +A + L +++
Sbjct: 428 YNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVM 487

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +HG+ PD  T+ +L+DG C T +++ A   F  M   G
Sbjct: 488 EHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++   + G    A E+F+++    ++P+   Y +VI     A   + A   F +M   
Sbjct: 150 ALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPAD 209

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P+  T+N ++  +C+ G +DEA  L+  M + G+RP+  TY  L+DGFC   RV  A
Sbjct: 210 GCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEA 269

Query: 245 KELFVSMESMG 255
             +   M+  G
Sbjct: 270 VCVLERMKEKG 280



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N ++    +    D     F+++ + G  PD +T++ L++  C+ G V     +
Sbjct: 178 PSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRL 237

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++ R+   P+VVT+T L              +DG C    V++A  +  +MK+K V  
Sbjct: 238 VKQMERAGIRPNVVTYTML--------------VDGFCNASRVEEAVCVLERMKEKGVSA 283

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              TY S++ G     +   A R+  E ++     + + ++ ++  L KN    EA  L 
Sbjct: 284 TEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMDKEAVELA 343

Query: 214 DLMIQHGVRPDAFTYNTLL 232
             M + G    + T++ ++
Sbjct: 344 KKMSKRGYLLGSTTFSIVI 362



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+  H   P V +F  ++  L      D   + F  ++  G+ P++ T+++LI+  C
Sbjct: 482 FLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLC 541

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
             G VS    +L ++     T              PDA ++N  I   C+   ++KA++L
Sbjct: 542 SAGHVSKAIELLNKMKMDGIT--------------PDAYSFNAPILSFCRMRKIEKAQKL 587

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           F  M    V P+  TY ++I+  C     +EAK + + M
Sbjct: 588 FNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAM 626


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL I+  M R     P + SF+ ++G  A+    D  ++  + +   GL PD   +++
Sbjct: 278 EEALKIYKEM-RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I  FC+ G +S    V   ++     PDVVT+ +L+  +CK                  
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+ T+I G C +G +DKA +LF  M ++ ++P++VTY ++I G C   D ++A 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ +M  + + PN VT+++++D  C+ G++++A   LD MI  G+ P+  TYN+++ G+
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516

Query: 236 CLTGRVNHAKELFVSM 251
           C +G V+  ++    M
Sbjct: 517 CRSGNVSKGQKFLQKM 532



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF I++G   +    +  L ++K +   G+ PDL + S LI  F + G++ H    
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      PD V +T +I                       C PD +TYNT+++GLCK
Sbjct: 319 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 378

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +  A+ L  +M+++ V P++ T+T++I G+C     ++A +LF  M++Q ++P++VT
Sbjct: 379 ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 438

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +N ++D +C+ G +D+A+ L D M    + P+  TY+ L+D  C  G+V  A
Sbjct: 439 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 490



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 29/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L ++  +D    +FK ++  G+ PD+ + +ILI  FC++G +     +
Sbjct: 224 PGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKI 283

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +      PD+V+F+ LI +                       PD + Y  +I G C+
Sbjct: 284 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCR 343

Query: 133 QGFVDKAKELFLKMKDKNVK----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G +  A    L+++D+ V     P+VVTY +++ G C      +A+ L  EM ++GV P
Sbjct: 344 AGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 399

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ TF  ++   C  GK+D+A  L D M+   +RPD  TYNTL+DG C  G ++ A +L+
Sbjct: 400 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLW 459

Query: 249 VSMES 253
             M S
Sbjct: 460 DDMHS 464



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L K +       L   +   G+ PDL T + LI+ +C  G++     +
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD+VT+ +LI  +C+                    P+ +TY+ +ID  C+
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V+ A     +M +K + PN++TY S+I+G+C + + ++ ++   +MM   V P+++T
Sbjct: 484 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 543

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    K  KM +A  LL++M +  V+PD  TYN L++GF + G V  A  +F  M 
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603

Query: 253 SMG 255
           + G
Sbjct: 604 AKG 606



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +FD ML     P  V+ +N ++  + +    D    L+  ++S  +FP+  T+SI
Sbjct: 418 DKALQLFDTMLNQRLRPDIVT-YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 476

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G+V   F  L  ++     P++              +TYN+II G C+ G V
Sbjct: 477 LIDSHCEKGQVEDAFGFLDEMINKGILPNI--------------MTYNSIIKGYCRSGNV 522

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            K ++   KM    V P+++TY ++I G+   +  ++A +L   M  + VQP+VVT+N++
Sbjct: 523 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNML 582

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G + EA  + + M   G+ PD +TY ++++G    G    A +L   M   G
Sbjct: 583 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 641



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 16/219 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + NIM+    K   +D V ++   +    +FPD+ TH+++++   + G       ++  +
Sbjct: 158 TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 217

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +               K  KP  +TYN+++ GLC+ G  DKA E+F +M D  V P+V +
Sbjct: 218 VS--------------KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 263

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +T +I GFC   +  EA +++ EM  +G++P++V+F+ ++    + GKMD A + L  M 
Sbjct: 264 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMR 323

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G+ PD   Y  ++ GFC  G ++ A  L V  E +GC
Sbjct: 324 CFGLVPDGVIYTMVIGGFCRAGLMSDA--LRVRDEMVGC 360


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 24/260 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F++M R+H   P + +  ++L  LAK +  + V  ++K++   G+ P+++  ++
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+  CK G V     +L  +      PD+ T+ +LI + CK                  
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TYN++I G C++G + +A  LF ++      PN VTYT++I G+C  ND  EA 
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEAL 320

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M  +G+ P VVT+N I+ +LC+ GK+ +A+ LL+ M +  V PD  T NTL++ +
Sbjct: 321 RLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +  A ++   M   G
Sbjct: 381 CKIGDMGSAMKVKKKMLEAG 400



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 19/241 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN+++    K+   +    L   + S  +FPDL+T++ LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK------------------PDAITYNTIIDGLCKQG 134
             R+ R   +PD+VT+ SLI   C+                  P+ +TY T+IDG C+  
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVN 314

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +++A  L   M+ + + P VVTY S++R  C      +A RL  EM ++ V+P+ VT N
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +++  CK G M  A  +   M++ G++PD FT+  L+ GFC    V+ AKE    M   
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA 434

Query: 255 G 255
           G
Sbjct: 435 G 435



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 24/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL I D M R   SP  V+ +N ++    +       L LF+ +N  G  P+  T++ L
Sbjct: 250 EALGIQDRMERGGVSPDIVT-YNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTL 306

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ +C++  +     +   +      P VVT+ S++ K+C+                   
Sbjct: 307 IDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T NT+I+  CK G +  A ++  KM +  +KP+  T+ ++I GFC  ++ + AK 
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              EM+D G  P+  T++ ++D        +    L D + + G+  D   Y  L+   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 237 LTGRVNHAKELFVSMESMG 255
              ++  A+ +F  M+  G
Sbjct: 487 KIDKIESAERIFTLMQGKG 505



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 16/220 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L +         L   ++   + PD  T + LIN +CK+G +     V
Sbjct: 333 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++L +                KPD  T+  +I G CK   VD AKE   +M D    P
Sbjct: 393 KKKMLEAGL--------------KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438

Query: 154 NVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           +  TY+ ++  + Y  D  EA  RL  E+  +G+  ++  +  ++  LCK  K++ A  +
Sbjct: 439 SYSTYSWLVDSY-YDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERI 497

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             LM   G++ D+  Y +L   +   G+   A ++   M+
Sbjct: 498 FTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMD 537



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-------GRVSHGFVVL 94
           M+  LAK+K + T  +L +R+       D  +   ++N   ++        ++    V+ 
Sbjct: 81  MIHTLAKHKQFKTAQNLLERI----AVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIF 136

Query: 95  GRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                S  T D +     ++V   KP       +++ L K    +   +++ KM    V 
Sbjct: 137 --YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVV 194

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+  +  +I   C + D  +A++L  EM  + + P++ T+N ++   CK G   EA  +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            D M + GV PD  TYN+L+ GFC  GR+  A  LF
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLF 290


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 24/260 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F++M R+H   P + +  ++L  LAK +  + V  ++K++   G+ P+++  ++
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+  CK G V     +L  +      PD+ T+ +LI + CK                  
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TYN++I G C++G + +A  LF ++      PN VTYT++I G+C  ND  EA 
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEAL 320

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M  +G+ P VVT+N I+ +LC+ GK+ +A+ LL+ M +  V PD  T NTL++ +
Sbjct: 321 RLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +  A ++   M   G
Sbjct: 381 CKIGDMGSAMKVKKKMLEAG 400



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 19/241 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN+++    K+   +    L   + S  +FPDL+T++ LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK------------------PDAITYNTIIDGLCKQG 134
             R+ R   +PD+VT+ SLI   C+                  P+ +TY T+IDG C+  
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVN 314

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +++A  L   M+ + + P VVTY S++R  C      +A RL  EM ++ V+P+ VT N
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +++  CK G M  A  +   M++ G++PD FT+  L+ GFC    V+ AKE    M   
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA 434

Query: 255 G 255
           G
Sbjct: 435 G 435



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 24/259 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL I D M R   SP  V+ +N ++    +       L LF+ +N  G  P+  T++ L
Sbjct: 250 EALGIQDRMERGGVSPDIVT-YNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTL 306

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ +C++  +     +   +      P VVT+ S++ K+C+                   
Sbjct: 307 IDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T NT+I+  CK G +  A ++  KM +  +KP+  T+ ++I GFC  ++ + AK 
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              EM+D G  P+  T++ ++D        +    L D + + G+  D   Y  L+   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 237 LTGRVNHAKELFVSMESMG 255
              ++  A+ +F  M+  G
Sbjct: 487 KIDKIESAERIFTLMQGKG 505



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 16/220 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L +         L   ++   + PD  T + LIN +CK+G +     V
Sbjct: 333 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++L +                KPD  T+  +I G CK   VD AKE   +M D    P
Sbjct: 393 KKKMLEAGL--------------KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438

Query: 154 NVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           +  TY+ ++  + Y  D  EA  RL  E+  +G+  ++  +  ++  LCK  K++ A  +
Sbjct: 439 SYSTYSWLVDSY-YDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERI 497

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             LM   G++ D+  Y +L   +   G+   A ++   M+
Sbjct: 498 FTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMD 537



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM-------GRVSHGFVVL 94
           M+  LAK+K + T  +L +R+       D  +   ++N   ++        ++    V+ 
Sbjct: 81  MIHTLAKHKQFKTAQNLLERI----AVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIF 136

Query: 95  GRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                S  T D +     ++V   KP       +++ L K    +   +++ KM    V 
Sbjct: 137 --YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVV 194

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN+  +  +I   C + D  +A++L  EM  + + P++ T+N ++   CK G   EA  +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            D M + GV PD  TYN+L+ GFC  GR+  A  LF
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLF 290


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF+ M++     P  S++  +L   A   +   + ++   +   G+ P  +  +I 
Sbjct: 375 EAREIFNSMIQ-SGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIE 433

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +CK GR+    +   ++ +  F PD+V +T              T+IDGLCK G +D
Sbjct: 434 IYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYT--------------TVIDGLCKIGRLD 479

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D  + P+++T+ ++I GF     W +A+ LF EMMD+G+ PNV TFN ++
Sbjct: 480 DAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMI 539

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D+L K GK+ EA  L DLM + G +P+  +YNT++ G+ + G V    +L   M  +G
Sbjct: 540 DKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 597



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 143/311 (45%), Gaps = 70/311 (22%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTV-------LSLFKRLNSTG 66
           + P +AL +FD +L+    P  + + N +L  +A+     +V       +S+F R+   G
Sbjct: 78  LGPEDALDLFDELLQ-RARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAG 136

Query: 67  ---LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF--------------------- 102
              + PD+ T  ILI+C C  G ++ GF  LG+I+++                       
Sbjct: 137 AKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTS 196

Query: 103 ---------------TPDVVTFTSLIKV-----------------------CKPDAITYN 124
                          TPDV ++T+L+K                        C P+ ++Y 
Sbjct: 197 DAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYT 256

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+I G  K+G V KA  LF KM D  + PNVVT  SVI G C     ++A+ +  +M+D+
Sbjct: 257 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 316

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + PN  T+N ++     +G+  EA  +L  M + G RP+  TY+ L+D  C +G    A
Sbjct: 317 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEA 376

Query: 245 KELFVSMESMG 255
           +E+F SM   G
Sbjct: 377 REIFNSMIQSG 387



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 28/231 (12%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR---SCFT 103
           A+ +  D +  + +R+   G  PD+++++ L+   C   +      ++  +     +C  
Sbjct: 191 AEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNC-P 249

Query: 104 PDVVTFTSLIK--------------VCK-------PDAITYNTIIDGLCKQGFVDKAKEL 142
           P+VV++T++I                CK       P+ +T N++IDGLCK   +DKA+ +
Sbjct: 250 PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 309

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +M D+++ PN  TY S+I G+  +  W EA R+  EM   G +PNVVT+++++D LCK
Sbjct: 310 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCK 369

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV---NHAKELFVS 250
           +G   EA  + + MIQ G +P+A TY +LL G+   G +   N+ K+L V 
Sbjct: 370 SGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQ 420



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 56/279 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+  ++    K        +LF ++   G+ P++ T + +I+  CK+  +     
Sbjct: 249 PPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 308

Query: 93  VLGRILRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLC 131
           VL +++     P+  T+ SLI             ++ K        P+ +TY+ +ID LC
Sbjct: 309 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLC 368

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG--------------------------- 164
           K G   +A+E+F  M     KPN  TY S++ G                           
Sbjct: 369 KSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRH 428

Query: 165 --------FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                   +C     +EA   F +M  QG  P++V +  ++D LCK G++D+A S    M
Sbjct: 429 VFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I  G+ PD  T+NTL+ GF L G+   A+ELF  M   G
Sbjct: 489 IDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRG 527



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 41/261 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI +    K    D     F ++   G  PD+  ++ +I+  CK+GR+      
Sbjct: 425 PGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSR 484

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++    +PD++TF +LI                     +   P+  T+N++ID L K
Sbjct: 485 FCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFK 544

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM---------- 182
           +G V +A++LF  M     KPNVV+Y ++I G+  A +  E  +L  +M+          
Sbjct: 545 EGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVT 604

Query: 183 ---------DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
                      G++P+VVT   ++D  C++G++++  +L   M+    + D  T N  L 
Sbjct: 605 FNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLR 664

Query: 234 GFCLTGRVNHAKELFVSMESM 254
           G  +     H   + +S++++
Sbjct: 665 GVTVKASY-HCSSVVISLKAL 684


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 57/294 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IF  ML    SP  +S F+ ++G  ++N H D  L  F+ + ++GL PD   ++IL
Sbjct: 308 EAKDIFSDMLHRGVSPDLIS-FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 78  INCFCKMGRVSHGFVVLGRIL-RSC----------------------------------F 102
           IN +C+ G +S    +  ++L + C                                   
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGV 426

Query: 103 TPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            PD  TFT+LI                     K  KPD +TYN +IDG CK   ++KA E
Sbjct: 427 VPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANE 486

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L+ +M  + + PN ++Y  ++ G+C     +EA RL+ EM+ +G++P +VT N ++   C
Sbjct: 487 LWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC 546

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++G + +A   L  MI  GV PD+ TYNTL++GF     ++ A  L   ME+ G
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKG 600



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 15/227 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F  M + +  P  V+ +NI++    K    +    L+  + S  +FP+  +++IL
Sbjct: 448 KALSLFGIMTQKNIKPDIVT-YNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAIL 506

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N +C +G VS  F +   ++R              K  KP  +T NT+I G C+ G + 
Sbjct: 507 VNGYCNLGFVSEAFRLWDEMIR--------------KGIKPTLVTCNTVIKGYCRSGDLS 552

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA E   KM  + V P+ +TY ++I GF      ++A  L  +M  +G+QP+VVT+NVI+
Sbjct: 553 KADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVIL 612

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +  C+ G+M EA  +L  MI+ G+ PD  TY TL++G+     +  A
Sbjct: 613 NGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K   Y     +F  + S GL PD  T++ L+   C+         +
Sbjct: 253 PTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDI 312

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +L    +PD+++F+SLI V                       PD + Y  +I+G C+
Sbjct: 313 FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCR 372

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A E+  KM ++    +VV Y +++ G C      +A  LF EM+++GV P+  T
Sbjct: 373 NGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCT 432

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   CK G M +A SL  +M Q  ++PD  TYN L+DGFC T  +  A EL+  M 
Sbjct: 433 FTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMI 492

Query: 253 S 253
           S
Sbjct: 493 S 493



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L K+   D V      +   G+F D+ T++ LIN +C+ G +   F V+ 
Sbjct: 185 VYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMN 244

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +                K  KP   TYN +I+GLCK+G   +AK +F +M    + P+ 
Sbjct: 245 SMSG--------------KGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +++   C  N++ EAK +F +M+ +GV P++++F+ ++    +NG +D+A      
Sbjct: 291 TTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRD 350

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G+ PD   Y  L++G+C  G ++ A E+   M   GC
Sbjct: 351 MKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGC 391



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 77/132 (58%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N+++ GL K G+VD A E++ ++    ++ NV T   ++   C  +  ++ K   I+M  
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQ 213

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +G+  ++VT+N +++  C+ G + EA  +++ M   G++P  FTYN +++G C  GR   
Sbjct: 214 KGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVR 273

Query: 244 AKELFVSMESMG 255
           AK +F  M S+G
Sbjct: 274 AKGVFNEMLSIG 285



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 5/192 (2%)

Query: 69  PDLY-THSILINCF-CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---CKPDAITY 123
           PD +    IL+N    +  R+S    ++ R++R      V    SLI +   C  D + +
Sbjct: 59  PDSFLVEKILLNLRRVRSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVF 118

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I    +   +++  + F  ++ K    ++    S++ G       + A  ++ E+  
Sbjct: 119 DLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIAR 178

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            G++ NV T N++++ LCK+ K+D+    L  M Q G+  D  TYNTL++ +C  G +  
Sbjct: 179 SGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGE 238

Query: 244 AKELFVSMESMG 255
           A E+  SM   G
Sbjct: 239 AFEVMNSMSGKG 250


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N+++  + +    D  + L ++L S G  PD+ +++ ++   C   R      ++  ++R
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVR 241

Query: 100 SCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDK 138
               P+V TF +LI                       C PD   Y TIIDG+CK G  + 
Sbjct: 242 VGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEV 301

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++  +M    +KPNVV Y +V++G C A  W EA+ L  EM  +    + VTFN+++D
Sbjct: 302 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             C+NG +D    LL+ M++HG  PD  TY T+++GFC  G V+ A  L  +M + GC
Sbjct: 362 FFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGC 419



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P +  +  ++  + K+ H++    +  R+ S GL P++  ++ ++   C   R   
Sbjct: 277 HGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEE 336

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIID 128
              +L  + +     D VTF  L+                       C PD ITY T+I+
Sbjct: 337 AEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVIN 396

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+G VD+A  L   M     KPN ++YT V++G C A  W +A+ L   M+ QG  P
Sbjct: 397 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 456

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N VTFN +++ +CK G +++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL 
Sbjct: 457 NPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 516

Query: 249 VSMESMG 255
             M + G
Sbjct: 517 NVMINKG 523



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V++FN ++  L +N  ++ V     ++   G  PDL  ++ +I+  CK G       
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 304

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L R+      P+VV + +++K                      C  D +T+N ++D  C
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G VD+  EL  +M +    P+V+TYT+VI GFC     +EA  L   M   G +PN +
Sbjct: 365 QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTI 424

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ +++  LC+  +  +A  L+  MIQ G  P+  T+NTL++  C  G V  A EL   M
Sbjct: 425 SYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQM 484

Query: 252 ESMGC 256
              GC
Sbjct: 485 LVNGC 489



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G V    ++L  +
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C P+ +T+NT+I+ +CK+G V
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ +
Sbjct: 475 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 534

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G+ D+   + D +    VR DA  YN ++   C     + A + F  M S GC
Sbjct: 535 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 594



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRI-LRSCF-TPDVV-----------TFTSLIKV 115
           P+ YT+  ++   C  G ++    VL  + LR C  TP +             F S ++ 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C  D+   N ++  +C+QG VD+  EL  K+     +P++V+Y +V++G C 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W++ + L +EM+  G  PNV TFN ++  LC+NG  ++    L  M +HG  PD   
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRM 285

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y T++DG C  G    A ++   M S G
Sbjct: 286 YATIIDGICKDGHHEVANDILSRMPSYG 313



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 22/251 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K +++ G  P+  +++I++   
Sbjct: 375 LLEQMLE-HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C+  R      ++  +++    P+ VTF +LI                       C PD 
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDL 493

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          ++  ++F  
Sbjct: 494 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 553

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  V+ +   +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 554 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGL 613

Query: 241 VNHAKELFVSM 251
           V  A++L   +
Sbjct: 614 VREAQDLLSEL 624



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A TY  I+  LC +G +  A  +  +M  +           ++   C    +  A R 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              +  +G   +    N+++  +C+ G +DE   LL  +   G  PD  +YN +L G C+
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 238 TGRVNHAKELFVSMESMGC 256
             R +  +EL V M  +GC
Sbjct: 226 AKRWDDVEELMVEMVRVGC 244



 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I  LC  G    A        D      VV Y ++I G+C A    +          
Sbjct: 48  SALIRSLCAAGRTADAARALDTAGDA---AGVVAYNAMIAGYCRA---GQVAAARRLAAA 101

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             V PN  T+  I+  LC  G + +A ++LD M   G        + +L+  C  G    
Sbjct: 102 VPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 244 AKELFVSMESMGC 256
           A      + + GC
Sbjct: 162 AVRALQVLHAKGC 174


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP  V+   ++ G     K  D +  LF ++    + PD YT +I
Sbjct: 94  NDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI-DLFNKIILENIKPDGYTFNI 152

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------------- 117
           L++ FCK  ++  G  V   +++    PDVVT+ SL+   +                   
Sbjct: 153 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG 212

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +YN +I+G CK   VDKA  LF +M  KN+ PNVVTY S+I G   +   + A 
Sbjct: 213 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYAL 272

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  +M D+GV PN++T+N I+D L K  ++D+A +L+      G++P  +TY  L+DG 
Sbjct: 273 QLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGL 332

Query: 236 CLTGRVNHAKELF 248
           C  GR+  A+ +F
Sbjct: 333 CKGGRLKDARNIF 345



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 21/211 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------ 113
           G  P+  T + LI   C  G++   F+   +++   F  D V++ +LI            
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 114 ---------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                    K+ + +A+ YNT+I G+CK   V+ A +L+ +M  K + PNVVTY+++I G
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           F       +A  LF +++ + ++P+  TFN+++D  CK+ KM E  ++  +M++ G+ PD
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             TYN+L+DG+ L   VN AK +F +M   G
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG 212



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 119/217 (54%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  + K+KH +    L+  + S G+ P++ T+S LI+ F  +G++     +  +I+
Sbjct: 80  YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 139

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                         ++  KPD  T+N ++DG CK   + + K +F  M  + + P+VVTY
Sbjct: 140 --------------LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTY 185

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            S++ G+    + N AK +F  M   GV P++ ++N++++  CK  K+D+A +L + M  
Sbjct: 186 NSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHC 245

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             + P+  TYN+L+DG   +GR+++A +L   M   G
Sbjct: 246 KNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 282



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 15/197 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   +F  M++     P V ++N ++      K  +T  S+F  +   G+ PD+ +++IL
Sbjct: 165 EGKTVFAMMMK-QGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNIL 223

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FCK+ +V     +   +   C            K   P+ +TYN++IDGL K G + 
Sbjct: 224 INGFCKIKKVDKAMNLFNEM--HC------------KNIIPNVVTYNSLIDGLSKSGRIS 269

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A +L  +M D+ V PN++TY S+I      +  ++A  L  +  DQG+QP++ T+ +++
Sbjct: 270 YALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILI 329

Query: 198 DELCKNGKMDEASSLLD 214
           D LCK G++ +A ++ +
Sbjct: 330 DGLCKGGRLKDARNIFE 346


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+      P   +F I+L  L ++   +    L  R+   G  PD   ++ 
Sbjct: 24  DKASAVFQEMID-KSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNA 82

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ + K       F  L  ++++   P VVT+T+++                     K 
Sbjct: 83  LISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKG 142

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN I++GLC++  +D+AK++  +M  +   P+VVTY S I+G C  +  +EA+
Sbjct: 143 CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEAR 202

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +    M    V P+VV++  +++ LCK+G +D AS +LD M   G  PD  TY++L+DGF
Sbjct: 203 KFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGF 259

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A  L  SM  +GC
Sbjct: 260 CKGGEVERAMGLLDSMLKLGC 280



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 19/249 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++ H  P  V+  NI+ G     +  D V  L   +   G  P++YT+++++   C+  
Sbjct: 103 MVKNHCLPTVVTYTNIVDGLCKAERTRDAV-KLLDEMRDKGCSPNIYTYNVIVEGLCEER 161

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------PDAITYNTII 127
           ++     +L  +    + PDVVT+ S IK +CK                 PD ++Y T+I
Sbjct: 162 KLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVI 221

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +GLCK G +D A  +   M ++   P+VVTY+S+I GFC   +   A  L   M+  G +
Sbjct: 222 NGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 281

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+V +N ++  L + G + +A  +L  M + G  PD  +YN  +DG C   RV  AK +
Sbjct: 282 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 341

Query: 248 FVSMESMGC 256
           F  M   GC
Sbjct: 342 FDRMVERGC 350



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 35/263 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ + D M R     P + ++N+++  L + +  D    + + +   G FPD+ T++ 
Sbjct: 129 RDAVKLLDEM-RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 187

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I   CK  RV      L R+     TPDVV++T++I                     + 
Sbjct: 188 FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG 244

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY+++IDG CK G V++A  L   M     +PN+V Y S++          +A+
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 304

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN------ 229
            + +EM  +G  P+VV++N  +D LCK  ++ +A ++ D M++ G  P+A +Y+      
Sbjct: 305 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDI 364

Query: 230 ----TLLDGFCLTGRVNHAKELF 248
                LLDG C  GR + A  LF
Sbjct: 365 LLYTVLLDGLCKGGRFDEACALF 387



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 14/216 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L  L +   +D   ++F+ +      PD +T +IL+   C+  ++     +LG
Sbjct: 7   VFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG 66

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R+                  C PD   YN +I G  K     +A +   +M   +  P V
Sbjct: 67  RMKEMG--------------CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTV 112

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYT+++ G C A    +A +L  EM D+G  PN+ T+NVI++ LC+  K+DEA  +L+ 
Sbjct: 113 VTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 172

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           M   G  PD  TYN+ + G C   RV+ A++    M
Sbjct: 173 MAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 208



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 67/298 (22%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           ++ RM P  P V S+  ++  L K+   D+   +   +++ G  PD+ T+S LI+ FCK 
Sbjct: 204 FLARM-PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITY 123
           G V     +L  +L+    P++V + SL+                         PD ++Y
Sbjct: 263 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 322

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPN----------VVTYTSVIRGFCYANDWNE 173
           N  IDGLCK   V KAK +F +M ++   PN          ++ YT ++ G C    ++E
Sbjct: 323 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDE 382

Query: 174 AKRLFIEMMDQGV-QP----------------------------------NVVTFNVIMD 198
           A  LF +++D+ + +P                                  NVVT+N+++ 
Sbjct: 383 ACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVH 442

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LC + ++ +A ++L  M+  G  PD  TY TL+D  C  G+   A ELF      GC
Sbjct: 443 GLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGC 500



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +  TYN ++  L ++   DKA  +F +M DK+ +P+  T+  ++RG C +N   +A++L 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M + G  P+   +N ++    K     +A   L  M+++   P   TY  ++DG C  
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 239 GRVNHAKELFVSMESMGC 256
            R   A +L   M   GC
Sbjct: 126 ERTRDAVKLLDEMRDKGC 143



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 105/281 (37%), Gaps = 67/281 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A+ + D ML++   P  V+ +N +LG L +  H      +   +   G  PD+ +++ 
Sbjct: 266 ERAMGLLDSMLKLGCRPNMVA-YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
            I+  CK  RV     V  R++    TP+  +++ LI                       
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEAC 384

Query: 114 ---------KVCKPDA----------------------------------ITYNTIIDGL 130
                    K+C+PD                                   +T+N ++ GL
Sbjct: 385 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGL 444

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C    +  A+ + L M D+   P+ VTY +++   C       A  LF E +  G  P+V
Sbjct: 445 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDV 504

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           VT++ ++  L      +EA  L   +++    PD  T   L
Sbjct: 505 VTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 15/184 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  +L      P V  +N+ML    K +  D  L + K++       ++ T +I
Sbjct: 381 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNI 439

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  C   R+S    +L  ++   F PD VT              Y T++D +CK G  
Sbjct: 440 LVHGLCVDDRLSDAETMLLTMVDEGFIPDFVT--------------YGTLVDAMCKCGKS 485

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ELF +       P+VVTY+++I G  + N   EA  LF +++++   P+  T  ++
Sbjct: 486 AAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545

Query: 197 MDEL 200
             +L
Sbjct: 546 HRKL 549



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G + NV T+N ++ +L +  + D+AS++   MI    +PDAFT+  LL G C + ++  A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 245 KELFVSMESMGC 256
           ++L   M+ MGC
Sbjct: 62  RKLLGRMKEMGC 73


>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
 gi|223975267|gb|ACN31821.1| unknown [Zea mays]
          Length = 469

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++ C AK    +  L   K +  +G  P+L T + LIN + K+G V      L 
Sbjct: 220 VESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLK 279

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++     PDV+TFTSLI              DGLC    +D A   F +M +  V+PNV
Sbjct: 280 MVMEHGLMPDVITFTSLI--------------DGLCHTHQLDDAFNCFSEMSEWGVRPNV 325

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I G C A   ++A  L  +M   G+ P+  +FN  +   C+  K+++A  L + 
Sbjct: 326 QTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFND 385

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M ++GV PD++TYN L+   C   RV+ AKE+ ++MES+ C
Sbjct: 386 MSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISC 426



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 15/212 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++    K  +     +  K +   GL PD+ T + LI+  C   ++   F  
Sbjct: 253 PNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF-- 310

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +CF+       S   V +P+  TYN +I GLC  G V KA EL  KMK   + P
Sbjct: 311 ------NCFSE-----MSEWGV-RPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITP 358

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  ++ + I  FC      +A++LF +M   GV P+  T+N ++  LC   ++DEA  ++
Sbjct: 359 DAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 418

Query: 214 DLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHA 244
             M     +     TY  ++      GR + A
Sbjct: 419 LAMESISCIGTKQHTYWPVVGALTKMGRFSEA 450



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD  TYNT++ G+C++G VD+A  L  +M+   ++PNVVTYT ++ GFC A+   EA 
Sbjct: 6   CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 65

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +   M ++GV     T+  ++    +  + + A  +L   I+      +  Y+TLL  +
Sbjct: 66  CVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLL--Y 123

Query: 236 CLT 238
           CL+
Sbjct: 124 CLS 126



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L CL+KN      + L K+++  G      T SI+I C  K             +
Sbjct: 117 AYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVK-------------V 163

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L S    ++V    + K        Y  II    +   + KA + F +M    +  +V +
Sbjct: 164 LESSDLCELVD-DFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVES 222

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  VI  F  A +   A      M + G  PN+VTFN +++   K G + +A + L +++
Sbjct: 223 YNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVM 282

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +HG+ PD  T+ +L+DG C T +++ A   F  M   G
Sbjct: 283 EHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 320



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 56/268 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  + +    D  L L K++   G+ P++ T+++L++ FC   RV     V
Sbjct: 8   PDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCV 67

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVCKPD----AITYNTIIDGLCK 132
           L R+     +    T+ SL+                 +  + D    +I Y+T++  L K
Sbjct: 68  LERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSK 127

Query: 133 QGFVDKAKELFLKMKDKN----------VKPNVVT------------------------- 157
                +A EL  KM  +           V P  V                          
Sbjct: 128 NDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDM 187

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I+ F    D ++A + F +M+  G+  +V ++N+++D   K G+++ A   + +M 
Sbjct: 188 YIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQ 247

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + G  P+  T+NTL++G+   G V+ AK
Sbjct: 248 ESGFSPNLVTFNTLINGYLKLGNVHDAK 275



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 15/193 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+  H   P V +F  ++  L      D   + F  ++  G+ P++ T+++LI+  C
Sbjct: 277 FLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLC 336

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
             G VS    +L ++     T              PDA ++N  I   C+   ++KA++L
Sbjct: 337 SAGHVSKAIELLNKMKMDGIT--------------PDAYSFNAPILSFCRMRKIEKAQKL 382

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDELC 201
           F  M    V P+  TY ++I+  C     +EAK + + M     +     T+  ++  L 
Sbjct: 383 FNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPVVGALT 442

Query: 202 KNGKMDEASSLLD 214
           K G+  EA   ++
Sbjct: 443 KMGRFSEAGMFMN 455



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
           + G  PD +T++ L++  C+ G V     ++ ++ R+   P+VVT+T L           
Sbjct: 3   ADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTML----------- 51

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
              +DG C    V++A  +  +MK+K V     TY S++ G     +   A R+  E ++
Sbjct: 52  ---VDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIE 108

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
                + + ++ ++  L KN    EA  L   M + G    + T++ ++
Sbjct: 109 SDPTLHSIAYHTLLYCLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVI 157



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G +P+  T+N ++  +C+ G +DEA  L+  M + G+RP+  TY  L+DGFC   R
Sbjct: 1   MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 60

Query: 241 VNHAKELFVSMESMG 255
           V  A  +   M+  G
Sbjct: 61  VEEAVCVLERMKEKG 75


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 18/226 (7%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++NIM+ C+ K    +    LF+ +   GL PD  T++ +I+ + K+GR+    
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD--- 185

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
                        D V F   +K   C+PD ITYNT+I+  CK G + K  E F +MK  
Sbjct: 186 -------------DTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQS 232

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KPNVV+Y++++  FC  +   +A + +++M   G+ PN  T+  ++D  CK G + +A
Sbjct: 233 GLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDA 292

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L D M Q GV  +  TY  L+DG C   R+  A+ELF  M + G
Sbjct: 293 FRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAG 338



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +F+ M +     P   ++N M+    K    D  +  F+ + S   
Sbjct: 146 EGDIEA-----ASGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+ T++ LINCFCK G++  G      + +S   P+VV++++L+   CK         
Sbjct: 200 EPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALK 259

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P+  TY +++D  CK G +  A  L  +M    V+ NVVTYT++I G C
Sbjct: 260 FYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLC 319

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 EA+ LF +M+  GV PN+ ++  ++    K   MD A  LLD M   G++PD  
Sbjct: 320 DVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLL 379

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y T +   C   ++  AK +   M+  G
Sbjct: 380 LYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++ C  K       L  F+ +  +GL P++ ++S L++ FCK   +      
Sbjct: 201 PDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKF 260

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK----PDA----------------ITYNTIIDGLCK 132
              + R    P+  T+TSL+   CK     DA                +TY  +IDGLC 
Sbjct: 261 YVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCD 320

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A+ELF KM    V PN+ +YT++I GF  A + + A  L  EM  +G++P+++ 
Sbjct: 321 VERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLL 380

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +   +  LC   K++ A  +++ M + G++ + F Y TL+D +
Sbjct: 381 YGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAY 423



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 2/171 (1%)

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           R+    V+    L+ C   DV+  T    VC P    ++ +   L ++   ++A + F K
Sbjct: 31  RILREMVLSKAELKDCDVFDVLWSTR--NVCVPGFGVFDALFSVLIEEDMFEEALQCFSK 88

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MK   V P   +   ++  F      +  KR F +M+  G +P V T+N+++D +CK G 
Sbjct: 89  MKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGD 148

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ AS L + M   G+ PD  TYN+++DG+   GR++     F  M+SM C
Sbjct: 149 IEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 111 SLIKVCK--PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
           S +K C+  P   + N ++    + G  D  K  F  M     KP V TY  +I   C  
Sbjct: 87  SKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKE 146

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D   A  LF EM  +G+ P+ VT+N ++D   K G++D+     + M      PD  TY
Sbjct: 147 GDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           NTL++ FC  G++    E F  M+  G
Sbjct: 207 NTLINCFCKFGKLPKGLEFFREMKQSG 233



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 119/314 (37%), Gaps = 92/314 (29%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-- 91
           P V S++ ++    K       L  +  +   GL P+ +T++ L++ +CK+G +S  F  
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRL 295

Query: 92  ---------------------------------VVLGRILRSCFTPDVVTFTSLI----- 113
                                             + G+++ +   P++ ++T+LI     
Sbjct: 296 ADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVK 355

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           +  KPD + Y T I  LC    ++ AK +  +M++K +K N   
Sbjct: 356 AKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFI 415

Query: 158 YTSV-----------------------------------IRGFCYANDWNEAKRLFIEMM 182
           YT++                                   I G C     ++A   F  + 
Sbjct: 416 YTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRIS 475

Query: 183 -DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            D G+Q N   +  ++D LCK  +++ A++L + M Q G+ PD   Y +L+DG    G V
Sbjct: 476 NDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNV 535

Query: 242 NHAKELFVSMESMG 255
             A  L   M  +G
Sbjct: 536 VQALALRDKMAEIG 549



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 89/253 (35%), Gaps = 70/253 (27%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+  ++    K K+ D  L L   +   G+ PDL  +   I   C + ++    VV
Sbjct: 341 PNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVV 400

Query: 94  LGRILRSCFTPD-----------------------------------VVTFTSLIK-VCK 117
           +  +       +                                    VTF  LI  +CK
Sbjct: 401 MNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCK 460

Query: 118 ---------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                                 +A  Y  +IDGLCK+  V+ A  LF +M  K + P+  
Sbjct: 461 NKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRT 520

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            YTS+I G     +  +A  L  +M + GV+           +LC+N         + L 
Sbjct: 521 AYTSLIDGKLKQGNVVQALALRDKMAEIGVESGAR-----FGDLCQN--------TIKLS 567

Query: 217 IQHGVRPDAFTYN 229
           ++ G R     YN
Sbjct: 568 LRMGARVGVQHYN 580


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 21/234 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K +  D    L+K ++S  L  +  T+SILI+ FCK G +      
Sbjct: 356 PNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESY 415

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
            GR++       +  + SLI   CK                    P A T+ T+I G CK
Sbjct: 416 FGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCK 475

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V+KA +L+ +M +K + P+V T+T++I G C  N+  EA +LF EM+++ ++P  VT
Sbjct: 476 DLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVT 535

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +NV+++  CK   MD+A  LL+ M+ +G+ PD +TY  L+ G C TGRV+ AK+
Sbjct: 536 YNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKD 589



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 55/245 (22%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           G+  DL  H++LI+   K   +   F +L ++      PD V +TS+I            
Sbjct: 633 GINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKS 692

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY------ 158
                      C P+ +TY   ++GLCK G +D+A  LF KM   N+ PN VTY      
Sbjct: 693 GECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDS 752

Query: 159 ----------------------------TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
                                         +IRGFC      EA ++  EM + G+ P+ 
Sbjct: 753 LTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDC 812

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T++ I+ E C++G +  A  L D M++ GV PD+  +N L+ G C+ G ++ A EL   
Sbjct: 813 ITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRND 872

Query: 251 MESMG 255
           M S G
Sbjct: 873 MLSRG 877



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 23/239 (9%)

Query: 29  MHPSPPPVS--SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH    P++  +++I++    K    D   S F R+   G+   +Y ++ LIN  CK G 
Sbjct: 384 MHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGD 443

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
           +S    +  +++     P   TFT+LI   CK                    P   T+  
Sbjct: 444 LSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTA 503

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GLC    + +A +LF +M ++ +KP  VTY  +I G+C A++ ++A  L  +M+  G
Sbjct: 504 LIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNG 563

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + P+  T+  ++  LC  G++  A   +D + +  ++ +   Y+ LL G+C  GR+  A
Sbjct: 564 LVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEA 622



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N+++  L K       L + K L   GL  D+ T+  L+  FC++ +   G  ++ 
Sbjct: 253 IVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMN 312

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F P     + L+              DGL K+G +D A +L +K+      PN+
Sbjct: 313 EMVELGFVPTEAAVSGLV--------------DGLRKKGNIDSAYDLVVKLGRFGFLPNL 358

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y ++I   C   D ++A+ L+  M    +  N VT+++++D  CK G +D A S    
Sbjct: 359 FVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGR 418

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI+ G+R   + YN+L++G C  G ++ A+ L+  M + G
Sbjct: 419 MIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEG 458



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 30/259 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+     P  V+ +N+M+    K  + D    L + +   GL PD YT+  L
Sbjct: 516 EASKLFDEMVERKIKPTEVT-YNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPL 574

Query: 78  INCFCKMGRVS-------------------------HGFVVLGRILRSCFTPDVVTFTSL 112
           I+  C  GRVS                         HG+   GR+  +       +   +
Sbjct: 575 ISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEAL----SASCEMI 630

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            +    D + +  +IDG  KQ  + +   L  KM D+ ++P+ V YTS+I  +     + 
Sbjct: 631 QRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFK 690

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           ++      M+ +   PNVVT+   M+ LCK G++D A  L + M+   + P++ TY   L
Sbjct: 691 KSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFL 750

Query: 233 DGFCLTGRVNHAKELFVSM 251
           D     G +  A +L   M
Sbjct: 751 DSLTKEGNMKEATDLHHEM 769



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 110/274 (40%), Gaps = 56/274 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F  ++    K+   +    L++ +N   + P +YT + LI   C    ++    +
Sbjct: 461 PTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKL 520

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P  VT+  +I+  CK                    PD  TY  +I GLC 
Sbjct: 521 FDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCS 580

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA------------------ 174
            G V  AK+    +  KN+K N + Y++++ G+C      EA                  
Sbjct: 581 TGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVC 640

Query: 175 --------------KRLF---IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                         KRLF    +M DQG++P+ V +  ++D   K G   ++   LDLM+
Sbjct: 641 HAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMV 700

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
                P+  TY   ++G C  G ++ A  LF  M
Sbjct: 701 TEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKM 734



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 29/213 (13%)

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT----------------- 110
           FP++ T++  +N  CK+G +     +  ++L +  +P+ VT+                  
Sbjct: 705 FPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATD 764

Query: 111 ---SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
               ++K    +  TYN +I G CK G + +A ++  +M +  + P+ +TY+++I   C 
Sbjct: 765 LHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCR 824

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---- 223
           + D   A  L+  M+ +GV+P+ V FN+++   C NG +D+A  L + M+  G++P    
Sbjct: 825 SGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQIL 884

Query: 224 -----DAFTYNTLLDGFCLTGRVNHAKELFVSM 251
                D    N L+ G C+TG V+ A  L+ SM
Sbjct: 885 QLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSM 917



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 38/275 (13%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD------LY 72
           AL  F+++          +SF I++  L +NK +    SL   L   G  P       L 
Sbjct: 79  ALRFFNFLGLHKNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVFEKFLE 138

Query: 73  THS-----------ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS----LIKV-- 115
           +H             L++ + +  RV    VVL  +L +   P+V T ++    L+++  
Sbjct: 139 SHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRK 198

Query: 116 ---------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                           KPD  T + +I  LC+     +AKE  L M+      ++VTY  
Sbjct: 199 FILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNV 258

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I G C      EA  +   + ++G++ +VVT+  ++   C+  + D+   L++ M++ G
Sbjct: 259 LIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELG 318

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             P     + L+DG    G ++ A +L V +   G
Sbjct: 319 FVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFG 353



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 23/160 (14%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +++NI++    K         +   +   G+FPD  T+S +I   C+ G V     +   
Sbjct: 778 ATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDT 837

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +LR              K  +PD++ +N +I G C  G +DKA EL   M  + +KP  +
Sbjct: 838 MLR--------------KGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQI 883

Query: 157 TYTS---------VIRGFCYANDWNEAKRLFIEMMDQGVQ 187
                        ++ G C   + + A RL+  M+ + V+
Sbjct: 884 LQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVK 923


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 24/250 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
            R+ P P    S N +L  L+K    D     FK + + G+   ++T++I+I+  CK G 
Sbjct: 214 FRVFPKP---RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 270

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +     +  ++  + FTPD+VT+ SLI                       C PD ITYN 
Sbjct: 271 LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 330

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+  CK   + KA E   +MK   +KPNVVTY++ I  FC      EA + F++M    
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 390

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + PN  T+  ++D  CK G + EA  L++ ++Q G++ +  TY  LLDG C  GR+  A+
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 450

Query: 246 ELFVSMESMG 255
           E+F +M + G
Sbjct: 451 EVFRAMLNAG 460



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++NIM+  L K    +   SLF ++   G  PD+ T++ LI+   K+G +     +  
Sbjct: 255 VFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE 314

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           ++  +   PDV+T+ +LI                        KP+ +TY+T ID  CK+G
Sbjct: 315 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 374

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A + F+ M+   + PN  TYTS+I   C A +  EA +L  E++  G++ NVVT+ 
Sbjct: 375 MLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 434

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            ++D LC+ G+M EA  +   M+  GV P+  TY  L+ GF     + +AK++   M+ 
Sbjct: 435 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 493



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E +CIF+ M +     P V ++N ++ C  K +           + + GL P++ T+S 
Sbjct: 307 DECICIFEQM-KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYST 365

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP----------------- 118
            I+ FCK G +         + R   TP+  T+TSLI   CK                  
Sbjct: 366 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 425

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              + +TY  ++DGLC++G + +A+E+F  M +  V PN  TYT+++ GF  A +   AK
Sbjct: 426 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAK 485

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM ++ ++P+++ +  I+  LC   +++EA  L+  + + G+  +A  Y TL+D +
Sbjct: 486 DILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAY 545

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G+   A  L   M  +G
Sbjct: 546 FKSGQATEALTLLEEMLDLG 565



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  ML    +P    ++  ++    K K  +    + K +    + PDL  +  
Sbjct: 447 KEAEEVFRAMLNAGVAPNQ-ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 505

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   C   R+    +++G I  S    + V +T+L+                       
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                +TY  +IDGLCK G V +A   F +M +  ++PNV  YT+++ G C  N +  AK
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM+D+G+ P+ + +  ++D   K+G + EA +L D MI+ G+  D   Y  L+ G 
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G+V  A+ L   M   G
Sbjct: 686 SHSGQVQKARNLLDEMIGKG 705



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+  F  M R+  +P   + +  ++    K  +    L L + +   G+  ++ T++ 
Sbjct: 377 QEAIKFFVDMRRVALTPNEFT-YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA 435

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  C+ GR+     V   +L +   P+  T+T+L+                     K 
Sbjct: 436 LLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC 495

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD + Y TI+ GLC +  +++AK L  ++K+  +  N V YT+++  +  +    EA 
Sbjct: 496 IKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM+D G+    VT+  ++D LCK+G + EA      M + G++P+   Y  L+DG 
Sbjct: 556 TLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGL 615

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C       AK+LF  M   G
Sbjct: 616 CKNNCFEVAKKLFDEMLDKG 635



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++    K+      L+L + +   GL     T+  LI+  CK G V       GR+ 
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMS 597

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P+V  +T+L+              DGLCK    + AK+LF +M DK + P+ + Y
Sbjct: 598 EIGLQPNVAVYTALV--------------DGLCKNNCFEVAKKLFDEMLDKGMMPDKIAY 643

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T++I G     +  EA  L   M++ G++ ++  +  ++  L  +G++ +A +LLD MI 
Sbjct: 644 TALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIG 703

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GV PD   Y  L+  +   G+V+ A EL   M   G
Sbjct: 704 KGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
            + L R+L S    D++  T    VC P    ++ +   L + G +++A E FLKM+   
Sbjct: 158 LICLRRVLPSWDVFDLLWATR--NVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFR 215

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P   +  +++         + +++ F +M   G++ +V T+N+++D LCK G ++ A 
Sbjct: 216 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 275

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           SL   M + G  PD  TYN+L+DG    G ++    +F  M+   C
Sbjct: 276 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 321


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N+++  L +         + + +   G  PD  T++ L+N +CK G      V+
Sbjct: 282 PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVI 341

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++R+  +P VVT+T+LI  +CK                    P+  TY T+IDG  +
Sbjct: 342 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +++A  +  +M +    P+VVTY + I G C      EA  +  EM+++G+ P+VV+
Sbjct: 402 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 461

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I+   C+ G++D A  +   M++ GV PDA TY++L+ G C   R+  A +L   M 
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 521

Query: 253 SMG 255
            MG
Sbjct: 522 DMG 524



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I   M+R   SP  V ++  ++  + K ++ +  +  F ++   GL P+  T++ 
Sbjct: 336 HQALVIHAEMVRNGVSPS-VVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F + G ++  + +L  +  S F+P VVT+ + I                     K 
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G C++G +D+A ++  +M +K V P+ VTY+S+I+G C      EA 
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM+D G+ P+  T+  +++  C  G +++A  L D MI  G  PDA TY+ L++G 
Sbjct: 515 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 574

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L   +
Sbjct: 575 NKQARTREAKRLLFKL 590



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 131/245 (53%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYD--TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N +L  + +++     +   +++ +  + + P++YT++ILI  FC +G +  G 
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
              G + R+   P+VVT+ +LI                     K  +P+ I+YN II+GL
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G + +A E+  +M  K   P+ VTY +++ G+C   ++++A  +  EM+  GV P+V
Sbjct: 295 CREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSV 354

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+  +++ +CK   ++ A    D M   G+RP+  TY TL+DGF   G +N A  +   
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 251 MESMG 255
           M   G
Sbjct: 415 MTESG 419



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  FD M R+    P   ++  ++   ++    +    +   +  +G  P + T++ 
Sbjct: 371 NRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 429

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+  C + R+     V+  ++     PDVV+++++I                     K 
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA+TY+++I GLC+   + +A +L  +M D  + P+  TYT++I  +C   D N+A 
Sbjct: 490 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 549

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
            L  EM+ +G  P+ VT++V+++ L K  +  EA  LL  +I     P   TY+TL++  
Sbjct: 550 HLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENC 609

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G ++ A  +F SM
Sbjct: 610 SNIEFKSVVALIKGFCMKGLMHEADRVFESM 640



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  I + M     SP  V ++N  +      +  +  L + + +   GL PD+ ++S 
Sbjct: 406 NEAYRILNEMTESGFSPS-VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I+ FC+ G +   F +   ++    +PD VT++SLI+ +C+                  
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY T+I+  C +G ++KA  L  +M  K   P+ VTY+ +I G        EAK
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDE---------------LCKNGKMDEASSLLDLMIQHG 220
           RL  +++ +   P+ VT++ +++                 C  G M EA  + + M++  
Sbjct: 585 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 644

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +P    YN ++ G C  G +  A  L+  M
Sbjct: 645 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +   M+    +P  VS   I+ G   K +  D    + + +   G+ PD  T+S L
Sbjct: 442 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE-LDRAFQMKQEMVEKGVSPDAVTYSSL 500

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I   C+M R++    +   +L     PD  T+T+LI                     K  
Sbjct: 501 IQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF 560

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY---------------TSV 161
            PDA+TY+ +I+GL KQ    +AK L  K+  +   P+ VTY                ++
Sbjct: 561 LPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVAL 620

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I+GFC     +EA R+F  M+++  +P    +NVI+   C+ G + +A +L   MI  G 
Sbjct: 621 IKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF 680

Query: 222 RPDAFTYNTLLDGFCLTG 239
            P   T  TL+      G
Sbjct: 681 VPHTVTVITLIKALFKEG 698



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++  ++         +  L L   +   G  PD  T+S+LIN   K  R      
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 585

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI---IDGLCKQGFVDKAKELFLKMKDK 149
           +L +++     P  VT+ +LI+ C    I + ++   I G C +G + +A  +F  M ++
Sbjct: 586 LLFKLIYEESVPSDVTYDTLIENC--SNIEFKSVVALIKGFCMKGLMHEADRVFESMVER 643

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           N KP    Y  +I G C   +  +A  L+ EM+  G  P+ VT   ++  L K G  +E 
Sbjct: 644 NHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 703

Query: 210 SSLL 213
           S ++
Sbjct: 704 SEVI 707



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 40/178 (22%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------- 161
           V    +  ++ ++        +D+A       K     P V++Y SV             
Sbjct: 137 VYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL 196

Query: 162 ------------------------IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
                                   IRGFC   +  +    F EM   G  PNVVT+N ++
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G++DEA  LL  M   G++P+  +YN +++G C  G +  A E+   +E MG
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI---LEEMG 311



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-GKMD-EASSLLDLMIQ 218
           +++ + + N  ++A          G  P V+++N ++D + ++ G +   A  +   MI+
Sbjct: 148 MVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIR 207

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             V P+ +TYN L+ GFC  G +      F  ME  GC
Sbjct: 208 SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGC 245


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 57/291 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M++  P P  V  F+ +L  +AK   +D V+SL +++ + G+  +LYT+SI
Sbjct: 57  DDAIGLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 77  LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
            IN FC+  ++S    +LG++++                                     
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
           + PD VTFT+L+                     K C+PD +TY  +I+GLCK+G  D A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L  KM+   ++ +VV Y ++I G C     ++A  LF +M  +G++P+V T+N ++  L
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           C  G+  +AS LL  M++  + PD   +N L+D F   G++  A++L+  M
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + ++ ++  + K    D    L  +M++  +  N+ TY+  I  FC  +  + A  +
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +MM  G  P++VT N +++  C   ++ EA +L+D M++ G +PD  T+ TL+ G   
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192

Query: 238 TGRVNHAKELFVSMESMGC 256
             + + A  L   M   GC
Sbjct: 193 HNKASEAVALVERMVVKGC 211



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF  M      P++V ++ ++      N ++    L  +M + G+  N+ T+++
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  C+  ++  A ++L  M++ G  P   T N+LL+GFC   R++ A  L   M  MG
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+S+NI++  + +         L   +   G  PD+ ++S ++N +C+ G +   + ++ 
Sbjct: 689 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 748

Query: 96  RILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCKQG 134
            + R    P+   + S+I    ++CK                 PD + Y T+IDG CK+G
Sbjct: 749 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A + F +M  +++ P+V+TYT++I GFC   D  EA +LF EM  +G++P+ VTF 
Sbjct: 809 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +++  CK G M +A  + + MIQ G  P+  TY TL+DG C  G ++ A EL   M  +
Sbjct: 869 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 928

Query: 255 G 255
           G
Sbjct: 929 G 929



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            EA   F  M+R    P  V  +  ++    K          F  ++S  + PD+ T++ +
Sbjct: 777  EAEEAFSEMIRQGILPDTVV-YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 835

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
            I+ FC++G +     +   +      PD VTFT LI                       C
Sbjct: 836  ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 895

Query: 117  KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             P+ +TY T+IDGLCK+G +D A EL  +M    ++PN+ TY S++ G C + +  EA +
Sbjct: 896  SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955

Query: 177  LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            L  E    G+  + VT+  +MD  CK+G+MD+A  +L  M+  G++P   T+N L++GFC
Sbjct: 956  LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 1015

Query: 237  LTGRVNHAKELFVSMESMG 255
            L G +   ++L   M + G
Sbjct: 1016 LHGMLEDGEKLLNWMLAKG 1034



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 21/219 (9%)

Query: 58   LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
            LF  +   GL PD  T + LIN +CK G +   F V   ++++  +P+VVT+T+LI  +C
Sbjct: 851  LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 117  K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
            K                    P+  TYN+I++GLCK G +++A +L  + +   +  + V
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 970

Query: 157  TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            TYT+++  +C + + ++A+ +  EM+ +G+QP +VTFNV+M+  C +G +++   LL+ M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 217  IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  G+ P+A T+N+L+  +C+   +  A  ++  M S G
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 1069



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             +A  + ++M++   SP  V ++  ++  L K    D+   L   +   GL P+++T++ 
Sbjct: 881  KDAFRVHNHMIQAGCSPN-VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 939

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            ++N  CK G +     ++G    +    D VT+T              T++D  CK G +
Sbjct: 940  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT--------------TLMDAYCKSGEM 985

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            DKA+E+  +M  K ++P +VT+  ++ GFC      + ++L   M+ +G+ PN  TFN +
Sbjct: 986  DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 1045

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + + C    +  A+++   M   GV PD  TY  L+ G C    +  A  LF  M+  G
Sbjct: 1046 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 1104



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD-TVLSLFKRLNSTGLFPDLYTHS 75
            EA  +F+ ML  +     V S N+ L  L+K+ +   T + +F+     G+  ++ +++
Sbjct: 635 REARRVFEKMLN-YGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 693

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           I+I+  C++GR+     +L  +    +TPDV+++++++                     K
Sbjct: 694 IVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRK 753

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KP++  Y +II  LC+   + +A+E F +M  + + P+ V YT++I GFC   D   A
Sbjct: 754 GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 813

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            + F EM  + + P+V+T+  I+   C+ G M EA  L   M   G+ PD+ T+  L++G
Sbjct: 814 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 873

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +C  G +  A  +   M   GC
Sbjct: 874 YCKAGHMKDAFRVHNHMIQAGC 895



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 21/221 (9%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P + ++N ++  L K+ + +  + L     + GL  D  T++ L++ +CK G +     +
Sbjct: 932  PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 991

Query: 94   LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
            L  +L     P +VTF  L+                     K   P+A T+N+++   C 
Sbjct: 992  LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 1051

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            +  +  A  ++  M  + V P+  TY ++++G C A +  EA  LF EM  +G   +V T
Sbjct: 1052 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 1111

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            ++V++    K  K  EA  + D M + G+  D   ++   D
Sbjct: 1112 YSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 1152



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 21/203 (10%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++  ++    K+   D    + K +   GL P + T ++L+N FC  G +  G  +L  +
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 98   LRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCKQGFV 136
            L     P+  TF SL+K                 +C     PD  TY  ++ G CK   +
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             +A  LF +MK K    +V TY+ +I+GF     + EA+ +F +M  +G+  +   F+  
Sbjct: 1091 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 1150

Query: 197  MDELCKNGKMDEASSLLDLMIQH 219
             D   K  + D     +D +I++
Sbjct: 1151 SDTKYKGKRPDTIVDPIDEIIEN 1173


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 129/261 (49%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ IF  M     S P   ++NI++  L K+   +  +SL   + + G  P + T++ L
Sbjct: 109 EAMEIFREM-EEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTL 167

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------- 114
           I+ FC  GRV     +L  +     TP+ VT+T+LI+                       
Sbjct: 168 IHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGN 227

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C P+ +TY  +I GLC++G  +   E   +M      PN  TYT++I G C    + EA
Sbjct: 228 ECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEA 287

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM+  G + +VV +N ++D LCK G++D A  +  LM++ GV PD FTY +L+ G
Sbjct: 288 AVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQG 347

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  G ++ A  L   M + G
Sbjct: 348 LCDAGLLDEALGLMQEMRAKG 368



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 16/223 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S++  +  L K       + +F+ +   G  PD +T++ILIN  CK  ++  G  ++ 
Sbjct: 91  VISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMD 150

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +    F+P VVT+T              T+I G C  G VD A ++  +M+ + + PN 
Sbjct: 151 EMQARGFSPTVVTYT--------------TLIHGFCTAGRVDAAMDILDEMEHRGITPNT 196

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASSLL 213
           VTYT++I+G C   +   A  +  EM  +G +  PNVVT+  ++  LC+ G  +     L
Sbjct: 197 VTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFL 256

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D MI  G  P+  TY  L+ G C  G    A  L   M ++GC
Sbjct: 257 DEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGC 299



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 16/213 (7%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           L + +  LR +   P V ++  ++  L +   ++  +     +  +G FP+  T++ LI+
Sbjct: 217 LVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIH 276

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDK 138
             C+ G                F    V    ++ + C+ D + YN++IDGLCK G +D 
Sbjct: 277 GLCQKG---------------SFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDF 321

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+E+ + M +K V P+V TYTS+I+G C A   +EA  L  EM  +G+ PN VT+  +++
Sbjct: 322 AREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLIN 381

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
              +  + D A  L++ M  +G+ P    Y  L
Sbjct: 382 GFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%)

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
           G  V  R  R   +   +    L+     D I+Y+  I+GLCK+G + +A E+F +M++K
Sbjct: 61  GLAVRTRRRRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEK 120

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
              P+  TY  +I G C          L  EM  +G  P VVT+  ++   C  G++D A
Sbjct: 121 GSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAA 180

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +LD M   G+ P+  TY  L+ G C  G V  A  +   M+  G
Sbjct: 181 MDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRG 226


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 22/251 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R+    P V  + I++  L  +   +   S+ + +   G++P++YT++ L++ +
Sbjct: 204 MFDEM-RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGY 262

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           CK+        +   +L     PDVVTF  LI  +CK                    P+ 
Sbjct: 263 CKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNI 322

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             YN++ID  CK G V +A  LFL+++   V P+V TY+ +IRG C  +   EA  +F +
Sbjct: 323 AVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEK 382

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G+  N VT+N ++D  CK GKMD+A  +   M ++GV P+  T++TL+DG+C    
Sbjct: 383 MTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRN 442

Query: 241 VNHAKELFVSM 251
           +  A  ++  M
Sbjct: 443 LQAAMGIYSEM 453



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 131/236 (55%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K        +LF  +    + P++  ++ LI+ +CK+G VS    +
Sbjct: 285 PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMAL 344

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              + R   +PDV T++ LI+ +C                      +++TYN++IDG CK
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +DKA E+  +M +  V+PNV+T++++I G+C   +   A  ++ EM+ + + P+VVT
Sbjct: 405 EGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVT 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  ++D  CK G M EA  L   M+ +G+ P+ +T + LLDG C  G+++ A ELF
Sbjct: 465 YTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF 520



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 118/217 (54%), Gaps = 14/217 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + + N++L  L K   ++ +  +++ + S GL P + T   LI+  C+ G          
Sbjct: 147 IQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGD--------- 197

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +LR+    D +    ++    P  I Y  +I GLC    +++A+ +   M++  V PNV
Sbjct: 198 -LLRAQEMFDEMRVKGIV----PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +++ G+C   +  +A RL+ +M+ +G+ P+VVTF +++D LCK G+M  A +L   
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVN 312

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           MI+  V P+   YN+L+D +C  G V+ A  LF+ +E
Sbjct: 313 MIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELE 349



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K  +    L L++ +   GL PD+ T  ILI+  CK G +     +
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +++   TP++  + SLI   CK                    PD  TY+ +I GLC 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               ++A  +F KM  + +  N VTY S+I G C     ++A  +  +M + GV+PNV+T
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           F+ ++D  CK   +  A  +   M+   + PD  TY  ++DG C  G +  A +L+  M
Sbjct: 430 FSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDM 488



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 34/256 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++ +N ++    K       ++LF  L    + PD++T+SILI   C + R      +
Sbjct: 320 PNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
             ++ +     + VT+ SLI  C                     +P+ IT++T+IDG CK
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A  ++ +M  K++ P+VVTYT++I G C      EA +L+ +M+D G+ PN  T
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQH----------GVRP---DAFTYNTLLDGFCLTG 239
            + ++D LCK+GK+ +A  L    I+           G +P   +   Y  L+ G C  G
Sbjct: 500 ISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDG 559

Query: 240 RVNHAKELFVSMESMG 255
           + + A +LF  M   G
Sbjct: 560 QFSKAVKLFSDMRRYG 575



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 20/213 (9%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI-----LRSCFTPDVV---- 107
           S   RL S+   P++Y   I++   CKM  V     +  ++     +++C     V    
Sbjct: 103 SELSRLKSSKFTPNVYGELIIV--LCKMELVEEALSMYHKVGAALTIQACNVLLYVLVKT 160

Query: 108 -TFTSLIKVCK--------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
             F  L ++ +        P  IT+ T+IDG C+QG + +A+E+F +M+ K + P V+ Y
Sbjct: 161 GRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVY 220

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T +IRG C  N   EA+ +   M + GV PNV T+N +MD  CK     +A  L   M+ 
Sbjct: 221 TILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLG 280

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            G+ PD  T+  L+DG C  G +  A+ LFV+M
Sbjct: 281 EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNM 313



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ I+  M+ +    P V ++  M+    K       L L+  +   G+ P+ YT S L+
Sbjct: 446 AMGIYSEMV-IKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLL 504

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           +  CK G++S    +    +    TP         K    + + Y  +I GLC+ G   K
Sbjct: 505 DGLCKDGKISDALELFTEKIEF-QTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSK 563

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A +LF  M+   ++P+ V Y  ++RG            L  +M+  GV PN     ++ +
Sbjct: 564 AVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI--LMMLHADMLKFGVIPNSAVHVILCE 621

Query: 199 ELCKNGKMDEASS 211
              ++G +  A +
Sbjct: 622 CYQESGFLKSAQN 634


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N+++  L +         + + +   G  PD  T++ L+N +CK G      V+
Sbjct: 78  PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVI 137

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++R+  +P VVT+T+LI  +CK                    P+  TY T+IDG  +
Sbjct: 138 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +++A  +  +M +    P+VVTY + I G C      EA  +  EM+++G+ P+VV+
Sbjct: 198 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I+   C+ G++D A  +   M++ GV PDA TY++L+ G C   R+  A +L   M 
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 317

Query: 253 SMG 255
            MG
Sbjct: 318 DMG 320



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I   M+R   SP  V ++  ++  + K ++ +  +  F ++   GL P+  T++ 
Sbjct: 132 HQALVIHAEMVRNGVSPS-VVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ F + G ++  + +L  +  S F+P VVT+ + I                     K 
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G C++G +D+A ++  +M +K V P+ VTY+S+I+G C      EA 
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM+D G+ P+  T+  +++  C  G +++A  L D MI  G  PDA TY+ L++G 
Sbjct: 311 DLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 370

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L   +
Sbjct: 371 NKQARTREAKRLLFKL 386



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    L K ++S G+ P+L +++++IN  C+ G +   + +
Sbjct: 43  PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 102

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  +    FTPD VT+ +L+   CK                    P  +TY  +I+ +CK
Sbjct: 103 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A E F +M+ + ++PN  TYT++I GF      NEA R+  EM + G  P+VVT
Sbjct: 163 ARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVT 222

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N  +   C   +M+EA  ++  M++ G+ PD  +Y+T++ GFC  G ++ A ++   M 
Sbjct: 223 YNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMV 282

Query: 253 SMG 255
             G
Sbjct: 283 EKG 285



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           P++YT++ILI  FC +G +  G    G + R+   P+VVT+ +LI               
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K  +P+ I+YN II+GLC++G + +A E+  +M  K   P+ VTY +++ G+C 
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             ++++A  +  EM+  GV P+VVT+  +++ +CK   ++ A    D M   G+RP+  T
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y TL+DGF   G +N A  +   M   G
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESG 215



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  FD M R+    P   ++  ++   ++    +    +   +  +G  P + T++ 
Sbjct: 167 NRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+  C + R+     V+  ++     PDVV+++++I                     K 
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA+TY+++I GLC+   + +A +L  +M D  + P+  TYT++I  +C   D N+A 
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 345

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
            L  EM+ +G  P+ VT++V+++ L K  +  EA  LL  +I     P   TY+TL++  
Sbjct: 346 HLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENC 405

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G ++ A  +F SM
Sbjct: 406 SNIEFKSVVALIKGFCMKGLMHEADRVFESM 436



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  I + M     SP  V ++N  +      +  +  L + + +   GL PD+ ++S 
Sbjct: 202 NEAYRILNEMTESGFSPS-VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I+ FC+ G +   F +   ++    +PD VT++SLI+ +C+                  
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY T+I+  C +G ++KA  L  +M  K   P+ VTY+ +I G        EAK
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 380

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDE---------------LCKNGKMDEASSLLDLMIQHG 220
           RL  +++ +   P+ VT++ +++                 C  G M EA  + + M++  
Sbjct: 381 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 440

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +P    YN ++ G C  G +  A  L+  M
Sbjct: 441 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +   M+    +P  VS   I+ G   K +  D    + + +   G+ PD  T+S L
Sbjct: 238 EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE-LDRAFQMKQEMVEKGVSPDAVTYSSL 296

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I   C+M R++    +   +L     PD  T+T+LI                     K  
Sbjct: 297 IQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGF 356

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY---------------TSV 161
            PDA+TY+ +I+GL KQ    +AK L  K+  +   P+ VTY                ++
Sbjct: 357 LPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVAL 416

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I+GFC     +EA R+F  M+++  +P    +NVI+   C+ G + +A +L   MI  G 
Sbjct: 417 IKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF 476

Query: 222 RPDAFTYNTLLDGFCLTG 239
            P   T  TL+      G
Sbjct: 477 VPHTVTVITLIKALFKEG 494



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 60/110 (54%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V PNV TY  +IRGFC   +  +    F EM   G  PNVVT+N ++D  CK G+
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +DEA  LL  M   G++P+  +YN +++G C  G +  A E+   M   G
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG 110



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++  ++         +  L L   +   G  PD  T+S+LIN   K  R      
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI---IDGLCKQGFVDKAKELFLKMKDK 149
           +L +++     P  VT+ +LI+ C    I + ++   I G C +G + +A  +F  M ++
Sbjct: 382 LLFKLIYEESVPSDVTYDTLIENCS--NIEFKSVVALIKGFCMKGLMHEADRVFESMVER 439

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           N KP    Y  +I G C   +  +A  L+ EM+  G  P+ VT   ++  L K G  +E 
Sbjct: 440 NHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 499

Query: 210 SSLL 213
           S ++
Sbjct: 500 SEVI 503



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           MI+  V P+ +TYN L+ GFC  G +      F  ME  GC
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGC 41


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M     SP  V S++I++  L + +  D    L   +   G  P++ T+  
Sbjct: 69  EEARSVFRGMAAQGCSPN-VFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGS 127

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++  CKMG++     +  R++     PD V +  LI                     K 
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P   TYN+++ G  ++G   + + LF  M  +   PN+ T+ +++ GFC   D  EA 
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RLF+EM   G  P+VV++N +M  +C  GK  EA  LL  MI+ GV PD  +YN L+DG+
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGY 307

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G ++HA +LF  +   G
Sbjct: 308 SKSGALDHAIKLFYEIPKSG 327



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  +L  L + + ++   S+F+ + + G  P+++++SILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     P+VVT+ SL+                     + C PD + YN +IDG  K
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  LF +M +K   P V TY S++ GF    ++   + LF +M+ QG  PN+ T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK G M EA  L   M   G  PD  +YNTL+ G C  G+ + A+ L   M 
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMI 289

Query: 253 SMG 255
             G
Sbjct: 290 RSG 292



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +L  L K       + LF R+   G  PD   +++LI+ F K G +   + +
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P V T+ SL+                     + C P+  T+N ++DG CK
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  LFL+M+     P+VV+Y +++RG C     +EA+RL  EM+  GV P++V+
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D   K+G +D A  L   + + G+ PDAF+Y+T++D  C  G+V  A  +F  M 
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 253 SMG 255
           + G
Sbjct: 360 ANG 362



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N +L  LAK+   D V   +  +   G  P+ YT+  L+   C+  R      V   +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                +P+V +++ LI  +C+                    P+ +TY +++ GLCK G +
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +LF +M  +   P+ V Y  +I GF    D  EA RLF EM+++G  P V T+N +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +    + G+     SL   M++ G  P+ FT+N LLDGFC  G +  A  LF+ M S+GC
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F+ ML      P V ++N +L   ++   +  V SLFK +   G  P+++T + 
Sbjct: 174 GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 77  LINCFCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           L++ FCKMG +  +H   +  R L                 C PD ++YNT++ G+C +G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLG----------------CPPDVVSYNTLMRGMCSKG 276

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +A+ L  +M    V P++V+Y  +I G+  +   + A +LF E+   G++P+  +++
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+D LC+ GK+  A  +   MI +G  PDA     L+ G C   R+  + ELF +M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 255 GC 256
            C
Sbjct: 397 EC 398



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 75/136 (55%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ++YN +++ L K G  D     +  M      PN  TY  ++R  C A  + EA+ +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  QG  PNV ++++++  LC+  K+DEA+ LL+ MI  G +P+  TY +LL G C  G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 241 VNHAKELFVSMESMGC 256
           +  A +LF  M   GC
Sbjct: 138 LKEAVDLFSRMVYRGC 153



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 16/208 (7%)

Query: 27  LRMHPSPPPVSSFN-IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +R    PP V S+N +M G  +K K ++    L + +  +G+ PD+ +++ILI+ + K G
Sbjct: 253 MRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ-RLLREMIRSGVGPDIVSYNILIDGYSKSG 311

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            + H   +   I +S                +PDA +Y+TIID LC+ G V  A  +F  
Sbjct: 312 ALDHAIKLFYEIPKSGL--------------EPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M      P+      ++ G C      E+  LF  M+     P +  +N++M +LCK  +
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            D+   +   + + G  PD      +L+
Sbjct: 418 SDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 15/195 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+EA  +   M+R    P  VS +NI++   +K+   D  + LF  +  +GL PD +++S
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVS-YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +I+C C+ G+V   FVV           D++   S      PDA     ++ GLC+   
Sbjct: 337 TIIDCLCRAGKVGAAFVVF---------KDMIANGS-----APDAAVVIPLVIGLCRGER 382

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + ++ ELF  M      P +  Y  ++   C A   ++   +F E+ ++G  P+V    V
Sbjct: 383 LTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKV 442

Query: 196 IMDELCKNGKMDEAS 210
           I++ L ++   + A 
Sbjct: 443 ILETLRRSDDKEAAE 457


>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 653

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   IFD  +    + P  + + +++  L   + +       K++   GL   +YT++ +
Sbjct: 367 ETCGIFDCFVS-RGAKPGFNGYLVLVQALLNAQRFSAGDRYLKQMGGDGLLSSVYTYNAV 425

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KV-----------C 116
           I+C CK  R  H  + L  +     +P+++TF + +          KV           C
Sbjct: 426 IDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGC 485

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD IT++ II+ LC+   +  A + F +M +  +KPN +TY  +IR  C   D   + +
Sbjct: 486 NPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVK 545

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M + G+ PN+  +N I+   CK  K+ +A  LL  M++ G++PD FTY+TL+    
Sbjct: 546 LFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALS 605

Query: 237 LTGRVNHAKELFVSMESMGC 256
            +GR + A+E+F SME  GC
Sbjct: 606 ESGRESEAREMFSSMERHGC 625



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 21/213 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++ CL K +  +        +   G+ P+L T +  ++ +   G V     V+ 
Sbjct: 419 VYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVE 478

Query: 96  RILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCKQG 134
           ++L     PDV+TF+ +I  +C                    KP+ ITYN +I   C  G
Sbjct: 479 KLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTG 538

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              ++ +LF  MK+  + PN+  Y ++I+ FC      +A+ L   M+  G++P+  T++
Sbjct: 539 DTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYS 598

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            ++  L ++G+  EA  +   M +HG  PD++T
Sbjct: 599 TLIKALSESGRESEAREMFSSMERHGCVPDSYT 631



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           GR+  + +  DV    S + + KP    YN +ID L K   ++ A   F +M+  + KP+
Sbjct: 150 GRLGLAKYCNDVFAQISFLGM-KPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPD 208

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
             TY  +I G C     +EA RL  +M  +G +PNV T+ +++D     G+++EA   L+
Sbjct: 209 RFTYNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLE 268

Query: 215 LMIQHGVRPDAFTYNTLLDG 234
           +M    + P+  T  TL+ G
Sbjct: 269 MMQVRKLNPNEATIRTLVHG 288



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I    + G      ++F ++    +KP+   Y +VI     +N  N A   F +M    
Sbjct: 145 LIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDD 204

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            +P+  T+N+++  +CK G +DEA  L+  M + G RP+ FTY  L+DGF + GR+  A
Sbjct: 205 CKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEA 263



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 22/200 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN  L   +       V  + ++L   G  PD+ T S++INC C+   +   F  
Sbjct: 452 PNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDC 511

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
              +L     P+ +T+  LI+                        P+   YN II   CK
Sbjct: 512 FKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCK 571

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA+EL   M    +KP+  TY+++I+    +   +EA+ +F  M   G  P+  T
Sbjct: 572 MKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDSYT 631

Query: 193 FNVIMD-ELCKNGKMDEASS 211
             ++ + +L ++G   E  S
Sbjct: 632 KRLVEELDLRQSGLSRETVS 651



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 105/280 (37%), Gaps = 60/280 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   +     F+++ S    PD +T++ILI+  CK G V     +
Sbjct: 172 PSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRL 231

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           + ++ R    P+V T+T LI                     +   P+  T  T++ G+ +
Sbjct: 232 VKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNEATIRTLVHGIFR 291

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPNV 190
                +A E+ L   +KN     V Y +V+  +C +N+    E      +  ++G  P+ 
Sbjct: 292 CLPPCEAFEVLLGFMEKNSILQRVAYDTVL--YCLSNNSMAKETALFLRKTGERGYIPDS 349

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP--------------------------- 223
            TFN  M+ L K   + E   + D  +  G +P                           
Sbjct: 350 STFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNAQRFSAGDRYLKQ 409

Query: 224 --------DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                     +TYN ++D  C   R  HA      M+  G
Sbjct: 410 MGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRG 449



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 56/286 (19%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF----- 81
           +R     P   ++NI++  + K    D  + L K++   G  P+++T++ILI+ F     
Sbjct: 200 MRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGR 259

Query: 82  ------------------------------------CKMGRVSHGFVVLGRILRS----- 100
                                               C+   V  GF+    IL+      
Sbjct: 260 IEEALKQLEMMQVRKLNPNEATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDT 319

Query: 101 ---CFTPDVVTFTSLIKVCK-------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
              C + + +   + + + K       PD+ T+N  ++ L K   + +   +F     + 
Sbjct: 320 VLYCLSNNSMAKETALFLRKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRG 379

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            KP    Y  +++    A  ++   R   +M   G+  +V T+N ++D LCK  + + A+
Sbjct: 380 AKPGFNGYLVLVQALLNAQRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAA 439

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L  M   G+ P+  T+NT L G+   G V     +   +   GC
Sbjct: 440 MFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGC 485



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           Y ND      +F ++   G++P+   +N ++D L K+  ++ A      M     +PD F
Sbjct: 157 YCND------VFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRF 210

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYN L+ G C  G V+ A  L   ME  G
Sbjct: 211 TYNILIHGVCKKGVVDEAIRLVKQMEREG 239


>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
 gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 121/241 (50%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S FN +L  L      D VL L+  L+   L P+ +T SI++ C CK         VL 
Sbjct: 141 ISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVLD 200

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           ++++  F P+V T T LI                       CKP+  TYN ++ G+C  G
Sbjct: 201 QMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVG 260

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A EL   +K   V+P++ TYT+++ GFC     +EA  L  E M+ G+ PNVVTFN
Sbjct: 261 RIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFN 320

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D   K G+  +   +L LM Q    PD  +Y+TLL G  L G+V     +F  ME  
Sbjct: 321 TLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGS 380

Query: 255 G 255
           G
Sbjct: 381 G 381



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 27/256 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M R+    P + ++N +L  +      D    L + +  T + PD+YT++ +++ F
Sbjct: 233 VFEVMDRIG-CKPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGF 291

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK+GR      +L   +     P+VVTF +L+                     + C PD 
Sbjct: 292 CKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDY 351

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNE-AK 175
           I+Y+T++ GL   G V     +F +M+   ++ +     S++RG C      ND  E A 
Sbjct: 352 ISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAY 411

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M  +G      T+ +++  L    K+D+A   L  M++ G  P   T N ++   
Sbjct: 412 EVFEKMKKRGFVIEQSTYALVIQALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQAL 471

Query: 236 CLTGRVNHAKELFVSM 251
           C+ G+V+ A  + V M
Sbjct: 472 CVGGKVDKAFYVLVLM 487



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 121/265 (45%), Gaps = 30/265 (11%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA  + D M++   +P  V++  I++    K         +F+ ++  G  P++ T++
Sbjct: 192 PGEAKRVLDQMMQKGFNPN-VATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYN 250

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            L+   C +GR+   F ++  I ++   PD+ T+T+++   CK                 
Sbjct: 251 CLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEM 310

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +T+NT++DG  K+G   K   +   MK +   P+ ++Y++++ G          
Sbjct: 311 GLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAG 370

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCK-----NGKMDEASSLLDLMIQHGVRPDAFTYN 229
            R+F EM   G++ +    N ++  LC+     N  ++ A  + + M + G   +  TY 
Sbjct: 371 LRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYA 430

Query: 230 TLLDGFCLTGRVNHAKELFVSMESM 254
            ++    +  +V+ A   F+++  M
Sbjct: 431 LVIQALWVAKKVDDA---FINLHQM 452



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%)

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+  +  V+     AN+ +   +L+  +    ++PN  TF++++   CK     EA  +L
Sbjct: 140 NISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL 199

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D M+Q G  P+  T   L++ FC  G++ +  ++F  M+ +GC
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGC 242


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 56/277 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++  ++  LAKNK     ++L +++ + G  P + T++ L+N  CKMGR+     +L 
Sbjct: 165 IHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 224

Query: 96  RILRSCFTPDVVTF-----------------------------------TSLIKV----- 115
           +I+ +  TPDVVT+                                   T+LI+      
Sbjct: 225 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAG 284

Query: 116 ----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                           C PD +T +T+IDGLCK G +  A  +F  M+ + + PN V Y+
Sbjct: 285 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 344

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G C A   + A  +  +M      P+ +T+N+++D LCK+G ++ A +  D M++ 
Sbjct: 345 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA 404

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G +PD +TYN L+ GFC  G  + A  +F  M S  C
Sbjct: 405 GCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHC 441



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 21/220 (9%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--- 113
           S++K + S G  PD+ T S +I+  CK GR+     +   +      P+ V +++LI   
Sbjct: 291 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 114 ------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                               C PD ITYN +IDGLCK G V+ A+  F +M +   KP+V
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDV 410

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++ GFC A + + A  +F +M      PNVVT+  ++  LCK  ++ +AS     
Sbjct: 411 YTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQH 470

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G  PD+F Y++L+DG C +G++     LF  ME  G
Sbjct: 471 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG 510



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 14/240 (5%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA  +   M   +   P + + N++L  L K+      +  F+   + G   D++T++
Sbjct: 110 PEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYT 169

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +++   K  ++     ++ +I  +  TP + T              YN +++GLCK G 
Sbjct: 170 AIVDWLAKNKKIQDAVALMEKITANGCTPTIAT--------------YNALLNGLCKMGR 215

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A +L  K+ D    P+VVTYTS+I G        EA +LF EM  +G+  + V +  
Sbjct: 216 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTA 275

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  L + GK+ +ASS+   M   G  PD  T +T++DG C  GR+  A  +F SME+ G
Sbjct: 276 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 335



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K K       LFK +   GL  D   ++ LI    + G++     V
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSV 292

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +      PDVVT +++I  +CK                    P+ + Y+ +I GLCK
Sbjct: 293 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 352

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A E+  +MK     P+ +TY  +I G C + D   A+  F EM++ G +P+V T
Sbjct: 353 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 412

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK G  D A  + D M      P+  TY TL+ G C   ++  A   F  M+
Sbjct: 413 YNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK 472

Query: 253 SMGC 256
             GC
Sbjct: 473 ERGC 476



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + + M+  L K       + +FK + + GL P+   +S LI+  CK  ++     +
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++ ++  TPD +T+  LI                       CKPD  TYN ++ G CK
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A  +F  M   +  PNVVTY ++I G C      +A   F  M ++G  P+   
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK+GK++    L D M + GV  ++ T   L+   C   RV+ A  LF ++ 
Sbjct: 483 YSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIR 541

Query: 253 SMG 255
             G
Sbjct: 542 KEG 544



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 136 VDKAKELF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            D A ELF  L       + +V T  +++  F       EA  L    +     P+V T+
Sbjct: 38  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           NV++   C   + +EA +++  M + +GV P   T+N +L G C +G+V  A + F +  
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTT 157

Query: 253 SMGC 256
           + GC
Sbjct: 158 TNGC 161


>gi|357499997|ref|XP_003620287.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357500057|ref|XP_003620317.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495302|gb|AES76505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495332|gb|AES76535.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 291

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 21/235 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ +L      P +  F  +LG L K  HY TV+SL +++   G   +L T SILIN F 
Sbjct: 35  FNRLLHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFS 94

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAI 121
           ++G+    F VL +I +  + PD +T TSLIK +C                    + + +
Sbjct: 95  QLGQNPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHV 154

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +Y T+I+GLCK G    A +L  ++  K V+P+VV YT +I   C     NEA  L+ EM
Sbjct: 155 SYGTLINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEM 214

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           + +G+ P+VVT++ ++   C  GK++++  L   MI   + P+ +T+N L+D F 
Sbjct: 215 VSKGISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFNILIDAFV 269


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ +++  L  ++     L+L K +  TG+ P+++T+++LI+  C   +      +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           LG++L     P+V+T+ +LI   CK                    P+  TYN +I G CK
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA  +  KM ++ V P+VVTY S+I G C + +++ A RL   M D+G+ P+  T
Sbjct: 441 SN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK+ +++EA  L D + Q GV P+   Y  L+DG+C  G+V+ A  +   M 
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559

Query: 253 SMGC 256
           S  C
Sbjct: 560 SKNC 563



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 21/239 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +  +N +L  LA+    D +  ++  +    + P++YT++ ++N +CK+G V      + 
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           +I+ +   PD  T+TSLI                     K C+ + + Y  +I GLC   
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A +LF+KMKD    P V TYT +I+  C +   +EA  L  EM + G++PN+ T+ 
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           V++D LC   K ++A  LL  M++ G+ P+  TYN L++G+C  G +  A ++   MES
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 20/242 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ +++  L     ++    L  ++   GL P++ T++ LIN +CK G +     V
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK-------------------PDAITYNTIIDGLCKQ 133
           +  +     +P+  T+  LIK  CK                   PD +TYN++IDG C+ 
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  D A  L   M D+ + P+  TYTS+I   C +    EA  LF  +  +GV PNVV +
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D  CK GK+DEA  +L+ M+     P++ T+N L+ G C  G++  A  L   M  
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595

Query: 254 MG 255
           +G
Sbjct: 596 IG 597



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    ++ ++D+   L   +N  GL PD +T++ +I+  CK  RV     +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +    P+VV +T+LI              DG CK G VD+A  +  KM  KN  P
Sbjct: 520 FDSLEQKGVNPNVVMYTALI--------------DGYCKAGKVDEAHLMLEKMLSKNCLP 565

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +T+ ++I G C      EA  L  +M+  G+QP V T  +++  L K+G  D A S  
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G +PDA TY T +  +C  GR+  A+++   M   G
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 33/254 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + + ML  +  P  ++ FN ++  L  +        L +++   GL P + T +I
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLT-FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   K G   H +    ++L S                KPDA TY T I   C++G +
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSG--------------TKPDAHTYTTFIQTYCREGRL 653

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+++  KM++  V P++ TY+S+I+G+      N A  +   M D G +P+  TF  +
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713

Query: 197 MD---------------ELCKNGKM---DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +                ELC    M   D    LL+ M++H V P+A +Y  L+ G C  
Sbjct: 714 IKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEV 773

Query: 239 GRVNHAKELFVSME 252
           G +  A+++F  M+
Sbjct: 774 GNLRVAEKVFDHMQ 787



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 75/298 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS+  I++  L K+  +D   S F+++ S+G  PD +T++  I  +C+ GR+     +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           + ++  +  +PD+ T++SLIK                      C+P   T+ ++I  L +
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719

Query: 133 QGF------------------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +                   D   EL  KM + +V PN  +Y  +I G C   +   A
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779

Query: 175 KRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI---------------- 217
           +++F  M  ++G+ P+ + FN ++   CK  K +EA+ ++D MI                
Sbjct: 780 EKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLIC 839

Query: 218 -------------------QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                              Q G   D   +  ++DG    G V    ELF  ME  GC
Sbjct: 840 GLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGC 897



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 75/134 (55%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YNT+++ L + G VD+ K+++++M +  V PN+ TY  ++ G+C   +  EA +   +++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           + G+ P+  T+  ++   C+   +D A  + + M   G R +   Y  L+ G C+  R++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 243 HAKELFVSMESMGC 256
            A +LFV M+   C
Sbjct: 306 EAMDLFVKMKDDEC 319



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD+M R     P    FN +L C  K K ++    +   +   G  P L +  +LI   
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G    G  V   +L+  +                D + +  IIDG+ KQG V+   E
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYY--------------EDELAWKIIIDGVGKQGLVEAFYE 887

Query: 142 LFLKMKDKNVKPNVVTYTSVIRG 164
           LF  M+    K +  TY+ +I G
Sbjct: 888 LFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 75/252 (29%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--- 114
           +  ++   G+ PDL+T+S LI  +  +G+ +  F VL R+  +   P   TF SLIK   
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718

Query: 115 -------------VCK-----------------------PDAITYNTIIDGLCKQGFVDK 138
                        +C                        P+A +Y  +I G+C+ G +  
Sbjct: 719 EMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRV 778

Query: 139 AKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV------- 190
           A+++F  M +++ + P+ + + +++   C     NEA ++  +M+  G  P +       
Sbjct: 779 AEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLI 838

Query: 191 ----------------------------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
                                       + + +I+D + K G ++    L ++M ++G +
Sbjct: 839 CGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCK 898

Query: 223 PDAFTYNTLLDG 234
             + TY+ L++G
Sbjct: 899 FSSQTYSLLIEG 910


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 21/238 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K     +       + S G+ P+++ ++ LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              I +    PDV T++ LIK +C                     P+A+TYNT+IDG CK
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++KA E+  +M +K ++PN++T++++I G+C A     A  L+ EM+ +G+ P+VV 
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +  ++D   K+G   EA  L   M + G+ P+ FT + L+DG C  GR++ A +LF++
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M+      P V  + I++  L          S+F+ + ++G+ P+LYT++ +
Sbjct: 211 KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +CK+  V     +   +L     P+VVTF  LI  +CK                   
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+   YN +IDG CK G + +A  L  +++   + P+V TY+ +I+G C  +   EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  +G  PN VT+N ++D  CK G M++A  +   M + G+ P+  T++TL+DG+C
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 237 LTGRVNHAKELFVSM 251
             G++  A  L+  M
Sbjct: 450 KAGKMEAAMGLYTEM 464



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N++L  L K   +DT+  ++  + + G  P++ T+  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P VV +T LI+ +C                     P+  TYNT++DG CK
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA EL+ +M    + PNVVT+  +I G C  ++   A++  I+M   GV PN+  
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK G + EA SL   + +H + PD FTY+ L+ G C   R+  A  L   M+
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 253 SMG 255
             G
Sbjct: 396 KKG 398



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M R     P + ++N M+    K  H    L L++ +   GL P++ T  I
Sbjct: 245 SEAESMFRTM-RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK   +      L  +      P++  +  LI   CK                  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+ +I GLC    +++A  L  +MK K   PN VTY ++I G+C   +  +A 
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M ++G++PN++TF+ ++D  CK GKM+ A  L   M+  G+ PD   Y  L+DG 
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G    A  L   M+  G
Sbjct: 484 FKDGNTKEAFRLHKEMQEAG 503



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 20/220 (9%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI-----LRSC-FTPDVV 107
           +V ++  RL S+   P+++   +LI  F +MG V     V  ++     +++C    D +
Sbjct: 111 SVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGL 168

Query: 108 T----FTSLIKV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                F ++ KV          P+ +TY T+IDG C+QG   KA  LF +M +K + P V
Sbjct: 169 VKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTV 228

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V YT +IRG C  +  +EA+ +F  M + G+ PN+ T+N +MD  CK   + +A  L   
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+  G+ P+  T+  L+DG C T  +  A++  + M S G
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 69/270 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++    K  +    LSL   +    + PD++T+SILI   C + R+     +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KVC--------KPDAITYNTIIDGLCK 132
           L  + +  F P+ VT+ +LI             +VC        +P+ IT++T+IDG CK
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  L+ +M  K + P+VV YT++I G     +  EA RL  EM + G+ PNV T
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 193 FNVIMDELCKNGKMDEASSL----------------LD------------LMIQ------ 218
            + ++D LCK+G++ +A  L                LD             +IQ      
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDG 570

Query: 219 --------------HGVRPDAFTYNTLLDG 234
                          G+RPD FT   ++ G
Sbjct: 571 RIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K+ +      L K +   GL P+++T S LI+  CK GR+S    +
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 94  LGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               L    T    + T+ +   +C P+ + Y  +I GLC  G + KA + F  M+   +
Sbjct: 531 F---LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           +P+V T   +I+G   A    +   L  +++  G+ PN   + V+     ++G +  A
Sbjct: 588 RPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N +L  L   K +  V  L + +   G  P++ T + LI   C+ G       V
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQV 282

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L +++                 C PD   Y T++DG+CK+G ++ A E+  +M    +KP
Sbjct: 283 LAQMVD--------------HGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKP 328

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV Y +V++G C A  W +A+ L  EM D     + VTFN+++D  C+NG +     LL
Sbjct: 329 NVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELL 388

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M++HG  PD  TY T+++GFC  G ++ A  L  SM + GC
Sbjct: 389 EQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGC 431



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P +  +  +L  + K  H +    +  R+ S GL P++  ++ ++   C   R   
Sbjct: 289 HGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQ 348

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIID 128
              +L  +  +    D VTF  L+                       C PD ITY T+I+
Sbjct: 349 AEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVIN 408

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+G +D+A  L   M     +PN ++YT V++G C A  W +A+ L  +M++QG  P
Sbjct: 409 GFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSP 468

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N VTFN +++ LCK G +++A  LL  M+ +G  PD  +Y+T++DG    G+ + A EL 
Sbjct: 469 NPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELL 528

Query: 249 VSMESMG 255
             M + G
Sbjct: 529 NVMVNKG 535



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N     V+ L +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A   +EA  L   M+++G+ PN + ++ I
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 546

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L K G+++    + D +    +R DA  YN ++   C  G  + A E    M S GC
Sbjct: 547 ASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGC 606



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K + + G  P+  +++I++   
Sbjct: 387 LLEQMLE-HGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGL 445

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C   R      ++ +++    +P+ VTF ++I                       C PD 
Sbjct: 446 CSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDL 505

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  D+A EL   M +K + PN + Y+S+          N   ++F  
Sbjct: 506 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDN 565

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  ++ + V +N ++  LCK G  D A   L  M+  G  P+  TY  L+ G    G 
Sbjct: 566 IQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGF 625

Query: 241 VNHAKELFVSMESMG 255
           V  A+E+   + S G
Sbjct: 626 VKEAQEMLTELCSKG 640



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 27/227 (11%)

Query: 56  LSLFKRLN-STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR--------------- 99
           L+  +RL  S  + P+ YT+  ++   C  GR++    VL  + R               
Sbjct: 99  LASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILE 158

Query: 100 -SCFTPDVVTFTSLIKV--------CKPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDK 149
            +C       F S ++V        C  D    N +++ +C Q G VD+A  L   +   
Sbjct: 159 AACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTS 218

Query: 150 -NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
               P+VV+Y +V++G C A  W   + L  EM+  G  PNVVTFN ++  LC+NG  + 
Sbjct: 219 FGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFER 278

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              +L  M+ HG  PD   Y T+LDG C  G +  A E+   M S G
Sbjct: 279 VHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYG 325



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 18  EALCIFDYMLRMHPSP-PPVSSFNIMLGC-LAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +AL + D M R   +P PP+    +   C       + + + + + L+  G   D+   +
Sbjct: 133 DALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCN 192

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++N  C  G      + L R L + F             C PD ++YN ++ GLC    
Sbjct: 193 LVLNAVCDQGGSVDEALRLLRDLPTSFG------------CDPDVVSYNAVLKGLCMAKR 240

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             + ++L  +M      PNVVT+ ++I   C    +    ++  +M+D G  P++  +  
Sbjct: 241 WGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYAT 300

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++D +CK G ++ A  +LD M  +G++P+   YNT+L G C   R   A+EL   M
Sbjct: 301 VLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEM 356



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC---YANDWNEA 174
           P+A TY  ++  LC +G +  A  +  +M+ +   P    Y  ++   C       +  A
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASSLL-DLMIQHGVRPDAFTYNTLL 232
            R+  ++  +G   +V   N++++ +C + G +DEA  LL DL    G  PD  +YN +L
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL 232

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C+  R    ++L   M  +GC
Sbjct: 233 KGLCMAKRWGRVQDLMEEMVRVGC 256



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A     A+RL   +    V PN  T+  ++  LC  G++ +A S+LD M 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASV---PVPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 218 QHGVRPDAFTYNTLLDGFC 236
           + G  P    Y+ +L+  C
Sbjct: 143 RRGCAPIPPMYHVILEAAC 161


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 56/277 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++  ++  LAKNK     ++L +++ + G  P + T++ L+N  CKMGR+     +L 
Sbjct: 34  IHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 93

Query: 96  RILRSCFTPDVVTF-----------------------------------TSLIKV----- 115
           +I+ +  TPDVVT+                                   T+LI+      
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 116 ----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                           C PD +T +T+IDGLCK G +  A  +F  M+ + + PN V Y+
Sbjct: 154 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 213

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G C A   + A  +  +M      P+ +T+N+++D LCK+G +  A +  D M++ 
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEA 273

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G +PD +TYN L+ GFC  G  + A  +F  M S  C
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRC 310



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--- 113
           S++K + S G  PD+ T S +I+  CK GR+     +   +      P+ V +++LI   
Sbjct: 160 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 219

Query: 114 ------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                               C PD ITYN +IDGLCK G V  A+  F +M +   KP+V
Sbjct: 220 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDV 279

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I GFC A + + A  +F +M      PNVVT+  ++  LCK  ++ +AS     
Sbjct: 280 YTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQH 339

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G  PD+F Y++L+DG C +G++     LF  ME  G
Sbjct: 340 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG 379



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K K       LFK + S GL  D   ++ LI    + G++     V
Sbjct: 102 PDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSV 161

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +      PDVVT +++I  +CK                    P+ + Y+ +I GLCK
Sbjct: 162 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 221

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A E+  +MK     P+ +TY  +I G C + D   A+  F EM++ G +P+V T
Sbjct: 222 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYT 281

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK G  D A  + D M      P+  TY TL+ G C   ++  A   +  M+
Sbjct: 282 YNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMK 341

Query: 253 SMGC 256
             GC
Sbjct: 342 ERGC 345



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F+I++  L K        SL +   + G   D++T++ +++   K  ++     ++ +I
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
             +  TP + T              YN +++GLCK G +++A +L  K+ D    P+VVT
Sbjct: 61  TANGCTPTIAT--------------YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 106

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YTS+I G        EA +LF EM  +G+  + V +  ++  L + GK+ +ASS+   M 
Sbjct: 107 YTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMT 166

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G  PD  T +T++DG C  GR+  A  +F SME+ G
Sbjct: 167 SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 204



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + + M+  L K       + +FK + + GL P+   +S LI+  CK  ++     +
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++ ++  TPD +T+  LI                       CKPD  TYN +I G CK
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D A  +F  M      PNVVTY ++I G C      +A   +  M ++G  P+   
Sbjct: 292 AGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFV 351

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++D LCK+GK++    L D M + GV  ++ T   L+   C   RV+ A  LF ++ 
Sbjct: 352 YSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIR 410

Query: 253 SMG 255
             G
Sbjct: 411 KEG 413



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 18  EALC-IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A C +FD M     SP  V+ +  ++  L K +        ++ +   G  PD + +S 
Sbjct: 296 DAACGVFDDMSSSRCSPNVVT-YGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSS 354

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFT-------------------PDVVTFTSLIKVCK 117
           L++  CK G++  G ++   + RS                        V  F ++ K   
Sbjct: 355 LVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 414

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           P    YN+II  L K G V++ + ++ +M
Sbjct: 415 PHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +FD M+ +  +P  V +FN ++  L          +L  ++   GL  D+ T+  +
Sbjct: 209 EAVALFDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N  CKMG       +L ++  +                KPD + Y+ IID LCK G   
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHI--------------KPDVVIYSAIIDRLCKDGHHS 313

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+ LF +M +K + PNV TY  +I GFC    W++A+RL  +M+++ + P+V+TFN ++
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
               K GK+ EA  L D M+   + PD  TYN+++ GFC   R + AK +F  M S
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 39/272 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  FDYM+R  P    V   N ++G   +    D  +SL++++    +  ++Y+ +I
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDG-LCKQG 134
           LI CFC   ++S      G++ +  F PDVVTF +L+  +C  D I+    + G + + G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--------- 185
           F++ A  LF +M +  + P V+T+ ++I G C      EA  L  +M+ +G         
Sbjct: 207 FLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 186 --------------------------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
                                     ++P+VV ++ I+D LCK+G   +A  L   M++ 
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           G+ P+ FTYN ++DGFC  GR + A+ L   M
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 357



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 53/289 (18%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M   H  P  V  ++ ++  L K+ H+     LF  +   G+ P+++T++ +I
Sbjct: 280 ALNLLSKMEETHIKPDVVI-YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVC--------- 116
           + FC  GR S    +L  ++     PDV+TF +LI             K+C         
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 117 ------------------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                                          PD +T+NTIID  C+   VD+  +L  ++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N  TY ++I GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K+
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA  L +++    +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 30/260 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E LC  D ML     P  V+ +N M+    K+  +D    +F  + S    PD+ T + +
Sbjct: 386 EKLC--DEMLHRCIFPDTVT-YNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTI 438

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------V 115
           I+ +C+  RV  G  +L  I R     +  T+ +LI                       V
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD IT N ++ G C+   +++A ELF  ++   +  + V Y  +I G C  +  +EA 
Sbjct: 499 C-PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +   GV+P+V T+NV++   C    + +A+ L   M  +G  PD  TYNTL+ G 
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G ++ + EL   M S G
Sbjct: 618 LKAGEIDKSIELISEMRSNG 637



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD M     + P V +FN ++    + K  D  + L + ++  GL  +  T++ 
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVCK 117
           LI+ FC++  ++    +   ++     PD +T                      +I++ K
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + YN II G+CK   VD+A +LF  +    V+P+V TY  +I GFC  +  ++A 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G +P+  T+N ++    K G++D++  L+  M  +G   DAFT   + D
Sbjct: 593 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A + F  M         V    VI  F   N  + A  L+ +M  + +  N+ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  + S    + + G +PD  T+NTLL G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 21/238 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K     +       + S G+ P+++ ++ LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              I +    PDV T++ LIK +C                     P+A+TYNT+IDG CK
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++KA E+  +M +K ++PN++T++++I G+C A     A  L+ EM+ +G+ P+VV 
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +  ++D   K+G   EA  L   M + G+ P+ FT + L+DG C  GR++ A +LF++
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M+      P V  + I++  L          S+F+ + ++G+ P+LYT++ +
Sbjct: 211 KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +CK+  V     +   +L     P+VVTF  LI  +CK                   
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+   YN +IDG CK G + +A  L  +++   + P+V TY+ +I+G C  +   EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  +G  PN VT+N ++D  CK G M++A  +   M + G+ P+  T++TL+DG+C
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 237 LTGRVNHAKELFVSM 251
             G++  A  L+  M
Sbjct: 450 KAGKMEAAMGLYTEM 464



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N++L  L K   +DT+  ++  + + G  P++ T+  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P VV +T LI+ +C                     P+  TYNT++DG CK
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA EL+ +M    + PNVVT+  +I G C  ++   A++  I+M   GV PN+  
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK G + EA SL   + +H + PD FTY+ L+ G C   R+  A  L   M+
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 253 SMG 255
             G
Sbjct: 396 KKG 398



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M R     P + ++N M+    K  H    L L++ +   GL P++ T  I
Sbjct: 245 SEAESMFRTM-RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGI 303

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK   +      L  +      P++  +  LI   CK                  
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+ +I GLC    +++A  L  +MK K   PN VTY ++I G+C   +  +A 
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M ++G++PN++TF+ ++D  CK GKM+ A  L   M+  G+ PD   Y  L+DG 
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G    A  L   M+  G
Sbjct: 484 FKDGNTKEAFRLHKEMQEAG 503



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 20/220 (9%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI-----LRSC-FTPDVV 107
           +V ++  RL S+   P+++   +LI  F +MG V     V  ++     +++C    D +
Sbjct: 111 SVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGL 168

Query: 108 T----FTSLIKV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                F ++ KV          P+ +TY T+IDG C+QG   KA  LF +M +K + P V
Sbjct: 169 VKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTV 228

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V YT +IRG C  +  +EA+ +F  M + G+ PN+ T+N +MD  CK   + +A  L   
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+  G+ P+  T+  L+DG C T  +  A++  + M S G
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++     N+  +  L LF+++    + PD+ T ++ ++    +G +  G  +   I
Sbjct: 699 SWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYI 758

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                  D+                 N++I+   K G +  A+   L      V PN VT
Sbjct: 759 RHRGLDTDLCL--------------NNSLINMYSKCGEIGTARRFSL------VLPNDVT 798

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           +  V+    +A    E K+ F  M  D  ++P +  F  ++D LC+ G + EA    + +
Sbjct: 799 FMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEA---YEFI 855

Query: 217 IQHGVRPDAFTYNTLLDGFCLTG 239
           ++  VRP+A  + TLL    L G
Sbjct: 856 LKMPVRPNAVVWRTLLGACSLQG 878



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P      ++I      G V  A  +F ++  KN+    +++TSVI  +      N+A +
Sbjct: 663 EPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNL----ISWTSVISAYVDNQRPNKALQ 718

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M    VQP++VT  V +      G +D    +   +   G+  D    N+L++ + 
Sbjct: 719 LFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYS 778

Query: 237 LTGRVNHAKE 246
             G +  A+ 
Sbjct: 779 KCGEIGTARR 788


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 136/254 (53%), Gaps = 24/254 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M   +   P V S+N ++  L +  ++     ++ R+   G++PD+YTH+I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 77  LINCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIK-- 114
            +  FC  GR                    VS+  V+ G    +C       F  ++K  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +C PD +T+N +I  LCK+G V ++++LF K+  + V PN+ T+   I+G C     +EA
Sbjct: 212 IC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            RL   ++ +G+ P+V+++N ++   CK+ K+ EA   L  M+  GV P+ FTYNT+++G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 235 FCLTGRVNHAKELF 248
           FC  G + +A ++ 
Sbjct: 331 FCKAGMMQNADKIL 344



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+ +F Y          +  +N ++  L+K       L L K +   G  PD++T+++
Sbjct: 373 NRAMAVF-YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CKMG +S    +L                ++ K C PD  T+NT+IDG CKQ  +
Sbjct: 432 VVNGLCKMGCLSDANGILN--------------DAIAKGCIPDIFTFNTLIDGYCKQRNM 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    + P+V+TY +++ G C A   +     F  M+++G  PN++T+N++
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++  CK+ K+ EA  L   M   G+ PD  T  TL+ G C  G ++ A ELFV++E
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    K+           ++ ++G+ P+ +T++ +IN FCK G + +   +
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD  T++SLI                     K  K   I YNT++ GL K
Sbjct: 344 LRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG V +A +L   M +    P++ TY  V+ G C     ++A  +  + + +G  P++ T
Sbjct: 404 QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFT 463

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK   MD+A  +LD M+ HG+ PD  TYNTLL+G C   ++++  + F +M 
Sbjct: 464 FNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML 523

Query: 253 SMGC 256
             GC
Sbjct: 524 EKGC 527



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA C    M+     P   + +N ++    K         + +     G  PD +T+S L
Sbjct: 304 EAECYLHKMVNSGVEPNEFT-YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSL 362

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C  G ++    V    +   F   ++ + +L+K                      C
Sbjct: 363 INGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGC 422

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TYN +++GLCK G +  A  +      K   P++ T+ ++I G+C   + ++A  
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M+  G+ P+V+T+N +++ LCK  K+D        M++ G  P+  TYN L++ FC
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 237 LTGRVNHAKELFVSMESMG 255
              +V+ A ELF  M++ G
Sbjct: 543 KDRKVSEAMELFKEMKTRG 561



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 16/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ I D ML  H   P V ++N +L  L K +  D V+  FK +   G  P++ T++I
Sbjct: 478 DKAIEILDTMLS-HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FCK  +VS    +   +     TPD+VT  +LI  C            GLC  G +
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI--C------------GLCSNGEL 582

Query: 137 DKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           DKA ELF+ + K+     +   +  +I  FC   + + A++LF +M      P+  T+ V
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           ++D  CK G +D A + L   I  G+ P   T   +L+  C+T R++ A
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEA 691



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 22/180 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++    K++     + LFK + + GL PD+ T   LI   C  G +   + +
Sbjct: 529 PNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYEL 588

Query: 94  LGRILRSC-FTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
              I +   F+     F  +I                       C PD  TY  +ID  C
Sbjct: 589 FVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC 648

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A    L+   K + P+  T   V+   C  +  +EA  +   M+  G+ P  V
Sbjct: 649 KTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV 708



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLFI 179
           TY  +I+ L   G  +  +++  +M+ KNV   ++   Y  ++R +       EA  +F 
Sbjct: 42  TYKCMIEKLGLHGKFEAMEDVLAEMR-KNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFE 100

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M     +P+V ++N IM+ L + G   +A  +   M   G+ PD +T+   +  FC+TG
Sbjct: 101 RMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITG 160

Query: 240 RVNHAKELFVSMESMGC 256
           R   A  L  +M   GC
Sbjct: 161 RPTAALRLLNNMPGQGC 177



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 35/168 (20%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y  I+    ++G V +A  +F +M   + +P+V +Y +++        +++A ++++ M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 183 DQGVQPNVVTFNVIMDELCKNGK-----------------------------------MD 207
           D G+ P+V T  + M   C  G+                                     
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI 198

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           EA  L D M++ G+ PD  T+N L+   C  G V  +++LF  +   G
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 21/238 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K     +       + S G+ P+++ ++ LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              I +    PDV T++ LIK +C                     P+A+TYNT+IDG CK
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++KA E+  +M +K ++PN++T++++I G+C A     A  L+ EM+ +G+ P+VV 
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVA 475

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +  ++D   K+G   EA  L   M + G+ P+ FT + L+DG C  GR++ A +LF++
Sbjct: 476 YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M+      P V  + I++  L          S+F+ + ++G+ P+LYT++ +
Sbjct: 211 KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ +CK+  V     +   +L     P+VVTF  LI  +CK                   
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+   YN +IDG CK G + +A  L  +++   + P+V TY+ +I+G C  +   EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  +G  PN VT+N ++D  CK G M++A  +   M + G+ P+  T++TL+DG+C
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 237 LTGRVNHAKELFVSM 251
             G++  A  L+  M
Sbjct: 450 KAGKMEAAMGLYTEM 464



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N++L  L K   +DT+  ++  + + G  P++ T+  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     P VV +T LI+ +C                     P+  TYNT++DG CK
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V KA EL+ +M    + PNVVT+  +I G C  ++   A++  I+M   GV PN+  
Sbjct: 276 IAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK G + EA SL   + +H + PD FTY+ L+ G C   R+  A  L   M+
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 253 SMG 255
             G
Sbjct: 396 KKG 398



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 23/235 (9%)

Query: 42  MLGCLAKNKHYD---TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI- 97
           ++ CL K++      +V ++  RL S+   P+++   +LI  F +MG V     V  ++ 
Sbjct: 96  LIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMD 153

Query: 98  ----LRSC-FTPDVVT----FTSLIKV--------CKPDAITYNTIIDGLCKQGFVDKAK 140
               +++C    D +     F ++ KV          P+ +TY T+IDG C+QG   KA 
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LF +M +K + P VV YT +IRG C  +  +EA+ +F  M + G+ PN+ T+N +MD  
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK   + +A  L   M+  G+ P+  T+  L+DG C T  +  A++  + M S G
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 69/270 (25%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++    K  +    LSL   +    + PD++T+SILI   C + R+     +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KVC--------KPDAITYNTIIDGLCK 132
           L  + +  F P+ VT+ +LI             +VC        +P+ IT++T+IDG CK
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  L+ +M  K + P+VV YT++I G     +  EA RL  EM + G+ PNV T
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 193 FNVIMDELCKNGKMDEASSL----------------LD------------LMIQ------ 218
            + ++D LCK+G++ +A  L                LD             +IQ      
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDG 570

Query: 219 --------------HGVRPDAFTYNTLLDG 234
                          G+RPD FT   ++ G
Sbjct: 571 RIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K+ +      L K +   GL P+++T S LI+  CK GR+S    +
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 94  LGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
               L    T    + T+ +   +C P+ + Y  +I GLC  G + KA + F  M+   +
Sbjct: 531 F---LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P+V T   +I+G   A    +   L  +++  G+ PN   + V+     ++G +  A S
Sbjct: 588 RPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALS 647

Query: 212 LLDLMIQHGVRP 223
                   GV+P
Sbjct: 648 FCG----EGVQP 655



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 39/244 (15%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+AL +F  M +M    P + +  + L   A     D    +   +   GL  DL  ++
Sbjct: 730 PNKALQLFRQM-QMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNN 788

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LIN + K G +        R+       DV T+TS+I               G    G 
Sbjct: 789 SLINMYSKCGEIG----TARRLFDGTQKKDVTTWTSMIV--------------GHALHGQ 830

Query: 136 VDKAKELFLKMKDKN----------------VKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ++A +LF +MK+ N                V PN VT+  V+    +A    E K+ F 
Sbjct: 831 AEEALQLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFR 890

Query: 180 EMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            M  D  ++P +  F  ++D LC+ G + EA    + +++  VRP+A  + TLL    L 
Sbjct: 891 SMKEDYSLRPRISHFGCMVDLLCRAGLLTEA---YEFILKMPVRPNAVVWRTLLGACSLQ 947

Query: 239 GRVN 242
           G  N
Sbjct: 948 GDSN 951



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
           F +++K   P  I       G       +KA +LF +M+  + +P++VT T  +      
Sbjct: 703 FHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADL 762

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              +  + +   +  +G+  ++   N +++   K G++  A  L D       + D  T+
Sbjct: 763 GALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFD----GTQKKDVTTW 818

Query: 229 NTLLDGFCLTGRVNHAKELFVSMES 253
            +++ G  L G+   A +LF  M+ 
Sbjct: 819 TSMIVGHALHGQAEEALQLFTEMKE 843


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 37/260 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P VS+FNI++  L K       + + + ++S GL PD  T + L+  F + G +      
Sbjct: 191 PDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRV 250

Query: 89  --------------------HGFVVLGRILRSCFTPDVVT----FTSLIKV--------C 116
                               HGF   GRI  +    D ++     T  I++        C
Sbjct: 251 KEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGC 310

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD  TYN +ID LC +G + +A  L  +M+      NV+TY ++I GFC      EA+ 
Sbjct: 311 QPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEE 370

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M  QG+  N VT+N ++D LCK+ ++ EA+ L+D MI  G++PD FTYN++L  FC
Sbjct: 371 IFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFC 430

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A ++  +M S GC
Sbjct: 431 REGDIQKAADIVQTMTSNGC 450



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 14/210 (6%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           ++    +   + L+  + + G  PD +T+++LI+  C  G++     +L  +        
Sbjct: 289 MSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREME------- 341

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                  I  C  + ITYNT+IDG CK   +++A+E+F +M+ + +  N VTY ++I G 
Sbjct: 342 -------ISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGL 394

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C +    EA +L  +M+ +G++P+  T+N ++   C+ G + +A+ ++  M  +G  PD 
Sbjct: 395 CKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDI 454

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY TL+ G C  GRV  A  L  S++  G
Sbjct: 455 VTYGTLIGGLCKAGRVEVASRLLRSIQLKG 484



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++    KNK  +    +F ++   GL  +  T++ LI+  CK  RV     ++ 
Sbjct: 349 VITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMD 408

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           +++     PD  T+ S++                       C+PD +TY T+I GLCK G
Sbjct: 409 QMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAG 468

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V+ A  L   ++ K +      Y  VI+         EA RLF EM ++G  P+  T+ 
Sbjct: 469 RVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYK 528

Query: 195 VIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++   L  +G  + EA   +  MI+ G  P+  ++  L +G C
Sbjct: 529 IVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLC 571



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 51/197 (25%)

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
           T + K  KPD  T+N +I  LCK   +  A  +  +M    + P+  T+T++++GF    
Sbjct: 183 TMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEG 242

Query: 170 DWNEAKR---------------------------------------------------LF 178
           + + A R                                                   L+
Sbjct: 243 NMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELY 302

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM ++G QP+  T+N+++D LC  GK+ EA  LL  M   G   +  TYNTL+DGFC  
Sbjct: 303 NEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKN 362

Query: 239 GRVNHAKELFVSMESMG 255
            ++  A+E+F  ME  G
Sbjct: 363 KKIEEAEEIFDQMEIQG 379



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 16/205 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  + D M+ M    P   ++N ML    +         + + + S G  PD+ T+  
Sbjct: 401 QEAAQLMDQMI-MEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGT 459

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI   CK GRV     V  R+LRS     +        V  P A  YN +I  L K+   
Sbjct: 460 LIGGLCKAGRVE----VASRLLRSIQLKGM--------VLTPHA--YNPVIQALFKRKRT 505

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAKRLFIEMMDQGVQPNVVTFNV 195
            +A  LF +M++K   P+  TY  V RG   +     EA    IEM+++G  P   +F +
Sbjct: 506 KEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYM 565

Query: 196 IMDELCKNGKMDEASSLLDLMIQHG 220
           + + LC     D    L+DL+++  
Sbjct: 566 LAEGLCSLSMEDTLIKLVDLVMEKA 590



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 62/137 (45%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D + YN +++ L     +   + +   M  K +KP+V T+  +I+  C A+    A  + 
Sbjct: 157 DTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVM 216

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM   G+ P+  TF  +M    + G MD A  + + M+  G      T N L+ GFC  
Sbjct: 217 EEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKE 276

Query: 239 GRVNHAKELFVSMESMG 255
           GR+  A      M + G
Sbjct: 277 GRIEEALSFIDEMSNEG 293



 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P++  Y  I+  L K G  +  K++  +MK  + + +       I  +     + E   
Sbjct: 84  RPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEI-L 142

Query: 177 LFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +E+M+   G+  + + +N +++ L    K+    ++   M+  G++PD  T+N L+  
Sbjct: 143 CIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKA 202

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C   ++  A  +   M S G
Sbjct: 203 LCKAHQIRPAILVMEEMSSYG 223


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 136/254 (53%), Gaps = 24/254 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M   +   P V S+N ++  L +  ++     ++ R+   G++PD+YTH+I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 77  LINCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIK-- 114
            +  FC  GR                    VS+  V+ G    +C       F  ++K  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +C PD +T+N +I  LCK+G V ++++LF K+  + V PN+ T+   I+G C     +EA
Sbjct: 212 IC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            RL   ++ +G+ P+V+++N ++   CK+ K+ EA   L  M+  GV P+ FTYNT+++G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 235 FCLTGRVNHAKELF 248
           FC  G + +A ++ 
Sbjct: 331 FCKAGMMQNADKIL 344



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 116/214 (54%), Gaps = 14/214 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L+K       L L K +   G  PD++T+++++N  CKMG +S    +L    
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN--- 450

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                       ++ K C PD  T+NT+IDG CKQ  +DKA E+   M    + P+V+TY
Sbjct: 451 -----------DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++ G C A   +     F  M+++G  PN++T+N++++  CK+ K+ EA  L   M  
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            G+ PD  T  TL+ G C  G ++ A ELFV++E
Sbjct: 560 RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE 593



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    K+           ++ ++G+ P+ +T++ +IN FCK G + +   +
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD  T++SLI                     K  K   I YNT++ GL K
Sbjct: 344 LRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG V +A +L   M +    P++ TY  V+ G C     ++A  +  + + +G  P++ T
Sbjct: 404 QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFT 463

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK   MD+A  +LD M+ HG+ PD  TYNTLL+G C   ++++  + F +M 
Sbjct: 464 FNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML 523

Query: 253 SMGC 256
             GC
Sbjct: 524 EKGC 527



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA C    M+     P   + +N ++    K         + +     G  PD +T+S L
Sbjct: 304 EAECYLHKMVNSGVEPNEFT-YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSL 362

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C  G ++    V    +   F   ++ + +L+K                      C
Sbjct: 363 INGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGC 422

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TYN +++GLCK G +  A  +      K   P++ T+ ++I G+C   + ++A  
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M+  G+ P+V+T+N +++ LCK  K+D        M++ G  P+  TYN L++ FC
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 237 LTGRVNHAKELFVSMESMG 255
              +V+ A ELF  M++ G
Sbjct: 543 KDRKVSEAMELFKEMKTRG 561



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 16/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ I D ML  H   P V ++N +L  L K +  D V+  FK +   G  P++ T++I
Sbjct: 478 DKAIEILDTMLS-HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FCK  +VS    +   +     TPD+VT  +LI  C            GLC  G +
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI--C------------GLCSNGEL 582

Query: 137 DKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           DKA ELF+ + K+     +   +  +I  FC   + + A++LF +M      P+  T+ V
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           ++D  CK G +D A + L   I  G+ P   T   +L+  C+T R++ A
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEA 691



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 22/180 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++    K++     + LFK + + GL PD+ T   LI   C  G +   + +
Sbjct: 529 PNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYEL 588

Query: 94  LGRILRSC-FTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
              I +   F+     F  +I                       C PD  TY  +ID  C
Sbjct: 589 FVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC 648

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A    L+   K + P+  T   V+   C  +  +EA  +   M+  G+ P  V
Sbjct: 649 KTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV 708



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLFI 179
           TY  +I+ L   G  +  +++  +M+ KNV   ++   Y  ++R +       EA  +F 
Sbjct: 42  TYKCMIEKLGLHGKFEAMEDVLAEMR-KNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFE 100

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M     +P+V ++N IM+ L + G   +A  +   M   G+ PD +T+   +  FC+TG
Sbjct: 101 RMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITG 160

Query: 240 RVNHAKELFVSMESMGC 256
           R   A  L  +M   GC
Sbjct: 161 RPTAALRLLNNMPGQGC 177



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 35/168 (20%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y  I+    ++G V +A  +F +M   + +P+V +Y +++        +++A ++++ M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 183 DQGVQPNVVTFNVIMDELCKNGK-----------------------------------MD 207
           D G+ P+V T  + M   C  G+                                     
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI 198

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           EA  L D M++ G+ PD  T+N L+   C  G V  +++LF  +   G
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L KN+ +D    LFK +   GL P+  T++ILI+  CK G +     +
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++        V  + SLI   CK                    P A +Y+ +I GLC+
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    EL  +M ++ +  N  T+T++I GFC     +EA RLF +M+D  V PN VT
Sbjct: 479 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 538

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+++  C  G + +A  L D M++ G++PD +TY +L+ G CLT  V+ A E    +E
Sbjct: 539 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 598

Query: 253 S 253
           +
Sbjct: 599 N 599



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 26  MLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           ++RM       S+  +N+++  L KN      + +   + + G+  D  T+  L+  FC+
Sbjct: 244 VVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCR 303

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           M  +     +   ++R  F P     + +I              D L K+  V++A  L 
Sbjct: 304 MEELEMALRITHDMIRLGFVPSEANCSFMI--------------DELRKKELVEEAFSLA 349

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            K+ D  + PNV  Y ++I   C    +++A RLF EM  +G++PN VT+ +++  LCK 
Sbjct: 350 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 409

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G +++A  L D M   G++   + YN+L++G+C  G ++ A+ L   M   G
Sbjct: 410 GMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 461



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E  C+    ++     P    +  M+  L+K ++    L+ + ++   G  P+  TH++L
Sbjct: 658 EKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVL 717

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCK 117
           IN  CK G +    ++   +L     P+  T+                    +++++   
Sbjct: 718 INNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 777

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
              +++N +I GLCK G + +A +L  K+ +    P+ ++Y+++I   C   D N+A  L
Sbjct: 778 ASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFEL 837

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G++P+VV +N+ +     +G+ D+A  +   MI+ GV+P+  TY  LL G  L
Sbjct: 838 WNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISL 897



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 34/262 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  +FD M+  +  P  V+ FN+M+   CL  N        L+ ++   GL PD YT+
Sbjct: 518 DEAARLFDKMIDSNVIPNEVT-FNVMIEGYCLVGNIR--KAFQLYDQMVEMGLKPDNYTY 574

Query: 75  SILINCFCKMGRVS-------------------------HGFVVLGRILRSCFTPDVVTF 109
             LI+  C    VS                         +GF   GR   +    D +  
Sbjct: 575 RSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMA- 633

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
              ++  K D +++  I+    KQ   +K+  LF +MK++ VKP+ + YT +I       
Sbjct: 634 ---VRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEE 690

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +  +A   + +M+  G  PN VT  V+++ LCK+G +  A  L   M+   V P+ FTYN
Sbjct: 691 NMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 750

Query: 230 TLLDGFCLTGRVNHAKELFVSM 251
             LD F   G +  AK+L  +M
Sbjct: 751 CFLDYFATEGDMEKAKDLHSAM 772



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K + +     LF ++  +G+  D Y ++  I  +C+   +     ++ R+    
Sbjct: 192 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES-- 249

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       +  K  A+ YN ++ GLCK   V +A E+   M +  V  + VTY ++
Sbjct: 250 ------------EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 297

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + GFC   +   A R+  +M+  G  P+    + ++DEL K   ++EA SL   +   G+
Sbjct: 298 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 357

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+ F YN L+D  C   R + A  LF  M   G
Sbjct: 358 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 391



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T + I+  L K      A++LF KM    V  +   YT+ IR +C + + + A+ L + M
Sbjct: 188 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 247

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +GV+ + V +NV+M  LCKN ++ EA  + ++M+  GV  D  TY TL+ GFC    +
Sbjct: 248 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 307

Query: 242 NHAKELFVSMESMG 255
             A  +   M  +G
Sbjct: 308 EMALRITHDMIRLG 321


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  IF  M+      P V S++I++    K         L+K++      P++ T++ 
Sbjct: 138 HQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 197

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            +N   + GR++    V   ++ +  +PDV+T+++LI                     + 
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRG 257

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+A+TYN ++ GLCK+   D+A ELF KM ++   P+ VTYT+++ GFC      +A 
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAV 317

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM+ +G  P+VV +N ++    + GK  EA  L  +M+    +PD  ++N ++DG 
Sbjct: 318 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGL 377

Query: 236 CLTGRVNHAKELFVSMES-MGC 256
               R++ A E+F  ME   GC
Sbjct: 378 SKAKRLDDAVEVFERMEQDHGC 399



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 17/220 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S+N +L  L K K      ++F  + S   + PD+ ++SILI+ FCK+         LGR
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE-------LGR 175

Query: 97  ILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
             +         +  +I + C P+  TYN  ++GL ++G +  A+ ++ +M      P+V
Sbjct: 176 AEK--------LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDV 227

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY+++I GF  A   ++A  LF  M+ +G +PN VT+N ++  LCK  K DEA  L   
Sbjct: 228 ITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 287

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M++ G  PD  TY TLL GFC  G++  A E+F  M S G
Sbjct: 288 MVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 327



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 23/210 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F+ M+     P  V+ +N +L  L K    D    LF+++   G  PD  T++ 
Sbjct: 244 DQAHELFEAMISRGCRPNAVT-YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           L+  FC +G++     V   ++     PDVV +  L+K                      
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           CKPD +++N +IDGL K   +D A E+F +M +D    P++VTY S+I G C     +EA
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 422

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            ++F E+    + P+   FNV+++ +   G
Sbjct: 423 MKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV---TYTSVIRGFCYANDWNEAKRL 177
           + +   + GLCK G +++A E    M++           T  SVI+  C A   + A  L
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDA-FTYNTLLDGF 235
              M+ +G  P++ T +++++ELCK  K+ EA   L  M +    R  + F+YN+LL+  
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSL 131

Query: 236 CLTGRVNHAKELFVSMES 253
           C   +V+ A  +F +M S
Sbjct: 132 CKAKKVHQAFAIFSTMVS 149



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 154 NVVTYTSVIRGFCYANDWN---EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           N V +T+ + G C +       EA R   E +     P+  T + ++ ELCK G++D A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           SLL+ MI+ G  PD  T++ L++  C   ++  A+E    M
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTH 74
           P EA  +F  M+     P  VS  NIM+  L+K K  D  + +F+R+    G  PDL T+
Sbjct: 348 PGEARQLFQVMVSRECKPDTVS-HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 406

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           + LI   C   R+S    V   I R   +PD   F  L++ 
Sbjct: 407 NSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R H   P V + ++++G L K         +F  +   G  
Sbjct: 301 GYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 359

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     PD  TF  LIK              
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KPD +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 479

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G+  ++V F+ I++ LCK G++ +A ++ DL +  G+ PDA  
Sbjct: 480 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 539

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN L+DG+CL G++  A  +F +M S G
Sbjct: 540 YNMLMDGYCLVGKMEKALRVFDAMVSAG 567



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD++++S
Sbjct: 130 PELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 189

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +P+VV + ++I          K C       
Sbjct: 190 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 249

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TYN+++  LCK   +DKA+    +M +K V PN  TY ++I G+     W 
Sbjct: 250 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 309

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT +++M  LCK GK+ EA  + D M   G  PD F+YN +L
Sbjct: 310 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 369

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 370 NGYATKGCLVDMTDLF 385



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y ++ 
Sbjct: 414 DKAMIIFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI  FC  G +     ++  I+ +    D+V F+S+I  +CK                  
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA+ YN ++DG C  G ++KA  +F  M    ++PNVV Y +++ G+C     +E  
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+ +G++P+ + +++I+D L + G+   A      M + G+  D  TYN +L G 
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 236 CLTGRVNHAKELFVSMESM 254
                 + A  LF  + +M
Sbjct: 653 FKNRCFDEAIFLFKELRAM 671



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 45  TLRPEEAHDLLDELQR-RGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASR 103

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    +++    L++      
Sbjct: 104 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAK 163

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      PNVV
Sbjct: 164 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVV 223

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P++VT+N ++  LCK   MD+A + L  M
Sbjct: 224 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 283

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   V P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 284 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 319



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     N+A  +F  M++    PP + ++N ++  L K +  D   +  +++ +  +
Sbjct: 235 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ LI  +   G+      V   + R    PDVVT + L+              
Sbjct: 289 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM-------------- 334

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
             LCK G + +A+++F  M  K   P+V +Y  ++ G+       +   LF  M+  G+ 
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 394

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  TFNV++      G +D+A  + + M  HGV+PD  TY T++   C  G+++ A E 
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 454

Query: 248 FVSMESMG 255
           F  M   G
Sbjct: 455 FNQMIDQG 462



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IFD  + +   P  V  +N+++         +  L +F  + S G+ P++  +  L
Sbjct: 520 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 578

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N +CK+GR+  G  +   +L+              +  KP  I Y+ IIDGL + G   
Sbjct: 579 VNGYCKIGRIDEGLSLFREMLQ--------------RGIKPSTILYSIIIDGLFEAGRTV 624

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK  F +M +  +  ++ TY  V+RG      ++EA  LF E+    V+ N++T N ++
Sbjct: 625 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 684

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D + +  +++EA  L   + +  + P   TY+ ++      G V  A+++F SM++ GC
Sbjct: 685 DGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 743



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +V  P + TY  ++D   +    + A   F ++    ++ N++    ++ GFC A   +E
Sbjct: 108 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 167

Query: 174 AKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYNT 230
           A  + +    + G  P+V ++++++  LC  GK  +A  LL +M + G    P+   YNT
Sbjct: 168 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 227

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++DGF   G VN A +LF  M   G
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRG 252



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 14/178 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++NI+L  L KN+ +D  + LFK L +  +  ++ T + +I+   +  RV     +  
Sbjct: 642 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 701

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            I RS   P VVT              Y+ +I  L K+G V++A+++F  M++   +PN 
Sbjct: 702 SISRSRLVPSVVT--------------YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 747

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                V+R     N+   A     ++ ++      +T  +++D     G   E    L
Sbjct: 748 RLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 805


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+S+NI++  + +         L   +   G  PD+ ++S ++N +C+ G +   + ++ 
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 96  RILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCKQG 134
            + R    P+   + S+I    ++CK                 PD + Y T+IDG CK+G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A + F +M  +++ P+V+TYT++I GFC   D  EA +LF EM  +G++P+ VTF 
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +++  CK G M +A  + + MIQ G  P+  TY TL+DG C  G ++ A EL   M  +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 255 G 255
           G
Sbjct: 486 G 486



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   F  M+R    P  V  +  ++    K          F  ++S  + PD+ T++ +
Sbjct: 334 EAEEAFSEMIRQGILPDTVV-YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ FC++G +     +   +      PD VTFT LI                       C
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TY T+IDGLCK+G +D A EL  +M    ++PN+ TY S++ G C + +  EA +
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  E    G+  + VT+  +MD  CK+G+MD+A  +L  M+  G++P   T+N L++GFC
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572

Query: 237 LTGRVNHAKELFVSMESMG 255
           L G +   ++L   M + G
Sbjct: 573 LHGMLEDGEKLLNWMLAKG 591



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 137/259 (52%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            A   F Y +      P V ++  ++    +         LF  +   GL PD  T + L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK G +   F V   ++++  +P+VVT+T+LI  +CK                   
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  TYN+I++GLCK G +++A +L  + +   +  + VTYT+++  +C + + ++A+ 
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM+ +G+QP +VTFNV+M+  C +G +++   LL+ M+  G+ P+A T+N+L+  +C
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

Query: 237 LTGRVNHAKELFVSMESMG 255
           +   +  A  ++  M S G
Sbjct: 608 IRNNLKAATAIYKDMCSRG 626



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + ++M++   SP  V ++  ++  L K    D+   L   +   GL P+++T++ 
Sbjct: 438 KDAFRVHNHMIQAGCSPN-VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++N  CK G +     ++G    +    D VT+T              T++D  CK G +
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT--------------TLMDAYCKSGEM 542

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA+E+  +M  K ++P +VT+  ++ GFC      + ++L   M+ +G+ PN  TFN +
Sbjct: 543 DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 602

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + + C    +  A+++   M   GV PD  TY  L+ G C    +  A  LF  M+  G
Sbjct: 603 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 132/261 (50%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD-TVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F+ ML  +     V S N+ L  L+K+ +   T + +F+     G+  ++ +++I
Sbjct: 193 EARRVFEKMLN-YGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNI 251

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  C++GR+     +L  +    +TPDV+++++++                     K 
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP++  Y +II  LC+   + +A+E F +M  + + P+ V YT++I GFC   D   A 
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM  + + P+V+T+  I+   C+ G M EA  L   M   G+ PD+ T+  L++G+
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G +  A  +   M   GC
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGC 452



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 21/221 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K+ + +  + L     + GL  D  T++ L++ +CK G +     +
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L     P +VTF  L+                     K   P+A T+N+++   C 
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +  A  ++  M  + V P+  TY ++++G C A +  EA  LF EM  +G   +V T
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 668

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++V++    K  K  EA  + D M + G+  D   ++   D
Sbjct: 669 YSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 21/203 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  ++    K+   D    + K +   GL P + T ++L+N FC  G +  G  +L  +
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587

Query: 98  LRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCKQGFV 136
           L     P+  TF SL+K                 +C     PD  TY  ++ G CK   +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF +MK K    +V TY+ +I+GF     + EA+ +F +M  +G+  +   F+  
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707

Query: 197 MDELCKNGKMDEASSLLDLMIQH 219
            D   K  + D     +D +I++
Sbjct: 708 SDTKYKGKRPDTIVDPIDEIIEN 730


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 21/214 (9%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK 117
           F  +   GL  D  T++ LIN  C+ G +     VL  +L      D VT+T L+   CK
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               P+ +TY  + DGLCKQG V  A EL  +M +K ++ N  T
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACT 506

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+I G C A   ++A R   +M   G++P+V T+  ++D LCK+G++D A  LL  M+
Sbjct: 507 YNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +G++P   TYN L++GFC++GRV   K+L   M
Sbjct: 567 DNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWM 600



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 22/250 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M R   +   V+ +  ++  L +         + + + +  L  D  T+++L++ +C
Sbjct: 387 FDEMQRKGLATDGVT-YTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAI 121
           K G+++  F V   +++    P+VVT+T+L   +CK                     +A 
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNAC 505

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN++I+GLCK G++D+A      M    +KP+V TYT++I   C + + + A  L  EM
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D G++P +VT+NV+M+  C +G+++    LL+ M++  + P+A TYN+L+  +C+   +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNM 625

Query: 242 NHAKELFVSM 251
               E++  M
Sbjct: 626 KSTTEIYKGM 635



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI+L  L      +    LF  + S    PD+ T+ ILI+ +C +G + +   +L 
Sbjct: 262 VCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLD 318

Query: 96  RILRSCFTPDVVTFTSLIKV-CK----PDAIT----------------YNTIIDGLCKQG 134
            ++     P+   +TS++ + C      DA+T                Y T++ G C +G
Sbjct: 319 DMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKG 378

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A+  F +M+ K +  + VTYT++I G C A +  EA+++  EM+ + +  + VT+ 
Sbjct: 379 DLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYT 438

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           V++D  CK GKM EA  + + M+Q GV P+  TY  L DG C  G V  A EL   M + 
Sbjct: 439 VLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNK 498

Query: 255 G 255
           G
Sbjct: 499 G 499



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L K  + D  +     +++ GL PD+YT++ LI+  CK G +     +L  +
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L +   P +VT              YN +++G C  G V+  K+L   M +KN+ PN  T
Sbjct: 566 LDNGIKPTIVT--------------YNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATT 611

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+++ +C  N+      ++  M  + V+PN  T+N+++   CK   M EA    + MI
Sbjct: 612 YNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMI 671

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G R  A +Y+ L+       +   A++LF  M   G
Sbjct: 672 EKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +   L K         L   +++ GL  +  T++ LIN  CK G        
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG-------Y 519

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L + +R+    D           KPD  TY T+ID LCK G +D+A +L  +M D  +KP
Sbjct: 520 LDQAMRTMADMDAAGL-------KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP 572

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            +VTY  ++ GFC +      K+L   M+++ + PN  T+N +M + C    M   + + 
Sbjct: 573 TIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIY 632

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M    V P+  TYN L+ G C    +  A+     M   G
Sbjct: 633 KGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKG 674



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K+   D    L + +   G+ P + T+++L+N FC  GRV  G  +
Sbjct: 537 PDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKL 596

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------VC----KPDAITYNTIIDGLCK 132
           L  +L     P+  T+ SL+K                 +C    +P+  TYN +I G CK
Sbjct: 597 LEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNV 190
              + +A+    +M +K  +    +Y+++IR       + EA++LF +M  +G   +P+V
Sbjct: 657 ARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDV 716

Query: 191 VTFNV 195
             F +
Sbjct: 717 YNFYI 721



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 28/148 (18%)

Query: 136 VDKAKELFLKMKDKNV----------------------------KPNVVTYTSVIRGFCY 167
           +D+A ELF  + DKNV                             P+VVTY  +I G+C 
Sbjct: 247 LDEAIELFQGLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMASPPDVVTYGILIHGYCA 306

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +   A +L  +M+ +GV+PN   +  ++  LC  G++ +A ++++ M+ H V  D   
Sbjct: 307 LGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAV 366

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y T+L GFC  G +  A+  F  M+  G
Sbjct: 367 YTTVLSGFCNKGDLVSARRWFDEMQRKG 394


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +FD M+ +  +P  V +FN ++  L          +L  ++   GL  D+ T+  +
Sbjct: 209 EAVALFDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N  CKMG       +L ++  +   PDVV               Y+ IID LCK G   
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHIKPDVVI--------------YSAIIDRLCKDGHHS 313

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+ LF +M +K + PNV TY  +I GFC    W++A+RL  +M+++ + P+V+TFN ++
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
               K GK+ EA  L D M+   + PD  TYN+++ GFC   R + AK +F  M S
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 39/272 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  FDYM+R  P    V   N ++G   +    D  +SL++++    +  ++Y+ +I
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDG-LCKQG 134
           LI CFC   ++S      G++ +  F PDVVTF +L+  +C  D I+    + G + + G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--------- 185
           F++ A  LF +M +  + P V+T+ ++I G C      EA  L  +M+ +G         
Sbjct: 207 FLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 186 --------------------------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
                                     ++P+VV ++ I+D LCK+G   +A  L   M++ 
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           G+ P+ FTYN ++DGFC  GR + A+ L   M
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 357



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 53/289 (18%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M   H  P  V  ++ ++  L K+ H+     LF  +   G+ P+++T++ +I
Sbjct: 280 ALNLLSKMEETHIKPDVVI-YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVC--------- 116
           + FC  GR S    +L  ++     PDV+TF +LI             K+C         
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 117 ------------------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                                          PD +T+NTIID  C+   VD+  +L  ++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N  TY ++I GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K+
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA  L +++    +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 30/260 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E LC  D ML     P  V+ +N M+    K+  +D    +F  + S    PD+ T + +
Sbjct: 386 EKLC--DEMLHRCIFPDTVT-YNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTI 438

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------V 115
           I+ +C+  RV  G  +L  I R     +  T+ +LI                       V
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD IT N ++ G C+   +++A ELF  ++   +  + V Y  +I G C  +  +EA 
Sbjct: 499 C-PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +   GV+P+V T+NV++   C    + +A+ L   M  +G  PD  TYNTL+ G 
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G ++ + EL   M S G
Sbjct: 618 LKAGEIDKSIELISEMRSNG 637



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 26/232 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD M     + P V +FN ++    + K  D  + L + ++  GL  +  T++ 
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVCK 117
           LI+ FC++  ++    +   ++     PD +T                      +I++ K
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + YN II G+CK   VD+A +LF  +    V+P+V TY  +I GFC  +  ++A 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            LF +M D G +P+  T+N ++    K G++D++  L+  M  +G   DAFT
Sbjct: 593 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +F  M+  H   P   + NI+L    +N+  +  L LF+ +  + +  D   ++I
Sbjct: 484 NAAQDLFQEMIS-HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  CK  +V   + +       C  P        I   +PD  TYN +I G C +  +
Sbjct: 543 IIHGMCKGSKVDEAWDLF------CSLP--------IHGVEPDVQTYNVMISGFCGKSAI 588

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  LF KMKD   +P+  TY ++IRG   A + +++  L  EM   G   +  T  + 
Sbjct: 589 SDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMA 648

Query: 197 MDELCK 202
            + +C+
Sbjct: 649 EEIICR 654



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F+ +++M        ++NI++  + K    D    LF  L   G+ PD+ T++++
Sbjct: 520 EALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC    +S   V+  ++  +                +PD  TYNT+I G  K G +D
Sbjct: 579 ISGFCGKSAISDANVLFHKMKDNGH--------------EPDNSTYNTLIRGCLKAGEID 624

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
           K+ EL  +M+      +  T        C  +D
Sbjct: 625 KSIELISEMRSNGFSGDAFTIKMAEEIICRVSD 657



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A + F  M         V    VI  F   N  + A  L+ +M  + +  N+ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  + S    + + G +PD  T+NTLL G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 129/239 (53%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL ++  M+      P + +++ ++  L +      +++L + + S GL P++YT++I
Sbjct: 217 NEALKVYKRMIS-EGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTI 275

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I    +  R+   + +   +                + C PD ITY  +ID LC  G +
Sbjct: 276 CIRALGRARRIDDAWGIFKEMDD--------------EGCGPDVITYTVLIDALCAAGKL 321

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKAKEL++KM+  +  P+ VTY +++  F    D    KR + EM   G  P+VVT+ ++
Sbjct: 322 DKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTIL 381

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK+G +D A  +LD+M   G+ P+  TYNT++ G     R++ A EL  +MES+G
Sbjct: 382 IEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLG 440



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 14/238 (5%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A  +FD   +     P + S+N ++  L  +   +  L LF+ + S G  P+ +T+++L
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            ++   K  R++  + +    +RS             + C+P+AIT+N II  L K   ++
Sbjct: 838  LDAHGKSKRINKLYDLYSE-MRS-------------RGCEPNAITHNIIISALVKSNNLN 883

Query: 138  KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            KA +L+ ++   +  P   TY  +I G   A    +A ++F EM+D G  PN V +N+++
Sbjct: 884  KALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILI 943

Query: 198  DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +   K+G++D A  L   M++ G+RPD  +Y  L++  C+TGR++ A + F  ++  G
Sbjct: 944  NGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTG 1001



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 135/259 (52%), Gaps = 22/259 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +AL +F+ M +   + P   ++N++L    K+K  + +  L+  + S G  P+  TH+I+
Sbjct: 814  KALELFEDM-KSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNII 872

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KV--------C 116
            I+   K   ++    +   ++   F+P   T+  LI             K+        C
Sbjct: 873  ISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC 932

Query: 117  KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             P+++ YN +I+G  K G +D A ELF KM  + ++P++ +YT ++   C     +EA +
Sbjct: 933  GPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQ 992

Query: 177  LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
             F E+   G+ P+ V++N I++ L K+ ++DEA SL   M   G+ PD +TYN L+    
Sbjct: 993  YFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLG 1052

Query: 237  LTGRVNHAKELFVSMESMG 255
            + G+V+ A +++  ++ +G
Sbjct: 1053 IAGKVDVAVKMYEELQLVG 1071



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 15/237 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+  F+ M +     P +++ N  L  LA+         +F  L+  GL PD  T++
Sbjct: 461 PAKAIDTFETM-KKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYN 519

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +L+ C+ K G++     +L  ++               K C+PD +  N++I+ L K G 
Sbjct: 520 MLMKCYSKAGQIDKATQLLSEMIS--------------KGCEPDVMIINSLINTLYKAGR 565

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A ++F ++K+  + P VVTY  ++ G        +A  LF  M + G  PN +TFN 
Sbjct: 566 VDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNS 625

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++D L KN  +D A  +   M      PD  TYNT++ G    GR+++A   F  M+
Sbjct: 626 LLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK 682



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I +  L + +  D    +FK ++  G  PD+ T+++LI+  C  G++     +
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
             ++  S  +PD VT+ +L+ K  K                    PD +TY  +I+ LCK
Sbjct: 328 YVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCK 387

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A ++   M  K + PN+ TY ++I G   A   +EA  L   M   GV+P   +
Sbjct: 388 SGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFS 447

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + + +D   K+G   +A    + M + G+ P     N  L     TGR++ A+++F  + 
Sbjct: 448 YVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLH 507

Query: 253 SMG 255
             G
Sbjct: 508 KCG 510



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 19/228 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A+ IF+ ML     P  V  +NI++    K+   D    LFK++   G+ PDL +++IL
Sbjct: 919  QAMKIFEEMLDYGCGPNSVI-YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTIL 977

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--KPDAITYNTIIDGLCKQGF 135
            + C C  GR+                 + V +   +K+    PD ++YN II+GL K   
Sbjct: 978  VECLCITGRID----------------EAVQYFEELKLTGLDPDTVSYNFIINGLGKSRR 1021

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            +D+A  LF +MK++ + P++ TY ++I     A   + A +++ E+   G++P+V T+N 
Sbjct: 1022 LDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNA 1081

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            ++     +G  D+A S+   M+  G  P+  T+  L + +   G V++
Sbjct: 1082 LIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHN 1129



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N M+  L K +  D  L L + + S G+ P  +++ + I+ + K G  +     
Sbjct: 408 PNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDT 467

Query: 94  LGRILRSCFTPDVVT--------------------FTSLIKV-CKPDAITYNTIIDGLCK 132
              + +    P +                      F  L K    PD++TYN ++    K
Sbjct: 468 FETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSK 527

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA +L  +M  K  +P+V+   S+I     A   + A ++F  + +  + P VVT
Sbjct: 528 AGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT 587

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  L K GK+ +A  L   M + G  P+  T+N+LLD       V+ A ++F  M 
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMT 647

Query: 253 SMGC 256
            M C
Sbjct: 648 MMNC 651



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 113/254 (44%), Gaps = 20/254 (7%)

Query: 5   SSGEGDITTI-----TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF 59
           S  E ++ TI      PN A   F  + ++        + N ML  L + +  + ++ +F
Sbjct: 95  SVSEEEVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVF 154

Query: 60  KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119
             +    ++ +L T+  +       G +      L ++    F  +  ++  LI +  P 
Sbjct: 155 DLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLP- 213

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
                         GF ++A +++ +M  + +KP++ TY++++       D  +   L  
Sbjct: 214 --------------GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLE 259

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM   G++PN+ T+ + +  L +  ++D+A  +   M   G  PD  TY  L+D  C  G
Sbjct: 260 EMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAG 319

Query: 240 RVNHAKELFVSMES 253
           +++ AKEL+V M +
Sbjct: 320 KLDKAKELYVKMRA 333



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 68/139 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   +YN ++DGL    F +KA ELF  MK     PN  TY  ++     +   N+   L
Sbjct: 794 PTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDL 853

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM  +G +PN +T N+I+  L K+  +++A  L   ++     P   TY  L+DG   
Sbjct: 854 YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLK 913

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR   A ++F  M   GC
Sbjct: 914 AGRSEQAMKIFEEMLDYGC 932



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 32/251 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN +L CL+KN   D  L +F R+      PD+ T++ +I    + GR+ + F 
Sbjct: 617 PPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFW 676

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL----------CKQGFVDKAKEL 142
              + ++   +PD VT  +LI    P  + +  + D +          C Q       EL
Sbjct: 677 FFHQ-MKKFLSPDYVTLCTLI----PGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGEL 731

Query: 143 FLKMKDKNVKPNVVTYTSV----------------IRGFCYANDWNEAKRLFIEMMDQ-G 185
              +  +      +++  +                I+  C      +A+ +F +     G
Sbjct: 732 MECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLG 791

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P + ++N +MD L  +   ++A  L + M   G  P+ FTYN LLD    + R+N   
Sbjct: 792 IHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLY 851

Query: 246 ELFVSMESMGC 256
           +L+  M S GC
Sbjct: 852 DLYSEMRSRGC 862



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR----GFCYAN 169
           KV   +  TY TI   L  +G + +A     KM +     N  +Y  +I     GFC   
Sbjct: 160 KVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFC--- 216

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             NEA +++  M+ +G++P++ T++ +M  L + G   +  +LL+ M   G+RP+ +TY 
Sbjct: 217 --NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYT 274

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
             +       R++ A  +F  M+  GC
Sbjct: 275 ICIRALGRARRIDDAWGIFKEMDDEGC 301


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L  L + K  D    LFK +   G+FPD YT + LI+ +CK G ++    +  
Sbjct: 434 VVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLF- 492

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                    + +T  SL    KPD +TYNT++DG CK G ++KAKEL+  M  + + P+ 
Sbjct: 493 ---------ETMTLRSL----KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSY 539

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           ++++ +I GFC     +EA RL+ EM ++G++P +VT N I+    + G + +A+  L+ 
Sbjct: 540 ISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNT 599

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI  GV PD  TYNTL++ F      + A  L  +ME  G
Sbjct: 600 MISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERG 639



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ ML+     P + SF+ ++G  ++N      L+ F+++   GL PD   ++IL
Sbjct: 347 EAERVFNEMLQ-RGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTIL 405

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN +C+   VS    +   ++               + C  D +TYNT+++GLC+   +D
Sbjct: 406 INGYCRNDDVSGALKMRNEMVE--------------RGCVMDVVTYNTLLNGLCRGKMLD 451

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ELF +M ++ V P+  T T++I G+C   +  +A  LF  M  + ++P+VVT+N +M
Sbjct: 452 DADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLM 511

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G+M++A  L   MI   + P   +++ L++GFC  G V+ A  L+  M+  G
Sbjct: 512 DGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKG 569



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K   Y+    +   +   GL P+  T + ++   C+   V     V
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +L+    PD+++F+S++ V                       PD + Y  +I+G C+
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V  A ++  +M ++    +VVTY +++ G C     ++A  LF EM+++GV P+  T
Sbjct: 412 NDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYT 471

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              ++   CK+G M +A SL + M    ++PD  TYNTL+DGFC  G +  AKEL+  M 
Sbjct: 472 LTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMI 531

Query: 253 S 253
           S
Sbjct: 532 S 532



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L K+   D V      +   G++ DL T++ L+N +C+ G VS  F ++ 
Sbjct: 224 VYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLV- 282

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                C            K  KP   TYN +I+GLCK+G  ++AK +  +M    + PN 
Sbjct: 283 ----DCMAG---------KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNA 329

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            T+  ++   C   D  EA+R+F EM+ +GV P++++F+ I+    +NG++  A +  + 
Sbjct: 330 ATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEK 389

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G+ PD   Y  L++G+C    V+ A ++   M   GC
Sbjct: 390 MKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGC 430



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR       +++ N +LG + K    D    +++    +G   ++YT +I++N  CK G
Sbjct: 179 LLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDG 238

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           ++ +  V L  +                K    D +TYNT+++  C++G V +A  L   
Sbjct: 239 KLDNVGVYLSEMEE--------------KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K +KP + TY ++I G C    +  AKR+  EM+  G+ PN  TFN ++ E C+   
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + EA  + + M+Q GV PD  ++++++  F   G +  A   F  M+ +G
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L KN+ +D    LFK +   GL P+  T++ILI+  CK G +     +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++        V  + SLI   CK                    P A +Y+ +I GLC+
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    EL  +M ++ +  N  T+T++I GFC     +EA RLF +M+D  V PN VT
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+++  C  G + +A  L D M++ G++PD +TY +L+ G CLT  V+ A E    +E
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 253 S 253
           +
Sbjct: 576 N 576



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 26  MLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           ++RM       S+  +N+++  L KN      + +   + + G+  D  T+  L+  FC+
Sbjct: 221 VVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCR 280

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           M  +     +   ++R  F P     + +I              D L K+  V++A  L 
Sbjct: 281 MEELEMALRITHDMIRLGFVPSEANCSFMI--------------DELRKKELVEEAFSLA 326

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            K+ D  + PNV  Y ++I   C    +++A RLF EM  +G++PN VT+ +++  LCK 
Sbjct: 327 CKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 386

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G +++A  L D M   G++   + YN+L++G+C  G ++ A+ L   M   G
Sbjct: 387 GMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E  C+    ++     P    +  M+  L+K ++    L+ + ++   G  P+  TH++L
Sbjct: 635 EKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVL 694

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCK 117
           IN  CK G +    ++   +L     P+  T+                    +++++   
Sbjct: 695 INNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
              +++N +I GLCK G + +A +L  K+ +    P+ ++Y+++I   C   D N+A  L
Sbjct: 755 ASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFEL 814

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G++P+VV +N+ +     +G+ D+A  +   MI+ GV+P+  TY  LL G  L
Sbjct: 815 WNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISL 874



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 34/262 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  +FD M+  +  P  V+ FN+M+   CL  N        L+ ++   GL PD YT+
Sbjct: 495 DEAARLFDKMIDSNVIPNEVT-FNVMIEGYCLVGNIR--KAFQLYDQMVEMGLKPDNYTY 551

Query: 75  SILINCFCKMGRVS-------------------------HGFVVLGRILRSCFTPDVVTF 109
             LI+  C    VS                         +GF   GR   +    D +  
Sbjct: 552 RSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMA- 610

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
              ++  K D +++  I+    KQ   +K+  LF +MK++ VKP+ + YT +I       
Sbjct: 611 ---VRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEE 667

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +  +A   + +M+  G  PN VT  V+++ LCK+G +  A  L   M+   V P+ FTYN
Sbjct: 668 NMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 727

Query: 230 TLLDGFCLTGRVNHAKELFVSM 251
             LD F   G +  AK+L  +M
Sbjct: 728 CFLDYFATEGDMEKAKDLHSAM 749



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K + +     LF ++  +G+  D Y ++  I  +C+   +     ++ R+    
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES-- 226

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       +  K  A+ YN ++ GLCK   V +A E+   M +  V  + VTY ++
Sbjct: 227 ------------EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + GFC   +   A R+  +M+  G  P+    + ++DEL K   ++EA SL   +   G+
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+ F YN L+D  C   R + A  LF  M   G
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T + I+  L K      A++LF KM    V  +   YT+ IR +C + + + A+ L + M
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +GV+ + V +NV+M  LCKN ++ EA  + ++M+  GV  D  TY TL+ GFC    +
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 242 NHAKELFVSMESMG 255
             A  +   M  +G
Sbjct: 285 EMALRITHDMIRLG 298


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 17  NEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTH 74
           ++A+ +F  M R +    P   ++N ++    K K       LF+ +   G   P+L T+
Sbjct: 129 DKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTY 188

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S+LI+C+CK G V  G  +L  + R                 K D   Y+++I   C +G
Sbjct: 189 SVLIDCYCKSGEVGEGLGLLEEMEREGL--------------KADVFVYSSLISAFCGEG 234

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++  +ELF +M  + V PNVVTY+ +++G      W EA  +  +M  +GV+P+VV + 
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           V+ D LCKNG+  +A  +LDLM+Q G  P   TYN +++G C   R++ A
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDA 344



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 128/261 (49%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M +     P + ++++++ C  K+      L L + +   GL  D++ +S L
Sbjct: 167 EARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSL 226

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ FC  G +  G  +   +LR   +P+VVT++ L+                     +  
Sbjct: 227 ISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGV 286

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD + Y  + DGLCK G    A ++   M  K  +P  +TY  V+ G C  +  ++A  
Sbjct: 287 RPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFG 346

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDG 234
           +   M+ +G +P+ VT+N ++  LC  GK+ EA  L  L++     V+PD FT N L+ G
Sbjct: 347 VVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQG 406

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  GRV+ A  +  SM  MG
Sbjct: 407 LCKEGRVHDAARIHSSMVEMG 427



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 19/224 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           V + N++L    ++   D  +SLF ++  N   + PD  T++ L+N FCK  R++   V+
Sbjct: 112 VYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVL 171

Query: 94  LGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                          F ++ K   C+P+ +TY+ +ID  CK G V +   L  +M+ + +
Sbjct: 172 ---------------FEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGL 216

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K +V  Y+S+I  FC   D    + LF EM+ + V PNVVT++ +M  L + G+  EAS 
Sbjct: 217 KADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASE 276

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +L  M   GVRPD   Y  L DG C  GR   A ++   M   G
Sbjct: 277 MLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKG 320



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTH 74
           ++A  + + M++    P  V+ +N +L  L         + L+K L S      PD++T 
Sbjct: 342 DDAFGVVEMMVKKGKKPDAVT-YNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK---- 117
           + LI   CK GRV     +   ++      ++VT+  LI             K+ K    
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVE 460

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P+++TY+ +I+GLCK   +  A+ LF KMKD  ++P V+ Y +++   C  +   +
Sbjct: 461 SGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQ 520

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ LF EM +     +VV+FN+I+D   K G +  A  LL  M    + PDA T++ L++
Sbjct: 521 ARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILIN 580

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            F   G ++ A  L+  M S G
Sbjct: 581 RFSKLGMLDEAMGLYEKMVSCG 602



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 16/217 (7%)

Query: 36  VSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           + ++N ++ G LA  K  +  L L+K    +G  P+  T+S++IN  CKM  +S    + 
Sbjct: 432 IVTYNFLIEGYLAARKLIEA-LKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLF 490

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
            ++  S   P V              I YN ++  LC++  +++A+ LF +M++ N   +
Sbjct: 491 CKMKDSGIRPTV--------------IDYNALMTSLCREDSLEQARSLFQEMRNVNHNVD 536

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VV++  +I G   A D   AK L  EM    + P+ VTF+++++   K G +DEA  L +
Sbjct: 537 VVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYE 596

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            M+  G  P    +++LL G+ L G       L   M
Sbjct: 597 KMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P     +T+ID L K    D    ++ KM    V P   + +++   F   +  + A  +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGF 235
              M  +G   NV   N+++   C++G+ D+A SL   M ++   V PD  TYNTL++GF
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   R+  A+ LF +M+  G
Sbjct: 160 CKAKRLAEARVLFEAMKKGG 179



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 22/215 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG +      EAL ++ Y +    SP  ++ +++M+  L K +       LF ++  +G+
Sbjct: 440 EGYLAARKLIEALKLWKYAVESGFSPNSMT-YSVMINGLCKMQMLSVARGLFCKMKDSGI 498

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------KVCK- 117
            P +  ++ L+   C+   +     +   +       DVV+F  +I         K  K 
Sbjct: 499 RPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKE 558

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PDA+T++ +I+   K G +D+A  L+ KM      P VV + S+++G+ 
Sbjct: 559 LLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYG 618

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
              +  +   L  +M D+ V  +    + I+  LC
Sbjct: 619 LKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 129/267 (48%), Gaps = 31/267 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL ++    R +   P + + N++L         D    L + +      PD  ++  
Sbjct: 197 DEALQVY----RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCT 252

Query: 77  LINCFCKMGRVS--------------------------HGFVVLGRILRSCFTPDVVTFT 110
           +++  CK GRV                           +  V+LG          V  F 
Sbjct: 253 VLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFE 312

Query: 111 SL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
            +  +   PD+ +Y  +IDGL K G ++ A+ LF K+    V P+ V YTS+I G C AN
Sbjct: 313 KMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMAN 372

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
            +++A+ LF +M  +G  P+ VT+NV++D  CK G ++EA  L+  MI+ G  PD  TYN
Sbjct: 373 SFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 432

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           T++DG C + RV  A  LF  ME +GC
Sbjct: 433 TVMDGLCKSSRVEEALLLFNEMERLGC 459



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 123/247 (49%), Gaps = 22/247 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK--------HYDTVLSLFKRLNSTGLF 68
            EAL +F+ M R+  +P   S   I+LG   ++K          D    L KR+   G  
Sbjct: 445 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHV 504

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD+ T+S LI+  C + RV     +L  +++              + CKP  +T NT+I 
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVK--------------RQCKPTVVTQNTLIH 550

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK G + +A+E+   M      P+VVTY +++ G C A     A+ L  +M+ +G+ P
Sbjct: 551 GLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP 610

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NVVT+  ++  LCK  ++ EA  +   M   G  P+ FTY  L+ GFC  G+V+   +LF
Sbjct: 611 NVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLF 670

Query: 249 VSMESMG 255
             M   G
Sbjct: 671 GEMVCAG 677



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 31/270 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M R    P PV+ +N+M+    K    +    L K++   G  PD+ T++ 
Sbjct: 375 DDARELFADMNRRGCPPSPVT-YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK--------- 117
           +++  CK  RV    ++   + R   TP+  +  ++I          + C+         
Sbjct: 434 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFR 493

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD +TY+T+I GLC    VD A+ L   M  +  KP VVT  ++I G C
Sbjct: 494 LLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC 553

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A    EA+ +   M+  G  P+VVT+N ++   C+ G+ + A  LL  M+  G+ P+  
Sbjct: 554 KAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVV 613

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY  L+ G C   R+  A  +F  M+S GC
Sbjct: 614 TYTALVSGLCKANRLPEACGVFAQMKSSGC 643



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +  +NI++  L +N   D  + +F+++N   + PD +++ ILI+   K G+++    +  
Sbjct: 288 LRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           ++L S  TP  V +TSLI               GLC     D A+ELF  M  +   P+ 
Sbjct: 348 KLLHSGVTPSTVAYTSLIH--------------GLCMANSFDDARELFADMNRRGCPPSP 393

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY  +I   C      EA  L  +M++ G  P+VVT+N +MD LCK+ +++EA  L + 
Sbjct: 394 VTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNE 453

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M + G  P+  ++NT++ G C   +++ A
Sbjct: 454 MERLGCTPNRRSHNTIILGLCQQSKIDQA 482



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 23/230 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P    S + +L  L  +   D  L +++        P L T ++L+  FC  G+V     
Sbjct: 177 PLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKAR- 232

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA------KELFLKM 146
               +LR+   PD        + C PD ++Y T++DGLCK G V++A      +EL    
Sbjct: 233 ---ELLRA--MPD--------EECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSS 279

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
              +  P++  Y  VI G C  +  +EA ++F +M ++ V P+  ++ +++D L K GK+
Sbjct: 280 SSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKL 339

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++A +L   ++  GV P    Y +L+ G C+    + A+ELF  M   GC
Sbjct: 340 NDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGC 389



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 24/253 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ IF  M   H   P V  +N+++  L+K +  + V  + + +   G FPD +T + +
Sbjct: 28  EAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTI 85

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--KVC----------------KPD 119
           +   CK G++    +V+   +RS   P     +S +  ++C                  +
Sbjct: 86  LCGLCKAGKMDEAELVMDE-MRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVAN 144

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +  YN ++  LCK   VD A EL   M +K +     +  SV+ G   +   +EA +++ 
Sbjct: 145 SSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYR 204

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           E      +P +VT NV+++  C  G++D+A  LL  M      PD  +Y T+LDG C  G
Sbjct: 205 E---NRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAG 261

Query: 240 RVNHAKELFVSME 252
           RV  A  LF   E
Sbjct: 262 RVEEAVRLFGDRE 274



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 19/186 (10%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           G+FP     + +I  +C +GR      +   ++  C +P             PD   YN 
Sbjct: 5   GIFPAPLLFTSVIQGWCNVGRTFEAVKIFS-LMEECHSP------------YPD--VYNV 49

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +ID L K+   +  K++   M D+   P+  T+T+++ G C A   +EA+ +  EM  + 
Sbjct: 50  LIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRM 109

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P   T + +  ELC  G M+ A  LL++M       ++  YN ++   C   RV+ A 
Sbjct: 110 IPPYFATSSFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCKAARVDDAL 165

Query: 246 ELFVSM 251
           EL  +M
Sbjct: 166 ELARTM 171



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + + P  + +TSVI+G+C      EA ++F  +M++   P    +NV++D L K  +
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIF-SLMEECHSPYPDVYNVLIDSLSKRQE 59

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +    ++ +M+  G  PD+FT+ T+L G C  G+++ A+ +   M S
Sbjct: 60  TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRS 107



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         +F ++ S+G  P+L+T++ LI  FC  G+V  G  +
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 669

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--KNV 151
            G ++ +  +PD               + Y T+   LCK G   +A E+  + ++  ++ 
Sbjct: 670 FGEMVCAGISPD--------------HVVYGTLAAELCKSGRSARALEILREGRESLRSE 715

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
                 Y   + G   A     A     +M+  G  P       ++  LCK+G+  EA +
Sbjct: 716 AWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARA 775

Query: 212 LLD 214
           +L+
Sbjct: 776 VLE 778


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  I  +M       P   ++NIM+         +  + L K+++ +GL PD+ T+ +
Sbjct: 255 NKAEAILQHMFD-KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYIL 313

Query: 77  LINCFCKMGRVS-------------------------HGFVVLG-----RILRSCFTPDV 106
           LI  +CK+GR +                         HG+   G     R L      D 
Sbjct: 314 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 373

Query: 107 VTFTSL---IKVC-----------------------KPDAITYNTIIDGLCKQGFVDKAK 140
           + F      I +C                       +PD ++Y+T+I  LCK G V+ A 
Sbjct: 374 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAV 433

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
             F +M  + + PN++++TS+I G C   +W + + L  EM+++G+ P+ +  N IMD L
Sbjct: 434 YHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNL 493

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G++ EA    D++I  GV+P+  +YNTL+DG+C  G+++ + + F  M S+G
Sbjct: 494 CKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIG 548



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R    P    +FNI++   AK+   D  ++ F  +   GL PD+ ++S +I+  
Sbjct: 365 LLDLMIR-DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHIL 423

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK+GRV        +++    +P++++FTSLI                     +   PDA
Sbjct: 424 CKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 483

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I  NTI+D LCK+G V +A++ F  +    VKPNVV+Y ++I G+C+    +E+ + F  
Sbjct: 484 IFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDR 543

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  G++P+  T+N +++   KNG++++A +L   M +  V+  A T N +L G    GR
Sbjct: 544 MVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGR 603

Query: 241 VNHAKELFVSMESMG 255
           +  A+EL++ M   G
Sbjct: 604 IVAARELYMKMVDRG 618



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 145/313 (46%), Gaps = 71/313 (22%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           ++   +AL +FD +L     P  V +FN +L  +A+     +        +SLF  +  +
Sbjct: 27  SLGREDALNLFDELLP-QARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARS 85

Query: 66  G---LFPDLYTHSILINCFCKMGRVSH-----------GF----VVLGRILRSC------ 101
           G   +  + Y   ILI CFC +GR+             G+    V L ++++        
Sbjct: 86  GVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRT 145

Query: 102 ---------------FTPDVVTFTSLIKV------------------------CKPDAIT 122
                          +TPDV ++ +LIK                         C P+ ++
Sbjct: 146 DDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVS 205

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y+TIIDG  K+G VDKA  LF +M  +   P+VVTY+S+I G C A   N+A+ +   M 
Sbjct: 206 YSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMF 265

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           D+GV PN  T+N+++   C  G+++EA  LL  M   G++PD  TY  L+  +C  GR  
Sbjct: 266 DKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCA 325

Query: 243 HAKELFVSMESMG 255
            A+ +F SM   G
Sbjct: 326 EARSVFDSMVRKG 338



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 20/231 (8%)

Query: 24  DYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF---PDLYTHSIL 77
           D + R  P     P V S+N ++  L   K     L L   + + G +   P++ ++S +
Sbjct: 150 DMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTI 209

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ F K G V   + +   ++   F PDVVT++SLI              DGLCK   ++
Sbjct: 210 IDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLI--------------DGLCKAQAMN 255

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+ +   M DK V PN  TY  +IRG+C      EA RL  +M   G+QP+VVT+ +++
Sbjct: 256 KAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLI 315

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              CK G+  EA S+ D M++ G +P++  Y+ LL G+   G +   ++L 
Sbjct: 316 QYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 366



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ++ +    P V S+N ++         D  +  F R+ S GL PD +T++ L
Sbjct: 501 EAQDFFDMVIHI-GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N + K GRV         + R  F  DV       K C   AIT N I+ GL + G + 
Sbjct: 560 LNGYFKNGRVEDALA----LYREMFRKDV-------KFC---AITSNIILHGLFQAGRIV 605

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+EL++KM D+  +  + TY +V+ G C  +  +EA R+F ++  +  + +V TFN+++
Sbjct: 606 AARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVI 665

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + L K G++DEA SL   M+  G  P   TY+ ++      G +  + +LF+SME  GC
Sbjct: 666 NALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGC 724


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 135/262 (51%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL I D+M+      P V ++N ++  + K   ++  + + +++      P+  T++ 
Sbjct: 280 NDALDIVDFMIE-KGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338

Query: 77  LINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI---------------------K 114
           LI+  CK   +      L RIL S    PDV TF +LI                     K
Sbjct: 339 LISALCKENEIEAA-TDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKPD  TY+ +ID LC +  + +A  L  +M+      N V Y ++I G C +    +A
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDA 457

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +F +M   GV  + VT+N ++D LCKN +++EAS L+D MI  G++PD FTYN+LL  
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G +  A ++  +M S GC
Sbjct: 518 FCRVGDIEKAGDIVQTMASNGC 539



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L  +K+ D  + +F+ + + G  PD +T+SILI+  C   R+    ++
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  S               C  +A+ YNT+IDGLCK   ++ A+E+F +M+   V  
Sbjct: 426 LKEMESSG--------------CARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSR 471

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY ++I G C      EA +L  +M+ +G++P+  T+N ++   C+ G +++A  ++
Sbjct: 472 SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIV 531

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M  +G  PD FTY TL+ G C  GRV+ A +L  S++  G
Sbjct: 532 QTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKG 573



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 49/256 (19%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-------------------- 75
           VS+FN+++  L K       + + + + + GL PD  T +                    
Sbjct: 158 VSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKK 217

Query: 76  ---------------ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
                          +L+N FCK GRV      +  +    F+PD VTF           
Sbjct: 218 QMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTF----------- 266

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
              N++++G C+ G V+ A ++   M +K   P+V TY S+I G C   ++ +A  +  +
Sbjct: 267 ---NSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQ 323

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +   PN VT+N ++  LCK  +++ A+ L  +++  G+ PD  T+NTL+ G CL+  
Sbjct: 324 MILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKN 383

Query: 241 VNHAKELFVSMESMGC 256
            + A E+F  M++ GC
Sbjct: 384 QDIAMEMFEEMKNKGC 399



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 27/236 (11%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           HP PP  +    +L  L ++  +D++ +L K+L S+G  P+  T + LI  F     + +
Sbjct: 53  HPLPPNET----LLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIEN 108

Query: 90  GFVVLGRILRSCFTPDV----VTFTSLIKVCKP-----------------DAITYNTIID 128
              +L   L   F PD     +   +L++  K                  D  T+N +I 
Sbjct: 109 LLKILENEL--GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIK 166

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LCK   +  A  +  +M +  +KP+ +T+T++++GF    D N A ++  +M+  G   
Sbjct: 167 ALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLL 226

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             V+  V+++  CK G+++EA   +  + + G  PD  T+N+L++GFC  G VN A
Sbjct: 227 TNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDA 282



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 53/259 (20%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M  +  S   V+ +N ++  L KNK  +    L  ++   GL PD +T++ L+  F
Sbjct: 460 IFDQMELLGVSRSSVT-YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYF 518

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C++G +       G I+++  +            C+PD  TY T+I GLC+ G VD A +
Sbjct: 519 CRVGDIEKA----GDIVQTMASNG----------CEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 142 L-----------------------------------FLKMKDKNVKPNVVTYTSVIRGFC 166
           L                                   F +M +K+  P+ +T+  V RG C
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLC 624

Query: 167 YAND-WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                  EA    +EM+++G+ P   +F  + + LC     D    L++++++     + 
Sbjct: 625 NGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSER 684

Query: 226 FTYNTLLDGFCLTGRVNHA 244
            T  +++ GF    + N A
Sbjct: 685 ET--SMIRGFLKIRKFNDA 701



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 13/157 (8%)

Query: 108 TFTSLIKVCK-----PDAITYNTIIDGLCKQGFVDKAK-ELFLKMKDKNV--KPNVVTYT 159
           + T+L+K  K     P+A T+ T+I     Q F +  + E  LK+ +  +  KP+   Y 
Sbjct: 73  SITTLLKQLKSSGSIPNATTFATLI-----QSFTNFHEIENLLKILENELGFKPDTNFYN 127

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
             +      N     + L  +M+++G+  +V TFNV++  LCK  ++  A  +L+ M  H
Sbjct: 128 IALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANH 187

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G++PD  T+ TL+ GF   G +N A ++   M   GC
Sbjct: 188 GLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGC 224


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  IF  M+      P V S++I++    K         L+K++      P++ T++ 
Sbjct: 463 HQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            +N   + GR++    V   ++ +  +PDV+T+++LI                     + 
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+A+TYN ++ GLCK+   D+A ELF KM ++   P+ VTYT+++ GFC      +A 
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAV 642

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM+ +G  P+VV +N ++    + GK  EA  L  +M+    +PD  ++N ++DG 
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702

Query: 236 CLTGRVNHAKELFVSMES-MGC 256
               R++ A E+F  ME   GC
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGC 724



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 17/219 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +N +L  L K K      ++F  + S   F PD+ ++SILI+ FCK+         LGR 
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDE-------LGRA 501

Query: 98  LRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
            +         +  +I + C P+  TYN  ++GL ++G +  A+ ++ +M      P+V+
Sbjct: 502 EK--------LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVI 553

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY+++I GF  A   ++A  LF  M+ +G +PN VT+N ++  LCK  K DEA  L   M
Sbjct: 554 TYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ G  PD  TY TLL GFC  G++  A E+F  M S G
Sbjct: 614 VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 652



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 26/249 (10%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S  PV  +++++  L ++   D        +    + P   T   +I   CK GRV    
Sbjct: 337 SSQPV--YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSAL 394

Query: 92  VVLGRILRSCFTPDVVTFTSLI-KVCKPDAIT----------------------YNTIID 128
            +L  +++  + PD+ T + LI ++CK D I                       YN++++
Sbjct: 395 SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLN 454

Query: 129 GLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            LCK   V +A  +F  M  +++  P+VV+Y+ +I GFC  ++   A++L+ +M+D    
Sbjct: 455 SLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 514

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PNV T+N  ++ L + G++ +A  + + M+  G  PD  TY+TL+ GF L  + + A EL
Sbjct: 515 PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHEL 574

Query: 248 FVSMESMGC 256
           F +M S GC
Sbjct: 575 FETMISRGC 583



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 23/206 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F+ M+     P  V+ +N +L  L K    D    LF+++   G  PD  T++ 
Sbjct: 569 DQAHELFETMISRGCRPNAVT-YNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           L+  FC +G++     V   ++     PDVV +  L+K                      
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           CKPD +++N +IDGL K   +D A E+F +M +D    P++VTY S+I G C     +EA
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 747

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDEL 200
            ++F E+    + P+   FNV+++ +
Sbjct: 748 MKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 94/195 (48%), Gaps = 14/195 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +  +G  PD   +S ++   CK+  +   F +   +      P             
Sbjct: 256 LFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAP------------- 302

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            + + +   + GLCK G +++A E    M++ ++  +   Y  +IR    +   ++A+  
Sbjct: 303 LNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEA 361

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
            +E+  + +QP+  T + ++ ELCK G++D A SLL+ MI+ G  PD  T++ L++  C 
Sbjct: 362 CLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCK 421

Query: 238 TGRVNHAKELFVSME 252
             ++  A+E    M+
Sbjct: 422 ADKIQEAQEFLQGMD 436



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D  TYN ++D L +   + +A ++F KM  + V PN  TY  +++  CY  + +EA R
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F EM+D+G +P+   +  + + L   GK  E S +    ++  V  +      LL  F 
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 237 LTGRVNHAKELFVSMESMGC 256
           +  +   A +LF +M   GC
Sbjct: 246 IQDKAIEASKLFRAMVKSGC 265



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 24/252 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL  F + L+       V ++N +L  L +++       +F+++ + G+ P+ +T+++
Sbjct: 111 GEALTFFRW-LQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAV 169

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA------------ITYN 124
           L+   C            G ++   F P    +  + +  K               +   
Sbjct: 170 LVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKR 229

Query: 125 TIIDGLCKQGFV------DKAKE---LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             ++ + K+  +      DKA E   LF  M     KP+   Y+ ++   C   + +EA 
Sbjct: 230 VAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAF 289

Query: 176 RLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +LF+EM  +   P N V +   +  LCK+GK+++A      M Q  +      Y+ L+  
Sbjct: 290 KLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRL 348

Query: 235 FCLTGRVNHAKE 246
              +GR++ A+E
Sbjct: 349 LIESGRIDKAEE 360



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++      ++ D  +  F  +   G  P    +  +  C    G+      V
Sbjct: 162 PNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRV 221

Query: 94  LGRILRSCFTPDVVT--------------------FTSLIKV-CKPDAITYNTIIDGLCK 132
            GR L      +++                     F +++K  CKPDA  Y+ ++   CK
Sbjct: 222 FGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCK 281

Query: 133 QGFVDKAKELFLKMKDKNVKP-NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
              +D+A +LFL+M  ++  P N V +T+ + G C +    +A       M + +  +  
Sbjct: 282 LENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEA-CRTMQESLSSSQP 340

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +++++  L ++G++D+A      +    ++P + T ++++   C  GRV+ A  L  +M
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 252 ESMG 255
              G
Sbjct: 401 IKRG 404



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%)

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A   F  ++ +N K +V TY  ++       D  +A ++F +M+ QGV PN  T+ V++
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              C     DEA      M+  G +P +  Y  + +    TG+      +F
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVF 222



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTH 74
           P EA  +F  M+     P  VS  NIM+  L+K K  D  + +F+R+    G  PDL T+
Sbjct: 673 PGEAKQLFQVMVSRQCKPDTVS-HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 731

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           + LI   C   R+S    V   I R   +PD   F  L++  K
Sbjct: 732 NSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIK 774



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           T  +VI+   +  D  EA   F  +  +  + +V T+N ++D+L ++  + +A  + + M
Sbjct: 99  TVGAVIK---HLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKM 155

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  GV P+ FTY  L+   C     + A   F  M   G
Sbjct: 156 VAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKG 194


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++         D+ L L + + +TG  PD+ T++ LI+  CK GRV     +
Sbjct: 8   PNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRL 67

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
            G +      PDV+T++ LI   CK                    PD +T+ T+++G C 
Sbjct: 68  FGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCN 127

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A+ L  ++   +  P+V TYTS++ GFC      EA R+   M     QPNVV 
Sbjct: 128 AGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVI 187

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  C  GK   A  LL+ M+ +GV+P+A TY +L+ GFC TG +  A ++   +E
Sbjct: 188 YTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLE 247



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++++N ++  L K      V  LF  + +    PD+ T+S LI  FCK+ R++    +
Sbjct: 43  PDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 102

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L+    PDVVTF +L++                      C PD  TY +++DG CK
Sbjct: 103 FDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCK 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  +  +M     +PNVV YT++I  FC A     A +L  EM+  GVQPN +T
Sbjct: 163 VKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAIT 222

Query: 193 FNVIMDELCKNGKMDEASSLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  ++   C  G ++EA  +L+ L      + D F Y  ++DG C TGR++ A EL  ++
Sbjct: 223 YRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 282

Query: 252 ESMG 255
           +  G
Sbjct: 283 KQSG 286



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 14/191 (7%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           G+ P++ T++ LI+ FC    V    +++          + +T T     C PD  TYNT
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLM----------EEMTATG----CLPDINTYNT 50

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGLCK G V +   LF +MK K   P+V+TY+ +I GFC  +  N A  LF +M+ Q 
Sbjct: 51  LIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA 110

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+VVTF  +++  C  G +D+A  LL+ ++     PD +TY +L+DGFC   R+  A 
Sbjct: 111 ALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAH 170

Query: 246 ELFVSMESMGC 256
            +   M    C
Sbjct: 171 RVLKRMAKGEC 181



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 38/216 (17%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K K       + KR+      P++  ++ LI+ FC  G+ +  + +
Sbjct: 148 PDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKL 207

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           L  ++ +   P+ +T+ SLI                      + CK D   Y  ++DGLC
Sbjct: 208 LEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLC 267

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNV 190
           + G +  A EL   +K     P    Y ++IRG               EM + +  +PN 
Sbjct: 268 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRG---------------EMTLSRKGRPNA 312

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
             +  ++ EL + G+ ++A++L D ++ +      F
Sbjct: 313 KVYEAVIQELAREGRHEKANALSDELLGNKASKTRF 348


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L KN+ +D    LFK +   GL P+  T++ILI+  CK G +     +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++        V  + SLI   CK                    P A +Y+ +I GLC+
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +    EL  +M ++ +  N  T+T++I GFC     +EA RLF +M+D  V PN VT
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVT 515

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+++  C  G + +A  L D M++ G++PD +TY +L+ G CLT  V+ A E    +E
Sbjct: 516 FNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLE 575

Query: 253 S 253
           +
Sbjct: 576 N 576



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N+++  L KN      + +   + + G+  D  T+  L+  FC+M  +     +   ++
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R  F P     + +I              D L K+  V++A  L  K+ D  + PNV  Y
Sbjct: 296 RLGFVPSEANCSFMI--------------DELRKKELVEEAFSLACKLGDLGMVPNVFAY 341

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I   C    +++A RLF EM  +G++PN VT+ +++  LCK G +++A  L D M  
Sbjct: 342 NALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRD 401

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G++   + YN+L++G+C  G ++ A+ L   M   G
Sbjct: 402 KGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E  C+    ++     P    +  M+  L+K ++    L+ + ++   G  P+  TH++L
Sbjct: 635 EKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVL 694

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------TSLIKVCK 117
           IN  CK G +    ++   +L     P+  T+                    +++++   
Sbjct: 695 INNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
              +++N +I GLCK G + +A +L  K+ +    P+ ++Y+++I   C   D N+A  L
Sbjct: 755 ASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFEL 814

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+ +G++P+VV +N+ +     +G+ D+A  +   MI+ GV+P+  TY  LL G  L
Sbjct: 815 WNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISL 874



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 34/262 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EA  +FD M+  +  P  V+ FN+M+   CL  N        L+ ++   GL PD YT+
Sbjct: 495 DEAARLFDKMIDSNVIPNEVT-FNVMIEGYCLVGNIR--KAFQLYDQMVEMGLKPDNYTY 551

Query: 75  SILINCFCKMGRVS-------------------------HGFVVLGRILRSCFTPDVVTF 109
             LI+  C    VS                         +GF   GR   +    D +  
Sbjct: 552 RSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMA- 610

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
              ++  K D +++  I+    KQ   +K+  LF +MK++ VKP+ + YT +I       
Sbjct: 611 ---VRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEE 667

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +  +A   + +M+  G  PN VT  V+++ LCK+G +  A  L   M+   V P+ FTYN
Sbjct: 668 NMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 727

Query: 230 TLLDGFCLTGRVNHAKELFVSM 251
             LD F   G +  AK+L  +M
Sbjct: 728 CFLDYFATEGDMEKAKDLHSAM 749



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K + +     LF ++  +G+  D Y ++  I  +C+   +     ++ R+    
Sbjct: 169 ILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES-- 226

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       +  K  A+ YN ++ GLCK   V +A E+   M +  V  + VTY ++
Sbjct: 227 ------------EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + GFC   +   A R+  +M+  G  P+    + ++DEL K   ++EA SL   +   G+
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+ F YN L+D  C   R + A  LF  M   G
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T + I+  L K      A++LF KM    V  +   YT+ IR +C + + + A+ L + M
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +GV+ + V +NV+M  LCKN ++ EA  + ++M+  GV  D  TY TL+ GFC    +
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 242 NHAKELFVSMESMG 255
             A  +   M  +G
Sbjct: 285 EMALRITHDMIRLG 298


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHS 75
            E++ +F  M  +  SP  V +FN +L  + K         LF + L++ G+ PD YT +
Sbjct: 182 QESIKVFKTMKEIGVSPS-VVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFN 240

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FC    V  GF          F  ++  F      C PD +TYNT++DGLC+ G 
Sbjct: 241 ILIRGFCMNSMVDEGF---------WFFKEMSRFK-----CDPDVVTYNTLVDGLCRAGK 286

Query: 136 VDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V  A  +   M  K  N+ PNVVTYT++IRG+C   D  EA  L  EM+ +G++PN +T+
Sbjct: 287 VKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITY 346

Query: 194 NVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           N ++  LC+  K+D+   +L+ M+   G  PD  T NTL+   C  G++  A  +F  M 
Sbjct: 347 NTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMS 406

Query: 253 SM 254
            +
Sbjct: 407 EL 408



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 33/266 (12%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML  +   P   +FNI++     N   D     FK ++     PD+ T++ L++  
Sbjct: 222 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 281

Query: 82  CKMGRV--SHGFVVLGRILRSC-FTPDVVTFTSLIK-VC--------------------K 117
           C+ G+V  +H  VV G + +S   +P+VVT+T+LI+  C                    K
Sbjct: 282 CRAGKVKIAHN-VVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 340

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+ ITYNT+I GLC+   +DK KE+   M  D    P+  T  ++I+  C      EA  
Sbjct: 341 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS 400

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDAFTYN 229
           +F +M +  VQP+  T++V++  LC+ G    A    D + +        G +P    YN
Sbjct: 401 VFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYN 460

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMG 255
            + +  C  G+   A+ +F  +   G
Sbjct: 461 PMFEYLCSNGKTKKAERVFRQLMKRG 486



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 15/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++        +   + +FK +   G+ P + T + L++   K GR S    +   +L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                 D    T       PD  T+N +I G C    VD+    F +M      P+VVTY
Sbjct: 228 ------DTYGVT-------PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTY 274

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            +++ G C A     A  +   M+ +   + PNVVT+  ++   C    M EA SLL  M
Sbjct: 275 NTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEM 334

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  G++P+  TYNTL+ G C   +++  KE+   M
Sbjct: 335 VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGM 369



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +Y  +I+ L +   ++ A+     ++ K+   VK     + S+IR + +A  + E+ ++F
Sbjct: 129 SYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVF 188

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCL 237
             M + GV P+VVTFN ++  + K G+   A  L D M+  +GV PD +T+N L+ GFC+
Sbjct: 189 KTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCM 248

Query: 238 TGRVNHAKELFVSMESMGC 256
              V+     F  M    C
Sbjct: 249 NSMVDEGFWFFKEMSRFKC 267



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 31/259 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSI 76
           EAL +   M+     P  ++ +N ++  L + +  D +  + + +   G F PD  T + 
Sbjct: 326 EALSLLAEMVSRGLKPNKIT-YNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNT 384

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI   C MG++   F V  ++      PD  T++ L++                      
Sbjct: 385 LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 444

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                  CKP    YN + + LC  G   KA+ +F ++  +  + +  +Y ++I G C  
Sbjct: 445 ILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCRE 503

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
                   L + M+ +   P+  T+ +++D L K G    A   L+ M++    P    +
Sbjct: 504 GTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIF 563

Query: 229 NTLLDGFCLTGRVNHAKEL 247
           +++L      G  + +  L
Sbjct: 564 HSILAALVEKGCAHESASL 582



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N M   L  N        +F++L   G   D  ++  LI   C+ G    GF +
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGT-QDPPSYKTLILGHCREGTPEAGFDL 512

Query: 94  LGRILRSCFTPDVVTF-----------------TSLIKVCK----PDAITYNTIIDGLCK 132
           L  +LR  F PD  T+                  SL K+ K    P    +++I+  L +
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 572

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G   ++  L   M ++ ++ N+   T  +R   Y +   +   + I ++ +     +V 
Sbjct: 573 KGCAHESASLVKLMLERRIRQNIDLSTHTVR-LLYKSGLQDKAFMTIGLLYEN--GYLVK 629

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              ++  LC++ K+ EA  +L   ++     D    +T++ G C   +V+ A  L+  + 
Sbjct: 630 MEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELV 689

Query: 253 SMG 255
             G
Sbjct: 690 EKG 692



 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 23/215 (10%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL---SLFKRLNSTGLFPDL 71
           TP     +   MLR     P   ++ +M+  L K    D VL   SL K L S+ L    
Sbjct: 505 TPEAGFDLLVLMLR-RDFVPDAETYGLMIDGLLKKG--DPVLAHKSLEKMLKSSHLPTTA 561

Query: 72  YTHSIL---INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA-------- 120
             HSIL   +   C     S   ++L R +R        T   L K    D         
Sbjct: 562 IFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLL 621

Query: 121 ------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                 +    ++  LC+   + +A+++ L   +K    ++   ++VI G C A+  +EA
Sbjct: 622 YENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEA 681

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
             L+ E++++G+Q  +     +   L   G+++EA
Sbjct: 682 FALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEA 716


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 24/248 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LRM P+   + ++N +L  + KN  +     L   ++  GL P+  T++ILI+  CK G 
Sbjct: 331 LRMVPN---IFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGM 387

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNT 125
           +     +L R+        V  + SLI  C                      P+A +Y+ 
Sbjct: 388 MDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSP 447

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GLC++G +  A EL  KM +K V  N  T+T++I GFC A   +EA RLF +M +  
Sbjct: 448 VIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESN 507

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++PN VTFN +++  C  G + +A  L D M+  G+ PD +TY +L+ G CLT   + AK
Sbjct: 508 LEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAK 567

Query: 246 ELFVSMES 253
           E    +E+
Sbjct: 568 EFVADLEN 575



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 22/239 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           SF I++    K    +    LF+ +   G+ PD   H+ +IN + K G +         +
Sbjct: 619 SFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEM 678

Query: 98  LRSCFTPDVVTFTSLIK-------------VCK--------PDAITYNTIIDGLCKQGFV 136
           +     P+ VT+T+L+              +CK        P++ T+N  +D    +G +
Sbjct: 679 IADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNL 738

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + AK+L+  M  +    N+V+  ++I+GFC      EA  L     + G  P+ ++++ +
Sbjct: 739 ETAKDLYFAML-QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTV 797

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + ELCK G ++EA  L + M+  GV+PD   YN L+    + G  +    +++ M   G
Sbjct: 798 IHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKG 856



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 16/230 (6%)

Query: 28  RMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           RM      VS+  +N+++  L KN+     + +   + + G+  D  T   L+  FC+  
Sbjct: 222 RMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTE 281

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +     + G + R  F P     + ++              DGL K+G V++A  L  +
Sbjct: 282 ELDMALEMTGDMARLGFVPSEANCSFML--------------DGLRKKGRVEEAFRLACQ 327

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           + +  + PN+  Y +++   C    ++EA RL  EM D+G++PN VT+ +++  LCK G 
Sbjct: 328 LGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGM 387

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MD+A  +LD M + GVR   + YN+L++  C    ++ A      M  +G
Sbjct: 388 MDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIG 437



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 20/221 (9%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           M+   +K  +    L+ +  + + G  P+  T++ L+N  CK   +S   ++   +L S 
Sbjct: 658 MINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASH 717

Query: 102 FTPDVVTFT--------------------SLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           F P+  TF                     ++++    + ++ NT+I G CK G + +A +
Sbjct: 718 FLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFLANIVSVNTLIKGFCKVGQIQEAID 777

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +  +    P+ ++Y++VI   C   D NEA  L+ EM+ +GV+P++V +N+++    
Sbjct: 778 LISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCN 837

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G+ D+   +   M++ GV+P+  T+  L  G  L  + N
Sbjct: 838 IHGESDKCLGIYIDMVKKGVQPNWHTHRALFVGTSLMSKGN 878



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 106/232 (45%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +S++ ++  L +       + L +++   G+  + YT + LIN FCK  ++     +
Sbjct: 440 PNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRL 499

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------VCK---PDAITYNTIIDGLCK 132
             ++  S   P+ VTF ++I+                  +C+   PD  TY ++I GLC 
Sbjct: 500 FNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCL 559

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                KAKE    +++     N  + T+++ GFC      EA  ++ EM   G + ++++
Sbjct: 560 TDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLIS 619

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           F +I+    K    +++  L   M + GVRPD   +  +++ +   G +  A
Sbjct: 620 FTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQA 671



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 24/257 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  +F+ M   +  P  V+   ++ G CL  +        L+ ++   GL PD YT+ 
Sbjct: 494 DEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGD--IRKAFQLYDQMMCRGLTPDNYTYR 551

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------ 116
            LI+  C     S     +  +  +C   +  + T+L+   C                  
Sbjct: 552 SLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMW 611

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             K D I++  I+    KQ   +K+  LF +MK+K V+P+ V +T +I  +    +  +A
Sbjct: 612 GGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQA 671

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              + EM+  G  PN VT+  +++ LCK+  +  A  L   M+     P+++T+N  LD 
Sbjct: 672 LNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDY 731

Query: 235 FCLTGRVNHAKELFVSM 251
           F   G +  AK+L+ +M
Sbjct: 732 FATEGNLETAKDLYFAM 748



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%)

Query: 107 VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           V   SL     PD  T + I+  L K      A+ LF  M    V  +   YT+ IR +C
Sbjct: 149 VLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYC 208

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              + + AK L   M D+G + + V +NV++  LCKN ++ EA  + + M+  GV  D  
Sbjct: 209 EVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEV 268

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           T  TL+ GFC T  ++ A E+   M  +G
Sbjct: 269 TCRTLVYGFCRTEELDMALEMTGDMARLG 297



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + S N ++    K       + L  R    G FPD  ++S +I+  CK G ++    +  
Sbjct: 756 IVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWN 815

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L     PD+V +  LI+ C                 G  DK   +++ M  K V+PN 
Sbjct: 816 EMLYKGVKPDIVAYNILIRWCNI--------------HGESDKCLGIYIDMVKKGVQPNW 861

Query: 156 VTYTSVIRG 164
            T+ ++  G
Sbjct: 862 HTHRALFVG 870


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R   SP  VS +N ++  L K K     + L   + + G FP+  T + L
Sbjct: 16  EAMGLIREMGRKSVSPDIVS-YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTL 74

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++  CK GR+     +L  + +  F  DVV               Y T+I G C  G +D
Sbjct: 75  MDGLCKDGRMDEAMELLEAMKKKGFDADVVL--------------YGTLISGFCNNGNLD 120

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           + KELF +M  K +  NVVTY+ ++ G C    W EA  +   M + G+ P+VVT+  ++
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK+G+   A  LL+LM++ G  P   TYN LL G C  G V  A ++   M   G
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 238



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            NI+L  L +N      + L + +    + PD+ +++ LIN  CK  ++     +L  + 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            +               C P+++T  T++DGLCK G +D+A EL   MK K    +VV Y
Sbjct: 61  AAG--------------CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLY 106

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I GFC   + +  K LF EM+ +G+  NVVT++ ++  LC+ G+  EA+++L+ M +
Sbjct: 107 GTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE 166

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           HG+ PD  TY  L+DG C  GR  HA +L   M   G
Sbjct: 167 HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 203



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 134/261 (51%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EAL +F+ M        P V +FN+++G L K       + + +++   G   +L T++
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
           +L+    K G++     +  ++L   F P+  T++ LI   CK                 
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 379

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P    YNT++  LCK+G +++AK LF +M + N +P+++++ ++I G   A D+   
Sbjct: 380 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFV 439

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L ++M++ G++P+ +TF+ +++ L K G++DEA S L+ M+  G  PDA  Y++LL G
Sbjct: 440 KELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKG 499

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G       L   M + G
Sbjct: 500 LSSKGDTTEIINLLHQMAAKG 520



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M   H   P V ++  ++  L K+      + L   +   G  P   T+++L
Sbjct: 156 EANTVLNAMAE-HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 214

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           ++  CK G V   F +L  ++      DVVT+ +L+K +C                    
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 274

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +P+  T+N +I GLCK+G + KA ++  KM  K    N+VTY  ++ G   A    EA
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L+ +++D G  PN  T+++++D  CK   ++ A  L   M  HG+ P  F YNTL+  
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 394

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G +  AK LF  M +  C
Sbjct: 395 LCKEGSLEQAKSLFQEMGNANC 416



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 21/220 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N++LG   K       + L+K++   G  P+ +T+SILI+ FCKM  ++    +   +
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 376

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P +  + +L+                       C+PD I++NT+IDG  K G  
Sbjct: 377 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDF 436

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
              KEL +KM +  ++P+ +T++++I       + +EAK     M+  G  P+ + ++ +
Sbjct: 437 QFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSL 496

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  L   G   E  +LL  M   G   D    +T+L   C
Sbjct: 497 LKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N+++  LC+NG + EA  L+  M +  V PD  +YNTL++G C   ++  A  L + ME
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 253 SMGC 256
           + GC
Sbjct: 61  AAGC 64


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V S+N ++    + K  +  L L   +  +G    L T  ILI+ FCK G+
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNT 125
           +      L  +       D+V +TSLI+  C                     P AITYNT
Sbjct: 228 MDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G CK G + +A E+F  M ++ V+PNV TYT +I G C      EA +    M+++ 
Sbjct: 288 LIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKD 347

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +PN VT+N+I+++LCK+G + +A  +++LM +   RPD  TYN LL G C  G ++ A 
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407

Query: 246 ELFVSM 251
           +L   M
Sbjct: 408 KLLYLM 413



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 117/235 (49%), Gaps = 21/235 (8%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           ++  L ++++++   S ++++  T  F +  + S L+ C+ +M +    F VL  +L+  
Sbjct: 78  LMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG 137

Query: 102 FTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
           F  +V     L+K +C+                    PD  +YNT+I G C+   ++KA 
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL  +MK      ++VT+  +I  FC A   +EA     EM   G++ ++V +  ++   
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGF 257

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C  G++D   +L D +++ G  P A TYNTL+ GFC  G++  A E+F  M   G
Sbjct: 258 CDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL   + M+     P  V+ +NI++  L K+      + + + +      PD  T++IL
Sbjct: 335 EALQPLNLMIEKDEEPNAVT-YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 78  INCFCKMGRVSHGFVVLGRILR-SCFT-PDVVTFTSLIK-VCKP---------------- 118
           +   C  G +     +L  +L+ S +T PDV+++ +LI  +CK                 
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 119 ----DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
               D +T N +++   K G V+KA EL+ ++ D  +  N  TYT++I GFC     N A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L  +M    +QP+V  +N ++  LCK G +D+A  L + M +    PD  ++N ++DG
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G +  A+ L V M   G
Sbjct: 574 SLKAGDIKSAESLLVGMSRAG 594



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 23/234 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ I++    K    D  +   K +   GL  DL  ++ LI  FC  G +  G  +   +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
           L    +P  +T+ +LI+  CK                    P+  TY  +IDGLC  G  
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKT 333

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +    M +K+ +PN VTY  +I   C      +A  +   M  +  +P+ +T+N++
Sbjct: 334 KEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 197 MDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  LC  G +DEAS LL LM++      PD  +YN L+ G C   R++ A +++
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIY 447



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 26/262 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHS 75
           +A+ I + M +    P  ++ +NI+LG L      D    L   +  +S+   PD+ +++
Sbjct: 370 DAVEIVELMKKRRTRPDNIT-YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYN 428

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
            LI+  CK  R+     +   ++      D VT   L+                      
Sbjct: 429 ALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDS 488

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K+ + ++ TY  +IDG CK G ++ AK L  KM+   ++P+V  Y  ++   C     ++
Sbjct: 489 KIVR-NSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A RLF EM      P+VV+FN+++D   K G +  A SLL  M + G+ PD FTY+ L++
Sbjct: 548 AWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            F   G ++ A   F  M   G
Sbjct: 608 RFLKLGYLDEAISFFDKMVDSG 629



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 21/234 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I+D ++    +   V++ NI+L    K    +  + L+K+++ + +  +  T++ 
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499

Query: 77  LINCFCKMG--RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +I+ FCK G   V+ G +   R+                   +P    YN ++  LCK+G
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRV----------------SELQPSVFDYNCLLSSLCKEG 543

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A  LF +M+  N  P+VV++  +I G   A D   A+ L + M   G+ P++ T++
Sbjct: 544 SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYS 603

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-GRVNHAKEL 247
            +++   K G +DEA S  D M+  G  PDA   +++L  +C++ G  +   EL
Sbjct: 604 KLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLTEL 656



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R+    P V  +N +L  L K    D    LF+ +     FPD+ + +I+I+   K G 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     +L  + R+  +PD+               TY+ +I+   K G++D+A   F KM
Sbjct: 580 IKSAESLLVGMSRAGLSPDL--------------FTYSKLINRFLKLGYLDEAISFFDKM 625

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGK 205
            D   +P+     SV++      + ++   L  +++D+ +  +      +MD +C  +  
Sbjct: 626 VDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSAN 685

Query: 206 MDEASSLL 213
           MD A  LL
Sbjct: 686 MDLAKRLL 693



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A   + KM + +   N V+ + ++  +        A  +   M+ +G   NV   N+++ 
Sbjct: 91  AFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLK 150

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LC+N +  +A SLL  M ++ + PD F+YNT++ GFC    +  A EL   M+  GC
Sbjct: 151 GLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 137/290 (47%), Gaps = 57/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D MLR     P V ++ ++L  + K+  +   + +   + + G  P++ T++++
Sbjct: 155 DALSLLDDMLR-RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVI 213

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           IN  C+  RV     +L R+    F PD V++T+++K                      C
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273

Query: 117 KPDAITY-----------------------------------NTIIDGLCKQGFVDKAKE 141
            P+ +T+                                   N +I+ +CKQG VD A E
Sbjct: 274 VPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFE 333

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
               M      P+ ++YT+V++G C A  W +AK L  EM+ +   PN VTFN  +  LC
Sbjct: 334 FLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILC 393

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + G +D+A  L++ M ++G      TYN L++GFC+ GRV+ A ELF S+
Sbjct: 394 QKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL 443



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 24/246 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           +P  V ++N ++    +    D    L   + S  + PD YT++ LI   C  GRV    
Sbjct: 101 APVDVFAYNTLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPLIRGLCDRGRVGDAL 157

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +L  +LR    P VVT+T L+                     K C P+ +TYN II+G+
Sbjct: 158 SLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGM 217

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++  VD A+++  ++     +P+ V+YT+V++G C A  W + + LF EM++    PN 
Sbjct: 218 CREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNE 277

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTF++++   C+ G ++ A  +LD M +HG   +    N +++  C  GRV+ A E   +
Sbjct: 278 VTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNN 337

Query: 251 MESMGC 256
           M S GC
Sbjct: 338 MGSYGC 343



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 21/242 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P P SS    L  L           L +R  S G  PD+Y  + LI   C+ GR S    
Sbjct: 35  PSPASS---RLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAAR 91

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK-----------------PDAITYNTIIDGLCKQG 134
           VL     S    DV  + +L+   C+                 PDA TY  +I GLC +G
Sbjct: 92  VLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRG 151

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V  A  L   M  +  +P+VVTYT ++   C ++ + +A ++  EM  +G  PN+VT+N
Sbjct: 152 RVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYN 211

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           VI++ +C+  ++D+A  +L+ +  +G +PD  +Y T+L G C   R    + LF  M   
Sbjct: 212 VIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVEN 271

Query: 255 GC 256
            C
Sbjct: 272 NC 273



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 17/223 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN  +  L +    D  + L +++   G    + T++ L+N FC  GRV     
Sbjct: 379 PPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALE 438

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +               F SL   C+P+ ITY T++ GLC    +D A EL  +M   +  
Sbjct: 439 L---------------FNSL--PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCP 481

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            NVVT+  ++  FC      EA  L  +MM+ G  PN++TFN ++D + ++   +EA  L
Sbjct: 482 LNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALEL 541

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  ++  G+  D  TY++++D      R+  A ++F +++ MG
Sbjct: 542 LHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMG 584



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++         D+ L LF   NS    P+  T++ L+   C   R+     +L 
Sbjct: 417 IVTYNALVNGFCVQGRVDSALELF---NSLPCEPNTITYTTLLTGLCHAERLDAAAELLA 473

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++++    +VVTF  L+                       C P+ IT+NT++DG+ +  
Sbjct: 474 EMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDC 533

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL   +  K +  + +TY+S++      +   EA ++F  + D G++P  V +N
Sbjct: 534 NSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYN 593

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK  + D A      M+ +   P+  TY  L++G    G +  A+ +   + S 
Sbjct: 594 KILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSR 653

Query: 255 G 255
           G
Sbjct: 654 G 654



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 95/212 (44%), Gaps = 21/212 (9%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++  +L  L   +  D    L   +       ++ T ++L++ FC+ G V   
Sbjct: 444 PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEA 503

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
             ++ +++    TP+++TF +L+                     K    D ITY++I+D 
Sbjct: 504 IELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDV 563

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L ++  +++A ++F  ++D  ++P  V Y  ++   C   + + A   F  M+     PN
Sbjct: 564 LSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPN 623

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
             T+ ++++ L + G + EA  +L  +   GV
Sbjct: 624 ESTYVILIEGLAREGLLKEARYVLSELCSRGV 655



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +   M+  H   P + +FN +L  + ++ + +  L L   L S G+  D  T+S 
Sbjct: 501 EEAIELVQQMME-HGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSS 559

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGF 135
           +++   +  R+                  V  F ++  +  +P A+ YN I+  LCK+  
Sbjct: 560 IVDVLSREDRIEEA---------------VQMFHAVQDMGMRPKAVMYNKILSALCKRCE 604

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            D+A + F  M   +  PN  TY  +I G        EA+ +  E+  +GV
Sbjct: 605 TDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHS 75
            E++ +F  M  +  SP  V +FN +L  + K         LF + L++ G+ PD YT +
Sbjct: 182 QESIKVFKTMKEIGVSPS-VVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFN 240

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FC    V  GF          F  ++  F      C PD +TYNT++DGLC+ G 
Sbjct: 241 ILIRGFCMNSMVDEGF---------WFFKEMSRFK-----CDPDVVTYNTLVDGLCRAGK 286

Query: 136 VDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V  A  +   M  K  N+ PNVVTYT++IRG+C   D  EA  L  EM+ +G++PN +T+
Sbjct: 287 VKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITY 346

Query: 194 NVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           N ++  LC+  K+D+   +L+ M+   G  PD  T NTL+   C  G++  A  +F  M 
Sbjct: 347 NTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMS 406

Query: 253 SM 254
            +
Sbjct: 407 EL 408



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 33/266 (12%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML  +   P   +FNI++     N   D     FK ++     PD+ T++ L++  
Sbjct: 222 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 281

Query: 82  CKMGRV--SHGFVVLGRILRSC-FTPDVVTFTSLIK-VC--------------------K 117
           C+ G+V  +H  VV G + +S   +P+VVT+T+LI+  C                    K
Sbjct: 282 CRAGKVKIAHN-VVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 340

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+ ITYNT+I GLC+   +DK KE+   M  D    P+  T  ++I+  C      EA  
Sbjct: 341 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS 400

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDAFTYN 229
           +F +M +  VQP+  T++V++  LC+ G    A    D + +        G +P    YN
Sbjct: 401 VFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYN 460

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMG 255
            + +  C  G+   A+ +F  +   G
Sbjct: 461 PMFEYLCSNGKTKKAERVFRQLMKRG 486



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 15/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++        +   + +FK +   G+ P + T + L++   K GR S    +   +L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                 D    T       PD  T+N +I G C    VD+    F +M      P+VVTY
Sbjct: 228 ------DTYGVT-------PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTY 274

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            +++ G C A     A  +   M+ +   + PNVVT+  ++   C    M EA SLL  M
Sbjct: 275 NTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEM 334

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  G++P+  TYNTL+ G C   +++  KE+   M
Sbjct: 335 VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGM 369



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +Y  +I+ L +   ++ A+     ++ K+   VK     + S+IR + +A  + E+ ++F
Sbjct: 129 SYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVF 188

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCL 237
             M + GV P+VVTFN ++  + K G+   A  L D M+  +GV PD +T+N L+ GFC+
Sbjct: 189 KTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCM 248

Query: 238 TGRVNHAKELFVSMESMGC 256
              V+     F  M    C
Sbjct: 249 NSMVDEGFWFFKEMSRFKC 267



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 19/226 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N M   L  N        +F++L   G   D  ++  LI   C+ G    GF +
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGT-QDPPSYKTLILGHCREGTPEAGFDL 512

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +LR  F PD              A TY  +IDGL K+G    A +   KM   +  P
Sbjct: 513 LVLMLRRDFVPD--------------AETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLP 558

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL----CKNGKMDEA 209
               + S++         +E+  L   M+++ ++ N+      M+EL    C++ K+ EA
Sbjct: 559 TTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEA 618

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +L   ++     D    +T++ G C   +V+ A  L+  +   G
Sbjct: 619 QKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 664



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 113/299 (37%), Gaps = 68/299 (22%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSI 76
           EAL +   M+     P  ++ +N ++  L + +  D +  + + +   G F PD  T + 
Sbjct: 326 EALSLLAEMVSRGLKPNKIT-YNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNT 384

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI   C MG++   F V  ++      PD  T++ L++                      
Sbjct: 385 LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 444

Query: 116 -------CKP----------------------------------DAITYNTIIDGLCKQG 134
                  CKP                                  D  +Y T+I G C++G
Sbjct: 445 ILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREG 504

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             +   +L + M  ++  P+  TY  +I G     D   A +   +M+     P    F+
Sbjct: 505 TPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFH 564

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPD----AFTYNTLLDGFCLTGRVNHAKELFV 249
            I+  L + G   E++SL+ LM++  +R +      T   L+   C + ++  A+++ +
Sbjct: 565 SILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLL 623


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N+++ C  K    D   + FK +   G+ P+L T + LI+ +CK G +     +L 
Sbjct: 462 VCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLV 521

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L   F PD+ TF+S              IIDGLC+   ++ A   F +M    + PN 
Sbjct: 522 MLLEHGFKPDIFTFSS--------------IIDGLCRAKQIEDALGCFSEMVMWGLSPNA 567

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY  +I   C   D   + +L  +M   G+ P+V +FN ++   C+ GK+++A  L   
Sbjct: 568 VTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSS 627

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+  G+ PD +TY   +  FC +GR N AKELF+SME+ GC
Sbjct: 628 MLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGC 668



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++FNI + CL K    + V ++  R    G+     T+  LI      G+V+ G   
Sbjct: 390 PDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHY 449

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++++     +V ++  +I   CK                    P+ +T+NT+IDG CK
Sbjct: 450 FNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCK 509

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + K+++L + + +   KP++ T++S+I G C A    +A   F EM+  G+ PN VT
Sbjct: 510 GGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVT 569

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LC  G +  +  LL  M   G+ PD F++N L+  FC  G+V  AK+LF SM 
Sbjct: 570 YNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSML 629

Query: 253 SMG 255
           S+G
Sbjct: 630 SLG 632



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 14/196 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ML  H   P + +F+ ++  L + K  +  L  F  +   GL P+  T++ILI+  C +G
Sbjct: 522 MLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIG 581

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     +L ++      PDV +F              N +I   C+ G V+ AK+LF  
Sbjct: 582 DVPRSMKLLRKMQTDGINPDVFSF--------------NALIQSFCRMGKVEDAKKLFSS 627

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    + P+  TY + I+ FC +  +NEAK LF+ M   G  P+  T N+I+D L K  +
Sbjct: 628 MLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQ 687

Query: 206 MDEASSLLDLMIQHGV 221
            + A  +     + G+
Sbjct: 688 FEAAQKIAKTCSEWGI 703



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 75/139 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD+ T+N  ++ L K   +++   +  +  ++ +K    TY ++I+    A    E   
Sbjct: 389 KPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNH 448

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F +M+  G+  NV ++N+++D  CK   MD+A++    M   G+ P+  T+NTL+DG+C
Sbjct: 449 YFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYC 508

Query: 237 LTGRVNHAKELFVSMESMG 255
             G +  +++L V +   G
Sbjct: 509 KGGEICKSRDLLVMLLEHG 527



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 14/209 (6%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++  CL +       + L K + ++G   +     ILI  + ++G   +   + G+I   
Sbjct: 152 VLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQI--- 208

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                  +F  +     P    YN +ID L K   +D A   F +M   N KP+  TY  
Sbjct: 209 -------SFLGI----SPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNI 257

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I G C +   +EA RL  +M   G  PNV T+ +++D      K+DEA  +L+ M    
Sbjct: 258 LIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARK 317

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           V P   T  + + G       N A EL +
Sbjct: 318 VSPSEATIRSFIHGVFRCVAPNKAFELAI 346



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 49/253 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   D     F+++++    PD +T++ILI+  C+ G V     +
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++    ++P+V T+T L              IDG      VD+A  +   MK + V P
Sbjct: 275 VKQMEGLGYSPNVFTYTIL--------------IDGFFNAKKVDEAFRVLETMKARKVSP 320

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----------------------------- 184
           +  T  S I G       N+A  L IE +++                             
Sbjct: 321 SEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALL 380

Query: 185 ------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
                 G +P+  TFN+ M+ L K   ++E  ++LD  ++ G++    TY  L+    + 
Sbjct: 381 KKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMA 440

Query: 239 GRVNHAKELFVSM 251
           G+V      F  M
Sbjct: 441 GKVTEGNHYFNQM 453



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++  + ++   D  L L K++   G  P+++T++ILI+ F    +V   F V
Sbjct: 250 PDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRV 309

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPD-----AITY------------NTIIDGLCK 132
           L  +     +P   T  S I    +   P+     AI +            +T++  L  
Sbjct: 310 LETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSS 369

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +    +A  L  K      KP+  T+   +       D NE   +    ++QG++    T
Sbjct: 370 KNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFST 429

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  L   GK+ E +   + M++ G+  +  +YN ++D FC T  ++ A   F  M+
Sbjct: 430 YLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQ 489

Query: 253 SMG 255
             G
Sbjct: 490 YKG 492



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 106 VVTFTSLIKVCKPDAITYNT-----IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
           VV    L+K  K      N      +I    + G      E+F ++    + P+   Y +
Sbjct: 163 VVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNA 222

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           VI     +N  + A   F +M     +P+  T+N+++  +C++G +DEA  L+  M   G
Sbjct: 223 VIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLG 282

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             P+ FTY  L+DGF    +V+ A  +  +M++
Sbjct: 283 YSPNVFTYTILIDGFFNAKKVDEAFRVLETMKA 315



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F ++   G+ P+   +N ++D L K+  +D A      M     +PD FTYN L+ G 
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C +G V+ A  L   ME +G
Sbjct: 263 CRSGVVDEALRLVKQMEGLG 282


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 120/216 (55%), Gaps = 15/216 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  FN+++    K K  D+   L + +   G  P+++T +ILI   CK  RV     +
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L +++              +  C P+ +TY+T+I+GLCKQG VD A ELF  M+ +N  P
Sbjct: 290 LEKMV--------------MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPP 335

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVT+  +I G C A    EA++L+  M + G  P+++T+N ++D LCK+ ++DEA  L 
Sbjct: 336 NVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLF 395

Query: 214 DLMIQHGVR-PDAFTYNTLLDGFCLTGRVNHAKELF 248
             + + GV   +A TY+TL  G+   GR+  A  +F
Sbjct: 396 QTIPESGVSAANAVTYSTLFHGYAALGRMADACRIF 431



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 36/290 (12%)

Query: 1   ERLKSSG-EGDI---TTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAK 48
           E +KSSG EG+    TT+           EAL  F  M +     P V ++  ++  L K
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK--DCAPDVMTYTALVHALCK 138

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
              +D    + + + + G  PD  T S LI+  CK G     F VL  +++         
Sbjct: 139 AGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA 198

Query: 109 FTSLI-KVCK---------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           F ++I ++C                      P  + +N +I+G CK   +D A +L   M
Sbjct: 199 FETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVM 258

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +K   PNV T+T +I G C AN   EA++L  +M+  G  PNVVT++ +++ LCK G++
Sbjct: 259 IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQV 318

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D+A  L  LM +    P+  T+N L+DG C   R+  A++L+  M   GC
Sbjct: 319 DDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGC 368



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 61/298 (20%)

Query: 17  NEALCIF-DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            EAL +F + M R+    P   ++ I++   +     D  + L + + S+G   +   H+
Sbjct: 39  QEALALFRNAMARI--CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHT 96

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
            L+   C  GRV         + + C  PDV+T+T+L+                      
Sbjct: 97  TLMKGLCDAGRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMVAQ 155

Query: 116 -CKPDAITYNTIIDGLCK-----QGF-------------------------------VDK 138
            C PD +T++T+IDGLCK     Q F                               V+ 
Sbjct: 156 GCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVEL 215

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++   +  K   P V+ +  VI GFC A D + A +L   M+++G  PNV TF +++ 
Sbjct: 216 ASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILIT 275

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK  ++ EA  LL+ M+  G  P+  TY+T+++G C  G+V+ A ELF  ME   C
Sbjct: 276 GLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC 333



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V++ + +LG L +  H +  + LF  + + G   D   +++++    +  +      
Sbjct: 475 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALA 534

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           VL +++               +   P +   + +++ LC+ G  D AK+L  KM ++   
Sbjct: 535 VLEQVI-----------DKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFA 583

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
             V +Y  ++ G      W+EA ++F  M+  G  P + T NV++  LC   K+D+A  L
Sbjct: 584 AAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYEL 643

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M + G  PD  T NTL+ G+C +GR + A++L   M   G
Sbjct: 644 VQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAG 686



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 116/277 (41%), Gaps = 56/277 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S N  L  L +       L+LF+   +    P+ +T+ ILI  F   G +     +L 
Sbjct: 22  VFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLE 81

Query: 96  RILRSCFTPDVVTFTSLIKV--------------------CKPDAITYNTIIDGLCKQGF 135
            +  S F  + V  T+L+K                     C PD +TY  ++  LCK G 
Sbjct: 82  EMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGK 141

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--------- 186
            D+A+ +  +M  +   P+ VT++++I G C      +A R+  +++ +G+         
Sbjct: 142 FDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFET 201

Query: 187 ---------------------------QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
                                       P V+ FN++++  CK   +D A  LL++MI+ 
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 261

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+ FT+  L+ G C   RV  A++L   M   GC
Sbjct: 262 GCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGC 298



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 16/233 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M R +  PP V + NI++  L K K  +    L+ R+  TG  PD+ T++ 
Sbjct: 319 DDAYELFQLMERRN-CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 377

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK  +V   F +   I  S              V   +A+TY+T+  G    G +
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPES-------------GVSAANAVTYSTLFHGYAALGRM 424

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  +F  + DK   P++ TYTS+I  +C  +   E   L  EM  +G  P V T + +
Sbjct: 425 ADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAV 484

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +  L +    + A  L D M   G   DA  YN +++G     +  H K L V
Sbjct: 485 LGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASK--HDKALAV 535



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 112/264 (42%), Gaps = 24/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  +     S     +++ +    A          +F  L   G  PDL T++ 
Sbjct: 389 DEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTS 448

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  +CK  R      ++  +    F P V T ++++                     + 
Sbjct: 449 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG 508

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAK---ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
           C  DA+ YN +++G+ +    DKA    E  +  +D+   P+     +++   C     +
Sbjct: 509 CTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTD 568

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +AK+L  +M ++G    V ++N ++  L +  + DEA+ + + M+  G  P+  T N ++
Sbjct: 569 DAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVI 628

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
              C   +V+ A EL   M  +GC
Sbjct: 629 SWLCSAAKVDDAYELVQRMSKLGC 652



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 47/110 (42%)

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF       V  NV +    +   C  N   EA  LF   M +   PN  T+ +++    
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G +D A  LL+ M   G   +A  + TL+ G C  GRV  A E F +M
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 118



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +     V  NV + N  +D LC+  +  EA +L    +     P+ FTY  L+ GF 
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++ A +L   M+S G
Sbjct: 69  SAGDLDIAIQLLEEMKSSG 87


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 22/243 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           V + N++L  +      D  + L + L  S G  PD+ +++ ++   C   R  H   ++
Sbjct: 181 VGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLM 240

Query: 95  GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
             ++ +   P++VTF++LI                       C PD   Y TIIDG+CK+
Sbjct: 241 EEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKE 300

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             ++ A+ +  +M    + PNVV Y ++++G C A+ W EA+ L  EM D+    + VTF
Sbjct: 301 ERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTF 360

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N+++D LC+NG +D    +L+ M++HG  PD  TY T+++GFC  G ++ A  L  SM +
Sbjct: 361 NILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAA 420

Query: 254 MGC 256
            GC
Sbjct: 421 CGC 423



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V  +  ++  + K +  +    +  R+ S GL P++  ++ L+   C   R   
Sbjct: 281 HGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEE 340

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIID 128
              +L  +       D VTF  L+                       C PD ITY T+I+
Sbjct: 341 AEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVIN 400

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+G +D+A  L   M     +PN V+YT V++G C A  W +A+ L  +M+ QG  P
Sbjct: 401 GFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPP 460

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N VTFN +++ LCK G +++A  LL  M+ +G  PD  +Y+T++DG    G  + A EL 
Sbjct: 461 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELL 520

Query: 249 VSMESMG 255
             M   G
Sbjct: 521 NVMVKKG 527



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + +F+ ++G L +N  ++ V  +  ++   G  PD+  ++ +I+  CK  R+     
Sbjct: 249 PPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARG 308

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L R+     +P+VV + +L+K                      C  D +T+N ++D LC
Sbjct: 309 ILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLC 368

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G VD+  E+  +M +    P+V+TYT+VI GFC     +EA  L   M   G +PN V
Sbjct: 369 QNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTV 428

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ +++  LC   +  +A  L+  MIQ G  P+  T+NTL++  C  G V  A EL   M
Sbjct: 429 SYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 488

Query: 252 ESMGC 256
              GC
Sbjct: 489 LVNGC 493



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++  L +N   D V+ + +++   G  PD+ T++ +IN FCK G +    ++L  +
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ V++T ++K                      C P+ +T+NT+I+ LCK+G V
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 478

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A + +EA  L   M+ +G+ PN + ++ I
Sbjct: 479 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSI 538

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L   G++++   + + +    VR DA  YN ++   C  G  + A E    M S GC
Sbjct: 539 ASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGC 598



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 22/214 (10%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV----VTFTSLIKV---- 115
           S  + P+ YT+  L+   C  GR++    VL  + R    P      VT  +  +     
Sbjct: 104 SVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFR 163

Query: 116 -------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSV 161
                        C  D    N ++  +C QG VD+A  L   +      +P+VV+Y +V
Sbjct: 164 GAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +RG C A  W   + L  EM+  G  PN+VTF+ ++  LC+NG  +    +   M +HG 
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGC 283

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            PD   Y T++DG C   R+  A+ +   M S G
Sbjct: 284 APDVRMYATIIDGVCKEERLEVARGILNRMPSYG 317



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A TY  ++  LC +G +  A  +   M  +   P    Y   +   C A+ +  A  +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFC 236
             ++  +G   +V   N+++  +C  G +DEA  LL DL+   G  PD  +YN +L G C
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 237 LTGRVNHAKELFVSMESMGC 256
           +  R  H ++L   M + GC
Sbjct: 229 MARRWGHVQDLMEEMVAAGC 248



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++  L K    +  + L K++   G  PDL ++S +I+   K G       
Sbjct: 459 PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALE 518

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +L  +++   +P+ + ++S+                         + DA+ YN +I  LC
Sbjct: 519 LLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLC 578

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           K+G  D+A E    M      PN  TYT +IRG        EA+ +  E+  +G 
Sbjct: 579 KRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGA 633



 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A    +            V PN  T+  ++  LC  G++ +A ++LD M 
Sbjct: 82  YNAMVAGYCRAG---QLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G  P    Y+  L+  C       A  +   +   GC
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGC 177


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 135/263 (51%), Gaps = 24/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHS 75
            +AL + + M     SP  ++  NI++  L + K  +    + +RL   G+  P++ T++
Sbjct: 99  QKALELVERMTEFGCSPDTITQ-NILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYT 157

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
            +I+ +CK GR+   F V   +L+S   P+ VT+  LI                      
Sbjct: 158 SVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILH 217

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PD +T+N++IDG C+ G +D A  ++++M   +++PNV T++ +I   C  N   EA
Sbjct: 218 SCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEA 277

Query: 175 KRLFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
             L  E+ M   + P    +N I+D LCK GK+DEA+ ++  M + G  PD +TY  L+ 
Sbjct: 278 LSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILII 337

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C+ GR+  A  LF  M   GC
Sbjct: 338 GHCMKGRIPEAVTLFHKMVETGC 360



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+  ++     P V SFN+++  + +  +    L L +R+   G  PD  T +I
Sbjct: 63  QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNI 122

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L++  C++ +V+ G  VL R+ R     P+VVT+TS+I   CK                 
Sbjct: 123 LVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K   ++ A  ++ ++   +  P+VVT+ S+I G+C     ++A
Sbjct: 183 GTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDA 242

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R+++EM    +QPNV TF++I+  LC   +  EA SLL +L ++  + P  F YN ++D
Sbjct: 243 MRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIID 302

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   ME  GC
Sbjct: 303 ILCKGGKVDEANLIVTDMEEKGC 325



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 117/216 (54%), Gaps = 16/216 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGR 96
           ++N +L  L  +      ++LF+     GL+ PD+++ +++I   C++G +     ++ R
Sbjct: 48  AYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVER 107

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNV 155
           +                  C PD IT N ++DGLC+   V+K  E+  +++   V  PNV
Sbjct: 108 MTEFG--------------CSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNV 153

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYTSVI G+C A    +A  ++ +M+  G +PN VT+NV+++   K   M+ A  +   
Sbjct: 154 VTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQ 213

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +I H   PD  T+N+L+DG+C  G+++ A  +++ M
Sbjct: 214 LILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEM 249



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           + L +H  PP V +FN ++    +    D  + ++  +    + P++YT SI+I+  C  
Sbjct: 212 WQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQ 271

Query: 85  GRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
            R +    +L  + +R+    D+V          P    YN IID LCK G VD+A  + 
Sbjct: 272 NRSAEALSLLRELNMRA----DIV----------PQTFIYNPIIDILCKGGKVDEANLIV 317

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             M++K   P+  TYT +I G C      EA  LF +M++ G +P+ +T N  +  + K 
Sbjct: 318 TDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKA 377

Query: 204 GKMDEASSLLDLMIQHG 220
           G  +E   ++ +   H 
Sbjct: 378 GMPNEVHQIMLIASGHA 394


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 138/246 (56%), Gaps = 31/246 (12%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK-------MGRVS 88
           + S N +L CL ++   D V  LF+ L   G  P+++T++I++N FC+       + R S
Sbjct: 171 IMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRAS 230

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPDAIT----YNTII 127
               +LG+I  S  TP+VVT+ + IK                 +C+ +       +N +I
Sbjct: 231 E---ILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVI 287

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            GLC+ G +D+A E+F +MK+  + P+V +Y+ +I GFC     ++A  +F EM + G+ 
Sbjct: 288 YGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGIL 347

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+ ++++++D  CK G++D+A  + + M   G+ PD ++Y+ L+DGFC  G ++ A + 
Sbjct: 348 PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKF 407

Query: 248 FVSMES 253
           +  M S
Sbjct: 408 WEEMTS 413



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 121/279 (43%), Gaps = 56/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S++I++    K    D  L +F+ + ++G+ PD+Y++SILI+ FC+ G +      
Sbjct: 348 PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKF 407

Query: 94  LGRILRSCFTPDVVTFTSLIK----------------------------VC--------- 116
              +  + F+P    + SLIK                             C         
Sbjct: 408 WEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCR 467

Query: 117 KPD-------------------AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           KPD                     +YN  I  +C+    +KA +L   M  +NV P+VV 
Sbjct: 468 KPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVN 527

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I  F    +  +A  LFI+M   G+  NV T+ ++++    + KMD A  L   M 
Sbjct: 528 YSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMK 587

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  V PD   Y +L+ GFC TG +  A+ LF  M   GC
Sbjct: 588 ESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGC 626



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 129/262 (49%), Gaps = 32/262 (12%)

Query: 22  IFDYMLRMHPSPPPVSSFNIML-------GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +F+ +++  P P  + ++ IM+       GC    +    +L    ++  +G  P++ T+
Sbjct: 193 LFEVLIKFGPRPN-IHTYTIMMNFFCRGVGCSVDIRRASEILG---KIYMSGETPNVVTY 248

Query: 75  SILINCFCKMGRVSHGFVVLGRILRS-------CFTPDVVTF---------TSLIKVCK- 117
              I   CK+G     + ++  + R        CF   +            + + K  K 
Sbjct: 249 GTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKN 308

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD  +Y+ +IDG C++G VD+A E+F +M++  + PN+ +Y+ +I GFC     ++
Sbjct: 309 SGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDK 368

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F EM + G+ P+V ++++++D  C+ G MD A    + M  +   P AF Y +L+ 
Sbjct: 369 ALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIK 428

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+  + +  +A + F  M+ +G
Sbjct: 429 GYYKSKQFANALKEFRIMQKLG 450



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N  +  + +    +  L L   +    + PD+  +S LI+CF K        ++  ++
Sbjct: 492 SYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKM 551

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +   T +V T+T LI +   D           CK   +D A  LF  MK+  V P+ + 
Sbjct: 552 TKVGITFNVKTYTILINLFISD-----------CK---MDVAYRLFKGMKESRVYPDQIA 597

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YTS++ GFC   +   A+ LF EM  +G  PNVVT+   ++E  K  K ++A  L + M 
Sbjct: 598 YTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMK 657

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + GV PD   Y  L+  FC TG +N A+ LF  M+  G
Sbjct: 658 ERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG 695



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++  L +    D    +FK + ++G+ PD+Y++SILI+ FC+ GRV     V   + 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR 342

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            S   P++ +              Y+ +IDG CK+G VDKA E+F +MK+  + P+V +Y
Sbjct: 343 NSGILPNIYS--------------YSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSY 388

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           + +I GFC   D + A + + EM      P+   +  ++    K+ +   A     +M +
Sbjct: 389 SILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQK 448

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+ PD    N +L  +C     N A  L    +  G
Sbjct: 449 LGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENG 485



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 119/248 (47%), Gaps = 23/248 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL +   ML+ +   P V +++ ++ C AK  + +  + LF ++   G+  ++ T++
Sbjct: 506 PEKALQLLPVMLKRN-VLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYT 564

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILIN F    ++   + +   +  S   PD + +TSL+                     +
Sbjct: 565 ILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSRE 624

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C P+ +TY   I+   K    ++A +L+ KMK++ V P+ + YT +I  FC   + N A
Sbjct: 625 GCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRA 684

Query: 175 KRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           + LF EM  +G   PNVV +  +++   K  K D+A  L + M   G+     +  ++ +
Sbjct: 685 EALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGSVSE 744

Query: 234 GFCLTGRV 241
            +C   +V
Sbjct: 745 SWCCRHQV 752



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLIKVCKPDAITY 123
           G    + + SI+I+ +   G     F+++  I+        D     SL+   +   + +
Sbjct: 80  GFENSINSFSIIIHTYALAGMSWEVFILIRDIVTFYKEENRDAGELVSLLLDVEKSNVVF 139

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I        ++ A  +F++ KD  ++ N+++   +++     N  +  + LF  ++ 
Sbjct: 140 DMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIK 199

Query: 184 QGVQPNVVTFNVIMDELCK----NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            G +PN+ T+ ++M+  C+    +  +  AS +L  +   G  P+  TY T + G C  G
Sbjct: 200 FGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVG 259


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + S+N+++ CL K K  D    +F+ L++ G+ P++ T++ LI  FC+ G +     +L 
Sbjct: 465 IYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE 524

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L S F PD+ TF              N++IDGLC+    + A   F +M + +V PNV
Sbjct: 525 MLLESRFRPDIFTF--------------NSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 570

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY  +I  FC   D + +  L  +M   G+QP+  +FN ++       +  +A  L D 
Sbjct: 571 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDS 630

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ G++PD +TY  L+   C +GR + A+E+F+SM+  GC
Sbjct: 631 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 671



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+FNI L C+ K        ++F     +G+ P   T+  LI    K G++  G   
Sbjct: 393 PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 452

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + R++      ++ ++  +I  +CK                    P+ +TYNT+I G C+
Sbjct: 453 MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCR 512

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA+EL   + +   +P++ T+ S+I G C A+    A   F EM++  V PNV+T
Sbjct: 513 NGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVIT 572

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   C  G +  ++ LL  M  HG++PD F++N L+ G+    R   A++LF SM 
Sbjct: 573 YNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSML 632

Query: 253 SMG 255
            +G
Sbjct: 633 RLG 635



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 47/266 (17%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++NI++  + +    D  L L K++   G FP+++T++ILI+ F    R   
Sbjct: 258 HNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGE 317

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK----------------------------VC----- 116
            F VL  +      P+  T  SL+                             VC     
Sbjct: 318 TFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILY 377

Query: 117 --------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                          P + T+N  +  + K+  +     +F       VKP   TY ++I
Sbjct: 378 CLSNNSMASEAVMFXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLI 437

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
                A       R    +++ G+  N+ ++N+++D LCK   MD AS +   +   G+ 
Sbjct: 438 EALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGIS 497

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELF 248
           P+  TYNTL+ GFC  G ++ A+EL 
Sbjct: 498 PNIVTYNTLIGGFCRNGNMDKAQELL 523



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 44/236 (18%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   D     F++++S    PD +T++ILI+  C++G V     +
Sbjct: 227 PTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRL 286

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++    + P+V T+T L              IDG        +  ++   MK++NV P
Sbjct: 287 MKQMEGLGYFPNVFTYTIL--------------IDGFFNAKRAGETFKVLQTMKERNVVP 332

Query: 154 NVVTYTSVIRGF--CYANDWNEAKRLFIEMMD--QGV----------------------- 186
           N  T  S++ G   C A D  +A  L +E ++  QG+                       
Sbjct: 333 NEATMRSLVHGVFRCIAPD--KAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVM 390

Query: 187 -QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             P+  TFN+ +  + K   +    ++ D  +Q GV+P   TY TL++     G++
Sbjct: 391 FXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKM 446



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 21/202 (10%)

Query: 40  NIMLGCLAKNKHYD-----TVLS--LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            ++ G L +N H +      +LS  L +++  +GL        IL   + ++G  ++   
Sbjct: 156 QLIQGVLVRNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVE 215

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V G+I              L+ +  P    YN ++D L K   +D A   F +M   N  
Sbjct: 216 VFGQI-------------GLLGL-NPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCV 261

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  TY  +I G C     +EA RL  +M   G  PNV T+ +++D      +  E   +
Sbjct: 262 PDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKV 321

Query: 213 LDLMIQHGVRPDAFTYNTLLDG 234
           L  M +  V P+  T  +L+ G
Sbjct: 322 LQTMKERNVVPNEATMRSLVHG 343



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G  +   E+F ++    + P    Y +V+     +N  + A   F +M      P+  
Sbjct: 206 RLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRF 265

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N+++  +C+ G +DEA  L+  M   G  P+ FTY  L+DGF    R   A E F  +
Sbjct: 266 TYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKR---AGETFKVL 322

Query: 252 ESM 254
           ++M
Sbjct: 323 QTM 325



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 35/71 (49%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ P    +N +MD L K+  +D A      M  H   PD FTYN L+ G C  G V+ A
Sbjct: 224 GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEA 283

Query: 245 KELFVSMESMG 255
             L   ME +G
Sbjct: 284 LRLMKQMEGLG 294



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++H   P   SFN ++        +     LF  +   G+ PD YT+  LI   CK GR
Sbjct: 596 MKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGR 655

Query: 87  VSHGFVVLGRILRSCFTPDVVT 108
                 +   +  +  TPD  T
Sbjct: 656 HDKAREIFLSMKENGCTPDSYT 677


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP +  FN+++    K         +F  +   GL P + + + LI+  CK G V  GF 
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFR 304

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           + G +      PDV TF++LI  +CK                    P+ +T+ T+IDG C
Sbjct: 305 LKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQC 364

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A + F  M  + V+P++VTY ++I G C   D  EA+RL  EM   G++P+ +
Sbjct: 365 KGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKI 424

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF  ++D  CK+G M+ A  +   M++ G+  D   +  L+ G C  GRV+ A  +   M
Sbjct: 425 TFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDM 484

Query: 252 ESMG 255
            S G
Sbjct: 485 LSAG 488



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K+   +    L   + S G+ PD++T S LIN  CK GR+  G ++
Sbjct: 281 PTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLL 340

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ VTFT+LI                     +  +PD +TYN +I+GLCK
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+ L  +M    +KP+ +T+T++I G C   D   A  +   M+++G++ + V 
Sbjct: 401 VGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVA 460

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++  LC+ G++ +A  +L  M+  G +PD  TY  ++D FC  G V    +L   M+
Sbjct: 461 FTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQ 520

Query: 253 SMG 255
           S G
Sbjct: 521 SDG 523



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 21/220 (9%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           +L+  +  +G  P +Y  ++L++ FCK G V +  +V   I +    P VV+F +LI  C
Sbjct: 234 ALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGC 293

Query: 117 ---------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                                 PD  T++ +I+GLCK+G +D+   LF +M  + + PN 
Sbjct: 294 CKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNG 353

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VT+T++I G C     + A + F  M+ QGV+P++VT+N +++ LCK G + EA  L++ 
Sbjct: 354 VTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNE 413

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   G++PD  T+ TL+DG C  G +  A E+   M   G
Sbjct: 414 MTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 114/244 (46%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   +FD M      P  V+ F  ++    K    D  L  F+ + + G+ PDL T++ 
Sbjct: 335 DEGSLLFDEMCGRGLVPNGVT-FTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LIN  CK+G +     ++  +  S   PD +TFT+LI  C                    
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D + +  +I GLC++G V  A  +   M     KP+  TYT VI  FC   D     
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM   G  P VVT+N +M+ LCK G+M  A  LLD M+  GV P+  TYN LLDG 
Sbjct: 514 KLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGH 573

Query: 236 CLTG 239
              G
Sbjct: 574 SKHG 577



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++  L K    D    LF  +   GL P+  T + LI+  CK G+V      
Sbjct: 316 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKN 375

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD+VT+ +LI  +CK                    PD IT+ T+IDG CK
Sbjct: 376 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCK 435

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A E+  +M ++ ++ + V +T++I G C     ++A R+  +M+  G +P+  T
Sbjct: 436 DGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPT 495

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CK G +     LL  M   G  P   TYN L++G C  G++ +AK L  +M 
Sbjct: 496 YTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAML 555

Query: 253 SMG 255
           ++G
Sbjct: 556 NVG 558



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 30/224 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K         L   + ++GL PD  T + LI+  CK G +     +
Sbjct: 386 PDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEI 445

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             R++      D V FT+LI  +C                    KPD  TY  +ID  CK
Sbjct: 446 KRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCK 505

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V    +L  +M+     P VVTY +++ G C       AK L   M++ GV PN +T
Sbjct: 506 KGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDIT 565

Query: 193 FNVIMDELCKNGKMDEASSLLDLMI---QHGVRPDAFTYNTLLD 233
           +N+++D   K+G      S +D+ I   + G+  D  +Y  L++
Sbjct: 566 YNILLDGHSKHG------SSVDVDIFNSEKGLVTDYASYTALVN 603



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 69/120 (57%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           ++++  L+L++ D    P +  +  ++ GFC A D   A+ +F E+  +G++P VV+FN 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   CK+G ++E   L  +M   GV PD FT++ L++G C  GR++    LF  M   G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + S+N+++ CL K K  D    +F+ L++ G+ P++ T++ LI  FC+ G +     +L 
Sbjct: 474 IYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE 533

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L S F PD+ TF              N++IDGLC+    + A   F +M + +V PNV
Sbjct: 534 MLLESRFRPDIFTF--------------NSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 579

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY  +I  FC   D + +  L  +M   G+QP+  +FN ++       +  +A  L D 
Sbjct: 580 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDS 639

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ G++PD +TY  L+   C +GR + A+E+F+SM+  GC
Sbjct: 640 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 680



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+FNI L C+ K        ++F     +G+ P   T+  LI    K G++  G   
Sbjct: 402 PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 461

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           + R++      ++ ++  +I  +CK                    P+ +TYNT+I G C+
Sbjct: 462 MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCR 521

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA+EL   + +   +P++ T+ S+I G C A+    A   F EM++  V PNV+T
Sbjct: 522 NGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVIT 581

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   C  G +  ++ LL  M  HG++PD F++N L+ G+    R   A++LF SM 
Sbjct: 582 YNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSML 641

Query: 253 SMG 255
            +G
Sbjct: 642 RLG 644



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++NI++  + +    D  L L K++   G FP+++T++ILI+ F    R   
Sbjct: 258 HNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGE 317

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI----KVCKPD-----------------AITYNTIID 128
            F VL  +      P+  T  SL+    +   PD                  +  + I+ 
Sbjct: 318 AFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILY 377

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L       +A    +K   +   P+  T+   +       D      +F   +  GV+P
Sbjct: 378 CLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKP 437

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              T+  +++ L K GKM+  +  +D +I  G+  + ++YN ++D  C    ++ A E+F
Sbjct: 438 GFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMF 497

Query: 249 VSMESMG 255
             + + G
Sbjct: 498 RDLHNRG 504



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 49/243 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   D     F++++S    PD +T++ILI+  C++G V     +
Sbjct: 227 PTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRL 286

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++    + P+V T+T L              IDG        +A ++   MK++NV P
Sbjct: 287 MKQMEGLGYFPNVFTYTIL--------------IDGFFNAKRAGEAFKVLQTMKERNVVP 332

Query: 154 NVVTYTSVIRG---------------------------------FCYAND--WNEAKRLF 178
           N  T  S++ G                                 +C +N+   +EA    
Sbjct: 333 NEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFL 392

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           I+   +G  P+  TFN+ +  + K   +    ++ D  +Q GV+P   TY TL++     
Sbjct: 393 IKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKA 452

Query: 239 GRV 241
           G++
Sbjct: 453 GKM 455



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 21/202 (10%)

Query: 40  NIMLGCLAKNKHYD-----TVLS--LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            ++ G L +N H +      +LS  L +++  +GL        IL   + ++G  ++   
Sbjct: 156 QLIQGVLVRNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVE 215

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V G+I              L+ +  P    YN ++D L K   +D A   F +M   N  
Sbjct: 216 VFGQI-------------GLLGL-NPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCV 261

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+  TY  +I G C     +EA RL  +M   G  PNV T+ +++D      +  EA  +
Sbjct: 262 PDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKV 321

Query: 213 LDLMIQHGVRPDAFTYNTLLDG 234
           L  M +  V P+  T  +L+ G
Sbjct: 322 LQTMKERNVVPNEATMRSLVHG 343



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%)

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  +   E+F ++    + P    Y +V+     +N  + A   F +M      P+  T+
Sbjct: 208 GLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTY 267

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           N+++  +C+ G +DEA  L+  M   G  P+ FTY  L+DGF    R   A ++  +M+
Sbjct: 268 NILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMK 326



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 35/71 (49%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ P    +N +MD L K+  +D A      M  H   PD FTYN L+ G C  G V+ A
Sbjct: 224 GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEA 283

Query: 245 KELFVSMESMG 255
             L   ME +G
Sbjct: 284 LRLMKQMEGLG 294



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++H   P   SFN ++        +     LF  +   G+ PD YT+  LI   CK GR
Sbjct: 605 MKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGR 664

Query: 87  VSHGFVVLGRILRSCFTPDVVT 108
                 +   +  +  TPD  T
Sbjct: 665 HDKAREIFLSMKENGCTPDSYT 686


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 24/261 (9%)

Query: 15  TPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           + N AL + D   +M        V  ++I++  L K+ + D  LSLF  +   G+  D+ 
Sbjct: 222 SGNTALAL-DLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVV 280

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
            +S +I   C  GR   G  +L  ++     P+VVTF++LI V                 
Sbjct: 281 AYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEM 340

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD ITY+++IDG CK+  + +A ++   M  K  +PN+VTY+ +I  +C A   
Sbjct: 341 VARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +   RLF E+  +G+  + VT+N ++   C++GK++ A  L   M+  GV P   TY  L
Sbjct: 401 DNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGIL 460

Query: 232 LDGFCLTGRVNHAKELFVSME 252
           LDG C  G +  A E+F  M+
Sbjct: 461 LDGLCDNGELQKALEIFEKMQ 481



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 19/255 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL++     I  I  NEA+ +F+ M++  P P  +  F+ +   +A+ K YD VL   K
Sbjct: 39  ERLRNG----IVDIKVNEAIDLFESMIQSRPLPSLID-FSKLFSAVARRKEYDLVLGFCK 93

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
            ++  G+  ++YT +I+INCFC+  ++   F V+GR L+  F P+ +TF+          
Sbjct: 94  EMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFS---------- 143

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
               T+I+G C +G V +A  L  +M +   +PNVVT  ++I G C      EA  L   
Sbjct: 144 ----TLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDR 199

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  G + N +T+  +++ +CK+G    A  L   M +  ++     Y+ ++D  C  G 
Sbjct: 200 MVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGN 259

Query: 241 VNHAKELFVSMESMG 255
           ++ A  LF  ME  G
Sbjct: 260 LDDALSLFNEMEMKG 274



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P   +F+ ++            ++L  R+      P++ T + LIN  C  GRV+   V
Sbjct: 136 EPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALV 195

Query: 93  VLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLC 131
           ++ R+++     + +T+  ++ ++CK                       + Y+ +ID LC
Sbjct: 196 LIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLC 255

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A  LF +M+ K +K +VV Y+S+I G C    W++  ++  EM+ + + PNVV
Sbjct: 256 KDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVV 315

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF+ ++D   K GK+ EA  L + M+  G+ PD  TY++L+DGFC   R+  A ++   M
Sbjct: 316 TFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLM 375

Query: 252 ESMGC 256
            S GC
Sbjct: 376 VSKGC 380



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++    K         L+  + + G+ PD  T+S LI+ FCK  R+     +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKP--------------------DAITYNTIIDGLCK 132
           L  ++     P++VT++ LI   CK                     D +TYNT++ G C+
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AKELF +M  + V P+VVTY  ++ G C   +  +A  +F +M    +   +  
Sbjct: 432 SGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGI 491

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+I+  +C   K+D+A SL   +   GV+PD  TYN ++ G C  G ++ A  LF  M+
Sbjct: 492 YNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMK 551

Query: 253 SMGC 256
             GC
Sbjct: 552 EDGC 555



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +++ M+    +P  ++  +++ G   +N+  +    +   + S G  P++ T+SIL
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEAN-QMLDLMVSKGCEPNIVTYSIL 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN +CK  RV +G  +   I       D VT+ +L++  C+                   
Sbjct: 391 INSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +TY  ++DGLC  G + KA E+F KM+   +   +  Y  +I G C A+  ++A  
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  +  +GV+P+V+T+NV++  LCK G + EA  L   M + G  P   TYN L+    
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHL 570

Query: 237 LTGRVNHAKELFVSMESMG 255
               V  + EL   M+  G
Sbjct: 571 GGSGVISSVELIEEMKMRG 589



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 22/231 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+      P + +++I++    K K  D  + LF  ++S GL  D  T++ L
Sbjct: 367 EANQMLDLMVS-KGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTL 425

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPDA 120
           +  FC+ G+++    +   ++     P VVT+  L+                 K+ K   
Sbjct: 426 VQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRM 485

Query: 121 I----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           I     YN II G+C    VD A  LF  +  K VKP+V+TY  +I G C     +EA  
Sbjct: 486 ILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADM 545

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           LF +M + G  P+  T+N+++        +  +  L++ M   G   DA T
Sbjct: 546 LFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADAST 596



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++ I+L  L  N      L +F+++  + +   +  ++I+I+  C   +V   + 
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 93  VLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +               F SL +K  KPD +TYN +I GLCK+G + +A  LF KMK+   
Sbjct: 511 L---------------FCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 555

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY  +IR     +    +  L  EM  +G   +  T  +++  L  +G++D+  +
Sbjct: 556 APSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVML-SDGRLDK--T 612

Query: 212 LLDLM 216
            LD++
Sbjct: 613 FLDML 617



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I ++ +   + ++   D       +M    ++ N+ T   +I  FC       A  +
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
               +  G +PN +TF+ +++  C  G++ EA +L+D M++   RP+  T NTL++G CL
Sbjct: 127 VGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCL 186

Query: 238 TGRVNHAKELFVSMESMGC 256
            GRV  A  L   M   GC
Sbjct: 187 KGRVTEALVLIDRMVKYGC 205


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 21/242 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN---STGLFPDLYT 73
            EA  + D +    PS     S+N +L  L +  H+D   +L + ++        P+  +
Sbjct: 62  GEATSLLDAL----PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           +++L+   C   R      +L R +RS                + D +TY T+I GLC  
Sbjct: 118 YTVLMRALCADRRADQAVGLL-RSMRSAGV-------------RADVVTYGTLIRGLCDA 163

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             VDKA EL  +M +  ++PNVV Y+S+++G+C +  W +  ++F+EM ++G++P+VV +
Sbjct: 164 AEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMY 223

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D LCK GK  +A  ++D+M++ G+ P+  TYN L++  C  G V  A  +   M  
Sbjct: 224 TGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE 283

Query: 254 MG 255
            G
Sbjct: 284 KG 285



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 15/210 (7%)

Query: 27  LRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           L  HP+  P   S+ +++  L  ++  D  + L + + S G+  D+ T+  LI   C   
Sbjct: 105 LEPHPACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     ++G +  S   P+VV               Y++++ G CK G  +   ++F++
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVV--------------YSSLLQGYCKSGRWEDVGKVFVE 210

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M +K ++P+VV YT +I   C      +A  +   M+ +G++PNVVT+NV+++ +CK G 
Sbjct: 211 MSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGS 270

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + EA  +L  M + GV PD  TYNTL+ G 
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 38/280 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT--------VLSLFKRLNS 64
           T++ ++A  +FD + R   +P P  S N  L  LA+               L+LF R+  
Sbjct: 87  TLSRDDAHHMFDELFR-QATPVPGRSLNGFLTALARATSSSACITDGPALALALFNRVCR 145

Query: 65  TGLFP-----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---- 115
               P      ++T+SIL++C C+  R   G V+ G ILR+      +T ++L+K     
Sbjct: 146 EQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYA 205

Query: 116 ------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN--VKPNV 155
                             C P+  +Y+ I+ GLC      +A +LF  M  +     PNV
Sbjct: 206 NRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNV 265

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V Y +VI GF    +  +A  LF EM  QGV+P+VVT+N+I+D LCK   MD+A  +L  
Sbjct: 266 VAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M  +G +PD  TYN ++ G+   GR+  A ++F  M+S G
Sbjct: 326 MTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRG 365



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 22/239 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++   AK    D  + +F  +   G+ PD+ T+S +I+ F +MGR++       +++
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 99  RSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFV 136
                P+   + S+I+                      + +PD + +N++I+ LCK G V
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ++F  + D   +P+V+T+TS+I G+C     ++A ++   M   GV+ ++VT++ +
Sbjct: 563 MDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTL 622

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D   KNG++++  +L   M + GV+P+  TY  +L G    GR   A++ F  M   G
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 27/265 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA-KNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           P+  L +F  +LR       +++ + +L CL   N+  + V  L  R++  G  P+++++
Sbjct: 173 PDLGLVLFGCILRTGLKIHQITA-STLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSY 231

Query: 75  SILINCFCKMG---RVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVC----- 116
           SI++   C      R    F ++ +   +C +P+VV + ++I          K C     
Sbjct: 232 SIILKGLCDNSMSQRALDLFQMMAKEGGAC-SPNVVAYNTVIHGFFKEGETGKACSLFHE 290

Query: 117 ------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                 KPD +TYN IID LCK   +DKA+ +  +M     +P+ VTY  +I G+     
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA ++F +M  +G+ PN+V  N  +  LCK+G+  EA+ + D M   G +PD  +Y T
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCT 410

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           LL G+   G       LF SM+S G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNG 435



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 57/281 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P   ++N M+   A          +F+++ S GL P++   +  +   CK GR     
Sbjct: 331 AQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAA 390

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   +      PD+V++ +L+                          D   +N +I   
Sbjct: 391 EIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAY 450

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYT------------------------------- 159
            K+G VD A  +F +M+ + V P+VVTY+                               
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNT 510

Query: 160 ----SVIRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLD 214
               S+I+GFC      +AK L  EM+++G+ +P++V FN +++ LCK+G++ +A  + D
Sbjct: 511 AVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFD 570

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L+   G RPD  T+ +L+DG+CL G+++ A ++  +ME +G
Sbjct: 571 LVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG 611



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 59/297 (19%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
             AL +F  M +   +  P V ++N ++    K        SLF  +   G+ PD+ T++
Sbjct: 245 QRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYN 304

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ++I+  CK   +    +VL ++  +   PD VT+  +I                     +
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSR 364

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW--- 171
              P+ +  N+ +  LCK G   +A E+F  M  K  KP++V+Y +++ G+  +  W   
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYA-SEGWFAD 423

Query: 172 ---------------------------------NEAKRLFIEMMDQGVQPNVVTFNVIMD 198
                                            ++A  +F EM  QGV P+VVT++ ++ 
Sbjct: 424 MIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIS 483

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              + G++ +A    + M+  G++P+   Y++++ GFC+ G +  AKEL   M + G
Sbjct: 484 AFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKG 540



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ++  L K+        +F  +   G  PD+ T + LI+ +C +G++   F +
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +       +VV   +       D +TY+T++DG  K G ++    LF +M+ K VKP
Sbjct: 604 LDAM-------EVVGVET-------DIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKP 649

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VTY  ++ G   A     A++ F EM++ G    V  + +I+  LC+N   DEA  L 
Sbjct: 650 NTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILF 709

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +    V+      NT+++      R   AKELF ++ + G
Sbjct: 710 QKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASG 751



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 24/245 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           IFD +  +   P  ++  +++ G CL      D    +   +   G+  D+ T+S L++ 
Sbjct: 568 IFDLVTDIGERPDVITFTSLIDGYCLVGK--MDKAFKILDAMEVVGVETDIVTYSTLLDG 625

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTF----TSLIKVCKPDAI--------------- 121
           + K GR++ G  +   + R    P+ VT+      L +  +  A                
Sbjct: 626 YFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVT 685

Query: 122 --TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
              Y  I+ GLC+    D+A  LF K+   NVK ++    ++I          EAK LF 
Sbjct: 686 VSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFA 745

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +   G+ PN  T+ V++  L K+G +++A+++   M + G+ P +   N ++      G
Sbjct: 746 TISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKG 805

Query: 240 RVNHA 244
            +  A
Sbjct: 806 EIAKA 810



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 21/234 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR--------- 86
           + +++ +L    KN   +  L+LF+ +   G+ P+  T+ I++    + GR         
Sbjct: 616 IVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFH 675

Query: 87  ----------VSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAIT-YNTIIDGLCKQG 134
                     VS   ++LG + R+ C    ++ F  L  +    +IT  NT+I+ + K  
Sbjct: 676 EMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQ 735

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++AKELF  +    + PN  TY  +I          +A  +F  M   G+ P     N
Sbjct: 736 RKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLN 795

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            I+  L + G++ +A + L  +    +  +A T + +L  F   G+ +   +L 
Sbjct: 796 RIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYHEDMKLL 849


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 130/240 (54%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L KN        +++++   G+FP+LYT++ ++N  CK GR    F V   +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                + ++VT+ +LI  +C+                    P+ ITYNT+IDG C  G +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  L   +K + + P++VTY  ++ GFC   D + A ++  EM ++G++P+ VT+ ++
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D   ++  M++A  L   M + G+ PD  TY+ L+ GFC+ G++N A  LF SM    C
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC 474



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 50/257 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + FN +L  +  +  ++   S F   N + +  D+Y+  ILI   C+ G +   F +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL--------- 144
           L  +    F+P+VV +T              T+IDG CK+G ++KAK+LF          
Sbjct: 186 LIELTEFGFSPNVVIYT--------------TLIDGCCKKGEIEKAKDLFFEMGKLGLVA 231

Query: 145 --------------------------KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
                                     KM++  V PN+ TY  V+   C      +A ++F
Sbjct: 232 NERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVF 291

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM ++GV  N+VT+N ++  LC+  K++EA+ ++D M   G+ P+  TYNTL+DGFC  
Sbjct: 292 DEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGV 351

Query: 239 GRVNHAKELFVSMESMG 255
           G++  A  L   ++S G
Sbjct: 352 GKLGKALSLCRDLKSRG 368



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 126/235 (53%), Gaps = 15/235 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M R       + ++N ++G L +    +    +  ++ S G+ P+L T++ L
Sbjct: 286 DAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC +G+       LG+ L  C   D+ +     +   P  +TYN ++ G C++G   
Sbjct: 345 IDGFCGVGK-------LGKALSLC--RDLKS-----RGLSPSLVTYNILVSGFCRKGDTS 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ++  +M+++ +KP+ VTYT +I  F  +++  +A +L + M + G+ P+V T++V++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C  G+M+EAS L   M++    P+   YNT++ G+C  G    A +L   ME
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEME 505



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M +     P + ++N ++            LSL + L S GL P L T++I
Sbjct: 320 NEANKVVDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------------- 117
           L++ FC+ G  S    ++  +      P  VT+T LI                       
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY+ +I G C +G +++A  LF  M +KN +PN V Y ++I G+C       A 
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           +L  EM ++ + PNV ++  +++ LCK  K  EA  L++ MI  G+ P
Sbjct: 499 KLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDP 546



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 14/163 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I++   A++ + +  + L   +   GL PD++T+S+LI+ FC  G+++     
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA--- 462

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+ +S             K C+P+ + YNT+I G CK+G   +A +L  +M++K + P
Sbjct: 463 -SRLFKSMVE----------KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           NV +Y  +I   C      EA+RL  +M+D G+ P+    ++I
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 22/257 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D + R   S P + +++ +L    K    +    L K + S GL PD   ++ ++   
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDA 120
           CK  R+     +L  ++R+   P ++TF +LI  C                     K D 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYNT++DGLCK G + +A++L  +MK     P+VV Y+S + G C +    +A ++  +
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQ 247

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTG 239
           M D    PNVVT+N I+D LCK+GK+D A  +++ M    G   +   Y+T++DG C  G
Sbjct: 248 MRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 240 RVNHAKELFVSMESMGC 256
           R   A+ +  +M   GC
Sbjct: 308 RTQEARSVMEAMARAGC 324



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N +L  L K + +     L + + S G    PD+ T+S L++ +CK G+V    
Sbjct: 43  PNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESR 102

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
            +L  ++     PD + +T ++                       C P  IT+NT+I G 
Sbjct: 103 ELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGC 162

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++  ++ A  L  KM    VK +VVTY +++ G C A    EA++L   M   G  P+V
Sbjct: 163 CREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V ++  +  LCK+GK+ +A  +L+ M      P+  TYNT+LDG C +G+++ A E+   
Sbjct: 223 VAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQ 282

Query: 251 MESM-GC 256
           M S  GC
Sbjct: 283 MASSDGC 289



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 27/248 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++  L K         L +R+ ++G  PD+  +S  +   CK G+V     VL 
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLE 246

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP---------------------DAITYNTIIDGLCKQ 133
           ++  S   P+VVT+ +++  +CK                      + + Y+T++DGLCK 
Sbjct: 247 QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G   +A+ +   M     +P+VVTY+S++ G C A    EA     EM  +G +PN VT+
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVR-----PDAFTYNTLLDGFCLTGRVNHAKELF 248
             ++  LC  G++ EA  +++ M   G       P   TYN L+ G C  GR++ A + F
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 249 VSMESMGC 256
             M S GC
Sbjct: 427 QRMRSQGC 434



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 20/218 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V ++N +L  L K+   DT L + +++ S+ G   ++  +S +++  CK+GR      
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V+  + R+               C+PD +TY+++++GLCK G +++A E   +M  +  K
Sbjct: 315 VMEAMARA--------------GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK 360

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMD 207
           PN VTY S++ G C      EA+R+  EM   G       P+V T+N ++  LCK G++D
Sbjct: 361 PNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRID 420

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +A      M   G  PD  +Y+T+++G   +GR   A+
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAE 458



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 23/218 (10%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--- 117
           ++ TG  P+  T + L+N F K GR      +L  +      P+VV++  L++ +CK   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 118 -------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                              PD +TY+T++ G CK G V++++EL  ++  + ++P+ + Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T V+   C +    EA  L  EM+  G  P ++TFN ++   C+   ++ A SLL  M  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GV+ D  TYNTL+DG C  GR+  A++L   M++ GC
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  ++ ++  L K        S+ + +   G  PD+ T+S L+N  CK G++      + 
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVR 352

Query: 96  RILRSCFTPDVVTFTSLI--------------------------KVCKPDAITYNTIIDG 129
            +      P+ VT+ SL+                            C P   TYN +I G
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGG 412

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           LCK G +D A + F +M+ +   P+ V+Y++++ G   +    +A+ +  E+
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP VS++N ++G L K    D  L  F+R+ S G  PD  ++S ++    + GR     +
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEM 459

Query: 93  VLGRI 97
           +L  +
Sbjct: 460 ILSEV 464


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 119/216 (55%), Gaps = 15/216 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  FN+++    K K  D+   L + +   G  P+++T +ILI   CK  RV     +
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L +++                 C P+ +TY+T+I+GLCKQG VD A ELF  M+ +N  P
Sbjct: 242 LEKMVTGG--------------CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPP 287

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVT+  +I G C A    EA++L+  M + G  P+++T+N ++D LCK+ ++DEA  L 
Sbjct: 288 NVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLF 347

Query: 214 DLMIQHGVR-PDAFTYNTLLDGFCLTGRVNHAKELF 248
             + + GV   +A TY+TL  G+   GR+  A  +F
Sbjct: 348 QTIPESGVSAANAVTYSTLFHGYAALGRMADACRIF 383



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  F  M +     P V ++  ++  L K   +D    + + + + G  PD  T S L
Sbjct: 62  EALEHFRAMAK--DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTL 119

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+  CK G     F VL  +++         F ++I ++C                    
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKG 179

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P  + +N +I+G CK   +D A +L   M +K   PNV T+T +I G C AN   EA+
Sbjct: 180 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 239

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  +M+  G  PNVVT++ +++ LCK G++D+A  L  LM +    P+  T+N L+DG 
Sbjct: 240 QLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGL 299

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   R+  A++L+  M   GC
Sbjct: 300 CKAKRIEEARQLYHRMRETGC 320



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V++ + +LG L +  H +  + LF  + + G   D   +++++    +  + +    
Sbjct: 427 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALA 486

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           VL +++               +   P +   + +++ LC+ G  D AK+L  KM ++   
Sbjct: 487 VLEQVI-----------DKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFA 535

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
             V +Y  ++ G      W+EA ++F  M+  G  P + T NV++  LC   K+D+A  L
Sbjct: 536 AAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYEL 595

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M + G  PD  T NTL+ G+C +GR + A++L   M   G
Sbjct: 596 VQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAG 638



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 51/259 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I++   +     D  + L + + S G   +   H+ L+   C  GRV      
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA--- 63

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                       +  F ++ K C PD +TY  ++  LCK G  D+A+ +  +M  +   P
Sbjct: 64  ------------LEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAP 111

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--------------------------- 186
           + VT++++I G C      +A R+  +++ +G+                           
Sbjct: 112 DTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKV 171

Query: 187 ---------QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
                     P V+ FN++++  CK   +D A  LL++MI+ G  P+ FT+  L+ G C 
Sbjct: 172 LGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK 231

Query: 238 TGRVNHAKELFVSMESMGC 256
             RV  A++L   M + GC
Sbjct: 232 ANRVGEAQQLLEKMVTGGC 250



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M R +  PP V + NI++  L K K  +    L+ R+  TG  PD+ T++ 
Sbjct: 271 DDAYELFQLMERRN-CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 329

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK  +V   F +   I  S              V   +A+TY+T+  G    G +
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPES-------------GVSAANAVTYSTLFHGYAALGRM 376

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  +F  + DK   P++ TYTS+I  +C  +   E   L  EM  +G  P V T + +
Sbjct: 377 ADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAV 436

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +  L +    + A  L D M   G   DA  YN +++G     + N A
Sbjct: 437 LGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKA 484



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           + ++C P+  TY  +I G    G +D A +L  +MK    + N V +T++++G C A   
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA   F   M +   P+V+T+  ++  LCK GK DEA  +L  MI  G  PD  T++TL
Sbjct: 61  VEALEHF-RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTL 119

Query: 232 LDGFCLTGRVNHA 244
           +DG C  G    A
Sbjct: 120 IDGLCKFGSEEQA 132



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 24/264 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  +     S     +++ +    A          +F  L   G  PDL T++ 
Sbjct: 341 DEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTS 400

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI  +CK  R      ++  +    F P V T ++++                     + 
Sbjct: 401 LILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG 460

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAK---ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
           C  DA+ YN +++G+ +    +KA    E  +  +D+   P+     +++   C     +
Sbjct: 461 CTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTD 520

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +AK+L  +M ++G    V ++N ++  L +  + DEA+ + + M+  G  P+  T N ++
Sbjct: 521 DAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVI 580

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
              C   +V+ A EL   M  +GC
Sbjct: 581 SWLCSAAKVDDAYELVQRMSKLGC 604



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ M+   P+P  +S+ N+++  L      D    L +R++  G  PD+ T + 
Sbjct: 555 DEATQVFEAMVSAGPAPE-ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNT 613

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           LI  +CK GR      +L  +  +   P+  T
Sbjct: 614 LIGGYCKSGRADLARKLLEEMTEAGLEPNDTT 645


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 56/277 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++  ++  LAKNK  +  ++L +++ + G  P + T++ L+N  CKMGR+     +L 
Sbjct: 267 IHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 326

Query: 96  RILRSCFTPDVVTF-----------------------------------TSLIKV----- 115
           +I+ +  TPDVVT+                                   T+LI+      
Sbjct: 327 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTG 386

Query: 116 ----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                           C PD +T +T+IDGL K G +  A  +F  M+ + + PN V Y+
Sbjct: 387 KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYS 446

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I G C A   + A  +  +M      P+ +T+N+++D LCK+G ++ A +  D M++ 
Sbjct: 447 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA 506

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G +PD +TYN L+ GFC  G  + A  +F  M S  C
Sbjct: 507 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRC 543



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 131/260 (50%), Gaps = 26/260 (10%)

Query: 21  CIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           C  + + +M  +   P   ++N+++  L K+   +   + F  +   G  PD+YT++ILI
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 79  NCFCKMGRVSHGFVVLGR--ILRSCFTPDVVTFTSLIKV--------------------- 115
           + FCK G        L +   +  C T D+ T+T+++                       
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGC-TIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P   TYN +++GLCK G +++A +L  K+ D    P+VVTYTS+I G        EA 
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF EM  +G+  + V +  ++ EL + GK+ +ASS+   M  HG  PD  T +T++DG 
Sbjct: 358 KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGL 417

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR+  A  +F SME+ G
Sbjct: 418 SKAGRIGAAVRIFKSMEARG 437



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++++N +L  L K    +  + L +++   G  PD+ T++ LI+   K  R    + +
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +       D V +T+LI+                      C PD +T +T+IDGL K
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A  +F  M+ + + PN V Y+++I G C A   + A  +  +M      P+ +T
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 198

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +NV++D LCK+G ++ A +  D M++ G +PD +TYN L+ GFC  G  + A
Sbjct: 199 YNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 250



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 15/228 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V + + M+  L+K       + +FK + + GL P+   +S LI+  CK  ++  
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++ ++  TPD +T              YN +IDGLCK G V+ A+  F +M + 
Sbjct: 180 ALEMLAQMKKAFCTPDTIT--------------YNVLIDGLCKSGDVEAARAFFDEMLEA 225

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKR-LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
             KP+V TY  +I GFC A + + A   L  E    G   ++ T+  I+D L KN K++E
Sbjct: 226 GCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEE 285

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           A +L++ +  +G  P   TYN LL+G C  GR+  A +L   +   GC
Sbjct: 286 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 333



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 21/225 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           +  ++L +++ + G  P + T++ L+N  CKMGR+     +L +I+ +  TPDVVT+TSL
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 113 I-------------KVCKP--------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I             K+ K         D + Y  +I  L + G + +A  ++  M     
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+VVT +++I G   A     A R+F  M  +G+ PN V ++ ++  LCK  KMD A  
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L  M +    PD  TYN L+DG C +G V  A+  F  M   GC
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGC 227



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K K       LFK +   GL  D   ++ LI    + G++     V
Sbjct: 335 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSV 394

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      PDVVT +++I                     +   P+ + Y+ +I GLCK
Sbjct: 395 YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 454

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D A E+  +MK     P+ +TY  +I G C + D   A+  F EM++ G +P+V T
Sbjct: 455 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 514

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK G  D A  + D M       +  TY  L+ G C   ++  A   F  M+
Sbjct: 515 YNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMK 574

Query: 253 SMG 255
             G
Sbjct: 575 ERG 577



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 14/191 (7%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V + + M+  L+K       + +FK + + GL P+   +S LI+  CK  ++  
Sbjct: 401 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 460

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++ ++  TPD +T              YN +IDGLCK G V+ A+  F +M + 
Sbjct: 461 ALEMLAQMKKAFCTPDTIT--------------YNILIDGLCKSGDVEAARAFFDEMLEA 506

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
             KP+V TY  +I GFC A + + A  +F +M       NVVT+  ++  LCK  ++ +A
Sbjct: 507 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKA 566

Query: 210 SSLLDLMIQHG 220
           S     M + G
Sbjct: 567 SLYFQHMKERG 577



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 35/155 (22%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A  L  K+      P + TY +++ G C      EA  L  +++D G  P+VVT+  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 196 IMD-----------------------------------ELCKNGKMDEASSLLDLMIQHG 220
           ++D                                   EL + GK+ +ASS+   M  HG
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             PD  T +T++DG    GR+  A  +F SME+ G
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 156



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K++EA +L++ +  +G  P   TYN LL+G C  GR+  A +L   +   GC
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 52


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L KN        +++++   G+FP+LYT++ ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 98  LRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCKQGFV 136
                + ++VT+ +LI                      V  P+ ITYNT+IDG C  G +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  L   +K + + P++VTY  ++ GFC   D + A ++  EM ++G++P+ VT+ ++
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D   ++  M+ A  L   M + G+ PD  TY+ L+ GFC+ G++N A  LF SM
Sbjct: 415 IDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + FN +L  +  +  ++     F   +   +  D+Y+  I+I   C+ G +   F +
Sbjct: 127 PGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDL 185

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGLCK 132
           L  +    F+P+VV +T+LI   CK   I                    TY  +I GL K
Sbjct: 186 LVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFK 245

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +  E++ KM++  V PN+ TY  V+   C      +A ++F EM ++GV  N+VT
Sbjct: 246 NGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVT 305

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  K +EA+ ++D M  + + P+  TYNTL+DGFC  G++  A  L   ++
Sbjct: 306 YNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLK 365

Query: 253 SMG 255
           S G
Sbjct: 366 SRG 368



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 15/235 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M R       + ++N ++G L +    +    +  ++ S  + P+L T++ L
Sbjct: 286 DAFKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC +G+       LG+ L  C   D+ +     +   P  +TYN ++ G C++G   
Sbjct: 345 IDGFCSVGK-------LGKALSLC--RDLKS-----RGLSPSLVTYNVLVSGFCRKGDTS 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ++  +M+++ +KP+ VTYT +I  F  +++   A +L   M + G+ P+V T++V++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLI 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C  G+M+EAS L   M++  + P+   YNT++ G+C  G    A  LF  ME
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDME 505



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 18/236 (7%)

Query: 23  FDYMLRMHP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           FD ++ +     SP  V    ++ GC  K +  +    LF  +   GL  + +T+++LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGE-IEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
              K G    GF +  ++      P++ T              YN +++ LCK G    A
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLYT--------------YNCVMNQLCKDGRTKDA 287

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++F +M+++ V  N+VTY ++I G C     NEA ++  +M    + PN++T+N ++D 
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDG 347

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            C  GK+ +A SL   +   G+ P   TYN L+ GFC  G  + A ++   ME  G
Sbjct: 348 FCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +  NEA  + D M + +   P + ++N ++            LSL + L S GL P L T
Sbjct: 317 MKANEANKVMDQM-KSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVT 375

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------- 117
           +++L++ FC+ G  S    ++  +      P  VT+T LI                    
Sbjct: 376 YNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSME 435

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD  TY+ +I G C +G +++A  LF  M +K ++PN V Y ++I G+C      
Sbjct: 436 ELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSY 495

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
            A RLF +M ++ + PNV +++ ++  LCK  K+ EA  L++ MI  G+ P
Sbjct: 496 RALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP 546



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 14/163 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I++   A++ + +T + L   +   GL PD++T+S+LI+ FC  G+++     
Sbjct: 406 PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEA--- 462

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+ +S             K+ +P+ + YNT+I G CK+G   +A  LF  M++K + P
Sbjct: 463 -SRLFKSMVE----------KMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAP 511

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           NV +Y+ +IR  C      EA+ L  +M+D G+ P+    N+I
Sbjct: 512 NVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 129/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    +      VL L + +   GL P+ YT++ +I   CK G+V+    V
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  ++     PD V +T+LI   CK                    PD ITY  +I GLC+
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A +LF +M  K ++P+ VTYT++I G+C      EA  L  +M+  G+ PN+VT
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  + D LCK G++D A+ LL  M + G+  + +TYN+L++G C  G ++ A +L   ME
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 525

Query: 253 SMG 255
             G
Sbjct: 526 VAG 528



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +FD M +   SP  ++   ++ G L +         LF  +    L PD  T++ 
Sbjct: 375 SSAYRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 433

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------- 121
           LI+ +CK G++   F +  ++L+   TP++VT+T+L   +CK   +              
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 493

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 TYN++++GLCK G +D+A +L   M+     P+ VTYT+++  +C + +   A 
Sbjct: 494 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 553

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+D+ +QP VVTFNV+M+  C +G +++   LL  M++ G+ P+A TYN+L+  +
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+   +    E++  M + G
Sbjct: 614 CIRNNMRATTEIYRGMCAKG 633



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + ML+M  +P  V+ +  +   L K    DT   L   +   GL  ++YT++ L
Sbjct: 446 EAFSLHNQMLQMGLTPNIVT-YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 504

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------- 117
           +N  CK G +     ++  +  + F PD VT+T+L+   CK                   
Sbjct: 505 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 564

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +T+N +++G C  G ++  ++L   M +K + PN  TY S+I+ +C  N+      
Sbjct: 565 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTE 624

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++  M  +GV P+  T+N+++   CK   M EA  L   M+  G      +YN L+ GF 
Sbjct: 625 IYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFY 684

Query: 237 LTGRVNHAKELFVSMESMG 255
              +   A+ELF  M   G
Sbjct: 685 KRKKFLEARELFEQMRREG 703



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 18/237 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-KHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EA  +FD ML  +     V S N+ +  L+++       L +F      G+  +  +++
Sbjct: 199 DEARKLFDKMLN-YGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYN 257

Query: 76  ILINCFCKMGRVSHGFVVLGRI-LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           I+ +  C++GRV     +L ++ LR C                PD I+Y+T+I+G C+ G
Sbjct: 258 IITHSLCQLGRVVEAHQLLLQMELRGCI---------------PDVISYSTVINGYCQVG 302

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +  +L  +M+ K +KPN  TY  VI   C      EA+R+  EM+ +G+ P+ V + 
Sbjct: 303 ELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 362

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++D  CK G +  A  L D M +  + PD  TY  ++ G C TGRV  A +LF  M
Sbjct: 363 TLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 419



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 1/140 (0%)

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
           + VC   A +YN I   LC+ G V +A +L L+M+ +   P+V++Y++VI G+C   +  
Sbjct: 247 VGVCWNTA-SYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQ 305

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              +L  EM  +G++PN  T+N ++  LCK GK+ EA  +L  MI  G+ PD   Y TL+
Sbjct: 306 RVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365

Query: 233 DGFCLTGRVNHAKELFVSME 252
           DGFC  G V+ A  LF  M+
Sbjct: 366 DGFCKLGNVSSAYRLFDEMQ 385



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 21/219 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++  L K  + D  + L K +   G  PD  T++ L++ +CK   +     +L 
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           ++L     P VVTF  L+                     K   P+A TYN++I   C + 
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +    E++  M  K V P+  TY  +I+G C A +  EA  L  +M+ +G    V ++N
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 677

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            ++    K  K  EA  L + M + G+  D   YN   D
Sbjct: 678 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 716



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++    K++       L +++    L P + T ++L+N FC  G +  G  +
Sbjct: 531 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 590

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCK 132
           L  +L     P+  T+ SLIK                 +C     PD  TYN +I G CK
Sbjct: 591 LKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 650

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L   M  K     V +Y ++I+GF     + EA+ LF +M  +G+  +   
Sbjct: 651 ARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREI 710

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           +N+  D     GKM+    L D  I+  +  D  T NT
Sbjct: 711 YNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 748



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 63/117 (53%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++F++  +  V  N  +Y  +    C      EA +L ++M  +G  P+V++++ +++
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C+ G++     L++ M   G++P+ +TYN ++   C TG+V  A+ +   M S G
Sbjct: 297 GYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE-AKRL 177
           D   ++     L + G +D+A++LF KM +  +  +V +    I       D  + A ++
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKV 240

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F+E  + GV  N  ++N+I   LC+ G++ EA  LL  M   G  PD  +Y+T+++G+C 
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQ 300

Query: 238 TGRVNHAKELFVSMESMG 255
            G +    +L   M+  G
Sbjct: 301 VGELQRVLKLIEEMQIKG 318



 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           ++L    KD    P V  +    +    A   +EA++LF +M++ G+  +V + N+ +  
Sbjct: 169 EQLIYTYKDWGSDPRV--FDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISH 226

Query: 200 LCKNGKMDEASSLLDLMIQH---GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L ++  +D     L + ++    GV  +  +YN +    C  GRV  A +L + ME  GC
Sbjct: 227 LSED--LDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGC 284


>gi|225189441|emb|CAR70004.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 278

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 15/230 (6%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           I  I  ++A+ +F  M+R  P P  V  F+     +A+ K ++ VL   K+L   G+  +
Sbjct: 64  IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCKQLELNGIAHN 122

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           +YT +I+INCFC+  +    + VLG++++  + PD  TF              NT+I GL
Sbjct: 123 IYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTF--------------NTLIKGL 168

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
             +G V +A  L  +M +   +P+VVTY S++ G C + D + A  L  +M ++ V+ +V
Sbjct: 169 FLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV 228

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
            T++ I+D LC++G +D A SL   M   G++    TYN+L+ G C  G+
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A  LF +M      P++V ++           +N       ++   G+  N+ T N++
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  C+  K   A S+L  +++ G  PD  T+NTL+ G  L G+V+ A  L   M   GC
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 62/296 (20%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M       P + ++N+++    K        SL K +   G  P+++T+SI+
Sbjct: 194 EAHALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           INC+CK+ +V   + V  +++ S   P+ VTF +LI                       C
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 309

Query: 117 KPDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           K   +TYNT+ID LCK+ G V  A +LF K++   + P +VTY S+I+GFC A   +EA 
Sbjct: 310 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAM 369

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY------- 228
           + F EM +    PNV+T+++++D LCK  +M EA+  L+ M  HG  P   TY       
Sbjct: 370 QYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGF 428

Query: 229 ----------------------------NTLLDGFCLTGRVNHAKELFVSMESMGC 256
                                       NTL+DG C   R N    L   M + GC
Sbjct: 429 CKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGC 484



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 117/255 (45%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+  +  P  V+ FN ++    K    +  + LF  +   G    + T++ L
Sbjct: 261 EAWEVFMKMIESNCVPNAVT-FNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTL 319

Query: 78  INCFCK-MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VC 116
           I+  CK  G V     +  ++  +  TP +VT+ SLI+                     C
Sbjct: 320 IDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKC 379

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ ITY+ +IDGLCK   + +A +    MK     P VVTY  +I GFC   +   A  
Sbjct: 380 APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALL 439

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F +M   G  PN V FN ++D LCK  + ++   LL  M   G +PD  TYN L+ G C
Sbjct: 440 FFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLC 499

Query: 237 LTGRVNHAKELFVSM 251
              RV  A+ LF  M
Sbjct: 500 SANRVEDAQRLFDGM 514



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 22/234 (9%)

Query: 27  LRMHPSPPPVSSFNIML-GCLAKNK---HYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           +R   S     ++N++L G   +NK     +  +  FK + ++G+ PDL ++ IL++   
Sbjct: 128 MRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALS 187

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
             GR++    +               F+++   C PD +TYN ++DG CK G   +A+ L
Sbjct: 188 DSGRMAEAHAL---------------FSAM--TCSPDIMTYNVLMDGYCKIGQTYEAQSL 230

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             ++     +PNV TY+ +I  +C  +   EA  +F++M++    PN VTFN ++   CK
Sbjct: 231 MKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCK 290

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-GRVNHAKELFVSMESMG 255
            G +++A  L   M + G +    TYNTL+D  C   G V  A +LF  +E  G
Sbjct: 291 AGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAG 344



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 36  VSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           + ++N ++  L K +    T + LF +L   GL P + T++ LI  FC   R+S      
Sbjct: 313 IVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYF 372

Query: 95  GRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQ 133
             +   C  P+V+T++ LI  +CK                    P  +TY  +I+G CK 
Sbjct: 373 DEMEGKC-APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKC 431

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G +  A   F KMK     PN V + ++I G C A   N+  RL   M  +G +P+V+T+
Sbjct: 432 GELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITY 491

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N ++  LC   ++++A  L D M      P+  T+N L+ G C   +V  A+ + 
Sbjct: 492 NCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 28/248 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+ N +L  L +     + L LF+ + +    P   +H+IL+  F   GRV      
Sbjct: 65  PNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAH 124

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC------------------------KPDAITYNTIID 128
           L  + +S  +    T+  ++K +C                        +PD  +Y+ ++ 
Sbjct: 125 LQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLS 184

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L   G + +A  LF  M      P+++TY  ++ G+C      EA+ L  E++  G +P
Sbjct: 185 ALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 241

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NV T+++I++  CK  K++EA  +   MI+    P+A T+NTL+ GFC  G +  A +LF
Sbjct: 242 NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLF 301

Query: 249 VSMESMGC 256
             ME +GC
Sbjct: 302 AEMEKIGC 309



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 25/202 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++      +     +  F  +      P++ T+SILI+  CK+ R+      
Sbjct: 347 PTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKT 405

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +    +TP VVT+  LI                       C P+ + +NT+IDGLCK
Sbjct: 406 LEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCK 465

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               +    L   M  +  KP+V+TY  +I G C AN   +A+RLF  M      PNV T
Sbjct: 466 AERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTT 522

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
           FN ++  LC   K++EA ++LD
Sbjct: 523 FNFLIRGLCAQKKVEEARNILD 544



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 28/241 (11%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N +L  L   + +D  L LFK + +    P+ +T+++LI  FCK G++     V   +  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 100 SCFTPDVVTF-TSLIKVCK--------------------PDAITYNTIIDGLCKQGFVDK 138
           S   P+  T  T L+ +C+                    P + ++N ++ G    G V  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPNVVTFN 194
           A      M+  +      TY  V++G C+    AN   +A   F EM   GV+P++ +++
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++  L  +G+M EA +L   M      PD  TYN L+DG+C  G+   A+ L   +   
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 255 G 255
           G
Sbjct: 238 G 238


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +FN ++  L +        +L  R+   G  P+  T+  ++N  CKMG       +L 
Sbjct: 10  VVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLR 69

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           ++  S    DVV +T+              IID LCK G   KA+ LF +M DK + PNV
Sbjct: 70  KMDESHIKADVVIYTA--------------IIDRLCKDGHHSKAQNLFTEMHDKGIFPNV 115

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY  +I G C    W +A++L  +M++  V P+VVTFN +++   K GK+ EA  L   
Sbjct: 116 LTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYRE 175

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+   + PD  TYN+L+DGFC   R++ AK +F  M S G
Sbjct: 176 MLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKG 215



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 121/208 (58%), Gaps = 14/208 (6%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L K+ H+    +LF  ++  G+FP++ T++ +I+  C  G+ +    +L  ++ S   PD
Sbjct: 90  LCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPD 149

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           VVTF              N +I+   K+G + +A+EL+ +M  +N+ P+ +TY S+I GF
Sbjct: 150 VVTF--------------NALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGF 195

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C  +  ++AK +F  M+ +G  PNV+T N ++   C+  ++D+   LL  M++ G+ PD+
Sbjct: 196 CKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDS 255

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +YNTL+ GFC  G +N A++LF  M S
Sbjct: 256 VSYNTLIHGFCQAGDLNAAQDLFQEMIS 283



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 35/173 (20%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFV-----------------------------------DK 138
           K C+ D + +NT+++GLC++G V                                   D 
Sbjct: 4   KGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDS 63

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L  KM + ++K +VV YT++I   C     ++A+ LF EM D+G+ PNV+T+N ++D
Sbjct: 64  ALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMID 123

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             C  GK  +A  LL  MI+  V PD  T+N L++ F   G+++ A+EL+  M
Sbjct: 124 GCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREM 176



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M +K  + +VV + +++ G C      EA+ L   M++ G QPN VT+  I++ +CK G 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            D A +LL  M +  ++ D   Y  ++D  C  G  + A+ LF  M   G
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKG 110



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  IFD M+    S P V + N ++G   + K  D  + L   +   GL PD  +++ 
Sbjct: 202 DDAKHIFDLMVSKGGS-PNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNT 260

Query: 77  LINCFCKMG 85
           LI+ FC+ G
Sbjct: 261 LIHGFCQAG 269


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IF+  +R     P   SFN ++  L K+++ D    L K +    ++PD++T+S+L
Sbjct: 241 DAKLIFNE-IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+  CK GR+     +   + +    P+ +TFT+LI                        
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGV 359

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD + YNT+++GLCK G V+KA++L  +MK   +KP+ +TYT++I G+C   D   A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M ++GV  + V F  ++   C++G++ +A   L  M++ G++PD  TY  ++DG+C
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYC 479

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V    +L   M+  G
Sbjct: 480 KKGNVKMGFKLLKEMQING 498



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 21/223 (9%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
           T+ + +  +   G  P +  ++ILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 114 K-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
             +CK                    PD  TY+ +I GLCK+G +D A++LF +M+ + ++
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN +T+T++I G   +   + A   + +M+  GV+P++V +N +++ LCK G +++A  L
Sbjct: 326 PNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D M   G++PD  TY TL+DG+C  G +  A E+   M   G
Sbjct: 386 VDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 22/241 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M +    P  ++ F  ++    +++  D+ ++ + ++ + G+ PDL  ++ L+N  
Sbjct: 315 LFDEMQQRGLRPNGIT-FTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DA 120
           CK+G V+    ++  +      PD +T+T+LI   CK                     D 
Sbjct: 374 CKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + +  +I G C+ G V  A+    +M +  +KP+  TYT VI G+C   +     +L  E
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G +P V+T+NV+M+ LCK G+M  A+ LL+ M+  GV PD  TYN LL+G C  G+
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553

Query: 241 V 241
            
Sbjct: 554 A 554


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 19/241 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSI 76
           E++ +F  M  +  SP  V +FN +L  + K         LF + L++ G+ PD YT +I
Sbjct: 254 ESIKVFKTMKEIGVSPS-VVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNI 312

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC    V  GF          F  ++  F      C PD +TYNT++DGLC+ G V
Sbjct: 313 LIRGFCMNSMVDEGF---------WFFKEMSRFK-----CDPDVVTYNTLVDGLCRAGKV 358

Query: 137 DKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             A  +   M  K  N+ PNVVTYT++IRG+C   D  EA  L  EM+ +G++PN +T+N
Sbjct: 359 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 418

Query: 195 VIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            ++  LC+  K+D+   +L+ M+   G  PD  T NTL+   C  G++  A  +F  M  
Sbjct: 419 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSE 478

Query: 254 M 254
           +
Sbjct: 479 L 479



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 31/265 (11%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML  +   P   +FNI++     N   D     FK ++     PD+ T++ L++  
Sbjct: 293 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 352

Query: 82  CKMGRVSHGF-VVLGRILRSC-FTPDVVTFTSLIK-VC--------------------KP 118
           C+ G+V     VV G + +S   +P+VVT+T+LI+  C                    KP
Sbjct: 353 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 412

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           + ITYNT+I GLC+   +DK KE+   M  D    P+  T  ++I+  C      EA  +
Sbjct: 413 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 472

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDAFTYNT 230
           F +M +  VQP+  T++V++  LC+ G    A    D + +        G +P    YN 
Sbjct: 473 FEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNP 532

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           + +  C  G+   A+ +F  +   G
Sbjct: 533 MFEYLCSNGKTKKAERVFRQLMKRG 557



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 31/252 (12%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSI 76
           EAL +   M+     P  ++ +N ++  L + +  D +  + + +   G F PD  T + 
Sbjct: 397 EALSLLAEMVSRGLKPNKIT-YNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNT 455

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI   C MG++   F V  ++      PD  T++ L++                      
Sbjct: 456 LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 515

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                  CKP    YN + + LC  G   KA+ +F ++  +  + +  +Y ++I G C  
Sbjct: 516 ILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCRE 574

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
                   L + M+ +   P+  T+ +++D L K G    A   L+ M++    P    +
Sbjct: 575 GTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIF 634

Query: 229 NTLLDGFCLTGR 240
           +++L       R
Sbjct: 635 HSILAALVEKER 646



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +GF    +  FL ++      N+    + +      +   E+ ++F  M + GV P+VVT
Sbjct: 214 KGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVT 273

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           FN ++  + K G+   A  L D M+  +GV PD +T+N L+ GFC+   V+     F  M
Sbjct: 274 FNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 333

Query: 252 ESMGC 256
               C
Sbjct: 334 SRFKC 338



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 39/243 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N M   L  N        +F++L   G   D  ++  LI   C+ G    GF +
Sbjct: 525 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGT-QDPPSYKTLILGHCREGTPEAGFDL 583

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG---FVDKAKELFLKM---- 146
           L  +LR  F PD              A TY  +IDGL K+G      K+ E  LK     
Sbjct: 584 LVLMLRRDFVPD--------------AETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLP 629

Query: 147 --------------KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                         K++ ++ N+   T  +R   Y +   +   + I ++ +     +V 
Sbjct: 630 TTAIFHSILAALVEKERRIRQNIDLSTHTVR-LLYKSGLQDKAFMTIGLLYE--NGYLVK 686

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              ++  LC++ K+ EA  +L   ++     D    +T++ G C   +V+ A  L+  + 
Sbjct: 687 MEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELV 746

Query: 253 SMG 255
             G
Sbjct: 747 EKG 749



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 32/231 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG---RVSHG 90
           P   + N ++         +   S+F++++   + PD  T+S+L+   C+ G   R    
Sbjct: 448 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 507

Query: 91  FVVLG-----------RILRSCFTP-------------DVVTFTSLIKVCKPDAITYNTI 126
           F  L            + L + + P                 F  L+K    D  +Y T+
Sbjct: 508 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTL 567

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I G C++G  +   +L + M  ++  P+  TY  +I G     D   A +   +M+    
Sbjct: 568 ILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSH 627

Query: 187 QPNVVTFNVIMDELCKNGK-----MDEASSLLDLMIQHGVRPDAFTYNTLL 232
            P    F+ I+  L +  +     +D ++  + L+ + G++  AF    LL
Sbjct: 628 LPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLL 678



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 9/201 (4%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL---SLFKRLNSTGLFPDL 71
           TP     +   MLR     P   ++ +M+  L K    D VL   SL K L S+ L    
Sbjct: 576 TPEAGFDLLVLMLR-RDFVPDAETYGLMIDGLLKKG--DPVLAHKSLEKMLKSSHLPTTA 632

Query: 72  YTHSILINCFCKMGRVSHGFVVLG---RILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
             HSIL     K  R+     +     R+L      D    T  +       +    ++ 
Sbjct: 633 IFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVS 692

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LC+   + +A+++ L   +K    ++   ++VI G C A+  +EA  L+ E++++G+Q 
Sbjct: 693 FLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQH 752

Query: 189 NVVTFNVIMDELCKNGKMDEA 209
            +     +   L   G+++EA
Sbjct: 753 RLTCQEDLRISLEAEGRLNEA 773


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 129/266 (48%), Gaps = 30/266 (11%)

Query: 4   KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN 63
           KSSG G        EA+ + D M R     P + ++N+++  + +    D    +  RL+
Sbjct: 199 KSSGFG--------EAMNVLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLS 249

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------- 115
           S G  PD+ +++ ++   C   R     V+   ++     P+ VTF  L++         
Sbjct: 250 SYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVE 309

Query: 116 -------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                        C P+    N +I+ +CKQG VD A +    M      P+ ++YT+V+
Sbjct: 310 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVL 369

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           RG C A  W  AK L  EM+ +   PN VTFN  +  LC+ G +++A  L++LM ++G  
Sbjct: 370 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCS 429

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELF 248
               TYN L+ GFC+ GRV+ A ELF
Sbjct: 430 VGIVTYNALVHGFCVQGRVDSALELF 455



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ ++L  + K+  +   +++   + + G  P++ T++++IN  C+ GRV     +
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 244

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+    F PD+V++T              T++ GLC     D  K LF +M DK   P
Sbjct: 245 LNRLSSYGFQPDIVSYT--------------TVLKGLCAARRWDDVKVLFAEMVDKKCVP 290

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N VT+  ++R FC       A ++  +M   G  PN    N++++ +CK G++D+A   L
Sbjct: 291 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFL 350

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M  +G  PD  +Y T+L G C  GR  HAKEL   M    C
Sbjct: 351 NNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC 393



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+  +L  L   + +D V  LF  +      P+  T  +L+  FC+ G V     V
Sbjct: 255 PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQV 314

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L ++ +   TP+      +I                       C PD I+Y T++ GLC+
Sbjct: 315 LQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCR 374

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  + AKEL  +M  KN  PN VT+ + I   C      +A +L   M + G    +VT
Sbjct: 375 AGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVT 434

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   C  G++D A   L+L       P+  TY TLL G C   R++ A EL   M 
Sbjct: 435 YNALVHGFCVQGRVDSA---LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMI 491

Query: 253 SMGC 256
              C
Sbjct: 492 QKDC 495



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 59/285 (20%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P  +  NI++  + K    D        +   G  PD  +++ ++   C+ GR
Sbjct: 318 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 377

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
             H   +L  ++R    P+ VTF + I +                     C    +TYN 
Sbjct: 378 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 437

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM---- 181
           ++ G C QG VD A ELF  +     +PN +TYT+++ G C+A   + A  L  EM    
Sbjct: 438 LVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKD 494

Query: 182 -------------------------------MDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
                                          M+ G  PN++TFN ++D + K+   +EA 
Sbjct: 495 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEAL 554

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  ++  GV  D  TY++++D      R   A ++  +++ MG
Sbjct: 555 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMG 599



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 66/111 (59%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  +  +P+VVTYT ++   C ++ + EA  +  EM  +G  PN+VT+NVI++ +C+ G+
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D+A  +L+ +  +G +PD  +Y T+L G C   R +  K LF  M    C
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 288



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++         D+ L LF  L      P+  T++ L+   C   R+     +L 
Sbjct: 432 IVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLA 488

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +++     + VTF  L+                       C P+ IT+NT++DG+ K  
Sbjct: 489 EMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDC 548

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL   +  K V  + +TY+SV+      +   EA ++   + D G++P V  +N
Sbjct: 549 NSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYN 608

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+  LCK  + D+A      M+ +G  P+  TY  L++G    G +  A+ +   + + 
Sbjct: 609 KILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAK 668

Query: 255 G 255
           G
Sbjct: 669 G 669



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 15/170 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ + + M+  H   P + +FN +L  + K+ + +  L L   L S G+  D  T+S 
Sbjct: 516 EEAMELVNQMME-HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSS 574

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++   +  R      +L  +      P V                YN I+  LCK+   
Sbjct: 575 VVDVLSREDRTEEAIQMLHAVQDMGMRPKVG--------------MYNKILFALCKRCET 620

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           D+A + F  M      PN  TY  +I G  +     EA+ +  E+  +GV
Sbjct: 621 DQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 670


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R   + P   S N +L  L+K+ +   V   F  +   G+ P ++T++++I+  CK G 
Sbjct: 186 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 245

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI----KV-----------------CKPDAITYNT 125
           + +   +  ++     +PDVVT+ SLI    KV                 C PD ITYN 
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 305

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+  CK   + +A E F +MK+  +KPNVVTY+++I  FC       A +L  +M   G
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + PN  T+  ++D  CK G + EA  LL+ M+Q GV+ +  TY  LLDG C  GR+  A+
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 246 ELFVSM 251
           E+F SM
Sbjct: 426 EVFRSM 431



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 14/225 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++N ++    K    + V SLF  +   G  PD+ T++ LINC+CK  +
Sbjct: 256 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +   F     +  +   P+VVT              Y+T+ID  CK+G +  A +L   M
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVT--------------YSTLIDAFCKEGMMQGAIKLLXDM 361

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           +   + PN  TYTS+I   C A +  EA +L  +M+  GV+ N+VT+  ++D LCK G+M
Sbjct: 362 RRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRM 421

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            EA  +   M++ G+ P+   Y  L+ G+    R+  A ++   M
Sbjct: 422 IEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 466



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++ C  K +        F  + + GL P++ T+S LI+ FCK G +     +
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 357

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
           L  + R+   P+  T+TSLI   CK                     + +TY  ++DGLCK
Sbjct: 358 LXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 417

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+E+F  M    + PN   YT+++ G+  A    +A ++  +M +  ++P+++ 
Sbjct: 418 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 477

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I+   C   K++E   +L+ M   G+  +     T++D +   G+ + A   F  M+
Sbjct: 478 YGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQ 537

Query: 253 SMG 255
            +G
Sbjct: 538 DVG 540



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 80/138 (57%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   TYN +ID LCK+G ++ ++ LF++M++  + P+VVTY S+I G+       E   L
Sbjct: 228 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM D G  P+++T+N +++  CK  KM  A      M  +G++P+  TY+TL+D FC 
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A +L   M   G
Sbjct: 348 EGMMQGAIKLLXDMRRTG 365



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  ML+   SP     +  ++    K +  +  + + K++    + PDL  +  +
Sbjct: 423 EAEEVFRSMLKDGISPNQ-QVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 481

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I   C   ++    ++L  +     + + V  T++I                        
Sbjct: 482 IWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV 541

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +   +TY  +IDGLC+ G V+ A + F +M    ++PNV  YTS+I G C  N    AK+
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKK 601

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM  +G+ P++  F  ++D   K+G + EA  L+  M +  +  D   Y +L+ GF 
Sbjct: 602 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFS 661

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++ A++ F  M   G
Sbjct: 662 QCGELHQARKFFNEMIEKG 680



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E   I + M     S  PV S  I+       K  D  L+ F+ +   G+   + T+ +
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA-LNFFQEMQDVGVEATIVTYCV 550

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G V        R+L     P+V  +TSL              IDGLC    +
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSL--------------IDGLCXNNCI 596

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + AK+LF +M+ + + P++  +T++I G     +  EA  L   M +  ++ ++  +  +
Sbjct: 597 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 656

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +    + G++ +A    + MI+ G+ P+      LL  +   G+++ A EL   ME M 
Sbjct: 657 VSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMA 715



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +C   +  ++ +     + G +++A E F +M++    P   +   ++     + +    
Sbjct: 155 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 214

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++ F +M+  G+ P+V T+NV++D LCK G ++ +  L   M + G+ PD  TYN+L+DG
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 274

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +   G +     LF  M+ +GC
Sbjct: 275 YGKVGSLEEVASLFNEMKDVGC 296


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 21/241 (8%)

Query: 18  EALCIFDYMLRMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +A  IFD M    PS    P + SF+ ++G L+KN   D  L  F+ + + GL PD   +
Sbjct: 481 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 536

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +ILI  FC+ G +S    V   +L               + C  D +TYNTI++GLCK+ 
Sbjct: 537 TILIGGFCRNGVMSEALKVRDEMLE--------------QGCXLDVVTYNTILNGLCKEK 582

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A ELF +M ++ V P+  T+T++I G+    + N+A  LF  M+ + ++P+VVT+N
Sbjct: 583 MLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYN 642

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D  CK  +M++ + L + MI   + P+  +Y  L++G+C  G V+ A  L+  M   
Sbjct: 643 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 702

Query: 255 G 255
           G
Sbjct: 703 G 703



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D ML        V ++N +L  L K K       LF  +   G+FPD YT + 
Sbjct: 550 SEALKVRDEMLE-QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 608

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN + K G ++    +   +++              +  KPD +TYNT+IDG CK   +
Sbjct: 609 LINGYXKDGNMNKAVTLFEMMIQ--------------RNLKPDVVTYNTLIDGFCKGSEM 654

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K  EL+  M  + + PN ++Y  +I G+C     +EA RL+ EM+++G +  ++T N I
Sbjct: 655 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 714

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G   +A   L  M+  G+ PD  TYNTL++GF     ++ A  L   ME+ G
Sbjct: 715 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 773



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    +    +    L   ++  GL P ++T++ +IN  CK G+      V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L  +L+   +PD  T+  L+  C                      PD ++++ +I  L K
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A + F  MK+  + P+ V YT +I GFC     +EA ++  EM++QG   +VVT
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N I++ LCK   + EA  L   M + GV PD +T+ TL++G+   G +N A  LF  M
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM 629



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L KN+  +   S    +   G+FPD+ T++ LIN +C+ G +   F ++ 
Sbjct: 358 VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM- 416

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                    D ++   L    KP   TYN II+GLCK G   +AK +  +M    + P+ 
Sbjct: 417 ---------DSMSGKGL----KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C  ++  +A+R+F EM  QGV P++V+F+ ++  L KNG +D+A      
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 523

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G+ PD   Y  L+ GFC  G ++ A ++   M   GC
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 564



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 18/238 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F+ M++ +  P  V ++N ++    K    + V  L+  + S  ++P+  ++ I
Sbjct: 620 NKAVTLFEMMIQRNLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 678

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +C MG VS  F +   ++   F   +              IT NTI+ G C+ G  
Sbjct: 679 LINGYCNMGCVSEAFRLWDEMVEKGFEATI--------------ITCNTIVKGYCRAGNA 724

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E    M  K + P+ +TY ++I GF    + + A  L  +M + G+ P+V+T+NVI
Sbjct: 725 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 784

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++   + G+M EA  ++  MI+ GV PD  TY +L++G       N+ KE F   + M
Sbjct: 785 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ---NNLKEAFRVHDEM 839



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +++ N +LG L K    D    +++ +  +G+  ++YT +I+IN  CK  ++ +      
Sbjct: 323 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIEN------ 376

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                 F  D+       K   PD +TYNT+I+  C+QG +++A EL   M  K +KP V
Sbjct: 377 ---TKSFLSDMEE-----KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 428

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G C    +  AK +  EM+  G+ P+  T+N+++ E C+N  M +A  + D 
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 488

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   GV PD  +++ L+      G ++ A + F  M++ G
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---CKPDAITYNTII 127
           L + S +I+   +  R+     V+ R++R      V    SL+     C  + + ++ ++
Sbjct: 236 LQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLV 295

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
               +   + +  E F  +K K +  ++    S++ G       + A  ++ E++  GVQ
Sbjct: 296 RTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQ 355

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            NV T N++++ LCKN K++   S L  M + GV PD  TYNTL++ +C  G +  A EL
Sbjct: 356 VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFEL 415

Query: 248 FVSMESMG 255
             SM   G
Sbjct: 416 MDSMSGKG 423


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M  M      + S+ IML   A       +  LF  + S G+ PD +  ++L
Sbjct: 339 DARDVFDSM-AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVL 397

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K G +    ++   +      PDVVT              Y+T+I  LC+ G +D
Sbjct: 398 IKAYAKCGMLDRATIIFNEMREQGVEPDVVT--------------YSTVIAALCRIGKMD 443

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A E F +M D+ V P++ TY  +I+GFC   D  +AK L ++MM++G++P++  FN I+
Sbjct: 444 DAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFII 503

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G++ +A ++ D  I  G+ P+   YNTL+DG+CL G++ +A  +F  M S G
Sbjct: 504 NNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG 561



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 25/264 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P   L  F  +L+       +   N++ G     +  + +  L  R+   G  PD++++ 
Sbjct: 124 PKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYC 183

Query: 76  ILINCFC---KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVC------ 116
           I++   C   K G+      ++      C  P+ V + ++I          K C      
Sbjct: 184 IVLKSLCSDRKSGQADELLRMMAEGGAVCL-PNAVAYNTVIDGFFKEGDVNKACDLFNEM 242

Query: 117 -----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD  TYN +++ LCK   +DKA+ +  +M DK V P+  TY S+I G+     W
Sbjct: 243 VQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQW 302

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA R+  +M  QG+ P+VVT N +M  LCK+GK+ +A  + D M   G + D F+Y  +
Sbjct: 303 KEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIM 362

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           L+G+   G +    ELF  M S G
Sbjct: 363 LNGYATKGCLVDLTELFNLMLSDG 386



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FN+++   AK    D    +F  +   G+ PD+ T+S +I   C++G++      
Sbjct: 389 PDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEK 448

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++     P + T+  LI                     K  +PD   +N II+ LCK
Sbjct: 449 FNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCK 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V  A+ +F       + PNV+ Y +++ G+C       A R+F  M+  G+QPNVV 
Sbjct: 509 LGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVV 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++  CK G++DE  SL   ++  G++P    YN +L G    GR   AK  F  M 
Sbjct: 569 YGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMT 628

Query: 253 SMG 255
             G
Sbjct: 629 ESG 631



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 36/278 (12%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T  P EA  +FD +L    +P P    N  L  LA+              ++LF R++  
Sbjct: 40  TFRPEEAHDLFDELLH-QATPVPGRQLNGFLAALARAPASAACRDGPALAVALFNRVSRA 98

Query: 66  G----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------- 114
                L P L+T+ IL++C  +  R        G++L++    D +  ++L++       
Sbjct: 99  HGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKR 158

Query: 115 ---------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVT 157
                           C PD  +Y  ++  LC      +A EL   M +      PN V 
Sbjct: 159 TAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVA 218

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +VI GF    D N+A  LF EM+ +G+ P++ T+N +++ LCK   MD+A ++L  M+
Sbjct: 219 YNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMV 278

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             GV PD +TYN+L+ G+  TG+   A  +   M S G
Sbjct: 279 DKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQG 316



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 26/258 (10%)

Query: 24  DYMLRMHPSP-----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           D +LRM         P   ++N ++    K    +    LF  +   G+ PDL T++ ++
Sbjct: 199 DELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVV 258

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
           N  CK   +     +L +++     PD  T+ SLI             +V K        
Sbjct: 259 NALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGIL 318

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +T N+++  LCK G +  A+++F  M  K  K ++ +Y  ++ G+       +   L
Sbjct: 319 PDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTEL 378

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M+  G+ P+   FNV++    K G +D A+ + + M + GV PD  TY+T++   C 
Sbjct: 379 FNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCR 438

Query: 238 TGRVNHAKELFVSMESMG 255
            G+++ A E F  M   G
Sbjct: 439 IGKMDDAVEKFNQMIDQG 456



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  IF+ M R     P V +++ ++  L +    D  +  F ++   G+ P + T+  
Sbjct: 408 DRATIIFNEM-REQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI  FC  G +     ++ +++     PD+  F  +I  +CK                  
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ + YNT++DG C  G ++ A  +F  M    ++PNVV Y +++ G+C     +E  
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGL 586

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF E++ +G++P+   +N+I+  L + G+   A      M + G+  D +TY+ +L G 
Sbjct: 587 SLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGL 646

Query: 236 CLTGRVNHAKELFVSMESM 254
                 + A  LF  + +M
Sbjct: 647 FKNSCSDEAILLFKELHAM 665



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 19/241 (7%)

Query: 18  EALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +A  IFD+ +   +HP+   V  +N ++         +  L +F  + S G+ P++  + 
Sbjct: 514 DAQNIFDFTISIGLHPN---VMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYG 570

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L+N +CK+GR+  G  +   IL               K  KP    YN I+ GL + G 
Sbjct: 571 TLVNGYCKVGRIDEGLSLFREILH--------------KGIKPSTTLYNIILHGLFQAGR 616

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
              AK  F +M +  +  +  TY+ V+ G    +  +EA  LF E+    V+ ++ T N+
Sbjct: 617 TVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNI 676

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  + +  +++EA  L   + + G+ P   TY+ ++      G V  A ++F SME+ G
Sbjct: 677 MIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736

Query: 256 C 256
           C
Sbjct: 737 C 737



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ++  L K        ++F    S GL P++  ++ L++ +C +G++ +   V
Sbjct: 494 PDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRV 553

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++ +   P+VV               Y T+++G CK G +D+   LF ++  K +KP
Sbjct: 554 FDVMVSAGIQPNVVV--------------YGTLVNGYCKVGRIDEGLSLFREILHKGIKP 599

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +   Y  ++ G   A     AK  F EM + G+  +  T+++++  L KN   DEA  L 
Sbjct: 600 STTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLF 659

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +    V+ D  T N ++ G     RV  AK+LF S+   G
Sbjct: 660 KELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSG 701



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 23/243 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +FD M+     P  V  +  ++    K    D  LSLF+ +   G+ P    ++I++
Sbjct: 550 ALRVFDVMVSAGIQPN-VVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 79  NCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV-CK 117
           +   + GR                     ++  V+ G    SC    ++ F  L  +  K
Sbjct: 609 HGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVK 668

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D  T N +I G+ +   V++AK+LF  +    + P+VVTY+ ++          EA  +
Sbjct: 669 IDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDM 728

Query: 178 FIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           F  M + G  QPN    N ++ EL +  ++  A + L  + +     D  T   L+D F 
Sbjct: 729 FSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFS 788

Query: 237 LTG 239
             G
Sbjct: 789 SKG 791


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N ML  L K      V S++K +    +  ++ T  ++IN  CK+G+      V+  +
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM 255

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
               F+P V              ITYNTIIDG CK G + KA  L  +M  K + PN +T
Sbjct: 256 KAWGFSPSV--------------ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +  +I GFC   +   AK++F EM  QG+QPNVVT+N +++ LC NGK+DEA  L D M 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G++P+  TYN L++GFC    +  A+E+   +   G
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F++++  L K   +     + + + + G  P + T++ +I+ +CK G++     +L 
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            ++     P+ +TF  LI                     +  +P+ +TYN++I+GLC  G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A  L  KM    +KPNVVTY ++I GFC      EA+ +  ++  +G+ PNV+TFN
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D   K G+MD+A  L  +M+  GV P+  TYN L+ GFC  G V  A++L   ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 255 G 255
           G
Sbjct: 469 G 469



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 27/252 (10%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R+HP+     +FNI++    ++++      +F+ +   GL P++ T++ LIN  C  G++
Sbjct: 294 RIHPNEI---TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTI 126
                +  ++      P+VVT+ +LI   CK                    P+ IT+NT+
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ID   K G +D A  L   M D  V PNV TY  +I GFC   +  EA++L  EM   G+
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLD---LMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           + ++VT+N+++D LCK G+  +A  LLD   LM + G R +  TYN L+ GFC  G++  
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 530

Query: 244 AKELFVSMESMG 255
           A  L   M   G
Sbjct: 531 ANRLLNEMLEKG 542



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 27/237 (11%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M R     P V ++N ++  L  N   D  L L  +++  GL P++ T++ LIN F
Sbjct: 321 VFEEMQR-QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPD 119
           CK   +     +L  I +    P+V+TF +LI                       VC P+
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PN 438

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TYN +I G C++G V +A++L  +M+   +K ++VTY  ++   C   +  +A RL  
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 180 EMM---DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           EM     +G + N+VT+NV++   C  GK++EA+ LL+ M++ G+ P+  TY+ L D
Sbjct: 499 EMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 25/212 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D M  M   P  V ++N ++    K K       +   +   GL P++ T + 
Sbjct: 351 DEALGLQDKMSGMGLKPN-VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ + K GR+   F++   +L +   P+V T+  LI                       
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKM---KDKNVKPNVVTYTSVIRGFCYANDWN 172
            K D +TYN ++D LCK+G   KA  L  +M   + K  + N+VTY  +I+GFC      
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLE 529

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           EA RL  EM+++G+ PN  T++++ DE+ + G
Sbjct: 530 EANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 561



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+  LC F +  +   +   V  F  +L  LA  K+Y+ + +L             Y++S
Sbjct: 87  PDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAH----YSNS 142

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-------DAITYNTIID 128
            + +    +G       ++  +L   +  +     +L    +         A++ N ++ 
Sbjct: 143 TIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLV 202

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K+G +   + ++ +M  + +  NVVT+  VI G C    + +A  +  +M   G  P
Sbjct: 203 SLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSP 262

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V+T+N I+D  CK GKM +A +LL  M+   + P+  T+N L+DGFC    V  AK++F
Sbjct: 263 SVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVF 322

Query: 249 VSMESMG 255
             M+  G
Sbjct: 323 EEMQRQG 329


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           P+ YT++ LI+  C+ G+V     VL  +L     PDVVT+  L++              
Sbjct: 165 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 224

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C P+ +TYN ++DG+C +G VD A EL   +     KP+ V Y +V++G C 
Sbjct: 225 IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 284

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W +A  L  EM+ +   PN  TFNV++  LC+ G + +A  LL+ M +HG   +  T
Sbjct: 285 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 344

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           YN +++G C    V+ A  L   M+S GC
Sbjct: 345 YNAIINGLCEQRNVDGAMGLLSKMKSYGC 373



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D ML      P V ++NI+L    K + Y   + L   + + G  P+  T+++L
Sbjct: 185 DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 243

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           ++  C  G V     +L  +      P  V + +++K                      C
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T+N +I  LC++G + +A +L  KM       N+VTY ++I G C   + + A  
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 363

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M   G +P++VT+N ++  LC   +  +A  L+D M Q+G  PD  T+NTL+   C
Sbjct: 364 LLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 423

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A E+F  M   GC
Sbjct: 424 QKGLMVDAIEVFKQMPDKGC 443



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 56/281 (19%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR +  PP  ++FN+++  L +       + L ++++  G   ++ T++ +IN  C+  
Sbjct: 298 MLREN-CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQR 356

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
            V     +L ++      PD+VT+ +L+K                      C PD +T+N
Sbjct: 357 NVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFN 416

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM--- 181
           T+I  LC++G +  A E+F +M DK   PN +TY+++I G   A   ++A  LF EM   
Sbjct: 417 TLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHK 476

Query: 182 -------------------------------MDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
                                           D G+ P+ V +N I+  LC+NGK + A 
Sbjct: 477 GFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 536

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++  M+  G  PD  TY  L++G    G +N A+EL + +
Sbjct: 537 DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P   ++N+++  +      D  L L + L S G  P    ++ +
Sbjct: 220 QAMELIDLM-RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 278

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +   C   R      ++  +LR    P+  TF  +I                       C
Sbjct: 279 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 338

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + +TYN II+GLC+Q  VD A  L  KMK    KP++VTY ++++G C A  W +A+ 
Sbjct: 339 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEE 398

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M   G  P+ VTFN ++  LC+ G M +A  +   M   G  P++ TY+T++ G  
Sbjct: 399 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 458

Query: 237 LTGRVNHAKELFVSMESMG 255
              +++ A ELF  M   G
Sbjct: 459 KATKLDQALELFNEMGHKG 477



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 23/237 (9%)

Query: 23  FDYMLRM---HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
            D  LR+    P PP  +  N ++  L +    D      + + + G    +  +  L +
Sbjct: 87  LDAALRLVESSPRPPDAALANRLVRDLCRRGRPDDA---ERVVGACGPAATVVAYGALTD 143

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            +C+ GR+     V+G +                   +P+A TYN +I  LC++G V  A
Sbjct: 144 GYCRAGRLGDARRVVGGM-----------------PVQPNAYTYNPLIHTLCERGQVRDA 186

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             +   M  +   P+VVTY  ++   C    + +A  L   M  +G  PN VT+NV+MD 
Sbjct: 187 LSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDG 246

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +C  G +D+A  LL  +  HG +P    YNT+L G C   R   A EL   M    C
Sbjct: 247 MCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN ++G L +       + +FK++   G  P+  T+S +I+   K  ++     +   +
Sbjct: 414 TFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 473

Query: 98  LRSCFTPDVV------------TFTSLIKVCK--------PDAITYNTIIDGLCKQGFVD 137
               F PD +            T    I+  +        P  + YN I+ GLC+ G  +
Sbjct: 474 GHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTE 533

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
            A ++   M      P+ +TY  +I G  Y    NEA+ L I++  + V
Sbjct: 534 FAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDV 582


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 21/241 (8%)

Query: 18  EALCIFDYMLRMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +A  IFD M    PS    P + SF+ ++G L+KN   D  L  F+ + + GL PD   +
Sbjct: 377 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 432

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +ILI  FC+ G +S    V   +L               + C  D +TYNTI++GLCK+ 
Sbjct: 433 TILIGGFCRNGVMSEALKVRDEMLE--------------QGCVLDVVTYNTILNGLCKEK 478

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A ELF +M ++ V P+  T+T++I G+    + N+A  LF  M+ + ++P+VVT+N
Sbjct: 479 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYN 538

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D  CK  +M++ + L + MI   + P+  +Y  L++G+C  G V+ A  L+  M   
Sbjct: 539 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 598

Query: 255 G 255
           G
Sbjct: 599 G 599



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D ML        V ++N +L  L K K       LF  +   G+FPD YT + 
Sbjct: 446 SEALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 504

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN + K G ++    +   +++              +  KPD +TYNT+IDG CK   +
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQ--------------RNLKPDVVTYNTLIDGFCKGSEM 550

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K  EL+  M  + + PN ++Y  +I G+C     +EA RL+ EM+++G +  ++T N I
Sbjct: 551 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 610

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G   +A   L  M+  G+ PD  TYNTL++GF     ++ A  L   ME+ G
Sbjct: 611 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 669



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    +    +    L   ++  GL P ++T++ +IN  CK G+      V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L  +L+   +PD  T+  L+  C                      PD ++++ +I  L K
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A + F  MK+  + P+ V YT +I GFC     +EA ++  EM++QG   +VVT
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N I++ LCK   + EA  L   M + GV PD +T+ TL++G+   G +N A  LF  M
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L KN+  +   S    +   G+FPD+ T++ LIN +C+ G +   F ++ 
Sbjct: 254 VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM- 312

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                    D ++   L    KP   TYN II+GLCK G   +AK +  +M    + P+ 
Sbjct: 313 ---------DSMSGKGL----KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 359

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C  ++  +A+R+F EM  QGV P++V+F+ ++  L KNG +D+A      
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 419

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G+ PD   Y  L+ GFC  G ++ A ++   M   GC
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 460



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 18/238 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F+ M++ +  P  V ++N ++    K    + V  L+  + S  ++P+  ++ I
Sbjct: 516 NKAVTLFEMMIQRNLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 574

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +C MG VS  F +   ++   F   +              IT NTI+ G C+ G  
Sbjct: 575 LINGYCNMGCVSEAFRLWDEMVEKGFEATI--------------ITCNTIVKGYCRAGNA 620

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E    M  K + P+ +TY ++I GF    + + A  L  +M + G+ P+V+T+NVI
Sbjct: 621 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 680

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++   + G+M EA  ++  MI+ GV PD  TY +L++G       N+ KE F   + M
Sbjct: 681 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ---NNLKEAFRVHDEM 735



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +++ N +LG L K    D    +++ +  +G+  ++YT +I+IN  CK  ++ +      
Sbjct: 219 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIEN------ 272

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                 F  D+       K   PD +TYNT+I+  C+QG +++A EL   M  K +KP V
Sbjct: 273 ---TKSFLSDMEE-----KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 324

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G C    +  AK +  EM+  G+ P+  T+N+++ E C+N  M +A  + D 
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 384

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   GV PD  +++ L+      G ++ A + F  M++ G
Sbjct: 385 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 424



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---CKPDAITYNTII 127
           L + S +I+   +  R+     V+ R++R      V    SL+     C  + + ++ ++
Sbjct: 132 LQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLV 191

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
               +   + +  E F  +K K +  ++    S++ G       + A  ++ E++  GVQ
Sbjct: 192 RTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQ 251

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            NV T N++++ LCKN K++   S L  M + GV PD  TYNTL++ +C  G +  A EL
Sbjct: 252 VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFEL 311

Query: 248 FVSMESMG 255
             SM   G
Sbjct: 312 MDSMSGKG 319


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 72/295 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      +   SLF+ +   G+ P +YT++ILI+ FCK G +      
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L    TP+VVT+T+LI                       CKP+ +TY  +IDG CK
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 133 QGFVDKAKELFLKMK--------DKNVK--------PNVVTYTSVIRGFCYANDWNEAKR 176
            G ++KA +++ +M+        DK  K        PNV+TY +++ G C AN   EA  
Sbjct: 578 AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHE 637

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT------ 230
           L   M+  G +PN + ++ ++D  CK GK+ +A  +   M + G  P+ +TY++      
Sbjct: 638 LLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLF 697

Query: 231 -----------------------------LLDGFCLTGRVNHAKELFVSMESMGC 256
                                        ++DG C  G+ + A +L + ME  GC
Sbjct: 698 KDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGC 752



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD ML      P V ++  ++    K K       LF+ +   G  P++ T++ 
Sbjct: 512 QQARKWFDEMLH-KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTA 570

Query: 77  LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDVVTFTSLI------- 113
           LI+  CK G++     +  R+                  +C  P+V+T+ +L+       
Sbjct: 571 LIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKAN 630

Query: 114 --------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                           C+P+ I Y+ +IDG CK G +  A+E+F KM ++   PN+ TY+
Sbjct: 631 RVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYS 690

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S I      N  +   ++  +M++    PNVV +  ++D LCK GK DEA  L+  M + 
Sbjct: 691 SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEK 750

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  ++DGF  +G++    ELF  M S GC
Sbjct: 751 GCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGC 787



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 15/218 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D ML  H   P    ++ ++    K         +F +++  G  P+LYT+S  
Sbjct: 634 EAHELLDTML-AHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSF 692

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+C  K  R+     VL ++L +  TP+VV +T ++              DGLCK G  D
Sbjct: 693 IDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMV--------------DGLCKIGKTD 738

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L LKM++K   PNVVTYT++I GF  +    +   LF +M  +G  PN +T+ V++
Sbjct: 739 EAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLI 798

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +  C NG +DEA  LLD M Q        ++  +++GF
Sbjct: 799 NHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF 836



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHY------DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           P    +NI +G +  N+        D V   +  +   G+  +    S    C C  G+ 
Sbjct: 382 PGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
              F ++  ++   F PD             D+ TY+ +I  LC    V+KA  LF +MK
Sbjct: 442 DQAFKIICEMMGKGFVPD-------------DS-TYSKVIGFLCDASKVEKAFSLFEEMK 487

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
              + P+V TYT +I  FC A    +A++ F EM+ +G  PNVVT+  ++    K  +M 
Sbjct: 488 RNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMP 547

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            A  L ++M+  G +P+  TY  L+DG C  G++  A +++  M
Sbjct: 548 VADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 34/247 (13%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNS----TGLFPDLYTHSI 76
           D + RM  S   P V ++ I+L GCL K +     L   KR+ S     G +P+    + 
Sbjct: 300 DILHRMRSSSCIPNVVTYRILLSGCLRKGQ-----LGRCKRILSMMITEGCYPNREIFNS 354

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLC---- 131
           LI+ +CK    S+ + +               F  +IK  C+P  + YN  I  +C    
Sbjct: 355 LIHAYCKSRDYSYAYKL---------------FKKMIKCGCQPGYLVYNIFIGSVCSNEE 399

Query: 132 --KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
                 +D  ++ + +M D  V  N V  ++  R  C A  +++A ++  EMM +G  P+
Sbjct: 400 QPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPD 459

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
             T++ ++  LC   K+++A SL + M ++G+ P  +TY  L+D FC  G +  A++ F 
Sbjct: 460 DSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFD 519

Query: 250 SMESMGC 256
            M   GC
Sbjct: 520 EMLHKGC 526



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 19/217 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N ++    +N  ++  L    RL   G  P   T++ LI  F +  ++   ++V   +L
Sbjct: 179 LNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREML 238

Query: 99  RSCFTPDVVTFTSLI-KVCK------------------PDAITYNTIIDGLCKQGFVDKA 139
              F  D  T +     +CK                  PD + YN ++ GLC+    ++A
Sbjct: 239 SYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEA 298

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            ++  +M+  +  PNVVTY  ++ G          KR+   M+ +G  PN   FN ++  
Sbjct: 299 MDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHA 358

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            CK+     A  L   MI+ G +P    YN  +   C
Sbjct: 359 YCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVC 395



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 106/284 (37%), Gaps = 64/284 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++N ++    +    DT   + + + S     D YT S      CK G+    F +
Sbjct: 209 PSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDL 268

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
           +       F PD V +  ++                       C P+ +TY  ++ G  +
Sbjct: 269 IDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLR 326

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + + K +   M  +   PN   + S+I  +C + D++ A +LF +M+  G QP  + 
Sbjct: 327 KGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLV 386

Query: 193 FNVIMDELCKN-----------------------------------------GKMDEASS 211
           +N+ +  +C N                                         GK D+A  
Sbjct: 387 YNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFK 446

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  M+  G  PD  TY+ ++   C   +V  A  LF  M+  G
Sbjct: 447 IICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNG 490



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 23/219 (10%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           +  ML+M      P V ++  M+    K+   +  L LF+ + S G  P+  T+ +LIN 
Sbjct: 741 YKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINH 800

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT------------------ 122
            C  G +   + +L  + ++ +   +++   +I+    + IT                  
Sbjct: 801 CCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDS 860

Query: 123 -YNTIIDGLCKQGFVDKAKELFLKMKD--KNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            Y  +ID   K G ++ A +L  ++     +   N   Y S+I    +A+  ++A  L+ 
Sbjct: 861 LYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYA 920

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            M+ + V P +     ++  L K  K  EA  L D + Q
Sbjct: 921 SMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQ 959


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 136/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R H   P V + ++++G L K         +F  +   G  
Sbjct: 311 GYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 369

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     PD  TF  LIK              
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 429

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KPD +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 489

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G+  ++V F+ I++ LCK G++ +A ++ DL +  G+ PDA  
Sbjct: 490 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 549

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y+ L+DG+CL G++  A  +F +M S G
Sbjct: 550 YSMLMDGYCLVGKMEKALRVFDAMVSAG 577



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD++++S
Sbjct: 140 PELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 199

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +P+VV + ++I          K C       
Sbjct: 200 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 259

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TYN+++  LCK   +DKA+    +M +K V PN  TY ++I G+     W 
Sbjct: 260 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 319

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT +++M  LCK GK+ EA  + D M   G  PD F+YN +L
Sbjct: 320 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 379

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 380 NGYATKGCLVDMTDLF 395



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y ++ 
Sbjct: 424 DKAMIIFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI  FC  G +     ++  I+ +    D+V F+S+I  +CK                  
Sbjct: 483 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA+ Y+ ++DG C  G ++KA  +F  M    ++PNVV Y +++ G+C     +E  
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+ +G++P+ + +++I+D L + G+   A      M + G+  D  TYN +L G 
Sbjct: 603 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 662

Query: 236 CLTGRVNHAKELFVSMESM 254
                 + A  LF  + +M
Sbjct: 663 FKNRCFDEAIFLFKELRAM 681



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 55  TLRPEEAHDLLDELQR-RGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASR 113

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    +++    L++      
Sbjct: 114 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAK 173

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      PNVV
Sbjct: 174 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVV 233

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P++VT+N ++  LCK   MD+A + L  M
Sbjct: 234 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 293

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   V P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 294 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 329



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     N+A  +F  M++    PP + ++N ++  L K +  D   +  +++ +  +
Sbjct: 245 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ LI  +   G+      V   + R    PDVVT + L+              
Sbjct: 299 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM-------------- 344

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
             LCK G + +A+++F  M  K   P+V +Y  ++ G+       +   LF  M+  G+ 
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 404

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  TFNV++      G +D+A  + + M  HGV+PD  TY T++   C  G+++ A E 
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 464

Query: 248 FVSMESMG 255
           F  M   G
Sbjct: 465 FNQMIDQG 472



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A  IFD  + +   P  V    +M G CL      +  L +F  + S G+ P++  +  
Sbjct: 530 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNVVVYCT 587

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N +CK+GR+  G  +   +L+              +  KP  I Y+ IIDGL + G  
Sbjct: 588 LVNGYCKIGRIDEGLSLFREMLQ--------------RGIKPSTILYSIIIDGLFQAGRT 633

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK  F +M +  +  ++ TY  V+RG      ++EA  LF E+    V+ N++T N +
Sbjct: 634 VPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM 693

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D + +  +++EA  L   + +  + P+  TY+ ++      G V  A+++F SM++ GC
Sbjct: 694 IDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 753



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +V  P + TY  ++D   +    + A   F ++    ++ N++    ++ GFC A   +E
Sbjct: 118 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 177

Query: 174 AKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYNT 230
           A  + +    + G  P+V ++++++  LC  GK  +A  LL +M + G    P+   YNT
Sbjct: 178 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 237

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++DGF   G VN A +LF  M   G
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRG 262



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++NI+L  L KN+ +D  + LFK L +  +  ++ T + +I+   +  RV     +  
Sbjct: 652 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 711

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            I RS   P+VVT              Y+ +I  L K+G V++A+++F  M++   +PN 
Sbjct: 712 SISRSRLVPNVVT--------------YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 757

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                V+R     N+   A     ++ ++      +T  +++D     G   E    L
Sbjct: 758 RLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 815


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 34/271 (12%)

Query: 18  EALCIFDYM-LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +AL + D M LR   + PP+   +++L    +   + + +   + L++ G   D    ++
Sbjct: 126 DALTVLDEMPLRGCAATPPMC--HVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNL 183

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +++  C+ G V  G  +L ++      PD+V++ +++K                      
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 116 ----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                     C PD   Y TIIDG+CK G  + A ++  +M    +KPNVV Y +V++G 
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 303

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A  W EA+ L  EM  +    + VTFN+++D  C+NG +D    LL+ M++HG  PD 
Sbjct: 304 CSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDV 363

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            TY T+++GFC  G V+ A  L  +M + GC
Sbjct: 364 ITYTTVINGFCKEGLVDEAVMLLKNMSACGC 394



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P +  +  ++  + K+ H++    +  R+ S GL P++  ++ ++   C   R   
Sbjct: 252 HGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEE 311

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIID 128
              +L  + +     D VTF  L+                       C PD ITY T+I+
Sbjct: 312 AEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVIN 371

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+G VD+A  L   M     KPN ++YT V++G C A  W +A+ L   M+ QG  P
Sbjct: 372 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 431

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N VTFN +++ +CK G  ++A  LL  M+ +G  PD  +Y+T++DG    G+   A EL 
Sbjct: 432 NPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 491

Query: 249 VSMESMG 255
             M + G
Sbjct: 492 NVMINKG 498



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 34/265 (12%)

Query: 26  MLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSL----------FKRLNSTGLFPDLY 72
           +LR  PS    P + S+N +L  L   K +D V  L            ++   G  PDL 
Sbjct: 200 LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLR 259

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
            ++ +I+  CK G       +L R+      P+VV + +++K                  
Sbjct: 260 MYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEM 319

Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
               C  D +T+N ++D  C+ G VD+  EL  +M +    P+V+TYT+VI GFC     
Sbjct: 320 FQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLV 379

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +EA  L   M   G +PN +++ +++  LC+  +  +A  L+  MIQ G  P+  T+NTL
Sbjct: 380 DEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTL 439

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           ++  C  G    A EL   M   GC
Sbjct: 440 INFMCKKGLAEQAIELLKQMLVNGC 464



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++    +N   D V+ L +++   G  PD+ T++ +IN FCK G V    ++L  +
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                 P+ +++T ++K                      C P+ +T+NT+I+ +CK+G  
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLA 449

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A EL  +M      P++++Y++VI G   A    EA  L   M+++G+ PN + ++ +
Sbjct: 450 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 509

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              L + G+ D+   + D +    VR DA  YN ++   C     + A + F  M S GC
Sbjct: 510 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 569



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 31/219 (14%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRI-LRSCF-TPDVV-----------TFTSLIKV 115
           P+ YT+  ++   C  G ++    VL  + LR C  TP +             F S ++ 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C  D+   N ++  +C+QG VD+  EL  K+     +P++V+Y +V++G C 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 168 ANDWNEAKRLFIEMM----------DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           A  W++ + L +EM+          + G  P++  +  I+D +CK+G  + A+ +L  M 
Sbjct: 226 AKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 285

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +G++P+   YNT+L G C   R   A++L   M    C
Sbjct: 286 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDC 324



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 22/251 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + ML  H   P V ++  ++    K    D  + L K +++ G  P+  +++I++   
Sbjct: 350 LLEQMLE-HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 408

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C+  R      ++  +++    P+ VTF +LI                       C PD 
Sbjct: 409 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDL 468

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+Y+T+IDGL K G  ++A EL   M +K + PN + Y+S+          ++  ++F  
Sbjct: 469 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 528

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           + D  V+ +   +N ++  LCK  + D A      M+ +G  P+  TY  L+ G    G 
Sbjct: 529 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGL 588

Query: 241 VNHAKELFVSM 251
           V  A++L   +
Sbjct: 589 VREAQDLLSEL 599



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN +I G C+ G V  A+ L   +    V PN  TY  ++R  C      +A  +  E
Sbjct: 77  VAYNAMIAGYCRAGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCARGLIADALTVLDE 133

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G        +VI++  C+ G    A   L ++   G   D+   N ++   C  G 
Sbjct: 134 MPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGC 193

Query: 241 VNHAKELFVSMESMGC 256
           V+   EL   + S GC
Sbjct: 194 VDEGVELLRKLPSFGC 209



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I  LC  G    A        D      VV Y ++I G+C A    +          
Sbjct: 48  SALIRSLCAAGRTADAARALDTAGDA---AGVVAYNAMIAGYCRA---GQVAAARRLAAA 101

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             V PN  T+  I+  LC  G + +A ++LD M   G        + +L+  C  G    
Sbjct: 102 VPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 244 AKELFVSMESMGC 256
           A      + + GC
Sbjct: 162 AVRALQVLHAKGC 174


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K+  +D    LFK +   GL  +  T+SILI+ FC+ G++      
Sbjct: 364 PSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHF 423

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG+++ +     V  + SLI                     K  KP  ++Y ++I G C 
Sbjct: 424 LGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCN 483

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L+ +M  K + PN  T+T++I     AN   +A RLF EM++Q + PN VT
Sbjct: 484 KGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVT 543

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +NV+++  CK G   +A  LL+ M+Q G+ PD +TY  L+   C TGRV  AK+ 
Sbjct: 544 YNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKF 598



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 22/230 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + +++    K +    V  L K ++   L PD   ++ +I+ + K G V   F +   ++
Sbjct: 649 YAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMI 708

Query: 99  RSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVD 137
               TP++VT+T+LI ++CK                    P+ +TY   +D L ++G ++
Sbjct: 709 DEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSME 768

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +L   M  K +  N V+Y  ++RGFC      EA +L  EM+D  + P+ +T++ I+
Sbjct: 769 KAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTII 827

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            + C+ G +D A    D M+  G++PD   YN L+ G C+ G +  A EL
Sbjct: 828 YQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFEL 877



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD ML  +  P  V+ +N+M+    K  +      L  ++   GL PD YT+  L
Sbjct: 524 DAFRLFDEMLEQNMMPNEVT-YNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPL 582

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------VCKP------ 118
           I+  C  GRV      +  + R  F  + + +++L+              VC+       
Sbjct: 583 ISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGV 642

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D + Y  +IDG  K+        L   M D+ ++P+ V YTS+I G+  A    +A  
Sbjct: 643 DMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFG 702

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++  M+D+G  PN+VT+  +++ELCK G MD+A  L   M+     P+  TY   LD   
Sbjct: 703 IWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLA 762

Query: 237 LTGRVNHAKELFVSM 251
             G +  A +L   M
Sbjct: 763 REGSMEKAVQLHNDM 777



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 126/284 (44%), Gaps = 54/284 (19%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY------------- 72
           ++R     P V +   +L  LAK +  D VL LF  + S G+ PD+Y             
Sbjct: 183 LMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELK 242

Query: 73  --------------------THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
                                +++LI+  CK  RV     +   +++   T   VT+ +L
Sbjct: 243 NFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTL 302

Query: 113 I-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +  +CK                    P     +++++GL ++G V  A +L  ++K    
Sbjct: 303 VLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGA 362

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P++  Y ++I   C    ++EA+ LF EM ++G+  N VT+++++D  C+ GK+D A  
Sbjct: 363 MPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIH 422

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            L  MI  G++   + YN+L++G C  G ++ A   F  M   G
Sbjct: 423 FLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG 466



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    +    DT +    ++   G+   +Y ++ LIN  CK+G +S        +
Sbjct: 403 TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEM 462

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           +     P VV++TSLI                     K   P+  T+ T+I  L +   +
Sbjct: 463 IDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRM 522

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  LF +M ++N+ PN VTY  +I G C   +  +A  L  +M+ +G+ P+  T+  +
Sbjct: 523 TDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPL 582

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +  LC  G++ EA   +D + +   + +   Y+ LL G+C  GR+  A
Sbjct: 583 ISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDA 630



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+  FD M+     P  VS  +++ G   K K ++    L+  +   G+ P+ YT + LI
Sbjct: 455 AVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEA-FRLYHEMTGKGIAPNTYTFTTLI 513

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           +   +  R++  F +   +L     P+ VT+  +I+  CK                    
Sbjct: 514 SALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLV 573

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TY  +I  LC  G V +AK+    +  ++ K N + Y++++ G+C      +A  +
Sbjct: 574 PDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGV 633

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM+ +GV  ++V + V++D   K         LL  M    +RPD   Y +++DG+  
Sbjct: 634 CREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSK 693

Query: 238 TGRVNHAKELFVSMESMGC 256
            G V  A  ++  M   GC
Sbjct: 694 AGSVKKAFGIWDIMIDEGC 712



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 115/244 (47%), Gaps = 22/244 (9%)

Query: 13  TITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           TI   +   +F  +  MH     P    +  M+   +K         ++  +   G  P+
Sbjct: 656 TIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPN 715

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF--------------------T 110
           + T++ LIN  CK G +    ++   +L S  TP+ VT+                     
Sbjct: 716 IVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
            ++K    + ++YN ++ G CK G V++A +L  +M D  + P+ +TY+++I   C   +
Sbjct: 776 DMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGN 835

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            + A   +  M+++G++P+ + +N ++   C  G++ +A  L D MI+ GV+P+  T+ +
Sbjct: 836 LDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKS 895

Query: 231 LLDG 234
           L  G
Sbjct: 896 LSHG 899



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH-GF-VVLG 95
           SF I++  L     +    SL + L   G          L++CF K   +S  GF +++ 
Sbjct: 107 SFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLLIQ 166

Query: 96  RILRSCFTPDVVTFTSLIKVCK--PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++     D V    L++ C+  P   T   +++GL K   VD    LF ++    ++P
Sbjct: 167 SYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRP 226

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y +VIR FC   ++ +AK +   M  +    NVV +NV++  LCKN ++ EA  + 
Sbjct: 227 DIYIYVAVIRSFCELKNFAKAKEMIQRM--ESSDLNVVVYNVLIHGLCKNKRVWEAVEIK 284

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
           + +IQ G+     TY TL+ G C
Sbjct: 285 NGLIQKGLTASEVTYCTLVLGLC 307



 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 169 NDWNEAKRLF-----IEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
             + + KR+F       +M Q  + P V T   +++ L K  ++D    L   ++  G+R
Sbjct: 166 QSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIR 225

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           PD + Y  ++  FC       AKE+   MES
Sbjct: 226 PDIYIYVAVIRSFCELKNFAKAKEMIQRMES 256


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 135/261 (51%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +   M+ +      V+   ++ G L   +  D V+ L +++   G  PD  T++ 
Sbjct: 560 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 618

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------------------IKV 115
           LI+ F K  R+     +L  +L + F P VVT+T+L                      + 
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           C P+AITY++I+DGLCK G V +A   F KM +D+ V P+V+ Y+++I G C A   +EA
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEA 738

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                 M+  G  P+VVTF+++++ LC  G++D    L   M + G + D + YN +++ 
Sbjct: 739 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINA 798

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +CL G  + A  L   M++ G
Sbjct: 799 YCLKGEFSAAYALLEEMKTHG 819



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L+K    D  L L  ++   G   +  T+S +++   K+GR+    VV
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 600

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++  +   PD VT+ +LI                         P  +TY T+  GLC+
Sbjct: 601 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 660

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVV 191
            G  D+A E+   M  +   PN +TY+S++ G C A    EA   F +M  D+ V P+V+
Sbjct: 661 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVI 720

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++D LCK G++DEA   L+ MI+ G  PD  T++ L++G C  GR++   ELF  M
Sbjct: 721 AYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGM 780

Query: 252 ESMGC 256
              GC
Sbjct: 781 AERGC 785



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L+K+      L L + +  +GL PD+ T + +++  CK  R+     V
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             R L     P+VVT+++LI                       C+ + +TY+T++DGL K
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  +  +M+D    P+ VTY ++I GF       EA  L  EM++ G  P+VVT
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 650

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  +   LC++G+ DEA  +LD M   G  P+A TY++++DG C  GRV  A   F  M
Sbjct: 651 YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 12/249 (4%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSI 76
           EA    + M R     P V +F+ ++  L      +    +++R+ +  G+ P+ +T++ 
Sbjct: 363 EAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAF 422

Query: 77  LINCFCKMG---RVSHGF-VVLGRILRSC-----FTPDVVTFTSLIKVCKPDAITYNTII 127
           L+   CK G   R+   F  +L R  RS       +P+V     +++VC+P  +TYNT++
Sbjct: 423 LLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFL--MVQVCRPTLVTYNTLV 480

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
            GL K G V  A  L   M +  + P+V+T+ SV+ G C      +A  +F   +++G +
Sbjct: 481 TGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 540

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PNVVT++ ++D L K  KMDEA  LL  M++ G R +  TY+T++DG    GR+  A  +
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 600

Query: 248 FVSMESMGC 256
              M   GC
Sbjct: 601 LRQMRDAGC 609



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 45/265 (16%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F  + RM  +  PP + +F +++  L K    +    +   +   G  PD+  H++L++ 
Sbjct: 91  FSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHA 150

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C++GRV   +    ++L   FTPD              A+TYNT++DGL K G ++ A 
Sbjct: 151 LCELGRVDEAWFFFQQVLLIGFTPD--------------AVTYNTMVDGLYKAGRLEAAG 196

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +   + +    P V T+T  + G   A +   A   F  M   GV PN VT++ ++D L
Sbjct: 197 MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256

Query: 201 CKNGKMDEA----------------SSLLDLMIQ-HGVR------------PDAFTYNTL 231
           CK GK+D A                SSLL  + Q H +             P+   +N+L
Sbjct: 257 CKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSL 316

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           ++G C   RV+ A ELF  M+  GC
Sbjct: 317 MNGLCQARRVDEAFELFDVMKESGC 341



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 21/195 (10%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------- 113
           + T+++LIN  CK GRV   F    + ++  F P VVT++++I                 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 114 ----KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
               + C P+A+TYNT+++ L  QG   +A  L  +M      P ++T+  +I+G C   
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           +   A R+  EM+D+G  P+V    V++  LC+ G++DEA      ++  G  PDA TYN
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 230 TLLDGFCLTGRVNHA 244
           T++DG    GR+  A
Sbjct: 181 TMVDGLYKAGRLEAA 195



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 119/273 (43%), Gaps = 49/273 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHS 75
           +EA+ I DYM     +P  ++  +I+ G L K       L  F+++    +  P +  +S
Sbjct: 665 DEAVEILDYMAARGCAPNAITYSSIVDG-LCKAGRVTEALGYFEKMARDEVVAPHVIAYS 723

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  CK GR+   +  L R++R+   PDVVTF+ LI              +GLC  G 
Sbjct: 724 ALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILI--------------NGLCDAGR 769

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D   ELF  M ++  K ++  Y ++I  +C   +++ A  L  EM   G+  N VT  +
Sbjct: 770 IDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGI 829

Query: 196 IMDELCKNGKMDEASS---------------------------------LLDLMIQHGVR 222
           ++  LC N ++DEA S                                 LL  M+  G  
Sbjct: 830 VIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGS 889

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           PDA  Y T++DG    G    A +L   M S G
Sbjct: 890 PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRG 922



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V +F I +  L+K  +       F  +  TG+ P+  T+  LI+  CK G++    
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLD--- 263

Query: 92  VVLGRILRSCFTPDVVTFTSLIK------------------VCKPDAITYNTIIDGLCKQ 133
           + LG +        +  F+SL+                    C P+ + +N++++GLC+ 
Sbjct: 264 IALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQA 323

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM--DQGVQPNVV 191
             VD+A ELF  MK+     +V+TY  +++G C      EA R  +E+M   +G  PNVV
Sbjct: 324 RRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYR-HVELMRRTEGCSPNVV 382

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           TF+ ++  LC  G++++A  + + M+   G+ P+ FTY  LL+G C  G     ++ F  
Sbjct: 383 TFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQ 442

Query: 251 M 251
           M
Sbjct: 443 M 443



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 18/237 (7%)

Query: 17  NEALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EA+ +   ML    HPS   V ++  +   L ++  +D  + +   + + G  P+  T+
Sbjct: 630 REAVGLLREMLEAGFHPS---VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITY 686

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +++  CK GRV+       ++ R              +V  P  I Y+ +IDGLCK G
Sbjct: 687 SSIVDGLCKAGRVTEALGYFEKMARD-------------EVVAPHVIAYSALIDGLCKAG 733

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E   +M      P+VVT++ +I G C A   +    LF  M ++G + ++  +N
Sbjct: 734 RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +++  C  G+   A +LL+ M  HG+  +  T+  ++   C   R++ A   F S+
Sbjct: 794 AMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L ++   D    L + +   G  P+  T++ L+N     GR    F +
Sbjct: 34  PTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSL 93

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+  +               C P+ IT+  II GLCK+G ++ A  +  +M D+   P
Sbjct: 94  LERMAANG--------------CPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVP 139

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V  +T ++   C     +EA   F +++  G  P+ VT+N ++D L K G+++ A  +L
Sbjct: 140 DVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVL 199

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            L+ +    P  FT+   +DG    G +  A E F SM   G
Sbjct: 200 QLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTG 241



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 22/254 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA    + M+R     P V +F+I++  L      DT L LF  +   G   D+Y ++ 
Sbjct: 736 DEAYEFLERMIRAG-RIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNA 794

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------C 116
           +IN +C  G  S  + +L  +       + VT   +IK                     C
Sbjct: 795 MINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC 854

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D I+YNT+I  L      ++A EL   M      P+   Y +V+ G   A     A +
Sbjct: 855 R-DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAK 913

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  +G  P++ T+ +++  L K  ++  A    + M++  ++PDA  Y++L+D FC
Sbjct: 914 LLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFC 973

Query: 237 LTGRVNHAKELFVS 250
              +V+ A +L  S
Sbjct: 974 KADKVDDAWKLLRS 987



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYN +I+GLCK G V  A   F K      +P VVTY++VI G C  N+ ++  +L  E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  PN VT+N +++ L   G+  EA SLL+ M  +G  P+  T+  ++ G C  G 
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 241 VNHAKELFVSMESMG 255
           +  A  +   M   G
Sbjct: 122 IEAAFRVVDEMVDRG 136



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 61/268 (22%)

Query: 36   VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            + ++N M+        +    +L + + + G+  +  TH I+I   C   R+        
Sbjct: 789  IYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFH 848

Query: 96   RILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQG 134
             I   C   D +++ +LI                         PDA  Y T++DGL K G
Sbjct: 849  SIPEDC--RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAG 906

Query: 135  F-----------------------------VDKAKEL------FLKMKDKNVKPNVVTYT 159
                                          + KAK+L      F +M  KN+KP+ + Y+
Sbjct: 907  SPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS 966

Query: 160  SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            S+I  FC A+  ++A +L   +   G++P +  ++ ++D LCKN   D+A  ++  M   
Sbjct: 967  SLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSK 1023

Query: 220  GVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
               P    + +L   +   GRV+ A +L
Sbjct: 1024 NCEPGIHIWTSLATAYVAEGRVDEAVKL 1051



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           +VTY  +I G C A    +A   F + +  G +P VVT++ ++D LC++ ++D+   LL+
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G  P+A TYNTL++     GR   A  L   M + GC
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGC 102



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 19/185 (10%)

Query: 11   ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
            + +    +AL +   M+    SP   +   +M G L K    +    L + + S G  PD
Sbjct: 868  VASRRSEQALELLRAMVADGGSPDACNYMTVMDG-LFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 71   LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAI-------- 121
            L T++I+I+   K  ++         +LR    PD + ++SLI   CK D +        
Sbjct: 927  LRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR 986

Query: 122  ---------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                      Y+T++D LCK    DKA E+  +MK KN +P +  +TS+   +      +
Sbjct: 987  SSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVD 1046

Query: 173  EAKRL 177
            EA +L
Sbjct: 1047 EAVKL 1051


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N ML  L K      V S++K +    +  ++ T  ++IN  CK+G+      V+  +
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM 255

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
               F+P V              ITYNTIIDG CK G + KA  L  +M  K + PN +T
Sbjct: 256 KAWGFSPSV--------------ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +  +I GFC   +   AK++F EM  QG+QPNVVT+N +++ LC NGK+DEA  L D M 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G++P+  TYN L++GFC    +  A+E+   +   G
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F++++  L K   +     + + + + G  P + T++ +I+ +CK G++     +L 
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            ++     P+ +TF  LI                     +  +P+ +TYN++I+GLC  G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A  L  KM    +KPNVVTY ++I GFC      EA+ +  ++  +G+ PNV+TFN
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D   K G+MD+A  L  +M+  GV P+  TYN L+ GFC  G V  A++L   ME  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 255 G 255
           G
Sbjct: 469 G 469



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 24/249 (9%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R+HP+     +FNI++    ++++      +F+ +   GL P++ T++ LIN  C  G++
Sbjct: 294 RIHPNEI---TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTI 126
                +  ++      P+VVT+ +LI   CK                    P+ IT+NT+
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ID   K G +D A  L   M D  V PNV TY  +I GFC   +  EA++L  EM   G+
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           + ++VT+N+++D LCK G+  +A  LLD M + G+ P   TYN L+DG+   G    A  
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALN 530

Query: 247 LFVSMESMG 255
           +   ME  G
Sbjct: 531 VRTLMEKKG 539



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 24/256 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M R     P V ++N ++  L  N   D  L L  +++  GL P++ T++ LIN F
Sbjct: 321 VFEEMQR-QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------VCKPD 119
           CK   +     +L  I +    P+V+TF +LI                       VC P+
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PN 438

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TYN +I G C++G V +A++L  +M+   +K ++VTY  ++   C   +  +A RL  
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM + G+ P+ +T+N ++D   + G    A ++  LM + G R +  TYN L+ GFC  G
Sbjct: 499 EMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKG 558

Query: 240 RVNHAKELFVSMESMG 255
           ++  A  L   M   G
Sbjct: 559 KLEEANRLLNEMLEKG 574



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D M  M   P  V ++N ++    K K       +   +   GL P++ T + 
Sbjct: 351 DEALGLQDKMSGMGLKPN-VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ + K GR+   F++   +L +   P+V T+  LI                       
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D +TYN ++D LCK+G   KA  L  +M +  + P+ +TY ++I G+    +   A 
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            +   M  +G + N+VT+NV++   C  GK++EA+ LL+ M++ G+ P+  TY+ L D
Sbjct: 530 NVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+  LC F +  +   +   V  F  +L  LA  K+Y+ + +L             Y++S
Sbjct: 87  PDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAH----YSNS 142

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-------DAITYNTIID 128
            + +    +G       ++  +L   +  +     +L    +         A++ N ++ 
Sbjct: 143 TIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLV 202

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K+G +   + ++ +M  + +  NVVT+  VI G C    + +A  +  +M   G  P
Sbjct: 203 SLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSP 262

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V+T+N I+D  CK GKM +A +LL  M+   + P+  T+N L+DGFC    V  AK++F
Sbjct: 263 SVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVF 322

Query: 249 VSMESMG 255
             M+  G
Sbjct: 323 EEMQRQG 329



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    K    D    L   +  TG+ P++ T++ LI  FC+ G V     +
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              +  +    D+VT+  L+  +CK                    P  +TYN +IDG  +
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFR 521

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G    A  +   M+ K  + N+VTY  +I+GFC      EA RL  EM+++G+ PN  T
Sbjct: 522 EGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTT 581

Query: 193 FNVIMDELCKNG 204
           ++++ DE+ + G
Sbjct: 582 YDILRDEMMEKG 593


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 140/298 (46%), Gaps = 58/298 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+  ++     P V SFN+++  + K       L L +R++  G  PD  TH+I
Sbjct: 215 QDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNI 274

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L+N  C+   VS G  VL R+ R     P+VVT+TS+I   CK                 
Sbjct: 275 LVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAV 334

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K G +  A  ++ +M  +   P+VVT++S+I G+C     ++A
Sbjct: 335 GTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDA 394

Query: 175 KRLFIEMMDQGVQPNVVTF------------------------------------NVIMD 198
            +++ EM    +QPN  TF                                    N ++D
Sbjct: 395 MKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVID 454

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCK GK+DEA+ +L  M + G RPD +TY  L+ G C+ GR+  A   F  M   GC
Sbjct: 455 VLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGC 512



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 106/221 (47%), Gaps = 23/221 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +++ M+ +  SP  V ++N+++    K  +  + +++++++      PD+ T S 
Sbjct: 322 EDAMAVYNDMVAVGTSPN-VVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSS 380

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+ +C+ G++     +   + +    P+  TF  +I   CK                  
Sbjct: 381 LIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRT 440

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P A  YN +ID LCK G VD+A  + ++M++K  +P+  TYT +I G C      EA
Sbjct: 441 DIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEA 500

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
              F +M++ G  P+ +  N  +  L K+G   E   ++ +
Sbjct: 501 VTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMRI 541



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P A +Y  +I  +C+ G    A +LF +M D++       + S + G C A    +A   
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAA 184

Query: 178 FIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGF 235
            +    Q G       +N +MD    +G++ +A +L +  IQ GV  PD +++N ++ G 
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A EL   M+  GC
Sbjct: 245 CKVGDVQKALELVERMDEFGC 265


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 136/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R H   P V + ++++G L K         +F  +   G  
Sbjct: 298 GYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     PD  TF  LIK              
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KPD +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 476

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G+  ++V F+ I++ LCK G++ +A ++ DL +  G+ PDA  
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 536

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y+ L+DG+CL G++  A  +F +M S G
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAG 564



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD++++S
Sbjct: 127 PELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 186

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +P+VV + ++I          K C       
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 246

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TYN+++  LCK   +DKA+    +M +K V PN  TY ++I G+     W 
Sbjct: 247 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 306

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT +++M  LCK GK+ EA  + D M   G  PD F+YN +L
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 367 NGYATKGCLVDMTDLF 382



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y ++ 
Sbjct: 411 DKAMIIFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +     ++  I+ +    D+V F+S              II+ LCK G V
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS--------------IINNLCKLGRV 515

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ +F    +  + P+ V Y+ ++ G+C      +A R+F  M+  G++PNVV +  +
Sbjct: 516 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTL 575

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G++DE  SL   M+Q G++P    Y+ ++DG    GR   AK  F  M   G
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 634



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 42  TLRPEEAHDLLDELQR-RGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASR 100

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    +++    L++      
Sbjct: 101 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAK 160

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      PNVV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVV 220

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P++VT+N ++  LCK   MD+A + L  M
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 280

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   V P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 281 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     N+A  +F  M++    PP + ++N ++  L K +  D   +  +++ +  +
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ LI  +   G+      V   + R    PDVVT + L+              
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM-------------- 331

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
             LCK G + +A+++F  M  K   P+V +Y  ++ G+       +   LF  M+  G+ 
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 391

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  TFNV++      G +D+A  + + M  HGV+PD  TY T++   C  G+++ A E 
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 248 FVSMESMG 255
           F  M   G
Sbjct: 452 FNQMIDQG 459



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A  IFD  + +   P  V    +M G CL      +  L +F  + S G+ P++  +  
Sbjct: 517 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNVVVYCT 574

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N +CK+GR+  G  +   +L+              +  KP  I Y+ IIDGL + G  
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQ--------------RGIKPSTILYSIIIDGLFQAGRT 620

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK  F +M +  +  ++ TY  V+RG      ++EA  LF E+    V+ N++T N +
Sbjct: 621 VPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM 680

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D + +  +++EA  L   + +  + P   TY+ ++      G V  A+++F SM++ GC
Sbjct: 681 IDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 740



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 22/243 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+     P  V    ++ G   K    D  LSLF+ +   G+ P    +SI+
Sbjct: 552 KALRVFDAMVSAGIEPNVVVYCTLVNG-YCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610

Query: 78  INCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV-C 116
           I+   + GR                     ++  V+ G     CF   +  F  L  +  
Sbjct: 611 IDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K + IT NT+IDG+ +   V++AK+LF  +    + P+VVTY+ +I          EA+ 
Sbjct: 671 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 730

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M + G +PN    N ++ EL K  ++  A + L  + +     +  T   L+D F 
Sbjct: 731 MFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS 790

Query: 237 LTG 239
             G
Sbjct: 791 SKG 793



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +V  P + TY  ++D   +    + A   F ++    ++ N++    ++ GFC A   +E
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 164

Query: 174 AKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYNT 230
           A  + +    + G  P+V ++++++  LC  GK  +A  LL +M + G    P+   YNT
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 224

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++DGF   G VN A +LF  M   G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRG 249



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++NI+L  L KN+ +D  + LFK L +  +  ++ T + +I+   +  RV     +  
Sbjct: 639 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA 698

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            I RS   P VVT              Y+ +I  L K+G V++A+++F  M++   +PN 
Sbjct: 699 SISRSRLVPSVVT--------------YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 744

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
                V+R     N+   A     ++ ++      +T  +++D     G   E
Sbjct: 745 RLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCRE 797


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 25/240 (10%)

Query: 40  NIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           N  L CL   K  D  LS L  R++  G  PD ++++ +I   C   R      +L R+ 
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 99  RS--CFTPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGF 135
           +   C +PDVV++T +I          K C            P+ +TYN+I+  LCK   
Sbjct: 264 KGDGC-SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARA 322

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +DKA+ +  +M D +++P+ VTYT++I G+     W EA ++F EM  +G+ P++VTFN 
Sbjct: 323 MDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNS 382

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +MD LCK+ +  EA+ +   +   G +PD  +Y+ LL G+   GR      LF SM   G
Sbjct: 383 LMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNG 442



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 51/274 (18%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M R     P + +FN ++  L K+K       +F  + + G  PD+ ++SIL
Sbjct: 360 EAAKMFKEMTR-EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSIL 418

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +   GR    FV +  +  S     +V           D+  +N +I+   K+G +D
Sbjct: 419 LHGYATEGR----FVDMNNLFHSMTDNGIVA----------DSHCFNILINAHAKRGMMD 464

Query: 138 KAKELFLKMKDKNVKPNVVTYTSV-----------------------------------I 162
           +A  +F +M+ + V PNVVTY +V                                   I
Sbjct: 465 EALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLI 524

Query: 163 RGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +GFC   D  +AK L  EMMDQG+ +PN+  F+ I+  LC  G++  A  + +L+I  G 
Sbjct: 525 QGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD 584

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           RPD FT+N+L+DG+CL G+++ A  +  +M S G
Sbjct: 585 RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAG 618



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 40/280 (14%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTV---------LSLFKRLN 63
           T +  +A  +FD +LR   +P    + N  L  LA+ +  D+V         ++LF R+ 
Sbjct: 96  TFSTEDAHHLFDELLR-QDTPVHGRALNGFLAALARAR--DSVACSDAPALAVALFNRIC 152

Query: 64  STGLFP-----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--- 115
                P      ++T+ IL++C C+  R   G     R+LR+    D +   + +K    
Sbjct: 153 REEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCY 212

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNV 155
                              C PDA +YNT+I  LC      +A ++ L+M K     P+V
Sbjct: 213 AKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDV 272

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V+YT VI G     + ++A  LF EM+ +GV PNVVT+N I+  LCK   MD+A  +L  
Sbjct: 273 VSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQ 332

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M  + ++PD  TY  ++ G+   GR   A ++F  M   G
Sbjct: 333 MFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREG 372



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 59/292 (20%)

Query: 23  FDYMLRMHPS---PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
            D +LRM       P V S+ +++  L          +LF  +   G+ P++ T++ +++
Sbjct: 256 LDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVH 315

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK--------P 118
             CK   +    +VL ++  +   PD VT+T++I             K+ K        P
Sbjct: 316 ALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIP 375

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW------- 171
           D +T+N+++D LCK     +A E+F  +  K  KP++++Y+ ++ G+     +       
Sbjct: 376 DIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLF 435

Query: 172 ----------------------------NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
                                       +EA  +F EM  QGV PNVVT+  ++  LC+ 
Sbjct: 436 HSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRM 495

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G++ +A   L  MI  G++P+   Y++L+ GFC  G +  AKEL   M   G
Sbjct: 496 GRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 22/239 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++   AK    D  L +F  +   G+ P++ T++ +I   C+MGR++     L +++
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI 509

Query: 99  RSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFV 136
                P+ V + SLI+                      + +P+   +++II  LC +G V
Sbjct: 510 SIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRV 569

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+++F  +     +P++ T+ S+I G+C     ++A  +   M+  G +P+VVT++ +
Sbjct: 570 MNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTL 629

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   K+G++D+   L   M+   V+P   TY+ +LDG    GR + AK++F  M   G
Sbjct: 630 INGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++ F+ ++  L           +F  +   G  PD++T + LI+ +C +G++   F V
Sbjct: 551 PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGV 610

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   PDVVT+++LI                     K  KP  +TY+ ++DGL +
Sbjct: 611 LDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFR 670

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    AK++F +M +     ++ TYT +++G C  N  +EA  LF ++    ++  +  
Sbjct: 671 AGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAI 730

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N ++  L K  + +EA  L   +   G+ P+A TY  ++      G V  A  +F SME
Sbjct: 731 LNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSME 790

Query: 253 SMGC 256
             GC
Sbjct: 791 KTGC 794



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++         D    +   + S G  PD+ T+S LIN + K GR+  G ++
Sbjct: 586 PDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLIL 645

Query: 94  LGRILRSCFTPDVVTFT----SLIKVCKPDAI-----------------TYNTIIDGLCK 132
              +L     P  VT++     L +  +  A                  TY  I+ GLC+
Sbjct: 646 FREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCR 705

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A  LF K+   N+K  +    ++I          EA  LF  +   G+ PN  T
Sbjct: 706 NNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNAST 765

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + V++  L K G ++EA  +   M + G  P +   N ++      G +  A
Sbjct: 766 YGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKA 817


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 22/257 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D + R   S P + +++ +L    K    +    L K + S GL PD   ++ ++   
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDA 120
           CK  R+     +L  ++R+   P ++TF +LI  C                     K D 
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADV 187

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYNT++DGLCK G + +A++L  +MK     P+VV Y+S + G C +     A ++  +
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQ 247

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTG 239
           M D    PNVVT+N I+D LCK+GK+D A  +++ M    G   +   Y+T++DG C  G
Sbjct: 248 MRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLG 307

Query: 240 RVNHAKELFVSMESMGC 256
           R   A+ +  +M   GC
Sbjct: 308 RTQEARSVMEAMARAGC 324



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 27/248 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++  L K         L +R+ ++G  PD+  +S  +   CK G+V +   VL 
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE 246

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP---------------------DAITYNTIIDGLCKQ 133
           ++  S   P+VVT+ +++  +CK                      + + Y+T++DGLCK 
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G   +A+ +   M     +P+VVTY+S++ G C A    EA     EM  +G +PN VT+
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVR-----PDAFTYNTLLDGFCLTGRVNHAKELF 248
             ++  LC  G++ EA  +++ M   G       P   TYN L+ G C  GR++ A + F
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 249 VSMESMGC 256
             M S GC
Sbjct: 427 QRMRSQGC 434



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N +L  L K + +     L + + S G    PDL T+S L++ +CK G+V    
Sbjct: 43  PNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESR 102

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
            +L  ++     PD + +T ++                       C P  IT+NT+I G 
Sbjct: 103 ELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGC 162

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++  ++ A  L   M    VK +VVTY +++ G C A    EA++L   M   G  P+V
Sbjct: 163 CREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V ++  +  LCK+GK+  A  +L+ M      P+  TYNT+LDG C +G+++ A E+   
Sbjct: 223 VAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQ 282

Query: 251 MESM-GC 256
           M S  GC
Sbjct: 283 MASSDGC 289



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 20/217 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V ++N +L  L K+   DT L + +++ S+ G   ++  +S +++  CK+GR      
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V+  + R+               C+PD +TY+++++GLCK G +++A E   +M  +  K
Sbjct: 315 VMEAMARA--------------GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK 360

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMD 207
           PN VTY S++ G C      EA+R+  EM   G       P+V T+N ++  LCK G++D
Sbjct: 361 PNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRID 420

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +A      M   G  PD  +Y+T+++G   +GR   A
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 23/218 (10%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--- 117
           ++ TG  P+  T + L+N F K GR      +L  +      P+VV++  L++ +CK   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 118 -------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                              PD +TY+T++ G CK G V++++EL  ++  + ++P+ + Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T V+   C +    EA  L  EM+  G  P ++TFN ++   C+   ++ A SLL  M  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GV+ D  TYNTL+DG C  GR+  A++L   M++ GC
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           PP VS++N ++G L K    D  L  F+R+ S G  PD  ++S ++    + GR 
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M  M  SP  V ++N ++    K    + V  L   +  +G   D+ T++ L
Sbjct: 218 EARALFVRMKAMGCSPD-VVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNAL 276

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INCF K GR+   +   G + R     +VVTF+              T +D  CK+G V 
Sbjct: 277 INCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS--------------TFVDAFCKEGLVQ 322

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M+ + + PN  TYTS++ G C A   ++A  L  EM+ QG+ PNVVT+ V++
Sbjct: 323 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK GK+ EA ++L LM + GV+ +   Y TL+ G  +      A +L   M++ G
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKG 440



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L  LA+N+    V  LF  L      P+++T +I+I+  CK G +     
Sbjct: 166 PPNTRTCNHILLRLARNRQGGLVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEARA 221

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  R+     +PDVVT+ SLI                       C  D +TYN +I+   
Sbjct: 222 LFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFS 281

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G ++KA   F +MK + V  NVVT+++ +  FC      EA +LF +M  +G+ PN  
Sbjct: 282 KFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEF 341

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  LLD M+  G+ P+  TY  ++DG C  G+V  A  +   M
Sbjct: 342 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLM 401

Query: 252 ESMG 255
           E  G
Sbjct: 402 ERGG 405



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F  M R+    P   ++  ++    K    D  + L   +   GL P++ T+++
Sbjct: 322 QEAMKLFAQM-RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTV 380

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +++  CK G+V+    VL  + R     + + +T+LI                     K 
Sbjct: 381 MVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKG 440

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D   Y T+I GLCK   VD+AK L  KM    ++PN V YT+++     A   +EA 
Sbjct: 441 MELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAV 500

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +++D G QPNVVT+  ++D LCK G + EA S  + M + G+ P+   Y  L+DGF
Sbjct: 501 ALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGF 560

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +N A  L   M   G
Sbjct: 561 CKIGSLNKAMHLMNEMIDKG 580



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           VS +  ++  L K++  D   SL  ++   GL P+   ++ +++   K G+ S    +L 
Sbjct: 445 VSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLH 504

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +IL S F P+VVT+ +LI              DGLCK G + +A   F KM++  + PNV
Sbjct: 505 KILDSGFQPNVVTYCALI--------------DGLCKAGSISEAISHFNKMRELGLDPNV 550

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             YT++I GFC     N+A  L  EM+D+G+  + V +  ++D   K   + +A +L   
Sbjct: 551 QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTK 610

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI+ G++ D + Y   + GFC    +  A+ +   M   G
Sbjct: 611 MIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 650



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K       +S F ++   GL P++  ++ LI+ FCK+G ++    +
Sbjct: 513 PNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHL 572

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  ++    + D V +TSL              IDG  KQ  +  A  L  KM +  ++ 
Sbjct: 573 MNEMIDKGMSLDKVVYTSL--------------IDGYMKQANLQDAFALKTKMIESGLQL 618

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YT  I GFC  N   EA+ +  EM+  G+ P+   +N ++ +  K G M+EASSL 
Sbjct: 619 DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQ 678

Query: 214 DLM 216
           + M
Sbjct: 679 NEM 681



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY-----------NTIIDGLCKQGFV 136
           +H   +L R+L +   P +    SL+ +    A+             +T++  L   G +
Sbjct: 93  AHSRRLLSRLLGAGHRPHLAA--SLVDLLHRAALALGPRRSALPSVVDTLLSLLADHGLL 150

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A     +++   V PN  T   ++            +RLF    D    PNV TFN++
Sbjct: 151 DDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLF----DLLPVPNVFTFNIV 206

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK G++ EA +L   M   G  PD  TYN+L+DG+   G +   ++L   M   GC
Sbjct: 207 IDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGC 266


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 134/253 (52%), Gaps = 26/253 (10%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAK-----NKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           ++   H   P V S+N +L  L +     ++ YD    +F+ +   G+ P++YT++++I 
Sbjct: 156 HLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIR 215

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------------------P 118
                G +  G   + ++ +   +P+VVT+ +LI   CK                     
Sbjct: 216 GVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAA 275

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + I+YN++I+GLC +G + +  EL  +M+ K + P+ VTY +++ GFC   + ++   L 
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM+ +G+ PNVVT+  +++ +CK G +  A  + D M   G+RP+  TY TL+DGFC  
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQK 395

Query: 239 GRVNHAKELFVSM 251
           G +N A ++   M
Sbjct: 396 GLMNEAYKVLSEM 408



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++ C+ K  +    + +F ++   GL P+  T++ LI+ FC+ G ++  + V
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ S F+P VVT+ +L+                     +   PD ++Y+T+I G C+
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  + KA ++  +M +K V P+ VTY+S+I+G C      EA  LF EMM +G+ P+ VT
Sbjct: 465 ERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVT 524

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  +++  C +G++ +A  L D M+Q G  PD  TY+ L++G     R   AK L + +
Sbjct: 525 YTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 129/239 (53%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N ++  L        V  L + +   GL PD  T++ L+N FCK G +  G V+L  +
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
           +    +P+VVT+T+LI  +CK                    P+  TY T+IDG C++G +
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A ++  +M      P+VVTY +++ G+C+     EA  +   M+++G+ P+VV+++ +
Sbjct: 399 NEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTV 458

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+  ++ +A  + + M++ GV PD  TY++L+ G CL  ++  A +LF  M   G
Sbjct: 459 IAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M+R   SP  V ++N+++  +      +  L   +++   G+ P++ T++ 
Sbjct: 189 DDAERVFRDMVRNGVSPN-VYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNT 247

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK  +V     +L  +       +++++ S+I                     K 
Sbjct: 248 LIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKG 307

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TYNT+++G CK+G + +   L  +M  K + PNVVTYT++I   C A + + A 
Sbjct: 308 LVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAV 367

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M  +G++PN  T+  ++D  C+ G M+EA  +L  MI  G  P   TYN L+ G+
Sbjct: 368 EIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGY 427

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GRV  A  +   M   G
Sbjct: 428 CFLGRVQEAVGILRGMVERG 447



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 132/271 (48%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ IFD M R+    P   ++  ++    +    +    +   +  +G  P + T++ 
Sbjct: 364 SRAVEIFDQM-RVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNA 422

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ +C +GRV     +L  ++     PDVV+++++I                     K 
Sbjct: 423 LVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG 482

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TY+++I GLC Q  + +A +LF +M  + + P+ VTYTS+I  +C   + ++A 
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKAL 542

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
           RL  EM+ +G  P+ VT++V+++ L K  +   A  LL  +      PD  TYNTL++  
Sbjct: 543 RLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENC 602

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G +N A  +F +M
Sbjct: 603 SNNEFKSVEGLVKGFCMKGLMNEADRVFKTM 633



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 36/236 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L   +       LF+ +   GL PD  T++ LIN +C  G +S    +
Sbjct: 485 PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRL 544

Query: 94  LGRILRSCFTPDVVTFTSLI---------KVCK------------PDAITYNTIID---- 128
              +++  F PD VT++ LI         KV K            PD +TYNT+I+    
Sbjct: 545 HDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSN 604

Query: 129 -----------GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C +G +++A  +F  M  +N KPN   Y  +I G     + ++A  L
Sbjct: 605 NEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNL 664

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           ++E+       + V    ++  L + G  DE S LL  +++     DA     L++
Sbjct: 665 YMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVE 720



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI-----RGFCYANDWNEA 174
           +  ++ ++  L + GFV KA  L          P V++Y +V+     R      D+++A
Sbjct: 132 SAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDA 191

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +R+F +M+  GV PNV T+NVI+  +   G +++    +  M + G+ P+  TYNTL+D 
Sbjct: 192 ERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDA 251

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C   +V  A  L  +M   G
Sbjct: 252 SCKKKKVKEAMALLRAMAVGG 272


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IF+  +R     P   SFN ++  L K+++ D    L K +    ++PD++T+S+L
Sbjct: 241 DAKLIFNE-IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVL 299

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+  CK GR+     +   + +    P+ +TFT+LI                        
Sbjct: 300 IHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGV 359

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD + YNT+++GLCK G V+KA++L  +M+   +KP+ +TYT++I G+C   D   A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   M ++GV  + V F  ++   C++G++ +A   L  M++ G++PD  TY  ++DG+C
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYC 479

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V    +L   M+  G
Sbjct: 480 KKGNVKMGFKLLKEMQING 498



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 21/223 (9%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
           T+ + +  +   G  P +  ++ILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 114 K-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
             +CK                    PD  TY+ +I GLCK+G +D A++LF +M+ + ++
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN +T+T++I G C +   + A   + +M+  GV+P++V +N +++ LCK G +++A  L
Sbjct: 326 PNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D M   G++PD  TY TL+DG+C  G +  A E+   M   G
Sbjct: 386 VDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 22/241 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M +    P  ++ F  ++    +++  D+ ++ + ++ + G+ PDL  ++ L+N  
Sbjct: 315 LFDEMQQRGLRPNGIT-FTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DA 120
           CK+G V+    ++  +      PD +T+T+LI   CK                     D 
Sbjct: 374 CKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + +  +I G C+ G V  A+    +M +  +KP+  TYT VI G+C   +     +L  E
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G +P V+T+NV+M+ LCK G+M  A+ LL+ M+  GV PD  TYN LL+G C  G+
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553

Query: 241 V 241
            
Sbjct: 554 A 554



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  C+  R+      
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNT 350

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++L     PD+V + +L+  +CK                    PD ITY T+IDG CK
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCK 410

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E+   M ++ V  + V +T++I GFC      +A+R   EM++ G++P+  T
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDAT 470

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CK G +     LL  M  +G +P   TYN L++G C  G++ +A  L  +M 
Sbjct: 471 YTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAML 530

Query: 253 SMG 255
           ++G
Sbjct: 531 NLG 533


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 130/239 (54%), Gaps = 18/239 (7%)

Query: 17  NEALCIFDYMLRM----HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +E L +FD M +     H   P V S++ ++  L K +  D     FKR+ + G  P++ 
Sbjct: 85  DEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 144

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T+S LI+  CK+ RV   + +L ++       D+V          P A+ YN +++G  +
Sbjct: 145 TYSSLIDGLCKVDRVDEAYSLLMQLK----GEDMV----------PRAMYYNAVVNGFKR 190

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG   +  EL L MK+K    N++ + +++      ++  +A + F  ++  G +PNVVT
Sbjct: 191 QGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVT 250

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +NV +  LCK GK+DEA  +L  M++  V PD  TY++++DGFC  GR++ A ++F  M
Sbjct: 251 YNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRM 309



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 14/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ML  L KN   +     F+RL  +G  P++ T+++ ++  CK G+V   + +L  ++
Sbjct: 216 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMV 275

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            S  TPDV              ITY++IIDG CK G +DKA ++F +M      P+ VT+
Sbjct: 276 ESKVTPDV--------------ITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTF 321

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++ GF       EA R+  +M++ G  P + T+NV+MD +C    ++ A  +   M +
Sbjct: 322 MTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKR 381

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              +PDA TY  L+   C   RV+ AKE    ME+
Sbjct: 382 KKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEA 416



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++    K    D    L   +   G+  D+  HS LI   C+ GR+           
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALE------ 55

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-----NVKP 153
                     F S+ + C P+ ITYNT+++GLCK   +D+  ELF  M+ +       +P
Sbjct: 56  ---------QFKSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEP 106

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V++Y++VI   C A   ++A   F  M   G  PNVVT++ ++D LCK  ++DEA SLL
Sbjct: 107 DVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLL 166

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +    + P A  YN +++GF   G+ +   EL + M+  G
Sbjct: 167 MQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKG 208



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 122/280 (43%), Gaps = 40/280 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E  C F   L      P V ++N+ +  L K    D    +   +  + + PD+ T+S 
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSS 288

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------ 117
           +I+ FCK GR+     V  R++     P  VTF +L+             +V +      
Sbjct: 289 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 348

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TYN ++D +C    V+ A E++ KMK K  +P+  TY  +I+  C A   +EAK
Sbjct: 349 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAK 408

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD-------------------LM 216
                M    V PN    + +++ LCK G++DEA S+LD                    M
Sbjct: 409 EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQM 468

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  GVRPD  TY  +L   C   RV+ A   F  M S GC
Sbjct: 469 VLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGC 508



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 6/139 (4%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y T+I+G CK G VD+A EL  +MK++ VK +V+ ++++I+G C     +EA   F  M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-----IQHGVRPDAFTYNTLLDGFCL 237
           ++   PNV+T+N +++ LCK  ++DE   L D M       HG  PD  +Y+T++D  C 
Sbjct: 62  EE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 238 TGRVNHAKELFVSMESMGC 256
             RV+ A E F  M ++GC
Sbjct: 121 AQRVDKAYEYFKRMRAVGC 139



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 5/203 (2%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+++ C+      ++ L ++ ++      PD  T++ LI C C+  RV      
Sbjct: 351 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEF 410

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CKPDAITYN-TIIDG---LCKQGFVDKAKELFLKMKD 148
           L  +      P+     +L++V CK   +    +++D    +CK G  D+A E+  +M  
Sbjct: 411 LDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVL 470

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           K V+P+  TY +V+R  C  +  + A   F +M  +G  P +VT+ +++ E C     D+
Sbjct: 471 KGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADD 530

Query: 209 ASSLLDLMIQHGVRPDAFTYNTL 231
           A  + + M+  G  P A T  TL
Sbjct: 531 AFRIFEAMVAAGFTPQAQTMRTL 553



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 34/253 (13%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  M+     P PV+ F  +L   +++K       + + + + G  P L T+++L++C 
Sbjct: 305 VFTRMMVHECIPHPVT-FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C    V     +  ++ R              K  +PDA TY  +I  LC+   VD+AKE
Sbjct: 364 CGADSVESALEIYHKMKR--------------KKRQPDANTYAPLIQCLCRARRVDEAKE 409

Query: 142 LFLKMKDKNVKPNVVTYTSVIR-------------------GFCYANDWNEAKRLFIEMM 182
               M+  NV PN     +++                      C A + +EA  +  +M+
Sbjct: 410 FLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMV 469

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +GV+P+  T+  ++  LC   ++D A +  + M   G  P   TY  L+   C     +
Sbjct: 470 LKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMAD 529

Query: 243 HAKELFVSMESMG 255
            A  +F +M + G
Sbjct: 530 DAFRIFEAMVAAG 542



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 6/194 (3%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I+  M R     P  +++  ++ CL + +  D        + +  + P+      L+
Sbjct: 372 ALEIYHKMKR-KKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 430

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFT--PDV---VTFTSLIKVCKPDAITYNTIIDGLCKQ 133
              CK G V     VL  ++  C    PD    V    ++K  +PD  TY  ++  LC  
Sbjct: 431 EVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGL 490

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             VD A   F KM  +   P +VTYT +I   C A+  ++A R+F  M+  G  P   T 
Sbjct: 491 DRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTM 550

Query: 194 NVIMDELCKNGKMD 207
             +   L   G  D
Sbjct: 551 RTLSSCLRDAGYQD 564


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 21/241 (8%)

Query: 18  EALCIFDYMLRMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +A  IFD M    PS    P + SF+ ++G L+KN   D  L  F+ + + GL PD   +
Sbjct: 220 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 275

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +ILI  FC+ G +S    V   +L               + C  D +TYNTI++GLCK+ 
Sbjct: 276 TILIGGFCRNGVMSEALKVRDEMLE--------------QGCVLDVVTYNTILNGLCKEK 321

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A ELF +M ++ V P+  T+T++I G+    + N+A  LF  M+ + ++P+VVT+N
Sbjct: 322 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYN 381

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D  CK  +M++ + L + MI   + P+  +Y  L++G+C  G V+ A  L+  M   
Sbjct: 382 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 441

Query: 255 G 255
           G
Sbjct: 442 G 442



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D ML        V ++N +L  L K K       LF  +   G+FPD YT + 
Sbjct: 289 SEALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN + K G ++    +   +++              +  KPD +TYNT+IDG CK   +
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQ--------------RNLKPDVVTYNTLIDGFCKGSEM 393

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K  EL+  M  + + PN ++Y  +I G+C     +EA RL+ EM+++G +  ++T N I
Sbjct: 394 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 453

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G   +A   L  M+  G+ PD  TYNTL++GF     ++ A  L   ME+ G
Sbjct: 454 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 512



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    +    +    L   ++  GL P ++T++ +IN  CK G+      V
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L  +L+   +PD  T+  L+  C                      PD ++++ +I  L K
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A + F  MK+  + P+ V YT +I GFC     +EA ++  EM++QG   +VVT
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N I++ LCK   + EA  L   M + GV PD +T+ TL++G+   G +N A  LF  M
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L KN+  +   S    +   G+FPD+ T++ LIN +C+ G +   F ++ 
Sbjct: 97  VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM- 155

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                    D ++   L    KP   TYN II+GLCK G   +AK +  +M    + P+ 
Sbjct: 156 ---------DSMSGKGL----KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 202

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C  ++  +A+R+F EM  QGV P++V+F+ ++  L KNG +D+A      
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 262

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M   G+ PD   Y  L+ GFC  G ++ A ++   M   GC
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 303



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 18/238 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+ +F+ M++ +  P  V+ +N ++    K    + V  L+  + S  ++P+  ++ I
Sbjct: 359 NKAVTLFEMMIQRNLKPDVVT-YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 417

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN +C MG VS  F +   ++   F   +              IT NTI+ G C+ G  
Sbjct: 418 LINGYCNMGCVSEAFRLWDEMVEKGFEATI--------------ITCNTIVKGYCRAGNA 463

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E    M  K + P+ +TY ++I GF    + + A  L  +M + G+ P+V+T+NVI
Sbjct: 464 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 523

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++   + G+M EA  ++  MI+ GV PD  TY +L++G       N+ KE F   + M
Sbjct: 524 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ---NNLKEAFRVHDEM 578



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +++ N +LG L K    D    +++ +  +G+  ++YT +I+IN  CK  ++ +      
Sbjct: 62  INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIEN------ 115

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                 F  D+       K   PD +TYNT+I+  C+QG +++A EL   M  K +KP V
Sbjct: 116 ---TKSFLSDMEE-----KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 167

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G C    +  AK +  EM+  G+ P+  T+N+++ E C+N  M +A  + D 
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 227

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   GV PD  +++ L+      G ++ A + F  M++ G
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 267



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  + + ++ ++    +   + +  E F  +K K +  ++    S++ G       + A 
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++ E++  GVQ NV T N++++ LCKN K++   S L  M + GV PD  TYNTL++ +
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G +  A EL  SM   G
Sbjct: 143 CRQGLLEEAFELMDSMSGKG 162


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN---STGLFPDLYTH 74
           EA  + D +    PS     S+N +L  L +  H+D   +L + ++        P+  ++
Sbjct: 63  EATSLLDAL----PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSY 118

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           ++L+   C   R++   V L R +RS                + D +TY T+I GLC   
Sbjct: 119 TVLMRALCA-DRLADQAVGLLRSMRSAGV-------------RADVVTYGTLIRGLCDAA 164

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VDKA EL  +M +  ++PNVV Y+S+++G+C +  W +  ++F+EM ++G++P+VV + 
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D LCK GK  +A  ++D+M++ G+ P+  TYN L++  C  G V  A  +   M   
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 255 G 255
           G
Sbjct: 285 G 285



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 24/254 (9%)

Query: 27  LRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           L  HP+  P   S+ +++  L  ++  D  + L + + S G+  D+ T+  LI   C   
Sbjct: 105 LEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
            V     ++G +  S   P+VV ++SL++  CK                    PD + Y 
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +ID LCK G   KA  +   M  + ++PNVVTY  +I   C      EA  +  +M ++
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVN 242
           GV P+VVT+N ++  L    +MDEA  LL+ M++    V+P+  T+N+++ G C  GR+ 
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMR 344

Query: 243 HAKELFVSMESMGC 256
            A ++   ME  GC
Sbjct: 345 QAFQVRAMMEETGC 358



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 131/245 (53%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ +L    K+  ++ V  +F  ++  G+ PD+  ++ LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  ++R    P+VVT+  LI  +CK                    PD +TYNT+I GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 133 QGFVDKAKELFLKM-KDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
              +D+A  L  +M + KN VKPNVVT+ SVI+G C      +A ++   M + G   N+
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+N+++  L +  K+ +A  L+D M   G+ PD+FTY+ L+ GFC   +V+ A++L  +
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 251 MESMG 255
           M   G
Sbjct: 423 MRDRG 427



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 15/214 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++G L +       + L   + S GL PD +T+SILI  FCKM +V     +L  +
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                 P++  +  L+                +C+QG +++A+ LF +M D N   +VV 
Sbjct: 424 RDRGIEPELFHYIPLLV--------------AMCEQGMMERARNLFNEM-DNNFPLDVVA 468

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C A D   AK L   ++D+G+ P+ VT++++++   K+G M+ A+ +L  M 
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G  PD   +++L+ G+   G +N   EL   M
Sbjct: 529 ASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 26/231 (11%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           + K K    V+ +  R    GL P++ T+++LINC CK G V     VL ++      PD
Sbjct: 233 VGKAKKAHGVMDMMVR---RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 106 VVTFTSLIK-----------------------VCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           VVT+ +LIK                       + KP+ +T+N++I GLC  G + +A ++
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              M++     N+VTY  +I G    +   +A  L  EM   G++P+  T+++++   CK
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCK 409

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D A  LL  M   G+ P+ F Y  LL   C  G +  A+ LF  M++
Sbjct: 410 MWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN 460



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 60/292 (20%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI--- 78
           + D M+R     P V ++N+++ C+ K       + + K+++  G+ PD+ T++ LI   
Sbjct: 242 VMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 79  ----------------------------------NCFCKMGRVSHGFVVLGRILRSCFTP 104
                                                C +GR+   F V   +  +    
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 105 DVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVDKAKELF 143
           ++VT+  LI       KV K              PD+ TY+ +I G CK   VD+A++L 
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL 420

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             M+D+ ++P +  Y  ++   C       A+ LF EM D     +VV ++ ++   CK 
Sbjct: 421 STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKA 479

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G +  A  LL  ++  G+ PDA TY+ +++ F  +G +  A  +   M + G
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG 531



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  V +++ M+    K     T   L K +   GL PD  T+SI+IN F K G +     
Sbjct: 463 PLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANG 522

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           VL ++  S F PDV  F SLI+              G   +G ++K  EL  +M  KN+
Sbjct: 523 VLKQMTASGFLPDVAVFDSLIQ--------------GYSTKGEINKVLELIREMITKNI 567


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 131/257 (50%), Gaps = 22/257 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL  +  M R     P V SF+ ++G   +    D      + +   GL PD   +++
Sbjct: 281 EEALRFYKEM-RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I  FC+ G +     V   ++     PDVVT+ +L+  +CK                  
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+ T+I G C+ G ++KA + F  + D+ ++P++VTY ++I G C   D  +A 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ +M  + + PN VT+++++D  C+ G++D A + LD M+  G+ P+  TYN+++ G+
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 236 CLTGRVNHAKELFVSME 252
           C +G V+  ++    M 
Sbjct: 520 CRSGNVSKGQQFLPKMR 536



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN+++G   +    +  L  +K +    + PD+ + S LI  F + G + H    
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      PD V +T +I                       C PD +TYNT+++GLCK
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +  A+EL  +MK++ V P++ T+T++I G+C   +  +A + F  + DQ ++P++VT
Sbjct: 382 ERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D +C+ G + +A+ L D M    + P+  TY+ L+D  C  G+V++A      M 
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMV 501

Query: 253 SMG 255
           + G
Sbjct: 502 NKG 504



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D M+      P V ++N +L  L K +       L   +   G+ PDL T + L
Sbjct: 352 EALRVRDEMVAFG-CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C+ G +         I      PD+VT+ +LI  +C+                   
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREI 470

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TY+ +ID  C++G VD A     +M +K + PN++TY S+I+G+C + + ++ ++
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQ 530

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              +M    V P+++T+N ++    K GKM EA +LL +M    V+PDA TYN ++ GF 
Sbjct: 531 FLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFS 590

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G +  A  ++  M + G
Sbjct: 591 VHGNMQEADWVYKKMGARG 609



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  + +         L+  ++S  +FP+  T+SILI+  C+ G+V + F  
Sbjct: 437 PDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAF 496

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     P++              +TYN+II G C+ G V K ++   KM+   V P
Sbjct: 497 LDEMVNKGIVPNI--------------MTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMP 542

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +++TY ++I G+      +EA  L   M ++ VQP+ VT+N+I+     +G M EA  + 
Sbjct: 543 DLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVY 602

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M   G+ PD +TY ++++G  + G    + +L   M   G
Sbjct: 603 KKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKG 644



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 14/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + NIM+    K   +  V ++   +    +FPD+ TH+++++   + G V     ++  +
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +               K  KP  +TYN+++ GL + G  DKA+E+F  M    V P+V +
Sbjct: 221 VS--------------KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS 266

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +  +I GFC A +  EA R + EM  + V P+VV+F+ ++    + G+MD A+  L  M 
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR 326

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G+ PD   Y  ++ GFC  G +  A  +   M + GC
Sbjct: 327 EFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGC 365


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 136/270 (50%), Gaps = 31/270 (11%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKN--------KHYDTVLSLFKRLNSTG 66
            EAL +   M   R   SPP V S+N +L    K         +  D  + +   +   G
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNG 239

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------- 117
           + PD  T++ +++ +C  G+       L ++      P+VVT++SL+  +CK        
Sbjct: 240 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 299

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD  TY T++ G CK+G V ++++LF  M    VKP+++TY ++I G 
Sbjct: 300 KIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGC 359

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A   +EA +L   M+  GV+P++VT+  +++  C+  +MD+A +L   M+  GV P+ 
Sbjct: 360 CLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNI 419

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TYN +L G   T R   AKEL+VS+   G
Sbjct: 420 ITYNIILQGLFHTRRTAAAKELYVSITKSG 449



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 73/309 (23%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P ++T+
Sbjct: 38  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTY 95

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
           +ILI C C+ GR+  GF  LG +++  F  D +TFT L+K                    
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 115 --VCKPDAITYNTIIDGLCKQ---------------------------------GF---- 135
              C PD  +YN ++ GLC +                                 GF    
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 136 ---------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
                    +DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV
Sbjct: 216 IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 275

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +PNVVT++ +M+ LCKNG+  EA  + D M + G+ PD  TY TLL G C  GRV  +++
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 247 LFVSMESMG 255
           LF  M  +G
Sbjct: 336 LFDLMVRIG 344



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 11/226 (4%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V S+N +L  L         L L   +      G  PD+ +++ ++N F K G     
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG----- 215

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
             +  ++        +    +++K    PD +TYN+I+ G C  G   +A     KM+  
Sbjct: 216 --IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            V+PNVVTY+S++   C      EA+++F  M  +G++P++ T+  ++   CK G++ E+
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIES 333

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L DLM++ GV+PD  TYNTL+DG CL G+++ A +L  SM S+G
Sbjct: 334 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 379



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 134/262 (51%), Gaps = 22/262 (8%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           +T    ++A+ + + M++    P  ++  +I+ G  +  +  + + +L K++ S G+ P+
Sbjct: 220 LTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL-KKMRSDGVEPN 278

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------- 115
           + T+S L+N  CK GR +    +   + +    PD+ T+ +L++                
Sbjct: 279 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFD 338

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                  KPD ITYNT+IDG C  G +D+A +L   M    VKP++VTY ++I G+C  +
Sbjct: 339 LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVS 398

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             ++A  LF EM+  GV PN++T+N+I+  L    +   A  L   + + G + +  TYN
Sbjct: 399 RMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYN 458

Query: 230 TLLDGFCLTGRVNHAKELFVSM 251
            +L G C     + A  +F ++
Sbjct: 459 IILHGLCKNNLTDEALRMFQNL 480



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+     M R     P V +++ ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 260 PKEAIGTLKKM-RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 318

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------- 116
            L+   CK GRV     +   ++R    PD++T+ +LI  C                   
Sbjct: 319 TLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV 378

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KPD +TY T+I+G C+   +D A  LF +M    V PN++TY  +++G  +      A
Sbjct: 379 GVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA 438

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           K L++ +   G Q  + T+N+I+  LCKN   DEA  +   +    ++ +  T+N ++  
Sbjct: 439 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 498

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GR++ AK+LF +  + G
Sbjct: 499 LLKCGRMDEAKDLFAAHSANG 519



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 57/272 (20%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E+  +FD M+R+   P  ++   ++ GC    K  D    L   + S G+ PD+ T+  L
Sbjct: 332 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTL 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKP-- 118
           IN +C++ R+     +   ++ S  +P+++T+  +++                 + K   
Sbjct: 391 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 450

Query: 119 --DAITYNTIIDGLCKQ-----------------------------------GFVDKAKE 141
             +  TYN I+ GLCK                                    G +D+AK+
Sbjct: 451 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKD 510

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF       + P+V TY+ +           E   LF+ M + G   +    N I+ +L 
Sbjct: 511 LFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLL 570

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           + G +  A + L ++ +     +A T + LL+
Sbjct: 571 QRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           P+ YT++ LI+  C+ G+V     VL  +L     PDVVT+  L++              
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C P+ +TYN ++DG+C +G VD A EL   +     KP+ V Y +V++G C 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W +A  L  EM+ +   PN  TFNV++  LC+ G + +A  LL+ M +HG   +  T
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 184

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           YN +++G C    V+ A  L   M+S GC
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGC 213



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + D ML      P V ++NI+L    K + Y   + L   + + G  P+  T+++L
Sbjct: 25  DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 83

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           ++  C  G V     +L  +      P  V + +++K                      C
Sbjct: 84  MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T+N +I  LC++G + +A +L  KM       N+VTY ++I G C   + + A  
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 203

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M   G +P++VT+N ++  LC   +  +A  L+D M Q+G  PD  T+NTL+   C
Sbjct: 204 LLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 263

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G +  A E+F  M   GC
Sbjct: 264 QKGLMVDAIEVFKQMPDKGC 283



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 56/281 (19%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR +  PP  ++FN+++  L +       + L ++++  G   ++ T++ +IN  C+  
Sbjct: 138 MLREN-CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQR 196

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
            V     +L ++      PD+VT+ +L+K                      C PD +T+N
Sbjct: 197 NVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFN 256

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM--- 181
           T+I  LC++G +  A E+F +M DK   PN +TY+++I G   A   ++A  LF EM   
Sbjct: 257 TLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHK 316

Query: 182 -------------------------------MDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
                                           D G+ P+ V +N I+  LC+NGK + A 
Sbjct: 317 GFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 376

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++  M+  G  PD  TY  L++G    G +N A+EL + +
Sbjct: 377 DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P   ++N+++  +      D  L L + L S G  P    ++ +
Sbjct: 60  QAMELIDLM-RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 118

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +   C   R      ++  +LR    P+  TF  +I                       C
Sbjct: 119 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 178

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             + +TYN II+GLC+Q  VD A  L  KMK    KP++VTY ++++G C A  W +A+ 
Sbjct: 179 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M   G  P+ VTFN ++  LC+ G M +A  +   M   G  P++ TY+T++ G  
Sbjct: 239 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 298

Query: 237 LTGRVNHAKELFVSMESMG 255
              +++ A ELF  M   G
Sbjct: 299 KATKLDQALELFNEMGHKG 317



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 72/140 (51%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+A TYN +I  LC++G V  A  +   M  +   P+VVTY  ++   C    + +A  
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M  +G  PN VT+NV+MD +C  G +D+A  LL  +  HG +P    YNT+L G C
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 237 LTGRVNHAKELFVSMESMGC 256
              R   A EL   M    C
Sbjct: 124 SAERWGDADELVTEMLRENC 143



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V+PN  TY  +I   C      +A  +  +M+ +G  P+VVT+N++++  CK     +A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L+DLM   G  P+  TYN L+DG C  G V+ A EL  ++ S GC
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGC 108



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++G L +       + +FK++   G  P+  T+S +I+   K  ++     +
Sbjct: 250 PDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALEL 309

Query: 94  LGRILRSCFTPDVV------------TFTSLIKVCK--------PDAITYNTIIDGLCKQ 133
              +    F PD +            T    I+  +        P  + YN I+ GLC+ 
Sbjct: 310 FNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRN 369

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           G  + A ++   M      P+ +TY  +I G  Y    NEA+ L I++  + V  N
Sbjct: 370 GKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVN 425


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 17/210 (8%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------- 115
            TG  PD+ T + L+N  C  GRV     ++ R++     P       L K+        
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALN 62

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                     K   + YN IID LCK G    A+ LF +M DK + P+V+TY+ +I  FC
Sbjct: 63  LLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFC 122

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            +  W +A++L  +M+++ + P+VVTF+ +++ L K GK+ EA  +   M++ G+ P   
Sbjct: 123 RSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTI 182

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TYN+++DGFC   R+N AK +  SM S  C
Sbjct: 183 TYNSMIDGFCKQDRLNDAKRMLDSMASKSC 212



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 21/219 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L K+ H+    +LF  ++  G+FPD+ T+S +I+ FC+ GR +    +L  ++
Sbjct: 79  YNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMI 138

Query: 99  RSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVD 137
                PDVVTF++LI       KV +              P  ITYN++IDG CKQ  ++
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLN 198

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK +   M  K+  P+VVT++++I G+C A   +    +F EM  +G+  N VT+  ++
Sbjct: 199 DAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI 258

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              C+ G +D A  LL++MI  GV P+  T+ ++L   C
Sbjct: 259 HGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++  L         L+L  R+   G  P    +  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L ++  +     VV + ++I ++CK                    PD ITY+ +ID  C+
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A++L   M ++ + P+VVT++++I         +EA+ ++ +M+ +G+ P  +T
Sbjct: 124 SGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTIT 183

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK  ++++A  +LD M      PD  T++TL++G+C   RV++  E+F  M 
Sbjct: 184 YNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMH 243

Query: 253 SMG 255
             G
Sbjct: 244 RRG 246



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ M+    ++  +     L + +    + PD+ T S LIN   K G+VS    +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
            G +LR    P  +T+ S+I                     K C PD +T++T+I+G CK
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK 228

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   E+F +M  + +  N VTYT++I GFC   D + A+ L   M+  GV PN +T
Sbjct: 229 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYIT 288

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           F  ++  LC   ++ +A ++L+ + +  V P
Sbjct: 289 FQSMLASLCSKKELRKAFAILEDLQKSEVCP 319



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++  L K         ++  +   G+FP   T++ +I+ FCK  R++    +
Sbjct: 144 PDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRM 203

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           L  +     +PDVVTF++LI   CK                     + +TY T+I G C+
Sbjct: 204 LDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQ 263

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G +D A++L   M    V PN +T+ S++   C   +  +A  +  ++    V P +V
Sbjct: 264 VGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 31/137 (22%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP----------------- 188
           M +   +P+VVT+T+++ G C      +A  L   M+++G QP                 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 189 --------------NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                         +VV +N I+D LCK+G    A +L   M   G+ PD  TY+ ++D 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR   A++L   M
Sbjct: 121 FCRSGRWTDAEQLLRDM 137



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G +P+VVTF  +M+ LC  G++ +A +L+D M++ G +P    Y T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 241 VNHAKELFVSMES 253
              A  L   ME 
Sbjct: 57  TESALNLLSKMEE 69


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+ +    P + +++ ++  L K +  ++V+ L K + + GL P++YT +I 
Sbjct: 208 EAMEVYRRMI-LDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTIC 266

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G+++  + +L R+                + C PD +TY  +ID LC    +D
Sbjct: 267 IRVLGRAGKINEAYEILKRMDD--------------EGCGPDVVTYTVLIDALCTARKLD 312

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKE+F KMK    KP+ VTY +++  F    D +   + + EM   G  P+VVTF +++
Sbjct: 313 CAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILV 372

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK G   EA + LD+M   G+ P+  TYNTL+ G     R++ A E+F +MES+G
Sbjct: 373 DALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLG 430



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 15/236 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  F+ M +     P + + N  L  LAK         +F  L   GL PD  T+++++
Sbjct: 454 ALETFEKM-KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 512

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
            C+ K+G +     +L  ++ +C              C+PD I  N++I+ L K   VD+
Sbjct: 513 KCYSKVGEIDEAIKLLSEMVENC--------------CEPDVIVVNSLINTLYKADRVDE 558

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A ++F++MK+  +KP VVTY +++ G        EA  LF  M+ +G  PN +TFN + D
Sbjct: 559 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 618

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            LCKN ++  A  +L  M+  G  PD FTYNT++ G    G+V  A   F  M+ +
Sbjct: 619 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 674



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+++G L +    +    +F ++ +TG  PD+ T++ L++ + K G++   F +
Sbjct: 785 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
              +                  C+P+ IT+N +I GL K G VD A +L+   M D++  
Sbjct: 845 YKEMS--------------AHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 890

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P   TY  +I G   +    EAK+LF  M D G +PN   +N++++   K G+ D A +L
Sbjct: 891 PTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACAL 950

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M++ GVRPD  TY+ L+D  C+ GRV+     F  ++  G
Sbjct: 951 FKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESG 993



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D M R     P + ++N ++  L +    D  L +F  + S G+ P  YT+ + 
Sbjct: 383 EAFAKLDVM-RDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVF 441

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK---------------- 117
           I+ + K G          ++      P++V    +  SL K  +                
Sbjct: 442 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGL 501

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD++TYN ++    K G +D+A +L  +M +   +P+V+   S+I     A+  +EA +
Sbjct: 502 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWK 561

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F+ M +  ++P VVT+N ++  L KNGK+ EA  L + M+Q G  P+  T+NTL D  C
Sbjct: 562 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 621

Query: 237 LTGRVNHAKELFVSMESMGC 256
               V  A ++   M  MGC
Sbjct: 622 KNDEVTLALKMLFKMMDMGC 641



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 15/199 (7%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P  + +NI++    K    D   +LFKR+   G+ PDL T+S+L++C C +GRV  G   
Sbjct: 926  PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 985

Query: 94   LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK-DKNVK 152
               +  S   PDVV               YN II+GL K   +++A  LF +MK  + + 
Sbjct: 986  FRELKESGLNPDVVC--------------YNLIINGLGKFHRLEEALVLFNEMKKSRGIT 1031

Query: 153  PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            P++ TY S+I     A    EA +++ E+   G++PNV TFN ++     +GK + A ++
Sbjct: 1032 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAV 1091

Query: 213  LDLMIQHGVRPDAFTYNTL 231
               M+  G  P+  TY  L
Sbjct: 1092 YQTMVTGGFSPNTGTYEQL 1110



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            ++AL ++  ++      P   ++  ++  L+K+        LF+ ++  G  P+   ++I
Sbjct: 874  DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNI 933

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            LIN F K G       +  R+++              +  +PD  TY+ ++D LC  G V
Sbjct: 934  LINGFGKAGEADAACALFKRMVK--------------EGVRPDLKTYSVLVDCLCMVGRV 979

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVVTFNV 195
            D+    F ++K+  + P+VV Y  +I G    +   EA  LF EM   +G+ P++ T+N 
Sbjct: 980  DEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNS 1039

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  L   G ++EA  + + + + G+ P+ FT+N L+ G+ L+G+  HA  ++ +M + G
Sbjct: 1040 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1099



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I +  L +    +    + KR++  G  PD+ T+++LI+  C   ++     V
Sbjct: 258 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 317

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             ++      PD VT+ +L+                         PD +T+  ++D LCK
Sbjct: 318 FAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCK 377

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A      M+D+ + PN+ TY ++I G    +  ++A  +F  M   GV+P   T
Sbjct: 378 AGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYT 437

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V +D   K+G    A    + M   G+ P+    N  L      GR   AK++F  ++
Sbjct: 438 YIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK 497

Query: 253 SMG 255
            +G
Sbjct: 498 DIG 500



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 17/218 (7%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS--HGFVVLGRILR 99
           ++G +      D  +S  +RL + G+  D    SIL+       R S  H      R+L 
Sbjct: 721 LMGSILAEAGIDNAVSFSERLVANGICRD--GDSILVPII----RYSFKHNNASGARMLF 774

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
             FT D+          +P   TYN +I GL +   ++ A+++FL++K+    P+V TY 
Sbjct: 775 EKFTKDLGV--------QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYN 826

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQ 218
            ++  +  +   +E   ++ EM     +PN +T N+++  L K G +D+A  L  DLM  
Sbjct: 827 FLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSD 886

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               P A TY  L+DG   +GR+  AK+LF  M   GC
Sbjct: 887 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGC 924



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 73/135 (54%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +A +YN +I  L K  F  +A E++ +M     +P++ TY+S++ G     D      L 
Sbjct: 189 NAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLL 248

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM   G++PNV TF + +  L + GK++EA  +L  M   G  PD  TY  L+D  C  
Sbjct: 249 KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTA 308

Query: 239 GRVNHAKELFVSMES 253
            +++ AKE+F  M++
Sbjct: 309 RKLDCAKEVFAKMKT 323



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 61/296 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M++    PP   +FN +  CL KN      L +  ++   G  PD++T++ 
Sbjct: 592 QEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 650

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKP----------------- 118
           +I    K G+V        ++ +  + PD VT  +L+  V K                  
Sbjct: 651 IIFGLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSC 709

Query: 119 -----------------------DAITYNT--IIDGLCKQG---------------FVDK 138
                                  +A++++   + +G+C+ G                   
Sbjct: 710 ADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASG 769

Query: 139 AKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           A+ LF K  KD  V+P + TY  +I G   A+    A+ +F+++ + G  P+V T+N ++
Sbjct: 770 ARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLL 829

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           D   K+GK+DE   +   M  H   P+  T+N ++ G    G V+ A +L+  + S
Sbjct: 830 DAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMS 885



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 14/197 (7%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
            +++   G   + Y+++ LI+   K    +    V  R++   F P + T++SL+     
Sbjct: 178 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMV---- 233

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
                     GL K+  ++    L  +M+   +KPNV T+T  IR    A   NEA  + 
Sbjct: 234 ----------GLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 283

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M D+G  P+VVT+ V++D LC   K+D A  +   M     +PD  TY TLLD F   
Sbjct: 284 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDN 343

Query: 239 GRVNHAKELFVSMESMG 255
             ++   + +  ME  G
Sbjct: 344 RDLDSVNQFWSEMEKDG 360



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 59/298 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M  M   P  V ++N +L  L KN      + LF+ +   G  P+  T + 
Sbjct: 557 DEAWKMFMRMKEMKLKPT-VVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT 615

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVC 116
           L +C CK   V+    +L +++     PDV T+ ++I                    K+ 
Sbjct: 616 LFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLV 675

Query: 117 KPDAITYNTIIDGLCKQGFVDKA--------------------KELFLKMKDKNVKPNVV 156
            PD +T  T++ G+ K G ++ A                    ++L   +  +    N V
Sbjct: 676 YPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAV 735

Query: 157 TYTS--VIRGFC------------YA---NDWNEAKRLFIEMM-DQGVQPNVVTFNVIMD 198
           +++   V  G C            Y+   N+ + A+ LF +   D GVQP + T+N+++ 
Sbjct: 736 SFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIG 795

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L +   ++ A  +   +   G  PD  TYN LLD +  +G+++   E++  M +  C
Sbjct: 796 GLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHEC 853



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           ++ K D  TY TI   L  +G + +A     KM++     N  +Y  +I     +    E
Sbjct: 149 RIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 208

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M+  G +P++ T++ +M  L K   ++    LL  M   G++P+ +T+   + 
Sbjct: 209 AMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIR 268

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                G++N A E+   M+  GC
Sbjct: 269 VLGRAGKINEAYEILKRMDDEGC 291



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 60/134 (44%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T N +++ L   G +++   +F  M+ + +K +  TY ++ +         +A     +M
Sbjct: 122 TCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKM 181

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            + G   N  ++N ++  L K+    EA  +   MI  G RP   TY++L+ G      +
Sbjct: 182 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDI 241

Query: 242 NHAKELFVSMESMG 255
                L   ME++G
Sbjct: 242 ESVMGLLKEMETLG 255


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 134/260 (51%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  IF  MLR    P  VS F+ ++   ++N+H D  L  F+ +   GL PD   +++
Sbjct: 88  SEAKEIFGEMLRQGVVPDLVS-FSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++ +C+ G +     +   +L      DV+ + +++  +CK                  
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 206

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+ T+I G C+ G + KA  LF  M  +N+KP++V Y ++I GFC   +  +A 
Sbjct: 207 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 266

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+  M+ + + PN +T+ ++++  C  G + EA  L D+MI+ G++P   T NT++ G+
Sbjct: 267 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 326

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C +G  + A E    M + G
Sbjct: 327 CRSGDSSKADEFLGRMIAKG 346



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K   Y     +   + + GL PD  T++ L+   C+    S    +
Sbjct: 34  PSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEI 93

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
            G +LR    PD+V+F+SL+ V                       PD + Y  ++ G C+
Sbjct: 94  FGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCR 153

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A ++  +M ++    +V+ Y +++ G C      +A +LF EM+++G  P+  T
Sbjct: 154 NGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYT 213

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   C++G M +A SL   M Q  ++PD   YNTL+DGFC  G +  A EL+  M 
Sbjct: 214 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI 273

Query: 253 S 253
           S
Sbjct: 274 S 274



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 14/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++G   +    +    +   +   GL P L+T++ +IN  CK GR +    +L  +
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L    +PD  T              YNT++   C++    +AKE+F +M  + V P++V+
Sbjct: 63  LNIGLSPDTTT--------------YNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVS 108

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           ++S++  F      ++A   F +M   G+ P+ V + V+M   C+NG M EA  + D M+
Sbjct: 109 FSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEML 168

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G   D   YNT+L+G C    +  A +LF  M   G 
Sbjct: 169 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGA 207



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           + T++ LI  +C+ G +   F ++  +                K  KP   TYN II+GL
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMAD--------------KGLKPSLFTYNAIINGL 46

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+G   +AK + ++M +  + P+  TY +++   C  ++++EAK +F EM+ QGV P++
Sbjct: 47  CKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDL 106

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V+F+ +M    +N  +D+A      M + G+ PD   Y  L+ G+C  G +  A ++   
Sbjct: 107 VSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDE 166

Query: 251 MESMGC 256
           M   GC
Sbjct: 167 MLEQGC 172


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 17/210 (8%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------- 115
            TG  PD+ T + L+N  C  GRV     ++ R++     P       L K+        
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALN 62

Query: 116 ---------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                     K   + YN IID LCK G    A+ LF +M DK + P+V+TY+ +I  FC
Sbjct: 63  LLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFC 122

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            +  W +A++L  +M+++ + P+VVTF+ +++ L K GK+ EA  +   M++ G+ P   
Sbjct: 123 RSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTI 182

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TYN+++DGFC   R+N AK +  SM S  C
Sbjct: 183 TYNSMIDGFCKQDRLNDAKRMLDSMASKSC 212



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 21/219 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L K+ H+    +LF  ++  G+FPD+ T+S +I+ FC+ GR +    +L  ++
Sbjct: 79  YNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMI 138

Query: 99  RSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVD 137
                PDVVTF++LI       KV +              P  ITYN++IDG CKQ  ++
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLN 198

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK +   M  K+  P+VVT++++I G+C A   +    +F EM  +G+  N VT+  ++
Sbjct: 199 DAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI 258

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              C+ G +D A  LL++MI  GV P+  T+ ++L   C
Sbjct: 259 HGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++  L         L+L  R+   G  P    +  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L ++  +     VV + ++I ++CK                    PD ITY+ +ID  C+
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A++L   M ++ + P+VVT++++I         +EA+ ++ +M+ +G+ P  +T
Sbjct: 124 SGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTIT 183

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK  ++++A  +LD M      PD  T++TL++G+C   RV++  E+F  M 
Sbjct: 184 YNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMH 243

Query: 253 SMG 255
             G
Sbjct: 244 RRG 246



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 21/202 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ M+    ++  +     L + +    + PD+ T S LIN   K G+VS    +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
            G +LR    P  +T+ S+I                     K C PD +T++T+I+G CK
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK 228

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   E+F +M  + +  N VTYT++I GFC   D + A+ L   M+  GV PN +T
Sbjct: 229 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYIT 288

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
           F  ++  LC   ++ +A ++L+
Sbjct: 289 FQSMLASLCSKKELRKAFAILE 310



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 31/137 (22%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP----------------- 188
           M +   +P+VVT+T+++ G C      +A  L   M+++G QP                 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 189 --------------NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                         +VV +N I+D LCK+G    A +L   M   G+ PD  TY+ ++D 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 235 FCLTGRVNHAKELFVSM 251
           FC +GR   A++L   M
Sbjct: 121 FCRSGRWTDAEQLLRDM 137



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M++ G +P+VVTF  +M+ LC  G++ +A +L+D M++ G +P    Y T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 241 VNHAKELFVSMES 253
              A  L   ME 
Sbjct: 57  TESALNLLSKMEE 69


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFNI++G   +    +  +  +K +   G+ PD+ + S LI  F   G++ H    
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      PD V +T +I                       C PD +TYNT+++GLCK
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +  A+EL  +MK++ V P++ T+T++I G+C   ++ +A +LF  ++ Q ++P+VV 
Sbjct: 380 QHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVA 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D +C+ G + +A+ L D M    + P+  TY+ L+D  C  G+V  A      M 
Sbjct: 440 YNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMV 499

Query: 253 SMG 255
           S G
Sbjct: 500 SKG 502



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF+ ++G  +     D   +  + +   GL PD   ++++I  FC+ G +S    V
Sbjct: 295 PDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     PDVVT+ +L+  +CK                    PD  T+ T+I G C+
Sbjct: 355 RDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCR 414

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  +KA +LF  +  + ++P+VV Y S+I G C   D  +A  L+ +M  + + PN VT
Sbjct: 415 DGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVT 474

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +++++D  C+ G+++EA   LD M+  G  P+  TYN+++ G+C +G V   ++    M
Sbjct: 475 YSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D M+ +    P V ++N +L  L K         L   +   G+ PDL T + 
Sbjct: 349 SEALRVRDEMVGL-GCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +C+ G       +   +L     PDVV + SLI  +C+                  
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY+ +ID  C++G V++A     +M  K   PN++TY S+I+G+C + +  + +
Sbjct: 468 IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQ 527

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +   +MM   + P+++TFN ++    K   M  A ++ ++M +  V+PDA TYN +++GF
Sbjct: 528 QFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGF 587

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G +  A  +F  M + G
Sbjct: 588 SEQGNMEEAGRVFKKMGASG 607



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 14/219 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + NIM+    K+  +D   ++   +    +FPD+ TH++LI+   + G V     ++  +
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                 P +VTF              N+++ GLCK    DKAKE+F  M   +V P+V +
Sbjct: 219 ANKGLKPGIVTF--------------NSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS 264

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +  +I GFC   +  EA + + EM  +GV P+VV+F+ ++      GKMD A++ L  M 
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMK 324

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G+ PD   Y  ++ GFC  G ++ A  +   M  +GC
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGC 363



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 21/235 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + +++G   +       L +   +   G  PD+ T++ L+N  CK  R+     +L  + 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
               TPD+ TFT+LI                     +  +PD + YN++IDG+C++G + 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL+  M  + + PN VTY+ +I   C      EA     EM+ +G  PN++T+N I+
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C++G + +    L  M+Q  + PD  T+NTL+ G+     ++ A  +F  ME
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIME 569



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD +L     P  V ++N ++  + +         L+  +++  +FP+  T+SI
Sbjct: 419 EKALQLFDTLLHQRLRPD-VVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSI 477

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G+V   F          F  ++V+  +L     P+ +TYN+II G C+ G V
Sbjct: 478 LIDSHCEKGQVEEAF---------GFLDEMVSKGNL-----PNIMTYNSIIKGYCRSGNV 523

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            K ++   KM   N+ P+++T+ ++I G+    + + A  +F  M  + VQP+ VT+N+I
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   + G M+EA  +   M   G+ PD +TY +L++G    G    A +L   M   G
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRG 642


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  +L  L + + ++   S+F+ + + G  P+++++SILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++     P+VVT+ SL+                     + C PD + YN +IDG  K
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  LF +M +K   P V TY S++ GF    ++   + LF +M+ QG  PN+ T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK G M EA  L   M   G  PD  +YNTL+ G C  G+ + A+ L   M 
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMI 289

Query: 253 SMG 255
             G
Sbjct: 290 RSG 292



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  +L  L K       + LF R+   G  PD   +++LI+ F K G +   + +
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P V T+ SL+                     + C P+  T+N ++DG CK
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  LFL+M+     P+VV+Y ++IRG C     +EA+RL  EM+  GV P++V+
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D   K+G +D A  L   + + G+ PDAF+Y+T++D  C  G+V  A  +F  M 
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 253 SMG 255
           + G
Sbjct: 360 ANG 362



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+N +L  LAK+   D V   +  + + G  P+ YT+  L+   C+  R      V   +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                +P+V +++ LI  +C+                    P+ +TY +++ GLCK G +
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +LF +M  +   P+ V Y  +I GF    D  EA RLF EM+++G  P V T+N +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +    + G+     SL   M++ G  P+ FT+N LLDGFC  G +  A  LF+ M S+GC
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F+ ML      P V ++N +L   ++   +  V SLFK +   G  P+++T + 
Sbjct: 174 GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 77  LINCFCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           L++ FCKMG +  +H   +  R L                 C PD ++YNT+I G+C +G
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLG----------------CPPDVVSYNTLIRGMCSKG 276

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +A+ L  +M    V P++V+Y  +I G+  +   + A +LF E+   G++P+  +++
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I+D LC+ GK+  A  +   MI +G  PDA     L+ G C   R+  + ELF +M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 255 GC 256
            C
Sbjct: 397 EC 398



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 75/136 (55%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ++YN +++ L K G  D     +  M      PN  TY  ++R  C A  + EA+ +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  QG  PNV ++++++  LC+  K+DEA+ LL+ MI  G +P+  TY +LL G C  G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 241 VNHAKELFVSMESMGC 256
           +  A +LF  M   GC
Sbjct: 138 LKEAVDLFSRMVYRGC 153



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 22/233 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  MLR     P + +FN +L    K         LF  + S G  PD+ +++ LI   
Sbjct: 214 LFKDMLR-QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGM 272

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           C  G+      +L  ++RS   PD+V++  LI                        +PDA
Sbjct: 273 CSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDA 332

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            +Y+TIID LC+ G V  A  +F  M      P+      ++ G C      E+  LF  
Sbjct: 333 FSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQA 392

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           M+     P +  +N++M +LCK  + D+   +   + + G  PD      +L+
Sbjct: 393 MVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 15/195 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+EA  +   M+R    P  VS +NI++   +K+   D  + LF  +  +GL PD +++S
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVS-YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +I+C C+ G+V   FVV           D++   S      PDA     ++ GLC+   
Sbjct: 337 TIIDCLCRAGKVGAAFVVF---------KDMIANGS-----APDAAVVIPLVIGLCRGER 382

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + ++ ELF  M      P +  Y  ++   C A   ++   +F E+ ++G  P+V    V
Sbjct: 383 LTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKV 442

Query: 196 IMDELCKNGKMDEAS 210
           I++ L ++   D A 
Sbjct: 443 ILETLRRSDDKDAAE 457


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   + ++G+ PD+YT+S+LIN  CK  R+     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
            G +L +   P+ VTFT+LI   CK                    PD +TYNT+I GLCK
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A+ L  +M  K +KP+ +TYT++I G C   D   A  L   M+ + ++ + V 
Sbjct: 289 KGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVV 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M++ G++PD  TY  +++ FC  G V  A EL   M+
Sbjct: 349 YTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RNG 411



 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 21/247 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  TY+
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D+A  LF +M D  + PN VT+T++I G C     + A  ++ +M++Q
Sbjct: 211 VLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+VVT+N ++  LCK G + +A  LLD M + G++PD  TY TL+DG C  G +  A
Sbjct: 271 GFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 245 KELFVSM 251
            EL   M
Sbjct: 331 FELRERM 337



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 21/218 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +     +  ++L   F+PDVVT+ +LI                     K  KPD ITY T
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A EL  +M  ++++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +IM+E CK G + +AS LL  M ++G  P
Sbjct: 377 LKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N+++  L   K  +    + K +   G+ PD+ T++I IN +C+ G       +  
Sbjct: 357 VFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFD 416

Query: 96  RILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCKQG 134
            ++     P V T+TSLI V                       PD I +N +IDG C  G
Sbjct: 417 EMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNG 476

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A +L  +M +  V P+ VT+ ++++G+C      EAK+L  EM ++G++P+ +++N
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYN 536

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++    K G M +A  + D M+  G  P   TYN L+ G+   G  +HA+EL   M+S 
Sbjct: 537 TLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSK 596

Query: 255 G 255
           G
Sbjct: 597 G 597



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N  +  L K +  +    +  +L  +GL P+  T++ LI+  C  G +   F  
Sbjct: 285 PDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAY 344

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              ++       V T+  LI                     K  +PD +TYN  I+G C+
Sbjct: 345 RDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCR 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   KA  LF +M +KN++P V TYTS+I  F   N  +EA+  F + + +G+ P+++ 
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  C NG +D A  LL  M    V PD  T+NTL+ G+C   +V  AK+L   M+
Sbjct: 465 FNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK 524

Query: 253 SMG 255
             G
Sbjct: 525 ERG 527



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 15/233 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +++ M++M+     V+ FNIM+  L +   +         +   G+ P++ T++ +I
Sbjct: 201 AWFVYEEMVKMNIKSSIVT-FNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVI 259

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N +C  G+    F    +I +          T   K  KPD  TYN+ I  LCK+  +++
Sbjct: 260 NGYCLRGK----FEAASKIFK----------TMKDKNLKPDCYTYNSFISRLCKERRIEE 305

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +  K+ +  + PN VTY ++I G C   D ++A     EMM++G+  +V T+N+++ 
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIH 365

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            L    +++EA  ++  M + GV PD  TYN  ++G+C  G    A  LF  M
Sbjct: 366 ALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           + T +I+IN  C+ G+       +G +               +   KP+ +TYNT+I+G 
Sbjct: 217 IVTFNIMINILCREGKWKKAKDFIGHME--------------VYGVKPNVVTYNTVINGY 262

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C +G  + A ++F  MKDKN+KP+  TY S I   C      EA  +  ++++ G+ PN 
Sbjct: 263 CLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNA 322

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+N ++D  C  G +D+A +  D M+  G+    FTYN L+    L  R+  A+++   
Sbjct: 323 VTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKE 382

Query: 251 MESMG 255
           M   G
Sbjct: 383 MREKG 387



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 23/224 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++NI +    +  +    LSLF  +    + P + T++ LI+ F K  R
Sbjct: 383 MREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNR 442

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYN 124
           +S       + ++    PD++ F +LI                      KV  PD +T+N
Sbjct: 443 MSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVV-PDEVTFN 501

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T++ G C++  V++AK+L  +MK++ +KP+ ++Y ++I G+    D  +A  +F EM+  
Sbjct: 502 TLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL 561

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           G  P ++T+N ++    K G+ D A  LL  M   G+ PD  TY
Sbjct: 562 GFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 22/212 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+  +  P  V ++  ++    K          FK+    G+ PD+   + L
Sbjct: 410 KALSLFDEMVEKNIRPT-VETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  C  G +   F +L  +  +   PD VTF +L+                     +  
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD I+YNT+I G  K+G +  A E+F +M      P ++TY ++I+G+    + + A+ 
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           L  EM  +G+ P+  T+  +++ +  N  + E
Sbjct: 589 LLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 6/187 (3%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAITYNT 125
           DL T  I +    ++      F +L  IL +  TP V+ F  L     ++     + ++ 
Sbjct: 95  DLNTRCITLCILYRLPSPKPSFHILQPILHTT-TPTVI-FNELSLARNRLNVKTTLVFDL 152

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++   C+    D+A E    MK+  + P   T  S++      N    A  ++ EM+   
Sbjct: 153 LLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMN 212

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++ ++VTFN++++ LC+ GK  +A   +  M  +GV+P+  TYNT+++G+CL G+   A 
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAAS 272

Query: 246 ELFVSME 252
           ++F +M+
Sbjct: 273 KIFKTMK 279


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 15/237 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P++A+ +F   L      P +  +N ++  L +       L L   +   G  PD++T++
Sbjct: 451 PDQAMAVFKDGLG-KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYN 509

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ++IN  CKMG +S    ++G         D +T     K C PD  TYNT++DG C+Q  
Sbjct: 510 LIINGLCKMGCLSDANHLIG---------DAIT-----KGCIPDIFTYNTLVDGYCRQLK 555

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A EL  +M  + + P+V+TY +++ G C      E   +F  M ++G  PN++T+N 
Sbjct: 556 LDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNT 615

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           I++ LC + K++EA  LL  M   G+ PD  ++ TL+ GFC  G ++ A  LF  ME
Sbjct: 616 IIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGME 672



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L +            ++ + G  P+ +T++ +I+ +CK G V     +
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRI 422

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD  T+ SL+                     K  +P  I YNT+I GLC+
Sbjct: 423 LKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQ 482

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A +L  +M +K  KP++ TY  +I G C     ++A  L  + + +G  P++ T
Sbjct: 483 QGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFT 542

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  C+  K+D A  L++ M   G+ PD  TYNTLL+G C T +     E+F +M 
Sbjct: 543 YNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMT 602

Query: 253 SMGC 256
             GC
Sbjct: 603 EKGC 606



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+  F+ M  +    P V S+N ++  L +  +++    ++ R+    +  D+YT++I
Sbjct: 172 QEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTI 230

Query: 77  LINCFCKMGRVSHGFVVLGRI-LRSCFTPDVV-------------------TFTSLIKVC 116
            I  FC+ GR      +L  + +  CF+  V                     F  +++ C
Sbjct: 231 RIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC 290

Query: 117 K-PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  T+N ++  LCK+GFV +++ LF K+  + V PN+ T+   I+G C     + A 
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAV 350

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   +  +G++P+VVT+N ++  LC+  ++ EA   L  M+  G  P+ FTYN+++DG+
Sbjct: 351 RLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGY 410

Query: 236 CLTGRVNHAKELF 248
           C  G V  A  + 
Sbjct: 411 CKKGMVVDANRIL 423



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 21/211 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           G  PD +T+  L+N FC+ G       V    L     P ++ + +LIK           
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                      CKPD  TYN II+GLCK G +  A  L      K   P++ TY +++ G
Sbjct: 490 LQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +C     + A  L   M  QG+ P+V+T+N +++ LCK  K +E   +   M + G  P+
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             TYNT+++  C + +VN A +L   M+S G
Sbjct: 610 IITYNTIIESLCNSKKVNEAVDLLGEMKSKG 640



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +FD ML     P  V++FN ++  L K         LF ++   G+ P+L+T +I
Sbjct: 277 DRARELFDEMLECCLCPD-VTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNI 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I   CK G +     +LG + R    PDVVT              YNT+I GLC++  V
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVT--------------YNTVICGLCRKSRV 381

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+E   KM +   +PN  TY S+I G+C      +A R+  + + +G +P+  T+  +
Sbjct: 382 VEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSL 441

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  C++G  D+A ++    +  G+RP    YNTL+ G C  G +  A +L   M   GC
Sbjct: 442 VNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGC 501



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 24/223 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L K    + V+ +FK +   G  P++ T++ +I   C   +V+    +
Sbjct: 573 PDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDL 632

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPDAI------------------TYNTIIDGLC 131
           LG +     TPDVV+F +LI    KV   D                    TYN II    
Sbjct: 633 LGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFS 692

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +Q  +  A  LF +MK     P+  TY  +I GFC   + N+  +  +E +++G  P++ 
Sbjct: 693 EQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLT 752

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           TF  +++ LC   K+ EA  ++ LM+Q  + PD  T NT+ + 
Sbjct: 753 TFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD--TVNTIFEA 793



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 8/136 (5%)

Query: 124 NTIIDGL--------CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           NT+++G+         ++G + +A + F +M   N  P+V +Y +++        +N+A 
Sbjct: 151 NTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAH 210

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++++ M D+ V+ +V T+ + +   C+ G+   A  LL  M   G   +A  Y T++ GF
Sbjct: 211 KVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGF 270

Query: 236 CLTGRVNHAKELFVSM 251
              G  + A+ELF  M
Sbjct: 271 YEFGDNDRARELFDEM 286



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +F  M + +      +++NI++   ++  +    L LF  +   G  PD YT+ +LI
Sbjct: 664 AYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLI 723

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           + FCK G V+ G+  L   +   F P + TF                +++ LC +  V +
Sbjct: 724 DGFCKTGNVNQGYKFLLENIEKGFIPSLTTF--------------GRVLNCLCVEHKVQE 769

Query: 139 AKELFLKMKDKNVKPNVV 156
           A  +   M  K++ P+ V
Sbjct: 770 AVGIIHLMVQKDIVPDTV 787



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEA 174
           K    TY +++  L   G  ++ + L  +M+  N+   ++   Y   +R +       EA
Sbjct: 116 KHTLFTYKSMLQKLGFHGKFNEMENLLSEMRS-NLDNTLLEGVYVEAMRFYGRKGKIQEA 174

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F  M      P+V ++N IM+ L + G  ++A  +   M    V  D +TY   +  
Sbjct: 175 VDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKS 234

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC TGR   A  L  +M  +GC
Sbjct: 235 FCRTGRPYAALRLLRNMPVLGC 256


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 22/257 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ IF  M R H   P V ++  ++  L KN        +F  L   G  PD  T+ 
Sbjct: 294 PKEAIGIFKKMCR-HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYG 352

Query: 76  ILINCFCKMGRVSH---------------GFVVLGRILRSCFTPDVVTFTSLI------K 114
            L++ +   G +                 G  +   I+ +    + V    L+      +
Sbjct: 353 TLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ 412

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD + Y T++D LC  G VD A   F  +K + + PN+V +T++I G C  + W++ 
Sbjct: 413 GLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKV 472

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L  EM+D+G+  + + FN IM  LCK G++ EA +L DLM++ G+ P+  TYNTL+DG
Sbjct: 473 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 532

Query: 235 FCLTGRVNHAKELFVSM 251
           +CL G+++ A +L   M
Sbjct: 533 YCLDGKMDEAMKLLGVM 549



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN+++G  AK+   D  L +F  +   GL PD+  +  +++  C  GRV         + 
Sbjct: 386 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 445

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P++V FT              T+I GLC     DK +EL  +M D+ +  + + +
Sbjct: 446 SEGLAPNIVVFT--------------TLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFF 491

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++   C      EAK LF  M+  G++PN  T+N ++D  C +GKMDEA  LL +M+ 
Sbjct: 492 NAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 551

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +GV+P   TYNT+++G+   GR+     L   M+  G
Sbjct: 552 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKG 588



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 28/253 (11%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR  P+P   SS   +     +    D VL   +R+   G  PDL++++IL+   C   +
Sbjct: 130 LRHEPNPLQSSSQGPLCTAGGRAMRMDIVL---RRMPELGCKPDLFSYTILLKGLCD-DK 185

Query: 87  VSHGFVVLGRIL---RSCFTPDVVTFTSLI---------------------KVCKPDAIT 122
            S   + L  I+   +     DVV +T++I                     +   PD +T
Sbjct: 186 TSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVT 245

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y++II  L K   +DKA ++F +M    V P+ + YTS++ G+C +    EA  +F +M 
Sbjct: 246 YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC 305

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             GV+P+VVT+  +MD LCKNGK  EA  + D +++ G +PD+ TY TLL G+   G + 
Sbjct: 306 RHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALV 365

Query: 243 HAKELFVSMESMG 255
              +L   M   G
Sbjct: 366 EMHDLLDLMMKKG 378



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD ML   PSP  V +++ ++  L+K +  D    +F R+   G+ PD   ++ 
Sbjct: 225 DKAYSLFDAMLDRGPSPD-VVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 283

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +C  G+      +  ++ R    PDVVT              Y  ++D LCK G  
Sbjct: 284 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVT--------------YTALMDYLCKNGKS 329

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+++F  +  +  KP+  TY +++ G+       E   L   MM +G+Q     FN+I
Sbjct: 330 TEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 389

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M    K+ K+DEA  +   M Q G+ PD   Y T+LD  C  GRV+ A   F S++S G
Sbjct: 390 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEG 448



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 136/318 (42%), Gaps = 67/318 (21%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           +R K  G    T   P +A  +FD +L+       +   N  L  +A+       +SLF 
Sbjct: 30  KRTKQGGRQRATE--PGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 61  RL---NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF--------------- 102
           R+    +T   P++ T+ I+I C  ++GR+   F  +GR++ +                 
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPL 145

Query: 103 ----------------------TPDVVTFTSLIK-----------------------VCK 117
                                  PD+ ++T L+K                        C 
Sbjct: 146 CTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCP 205

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D + Y T+I+GL ++G +DKA  LF  M D+   P+VVTY+S+I         ++A ++
Sbjct: 206 LDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQV 265

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M+  GV P+ + +  ++   C +GK  EA  +   M +HGV PD  TY  L+D  C 
Sbjct: 266 FTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCK 325

Query: 238 TGRVNHAKELFVSMESMG 255
            G+   A+++F S+   G
Sbjct: 326 NGKSTEARKIFDSLVKRG 343



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M R     P + ++  +L  L      D  LS F  L S GL P++   + 
Sbjct: 400 DEALLVFSNM-RQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTT 458

Query: 77  LINCFC------KMGRVSHGFVVLGRILRSCFTPDVVT--------------FTSLIKV- 115
           LI+  C      K+  ++   +  G  L + F   ++               F  ++++ 
Sbjct: 459 LIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIG 518

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYNT+IDG C  G +D+A +L   M    VKP+ VTY ++I G+       +  
Sbjct: 519 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 578

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            L  EM  +GV P +VT+ +++  L + G+   A  L   MI+
Sbjct: 579 TLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 621


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 22/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS +N ++  L K + Y   + L   +   G+ P++ ++S LIN     G++   F +
Sbjct: 243 PVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSL 302

Query: 94  LGRILRSCFTPDVVTFTSLIKVC----------------------KPDAITYNTIIDGLC 131
           L ++L+    P++ T +SL+K C                      +P+ + YNT++ G C
Sbjct: 303 LAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFC 362

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G +DKA  +FL M++    PN+ TY S+I GF        A  ++ +M+  G  PNVV
Sbjct: 363 SHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVV 422

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +++ LC++ K  EA SL+++M +    P   T+N  + G C  GR++ A+++F  M
Sbjct: 423 VYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM 482

Query: 252 ES 253
           E 
Sbjct: 483 EQ 484



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 126/268 (47%), Gaps = 22/268 (8%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
           L S  +G     T  +AL +++ M+R     P V ++N ++     + + D  +S+F  +
Sbjct: 318 LSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHM 377

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------- 115
              G  P++ T+  LIN F K G +     +  ++L S   P+VV +TS+++        
Sbjct: 378 EEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKF 437

Query: 116 --------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTS 160
                         C P   T+N  I GLC  G +D A+++F +M+ +    PN+VTY  
Sbjct: 438 KEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNE 497

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           ++ G   AN   EA  L  E+  +GV+ +  T+N ++   C  G    A  L+  M+ +G
Sbjct: 498 LLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNG 557

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             PD  T N ++  +C  G+   A ++ 
Sbjct: 558 KSPDEITMNMIILAYCKQGKAERAVQML 585



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 20/224 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N++L  L KN   D    L   +++ G  P+  +++ +I+  C++G V  G   
Sbjct: 178 PNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEG--- 234

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R L   F P V                YN +I+GLCK+       EL  +M +K + P
Sbjct: 235 --RQLAERFEPVVSV--------------YNALINGLCKERDYKGGVELMSEMVEKGISP 278

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV++Y+++I     +     A  L  +M+ +G  PN+ T + ++      G   +A  + 
Sbjct: 279 NVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMW 338

Query: 214 DLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + MI+  G++P+   YNTL+ GFC  G ++ A  +F+ ME +GC
Sbjct: 339 NQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGC 382



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 26/257 (10%)

Query: 19  ALCIFDYMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           A  +   ML+   HP+   +SS  ++ GC  +   +D +    + +   GL P++  ++ 
Sbjct: 299 AFSLLAQMLKRGCHPNIHTLSS--LVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNT 356

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+  FC  G +     V   +     +P++ T+ SLI                       
Sbjct: 357 LVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSG 416

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ + Y ++++ LC+     +A+ L   M  +N  P+V T+ + I+G C A   + A+
Sbjct: 417 CCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAE 476

Query: 176 RLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++F +M  Q    PN+VT+N ++D L K  +++EA  L   +   GV     TYNTLL G
Sbjct: 477 KVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHG 536

Query: 235 FCLTGRVNHAKELFVSM 251
            C  G    A +L   M
Sbjct: 537 SCNAGLPGIALQLVGKM 553



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 15/199 (7%)

Query: 55  VLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
            L  FK + ++ LF     T  ++I      G+V     +L ++    F      F S+I
Sbjct: 58  ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 117

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
            V +              + G  ++A E+F ++K+    P+V  Y  V+      N    
Sbjct: 118 SVYR--------------QVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 163

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              ++ +M   G +PNV T+NV++  LCKN K+D A  LL  M   G  P+A +Y T++ 
Sbjct: 164 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVIS 223

Query: 234 GFCLTGRVNHAKELFVSME 252
             C  G V   ++L    E
Sbjct: 224 SMCEVGMVKEGRQLAERFE 242



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 3/168 (1%)

Query: 92  VVLGRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
            VL R+ +    P  + F   I    + K   +T+  +I  L   G VD  + L  +MK 
Sbjct: 44  AVLKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKL 103

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           +    +   + SVI  +        A  +F  + + G  P+V  +N ++D L    ++  
Sbjct: 104 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 163

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              +   M + G  P+ FTYN LL   C   +V+ AK+L V M + GC
Sbjct: 164 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGC 211



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 16/169 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  M + +  PP + ++N +L  LAK    +    L + +   G+     T++ L++  
Sbjct: 478 VFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGS 537

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C  G       ++G+++              +    PD IT N II   CKQG  ++A +
Sbjct: 538 CNAGLPGIALQLVGKMM--------------VNGKSPDEITMNMIILAYCKQGKAERAVQ 583

Query: 142 LF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           +   +    +  +P+V++YT+VI G C +N   +   LF  M+ + + P
Sbjct: 584 MLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP 632


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 21/241 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN---STGLFPDLYTH 74
           EA  + D +    PS     S+N +L  L +  H+D   +L + ++        P+  ++
Sbjct: 63  EATSLLDAL----PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSY 118

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           ++L+   C   R++   V L R +RS                + D +TY T+I GLC   
Sbjct: 119 TVLMRALCA-DRLADQAVGLLRSMRSAGV-------------RADVVTYGTLIRGLCDAA 164

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VDKA EL  +M +  ++PNVV Y+S+++G+C +  W +  ++F+EM ++G++P+VV + 
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D LCK GK  +A  ++D+M++ G+ P+  TYN L++  C  G V  A  +   M   
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 255 G 255
           G
Sbjct: 285 G 285



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 24/254 (9%)

Query: 27  LRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           L  HP+  P   S+ +++  L  ++  D  + L + + S G+  D+ T+  LI   C   
Sbjct: 105 LEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
            V     ++G +  S   P+VV ++SL++  CK                    PD + Y 
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +ID LCK G   KA  +   M  + ++PNVVTY  +I   C      EA  +  +M ++
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVN 242
           GV P+VVT+N ++  L    +MDEA  LL+ M++    V+P+  T+N+++ G C  GR+ 
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMR 344

Query: 243 HAKELFVSMESMGC 256
            A ++   ME  GC
Sbjct: 345 QAFQVRAMMEETGC 358



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 131/245 (53%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ +L    K+  ++ V  +F  ++  G+ PD+  ++ LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  ++R    P+VVT+  LI  +CK                    PD +TYNT+I GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 133 QGFVDKAKELFLKM-KDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
              +D+A  L  +M + KN VKPNVVT+ SVI+G C      +A ++   M + G   N+
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+N+++  L +  K+ +A  L+D M   G+ PD+FTY+ L+ GFC   +V+ A++L  +
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 251 MESMG 255
           M   G
Sbjct: 423 MRDRG 427



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 15/214 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++G L +       + L   + S GL PD +T+SILI  FCKM +V     +L  +
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                 P++  +  L+                +C+QG +++A+ LF +M D N   +VV 
Sbjct: 424 RDRGIEPELFHYIPLLV--------------AMCEQGMMERARNLFNEM-DNNFPLDVVA 468

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C A D   AK L   ++D+G+ P+ VT++++++   K+G M+ A+ +L  M 
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G  PD   +++L+ G+   G +N   EL   M
Sbjct: 529 ASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 26/231 (11%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           + K K    V+ +  R    GL P++ T+++LINC CK G V     VL ++      PD
Sbjct: 233 VGKAKKAHGVMDMMVR---RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 106 VVTFTSLIK-----------------------VCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           VVT+ +LIK                       + KP+ +T+N++I GLC  G + +A ++
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              M++     N+VTY  +I G    +   +A  L  EM   G++P+  T+++++   CK
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCK 409

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D A  LL  M   G+ P+ F Y  LL   C  G +  A+ LF  M++
Sbjct: 410 MWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN 460



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 60/296 (20%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  + D M+R     P V ++N+++ C+ K       + + K+++  G+ PD+ T++ L
Sbjct: 238 KAHGVMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 78  INCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTS------------------------ 111
           I     +  +     +L  ++R  +   P+VVTF S                        
Sbjct: 297 IKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356

Query: 112 ---------------LIKVCK-----------------PDAITYNTIIDGLCKQGFVDKA 139
                          L++V K                 PD+ TY+ +I G CK   VD+A
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRA 416

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           ++L   M+D+ ++P +  Y  ++   C       A+ LF EM D     +VV ++ ++  
Sbjct: 417 EDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHG 475

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            CK G +  A  LL  ++  G+ PDA TY+ +++ F  +G +  A  +   M + G
Sbjct: 476 ACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG 531



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  V +++ M+    K     T   L K +   GL PD  T+SI+IN F K G +     
Sbjct: 463 PLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANG 522

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           VL ++  S F PDV  F SLI+              G   +G ++K  EL  +M  KN+
Sbjct: 523 VLKQMTASGFLPDVAVFDSLIQ--------------GYSTKGEINKVLELIREMITKNI 567


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  +L  L K+   +   ++F ++   G  PD+  ++ L++   K G++SH  ++
Sbjct: 736 PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              + +    PDVVT++SLI                     K C P+   Y+++ID   K
Sbjct: 796 FRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGK 855

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD+A ELF +M+ +   PN+VTY +++ G   A   N A++L  EM   G  P++VT
Sbjct: 856 KGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVT 915

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D + K G +DEA S    M + G+ PD  T+ +L++      ++  A ELF SME
Sbjct: 916 YNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME 975

Query: 253 SMG 255
             G
Sbjct: 976 EEG 978



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL IF+ M +     P  + +N +L  L K   Y + + +F +L    + PD  T  I +
Sbjct: 236 ALEIFNQM-KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
           + F + GR+      +  +++S   P V TFT LI                       C 
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY T+++GL K G +++A E+F++MK+ N  P+ + Y ++I G   A + + A  L
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM D+G+ PN+ T+N+++  L K G+  EA  L   + + G  PD FTYNTL+D    
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474

Query: 238 TGRVNHAKELFVSMESMG 255
            G+++    +   M   G
Sbjct: 475 GGQMDKVLAIIKEMVEKG 492



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +   M +     P V +++ ++    K    +  LSLF  +   G   D+ T+S+
Sbjct: 580 DEAVSLLREMEK-QGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSL 638

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF----TSLIKVCK--------------- 117
           +INC CK   V     V GR+      P +  +    +SL+K  K               
Sbjct: 639 VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESS 698

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   YN +++GL K   VD+A +L   MK++N+ P++ TYTS++ G   +    EA 
Sbjct: 699 LVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAF 758

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M ++G +P+VV +  +MD L K GK+  A  +   M +    PD  TY++L+D  
Sbjct: 759 NMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSL 818

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              GRV  A   F +  S GC
Sbjct: 819 GKEGRVEEAYYFFENSISKGC 839



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E+L +FD M+R       VS++++++ CL K+   D  L +F R+   G+ P L  +  
Sbjct: 615 EESLSLFDEMVR-KGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT 673

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK--------- 117
           L++   K  ++     +   +  S   PD   +  ++          + CK         
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY +++DGL K G +++A  +F KM ++  +P+VV YTS++         + A 
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M  +   P+VVT++ ++D L K G+++EA    +  I  G  P+   Y++L+D F
Sbjct: 794 IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G V+ A ELF  M+   C
Sbjct: 854 GKKGMVDRALELFEEMQRRQC 874



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  M +     P + ++  +L  L K++  D  L +F  L  + L PD + ++I
Sbjct: 650 DQALDVFGRM-KEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++N   K  RV     ++  +      PD+ T+TSL+                     + 
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD + Y +++D L K G +  A  +F  M  K   P+VVTY+S+I          EA 
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAY 828

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F   + +G  PNV  ++ ++D   K G +D A  L + M +    P+  TYN LL G 
Sbjct: 829 YFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGL 888

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              GR+N A++L   ME +GC
Sbjct: 889 AKAGRLNVAEKLLEEMEKVGC 909



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 122/261 (46%), Gaps = 22/261 (8%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             EA  +F  M       P V ++  ++  L K       L +F+ +      PD+ T+S 
Sbjct: 755  EEAFNMFTKMTE-EGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSS 813

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            LI+   K GRV   +      +    TP+V  ++SLI                     + 
Sbjct: 814  LIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873

Query: 116  CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            C P+ +TYN ++ GL K G ++ A++L  +M+     P++VTY  +I G       +EA+
Sbjct: 874  CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAE 933

Query: 176  RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
              F  M ++G+ P+V+TF  +++ L K  K+ EA  L D M + G  P   TYN L+D  
Sbjct: 934  SYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDIL 993

Query: 236  CLTGRVNHAKELFVSMESMGC 256
               G+V+ A  +F  M+  GC
Sbjct: 994  GRAGKVHEAAMIFHEMKVKGC 1014



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 123/251 (49%), Gaps = 22/251 (8%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            + AL IF  M +     P V +++ ++  L K    +     F+   S G  P++  +S 
Sbjct: 790  SHALIIFRAMAKKR-CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KV- 115
            LI+ F K G V     +   + R    P++VT+ +L+                    KV 
Sbjct: 849  LIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908

Query: 116  CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            C PD +TYN +IDG+ K G VD+A+  F +MK+K + P+V+T+TS+I      +   EA 
Sbjct: 909  CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEAC 968

Query: 176  RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             LF  M ++G  P+VVT+NV++D L + GK+ EA+ +   M   G  PD  T   +    
Sbjct: 969  ELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRIL 1028

Query: 236  CLTGRVNHAKE 246
             +  +  HA E
Sbjct: 1029 SVREQQFHALE 1039



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 19/240 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NIM+  L K         LF  L   G  PD++T++ LI+   K G++     +
Sbjct: 425 PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAI 484

Query: 94  LGRILR---SCF---------------TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +  ++     C                    V + SL        ITYNT++      G 
Sbjct: 485 IKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSL-GFKSLGEITYNTLMSAFIHNGH 543

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD+A +L   MK     P VVTYT+++ G   A   +EA  L  EM  QG +P+VVT++ 
Sbjct: 544 VDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSS 603

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +M    K  + +E+ SL D M++ G   D  TY+ +++  C +  V+ A ++F  M+  G
Sbjct: 604 LMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEG 663



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 111/249 (44%), Gaps = 37/249 (14%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M   + SP  ++ +N ++  L K    D    LFK +   GL P+L T++I
Sbjct: 374 EEACEVFVEMKENNCSPDAIA-YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNI 432

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+   K GR    + +   +      PDV T              YNT+ID L K G +
Sbjct: 433 MISVLGKAGRQPEAWQLFHDLKEQGAVPDVFT--------------YNTLIDVLGKGGQM 478

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFC-YANDWNEAKRLFIEMMDQGVQ-PNV---- 190
           DK   +  +M +K              G C  + D N      IE  D+ V+ P++    
Sbjct: 479 DKVLAIIKEMVEKG-------------GECIISRDSNAGHEGTIEGADRTVEYPSLGFKS 525

Query: 191 ---VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
              +T+N +M     NG +DEA  LL++M +H   P   TY TL+DG    GR++ A  L
Sbjct: 526 LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSL 585

Query: 248 FVSMESMGC 256
              ME  GC
Sbjct: 586 LREMEKQGC 594



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 112/253 (44%), Gaps = 49/253 (19%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++     N H D  + L + +      P + T++ L++   K GR+     +L  +
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNT-------------------------------- 125
            +              + C+P  +TY++                                
Sbjct: 590 EK--------------QGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVST 635

Query: 126 ---IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
              +I+ LCK   VD+A ++F +MK++ ++P +  Y +++         + A ++F E+ 
Sbjct: 636 YSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQ 695

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           +  + P+   +N++++ L K+ ++DEA  L+D M    + PD FTY +LLDG   +GR+ 
Sbjct: 696 ESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLE 755

Query: 243 HAKELFVSMESMG 255
            A  +F  M   G
Sbjct: 756 EAFNMFTKMTEEG 768



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A C F +  +       V ++ +M+  LA  +  D V+ +   +   G    ++  + L+
Sbjct: 165 AKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLL 224

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             F     VS    +  ++    F             C P    YN +++ L K GF   
Sbjct: 225 RTFGSTNNVSGALEIFNQM--KSFG------------CNPSTNMYNFVLELLVKGGFYHS 270

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F K+    ++P+  T+   +  F  +   + A     EM+  G+ P V TF V++D
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLID 330

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L K+G +DEA    + M      P+  TY TL++G    GR+  A E+FV M+   C
Sbjct: 331 ALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNC 388


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 23/246 (9%)

Query: 17  NEALCIFDYMLRMHPS---------PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +EAL +F YM+               P V +FN ++  L          +L  ++   GL
Sbjct: 193 SEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGL 252

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
             D+ T+  ++N  CKMG       +L ++  +                KPD + Y+ II
Sbjct: 253 HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI--------------KPDVVIYSAII 298

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D LCK G    A+ LF +M +K + PNV TY  +I GFC    W++A+RL  +M+++ + 
Sbjct: 299 DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREIN 358

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+V+TFN ++    K GK+ EA  L D M+   + PD  TYN+++ GFC   R + AK +
Sbjct: 359 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 418

Query: 248 FVSMES 253
           F  M S
Sbjct: 419 FDLMAS 424



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 42/271 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+  FDYM+R  P    V   N ++G   +    D  +SL++++    +  ++Y+ +I
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCKQGF 135
           LI CFC   ++S      G++ +  F PDVVTF +L+  +C  D I+     + L   G+
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRIS-----EALALFGY 201

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---------- 185
           + +   LF +M +  + P V+T+ ++I G C      EA  L  +M+ +G          
Sbjct: 202 MVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 261

Query: 186 -------------------------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
                                    ++P+VV ++ I+D LCK+G   +A  L   M++ G
Sbjct: 262 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 321

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + P+ FTYN ++DGFC  GR + A+ L   M
Sbjct: 322 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 352



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 53/289 (18%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M   H  P  V  ++ ++  L K+ H+     LF  +   G+ P+++T++ +I
Sbjct: 275 ALNLLSKMEETHIKPDVVI-YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 333

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVC--------- 116
           + FC  GR S    +L  ++     PDV+TF +LI             K+C         
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393

Query: 117 ------------------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                                          PD +T+NTIID  C+   VD+  +L  ++
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 453

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N  TY ++I GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K+
Sbjct: 454 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 513

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA  L +++    +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 514 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 562



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 30/260 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E LC  D ML     P  V+ +N M+    K+  +D    +F  + S    PD+ T + +
Sbjct: 381 EKLC--DEMLHRCIFPDTVT-YNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTI 433

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------V 115
           I+ +C+  RV  G  +L  I R     +  T+ +LI                       V
Sbjct: 434 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 493

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD IT N ++ G C+   +++A ELF  ++   +  + V Y  +I G C  +  +EA 
Sbjct: 494 C-PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 552

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +   GV+P+V T+NV++   C    + +A+ L   M  +G  PD  TYNTL+ G 
Sbjct: 553 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 612

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G ++ + EL   M S G
Sbjct: 613 LKAGEIDKSIELISEMRSNG 632



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD M     + P V +FN ++    + K  D  + L + ++  GL  +  T++ 
Sbjct: 413 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVCK 117
           LI+ FC++  ++    +   ++     PD +T                      +I++ K
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 527

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + YN II G+CK   VD+A +LF  +    V+P+V TY  +I GFC  +  ++A 
Sbjct: 528 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 587

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G +P+  T+N ++    K G++D++  L+  M  +G   DAFT   + D
Sbjct: 588 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A + F  M         V    VI  F   N  + A  L+ +M  + +  N+ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+  + S    + + G +PD  T+NTLL G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  ML M  +PP V ++   +  L K  +      + + + + GL P++YTH+ LIN  
Sbjct: 242 LFRRMLEM-GTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK+G     F +  ++++S                KP+  TY  +I G CK+G + +A+ 
Sbjct: 301 CKIGWTERAFRLFLKLIKS-------------SSYKPNVHTYTVMIGGYCKEGKLARAEM 347

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +M ++ + PN  TYT++I G C    +N A  L  +M  +G QPN+ T+N ++D LC
Sbjct: 348 LLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLC 407

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K GK+ EA  +L +    G++ D  TY  ++   C  G + +A +LF  M   GC
Sbjct: 408 KKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGC 462



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 21/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A  +F  +++     P V ++ +M+G   K         L  R+   GL P+  T++ 
Sbjct: 307 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 366

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           LI+  CK G  +  F ++ ++ R  F P++ T+ +LI  +CK                  
Sbjct: 367 LISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQG 426

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D +TY  +I   CKQG +  A +LF +M +    P++ TYT++I  +C      E++
Sbjct: 427 LQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQ 486

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF + +   + P   T+  ++   CK GK   A  + + M+Q+G + D+ TY  L+ G 
Sbjct: 487 KLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGL 546

Query: 236 CLTGRVNHAKELFVSM 251
           C   R+  A+ L+  M
Sbjct: 547 CKESRLEEARALYEGM 562



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V +   ++  L K    +    LF K + S+   P+++T++++I  +CK G+++   +
Sbjct: 288 PNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEM 347

Query: 93  VLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLC 131
           +LGR++     P+  T+T+LI   CK                    P+  TYN +IDGLC
Sbjct: 348 LLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLC 407

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G + +A ++     ++ ++ + VTYT +I   C       A  LF  M + G  P++ 
Sbjct: 408 KKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIH 467

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++   C+  +M+E+  L D  +   + P   TY +++ G+C  G+   A  +F  M
Sbjct: 468 TYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERM 527

Query: 252 ESMGC 256
              GC
Sbjct: 528 VQNGC 532



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 21/224 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++    K   ++    L  ++   G  P++YT++ LI+  CK G++   + V
Sbjct: 359 PNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKV 418

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L          D VT+T +I                       C PD  TY T+I   C+
Sbjct: 419 LRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQ 478

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  ++++++LF K     + P   TYTS+I G+C       A R+F  M+  G Q + +T
Sbjct: 479 QRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSIT 538

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  ++  LCK  +++EA +L + M+   + P   T  TL   +C
Sbjct: 539 YGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYC 582



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)

Query: 21  CIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           C F+ M +M      P + ++N ++  L K         + +  N+ GL  D  T++++I
Sbjct: 379 CAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMI 438

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK-------------------- 117
              CK G +++   +  R+  +   PD+ T+T+LI + C+                    
Sbjct: 439 TEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELV 498

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   TY ++I G CK G    A  +F +M     + + +TY ++I G C  +   EA+ L
Sbjct: 499 PTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARAL 558

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           +  M+D+ + P  VT   +  E C+  K   A S+LD + +   R    T N L+     
Sbjct: 559 YEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDK---RRKNHTVNVLVRKLSA 615

Query: 238 TGRVNHA 244
            G V  A
Sbjct: 616 IGHVEDA 622



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 18/242 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
           P  A  +F+  +R H  P  V + N +L        +     +F  +    GL PD  + 
Sbjct: 131 PEAADMVFE--MRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGGLLPDARSF 188

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
             LI   C+ GR+     +L  +    F  D  T T +++V               C++G
Sbjct: 189 RALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRV--------------FCQKG 234

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
                 ELF +M +    PNVV YT+ I G C      +A  +  EM+ +G++PNV T  
Sbjct: 235 RFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHT 294

Query: 195 VIMDELCKNGKMDEASSL-LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +++ LCK G  + A  L L L+     +P+  TY  ++ G+C  G++  A+ L   M  
Sbjct: 295 SLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE 354

Query: 254 MG 255
            G
Sbjct: 355 QG 356


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K    +  + L   +   G+ P++ ++S +IN  C  G V   F +
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 94  LGRI-LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLC 131
             ++ LR C   ++ TFT LIK C                     +P+ + YNT+I GLC
Sbjct: 302 FAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G +++A ++  +M+     PNV TY+ +I GF  + D   A   +  M+  G +PNVV
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D LCKN   D+A+SL++ M   G  P+  T+NT + G C  GRV  A +L   M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 252 ESMGC 256
           +  GC
Sbjct: 481 QGHGC 485



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 22/258 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M++     P V ++N ++  L  N   +  L +  ++  +G  P++ T+SIL
Sbjct: 332 EALDLWKLMIQ-DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ F K G +        R++     P+VVT+T ++ V                     C
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ IT+NT I GLC  G V+ A +L  +M+     PN+ TY  ++      N + EA  
Sbjct: 451 TPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFG 510

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF E+  + +QPN+VT+N ++    + G M EA  L    +  G  PD+ TYNT++  +C
Sbjct: 511 LFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYC 570

Query: 237 LTGRVNHAKELFVSMESM 254
             G+V  A +L   + SM
Sbjct: 571 KQGKVKIAAQLVERVSSM 588



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 17/258 (6%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +  +AL +F Y +      P V  +N +L  L     +  +  L+  +   GL P+++T+
Sbjct: 124 SAEQALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------P 118
           +IL+   CK  RV     +   +      PD VT+T+++  +CK               P
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP 242

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
               YN +IDG+CK+G ++ A +L  +M D  V PNVV+Y+ +I   C + +   A  LF
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M  +G   N+ TF  ++      GK+ EA  L  LMIQ G  P+   YNTL+ G C  
Sbjct: 303 AQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSN 362

Query: 239 GRVNHAKELFVSMESMGC 256
           G +  A ++   M+  GC
Sbjct: 363 GSLEEALQVCDQMQRSGC 380



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++ H   P ++++N +L  L +   Y+    LF+ + +  L P+L T++ ++  F + G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     + G+              +L++   PD+ITYNT+I   CKQG V  A +L  ++
Sbjct: 540 MGEALQLFGK--------------ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 147 KD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
              K   P+++TYTS+I G C   +  EA     + ++QG+ PN  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-----YNTIIDGLCKQGFVDKAKELFLKM 146
           V++ R+ R C   D+V +  +++  K D I      +  II+G  + G  ++A ++F ++
Sbjct: 79  VMIERLGREC-EMDMVQY--ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +   KP V  Y  ++      N +     L+  M   G+ PNV T+N+++  LCKN ++
Sbjct: 136 GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRV 195

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           D A  L   M   G  PDA TY T++   C  G+++ A+EL
Sbjct: 196 DAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A TY  +I+ L ++  +D  + +  +MK   +      +  +I G+       +A ++F 
Sbjct: 74  ASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFY 133

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            + + G +P V  +N ++D L    K    + L   M + G+ P+ FTYN LL   C   
Sbjct: 134 RIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND 193

Query: 240 RVNHAKELFVSMESMGC 256
           RV+ A +LFV M + GC
Sbjct: 194 RVDAAHKLFVEMSNKGC 210


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K    +  + L   +   G+ P++ ++S +IN  C  G V   F +
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 94  LGRI-LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLC 131
             ++ LR C   ++ TFT LIK C                     +P+ + YNT+I GLC
Sbjct: 302 FAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G +++A ++  +M+     PNV TY+ +I GF  + D   A   +  M+  G +PNVV
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D LCKN   D+A+SL++ M   G  P+  T+NT + G C  GRV  A +L   M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 252 ESMGC 256
           +  GC
Sbjct: 481 QGHGC 485



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 17/258 (6%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +  +AL +F Y +      P V  +N +L  L     +  +  L+  +   GL P+++T+
Sbjct: 124 SAEQALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------P 118
           +IL+   CK  RV     +   +      PD VT+T+++  +CK               P
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP 242

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
               YN +IDG+CK+G ++ A +L  +M D  V PNVV+Y+ +I   C + +   A  LF
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M  +G   N+ TF  ++      GK+ EA  L  LMIQ G  P+   YNTL+ G C  
Sbjct: 303 AQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSN 362

Query: 239 GRVNHAKELFVSMESMGC 256
           G +  A ++   M+  GC
Sbjct: 363 GSLEEALQVCDQMQRSGC 380



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 22/258 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M++     P V ++N ++  L  N   +  L +  ++  +G  P++ T+SIL
Sbjct: 332 EALDLWKLMIQ-DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ F K G +        R++     P+VVT+T ++ V                     C
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T+NT I GLC  G V+ A +L  +M+     PN+ TY  ++      N + EA  
Sbjct: 451 TPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFG 510

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF E+  + +QPN+VT+N ++    + G M EA  L    +  G  PD+ TYNT++  +C
Sbjct: 511 LFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYC 570

Query: 237 LTGRVNHAKELFVSMESM 254
             G+V  A +L   + SM
Sbjct: 571 KQGKVKIAAQLVERVSSM 588



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++ H   P ++++N +L  L +   Y+    LF+ + +  L P+L T++ ++  F + G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +     + G+              +L++   PD+ITYNT+I   CKQG V  A +L  ++
Sbjct: 540 MGEALQLFGK--------------ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 147 KD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
              K   P+++TYTS+I G C   +  EA     + ++QG+ PN  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-----YNTIIDGLCKQGFVDKAKELFLKM 146
           V++ R+ R C   D+V +  +++  K D I      +  II+G  + G  ++A ++F ++
Sbjct: 79  VMIERLGREC-EMDMVQY--ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +   KP V  Y  ++      N +     L+  M   G+ PNV T+N+++  LCKN ++
Sbjct: 136 GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRV 195

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           D A  L   M   G  PDA TY T++   C  G+++ A+EL
Sbjct: 196 DAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A TY  +I+ L ++  +D  + +  +MK   +      +  +I G+       +A ++F 
Sbjct: 74  ASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFY 133

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            + + G +P V  +N ++D L    K    + L   M + G+ P+ FTYN LL   C   
Sbjct: 134 RIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND 193

Query: 240 RVNHAKELFVSMESMGC 256
           RV+ A +LFV M + GC
Sbjct: 194 RVDAAHKLFVEMSNKGC 210


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 22/257 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ IF  M R H   P V ++  ++  L KN        +F  L   G  PD  T+ 
Sbjct: 293 PKEAIGIFKKMCR-HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYG 351

Query: 76  ILINCFCKMGRVSH---------------GFVVLGRILRSCFTPDVVTFTSLI------K 114
            L++ +   G +                 G  +   I+ +    + V    L+      +
Sbjct: 352 TLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ 411

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD + Y T++D LC  G VD A   F  +K + + PN+V +T++I G C  + W++ 
Sbjct: 412 GLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKV 471

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + L  EM+D+G+  + + FN IM  LCK G++ EA +L DLM++ G+ P+  TYNTL+DG
Sbjct: 472 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 531

Query: 235 FCLTGRVNHAKELFVSM 251
           +CL G+++ A +L   M
Sbjct: 532 YCLDGKMDEAMKLLGVM 548



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 136/307 (44%), Gaps = 61/307 (19%)

Query: 10  DITTITPNEALCIFDYMLRMHP--SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           D+   +P  A+ +F+ M R     + P ++++ I++GC  +    D   +   R+ +TGL
Sbjct: 71  DVARASPAVAISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGL 130

Query: 68  FPDLYTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK------------ 114
                  S L+   C   R S    +VL R+      PD+ ++T L+K            
Sbjct: 131 RMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQAL 190

Query: 115 -----------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI- 162
                       C  D + Y T+I+GL ++G +DKA  LF  M D+   P+VVTY+S+I 
Sbjct: 191 DLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIIS 250

Query: 163 ----------------------------------RGFCYANDWNEAKRLFIEMMDQGVQP 188
                                              G+C +    EA  +F +M   GV+P
Sbjct: 251 ALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEP 310

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +VVT+  +MD LCKNGK  EA  + D +++ G +PD+ TY TLL G+   G +    +L 
Sbjct: 311 DVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLL 370

Query: 249 VSMESMG 255
             M   G
Sbjct: 371 DLMMKKG 377



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN+++G  AK+   D  L +F  +   GL PD+  +  +++  C  GRV         + 
Sbjct: 385 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 444

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                P++V FT              T+I GLC     DK +EL  +M D+ +  + + +
Sbjct: 445 SEGLAPNIVVFT--------------TLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFF 490

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++   C      EAK LF  M+  G++PN  T+N ++D  C +GKMDEA  LL +M+ 
Sbjct: 491 NAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 550

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +GV+P   TYNT+++G+   GR+     L   M+  G
Sbjct: 551 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKG 587



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD ML   PSP  V +++ ++  L+K +  D    +F R+   G+ PD   ++ 
Sbjct: 224 DKAYSLFDAMLDRGPSPD-VVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 282

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ +C  G+      +  ++ R    PDVVT              Y  ++D LCK G  
Sbjct: 283 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVT--------------YTALMDYLCKNGKS 328

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+++F  +  +  KP+  TY +++ G+       E   L   MM +G+Q     FN+I
Sbjct: 329 TEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 388

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M    K+ K+DEA  +   M Q G+ PD   Y T+LD  C  GRV+ A   F S++S G
Sbjct: 389 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEG 447



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 66/317 (20%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           +R K  G    T   P +A  +FD +L+       +   N  L  +A+       +SLF 
Sbjct: 30  KRTKQGGRQRATE--PGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 61  RL---NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--- 114
           R+    +T   P++ T+ I+I C  ++GR+   F  +GR++ +      + F+ L+K   
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLC 145

Query: 115 -------------------VCKP------------------------------------- 118
                               CKP                                     
Sbjct: 146 DRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPL 205

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D + Y T+I+GL ++G +DKA  LF  M D+   P+VVTY+S+I         ++A ++F
Sbjct: 206 DVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF 265

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M+  GV P+ + +  ++   C +GK  EA  +   M +HGV PD  TY  L+D  C  
Sbjct: 266 TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKN 325

Query: 239 GRVNHAKELFVSMESMG 255
           G+   A+++F S+   G
Sbjct: 326 GKSTEARKIFDSLVKRG 342



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M R     P + ++  +L  L      D  LS F  L S GL P++   + 
Sbjct: 399 DEALLVFSNM-RQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTT 457

Query: 77  LINCFC------KMGRVSHGFVVLGRILRSCFTPDVVT--------------FTSLIKV- 115
           LI+  C      K+  ++   +  G  L + F   ++               F  ++++ 
Sbjct: 458 LIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIG 517

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+  TYNT+IDG C  G +D+A +L   M    VKP+ VTY ++I G+       +  
Sbjct: 518 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 577

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            L  EM  +GV P +VT+ +++  L + G+   A  L   MI+
Sbjct: 578 TLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 620


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 56/276 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++ +++   +++   +    LF  +   G+ PD+Y ++ +IN  CK G +   FV+  
Sbjct: 262 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 321

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQG 134
            +      P+  T+ +LI   CK                     + + +NT++DG CK+G
Sbjct: 322 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 381

Query: 135 FVDKA-----------------------------------KELFLKMKDKNVKPNVVTYT 159
            +D+A                                   K L L M+++ V PNVV+++
Sbjct: 382 MIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 441

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +I  +C   ++ EA+RLF  M  +G  P+VVT+N  ++  CK GKM+EA  L++ M + 
Sbjct: 442 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 501

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G+ PD +TY +L+DG   +G V+ A ELF  M  +G
Sbjct: 502 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLG 537



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++    K    D  L L   +   G   D +T +I+ + FC+  R      +L  + 
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VV+F+ LI + CK                    P  +TYN  I+  CK+G ++
Sbjct: 430 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M+++ + P+  TYTS+I G   + + + A  LF EM   G+  NVVT+ VI+
Sbjct: 490 EAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 549

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K+G+ DEA  L D M + G+ PD   Y++L+
Sbjct: 550 SGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + +L +FDY  +        S F  +L  L ++ + +  +   +++  +G+   + + + 
Sbjct: 139 DSSLEVFDYARKKGFEIDERSCFEFLLA-LKRSGNMELCVEFLRQMVDSGIEIRVCSWTA 197

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++  CK G V     ++  ++   F              KP  ITYNT+++G  +   V
Sbjct: 198 VVDGLCKKGEVVRAKALMDELVCKGF--------------KPSVITYNTLLNGYIEIKDV 243

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
               E+   M+   V  NV TYT +I  +  ++   EA++LF EM+ +G++P+V  +  I
Sbjct: 244 GGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSI 303

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G M  A  L D M +  + P+A+TY  L++G C  G +  A+ +   M+S G
Sbjct: 304 INWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 362



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF+I++    K +++     LFK +   G  P + T++  I  +CK G++   + +
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 494

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +      PD  T+TSLI              DG    G VD+A ELF +M    +  
Sbjct: 495 INEMQERGLMPDTYTYTSLI--------------DGERASGNVDRALELFNEMPQLGLNR 540

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           NVVTYT +I G       +EA +L+ EM  +G+ P+   ++ ++  L K G
Sbjct: 541 NVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L +       L +   +   G  PD++T++I+IN  CKMG +S   VV
Sbjct: 287 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +   +   + PDV TF              NT+IDG CK+  +D A +L  +M    + P
Sbjct: 347 MNDAIVKGYLPDVFTF--------------NTMIDGYCKRLKLDSALQLVERMWMYGIAP 392

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + +TY SV+ G C A    E    F EM+ +G +PN +T+N++++  CK  +++EAS ++
Sbjct: 393 DAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVI 452

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M Q G+ PD  ++NTL+ GFC  G ++ A  LF  ++  G
Sbjct: 453 VRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKG 494



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K+          +R+ + G  PD +T++ +I+ +CK   +     +
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L   +   F PD VT+ SLI                     K  KPD + YN+++ GLC+
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A ++  +M +    P++ TY  VI G C   + ++A  +  + + +G  P+V T
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  CK  K+D A  L++ M  +G+ PDA TYN++L+G C  G+     E F  M 
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421

Query: 253 SMGC 256
             GC
Sbjct: 422 LKGC 425



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 15/224 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++  L    ++D    ++ R+ S G+ PD  TH++ I  FC  GR      
Sbjct: 7   PPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPH---- 62

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V  R+LRS   P+        + C    + Y T++ GL   G    A+ LF +M  ++V 
Sbjct: 63  VALRLLRS--LPE--------RGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVF 112

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+V T+ +V+   C   D  E+  L  +++ +G+  N  T N+ +  LC+ G+++EA +L
Sbjct: 113 PDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVAL 172

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ M  + + PD  TYNTL+ G C   +V  A +    M + GC
Sbjct: 173 VESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 16/223 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN M+    K    D+ L L +R+   G+ PD  T++ ++N  CK G+       
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNE- 415

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                         TF  +I K C+P+AITYN +I+  CK   +++A  + ++M    + 
Sbjct: 416 --------------TFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLV 461

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+ +++ ++I GFC   D + A  LF ++ ++G      TFN+++        M  A  +
Sbjct: 462 PDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKI 521

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              MI  G +PD +TY  L+DG C    V+ A      M S G
Sbjct: 522 FGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKG 564



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 35/173 (20%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC--------- 166
           C P A  YN I+D L    + D+A +++++M    V P+  T+T  I+ FC         
Sbjct: 6   CPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVAL 65

Query: 167 -------------------------YANDWN-EAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                                    YA+    +A+ LF EM+ + V P+V TFN ++  L
Sbjct: 66  RLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHAL 125

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           C+ G + E+ +LL  +++ G+  + FT N  + G C  GR+  A  L  SM++
Sbjct: 126 CQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDA 178



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 36/227 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K    +    +  R++  GL PD  + + LI+ FC+ G +   +++
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++    ++    TF  LI                     K  KPD  TY  ++DG CK
Sbjct: 487 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCK 546

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV- 191
              VD+A     +M  K   P++ T+  V+      +  +EA  +   M+  GV P VV 
Sbjct: 547 AANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEVVD 606

Query: 192 -----------TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                         ++++EL K G +   +  +   +  GVR +  T
Sbjct: 607 TILSTDKKEIAAPKILVEELMKKGHISYPTYEV---LHEGVRDNKLT 650



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P    +N IMD L      D+A  +   M+  GV PDA T+   +  FC+TGR + A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 245 KELFVSMESMGC 256
             L  S+   GC
Sbjct: 65  LRLLRSLPERGC 76


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N+++ C  K    D    + K +   G  P+L T + LI+ + K+G V +  VVL 
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLK 492

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F PD++TFTSL              IDGLC    +D A   F +M +  V+PN 
Sbjct: 493 MLMEHGFMPDIITFTSL--------------IDGLCNTHQLDDAFVCFEEMAEWGVRPNA 538

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C A   N+A  L  +M   GV P+  +FN ++   C+  K+D+A  + + 
Sbjct: 539 QTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 598

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ GV PD++TYN+L+   C   RVN AKE+  + E  GC
Sbjct: 599 MVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGC 639



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           +HPS     + + ML CL+K       +   KR+++ G   D     I+++C  K   VS
Sbjct: 326 LHPS-----ACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCSLKCLEVS 380

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKV---CK------------------PDAITYNTII 127
               +L   +++   P    +  +IK    CK                     ++YN +I
Sbjct: 381 DLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVI 440

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D   K G VDKA+E+  +M+DK   PN+VT+ ++I G+    + + AK +   +M+ G  
Sbjct: 441 DCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+++TF  ++D LC   ++D+A    + M + GVRP+A TYN L+   C  G VN A +L
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDL 560

Query: 248 FVSME 252
              M+
Sbjct: 561 LNKMK 565



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 65/118 (55%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN +I    + G VD A   F +M     +P+  TY S++ G C     +EA R
Sbjct: 185 RPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVR 244

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           L  +M  +G++PNV T+ +++D  C  G+++EA  +LD M + GV P   TY TL+ G
Sbjct: 245 LVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 22/201 (10%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           LA+  H      +F ++   GL P    ++ LI    + G V   +      LR    P 
Sbjct: 168 LARYAH-----EVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAY------LRFQQMP- 215

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                     C+PD  TYN+++ G+C++G VD+A  L  +M+ + ++PNV TYT ++ GF
Sbjct: 216 -------ADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGF 268

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C A    EA R+  +M ++GV P+  T+  ++  + +  + D+A  +L   + H      
Sbjct: 269 CNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHP 328

Query: 226 FTYNTLLDGFCLTGRVNHAKE 246
              +T+L  +CL+ + + AKE
Sbjct: 329 SACHTML--YCLSKK-DMAKE 346



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++   + G    A E+F++M    ++P+   Y ++I     A   + A   F +M   
Sbjct: 158 ALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPAD 217

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P+  T+N ++  +C+ G +DEA  L+  M   G+RP+ FTY  L+DGFC  GRV  A
Sbjct: 218 GCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEA 277

Query: 245 KELFVSMESMG 255
             +   M+  G
Sbjct: 278 FRMLDKMKEKG 288



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 84/292 (28%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N ++    +    DT    F+++ + G  PD +T++ L++  C+ G V      
Sbjct: 186 PSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAV-- 243

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R++R      +          +P+  TY  ++DG C  G V++A  +  KMK+K V P
Sbjct: 244 --RLVRQMEGEGI----------RPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAP 291

Query: 154 NVVTYTSVIRG----------FCYANDW-------------------------NEAKRLF 178
           +  TY +++ G          +   +DW                          EA    
Sbjct: 292 SEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFA 351

Query: 179 IEMMDQGVQPNVVTFNVIM----------------DELCKNG------------------ 204
             M  +G   +   F ++M                D   KNG                  
Sbjct: 352 KRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNC 411

Query: 205 -KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               +A+  L  M+  G+     +YN ++D F   G V+ A+E+   M+  G
Sbjct: 412 KNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKG 463



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L    H +  + L  ++   G+ PD Y+ + LI  FC+M +V     +
Sbjct: 536 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDI 595

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE-LFLKMKDKNVK 152
              ++R    PD  T+ SLIK               LC +  V+KAKE LF + +     
Sbjct: 596 FNDMVRFGVVPDSYTYNSLIK--------------ALCDERRVNKAKEILFARERSGCST 641

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            N  +Y  ++        ++EA  L  + + +  Q +  +   I  E+
Sbjct: 642 SNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEV 689


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N+++ C  K    D    + K +   G  P+L T + LI+ + K+G V +  VVL 
Sbjct: 419 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLK 478

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F PD++TFTSL              IDGLC    +D A   F +M +  V+PN 
Sbjct: 479 MLMEHGFMPDIITFTSL--------------IDGLCNTHQLDDAFVCFEEMAEWGVRPNA 524

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C A   N+A  L  +M   GV P+  +FN ++   C+  K+D+A  + + 
Sbjct: 525 QTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 584

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ GV PD++TYN+L+   C   RVN AKE+  + E  GC
Sbjct: 585 MVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGC 625



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           +HPS     + + ML CL+K       +   KR+++ G   D     I+++C  K   VS
Sbjct: 312 LHPS-----ACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVS 366

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKV---CK------------------PDAITYNTII 127
               +L   +++   P    +  +IK    CK                     ++YN +I
Sbjct: 367 DLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVI 426

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D   K G VDKA+E+  +M+DK   PN+VT+ ++I G+    + + AK +   +M+ G  
Sbjct: 427 DCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 486

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+++TF  ++D LC   ++D+A    + M + GVRP+A TYN L+   C  G VN A +L
Sbjct: 487 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDL 546

Query: 248 FVSME 252
              M+
Sbjct: 547 LNKMK 551



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 10/177 (5%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------CKPDAITYNTIIDG 129
           L+  + ++G   +   V  ++ R    P    +T+ ++        C+PD  TYN+++ G
Sbjct: 159 LVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLRFQQMPADGCRPDHFTYNSLVHG 218

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           +C++G VD+A  L  +M+ + ++PNV TYT ++ GFC A    EA R+  +M ++GV P+
Sbjct: 219 VCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPS 278

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
             T+  ++  + +  + D+A  +L   + H         +T+L  +CL+ + + AKE
Sbjct: 279 EATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTML--YCLSKK-DMAKE 332



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 14/131 (10%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++   + G    A E+F++M    ++P+   YT+ +R              F +M   
Sbjct: 158 ALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLR--------------FQQMPAD 203

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P+  T+N ++  +C+ G +DEA  L+  M   G+RP+ FTY  L+DGFC  GRV  A
Sbjct: 204 GCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEA 263

Query: 245 KELFVSMESMG 255
             +   M+  G
Sbjct: 264 FRMLDKMKEKG 274



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 112/285 (39%), Gaps = 61/285 (21%)

Query: 22  IFDYMLRMHPSP-----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++   LR    P     P   ++N ++  + +    D  + L +++   G+ P+++T+++
Sbjct: 190 VYTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTM 249

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKPDAITYNTIIDG---- 129
           L++ FC  GRV   F +L ++      P   T+ +L+     C      Y  + D     
Sbjct: 250 LVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHE 309

Query: 130 --------------LCKQGFVDKAKELFLKMKDKNV------------------------ 151
                         L K+    +A E   +M  +                          
Sbjct: 310 TSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLC 369

Query: 152 -----------KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                       P    Y  VI+      ++++A      M+ +G+  +V+++N+++D  
Sbjct: 370 ELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCF 429

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            K G +D+A  ++  M   G  P+  T+NTL+ G+   G V++AK
Sbjct: 430 VKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAK 474



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L    H +  + L  ++   G+ PD Y+ + LI  FC+M +V     +
Sbjct: 522 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDI 581

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE-LFLKMKDKNVK 152
              ++R    PD  T+ SLIK               LC +  V+KAKE LF + +     
Sbjct: 582 FNDMVRFGVVPDSYTYNSLIK--------------ALCDERRVNKAKEILFARERSGCST 627

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            N  +Y  ++        ++EA  L  + + +  Q +  +   I  E+
Sbjct: 628 SNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEV 675


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N+++ C  K    D    + K +   G  P+L T + LI+ + K+G V +  VVL 
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLK 492

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++   F PD++TFTSL              IDGLC    +D A   F +M +  V+PN 
Sbjct: 493 MLMEHGFMPDIITFTSL--------------IDGLCNTHQLDDAFVCFEEMAEWGVRPNA 538

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C A   N+A  L  +M   GV P+  +FN ++   C+  K+D+A  + + 
Sbjct: 539 QTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 598

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ GV PD++TYN+L+   C   RVN AKE+  + E  GC
Sbjct: 599 MVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGC 639



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 26/245 (10%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           +HPS     + + ML CL+K       +   KR+++ G   D     I+++C  K   VS
Sbjct: 326 LHPS-----ACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVS 380

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKV---CK------------------PDAITYNTII 127
               +L   +++   P    +  +IK    CK                     ++YN +I
Sbjct: 381 DLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVI 440

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D   K G VDKA+E+  +M+DK   PN+VT+ ++I G+    + + AK +   +M+ G  
Sbjct: 441 DCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+++TF  ++D LC   ++D+A    + M + GVRP+A TYN L+   C  G VN A +L
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDL 560

Query: 248 FVSME 252
              M+
Sbjct: 561 LNKMK 565



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 65/118 (55%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN +I    + G VD A   F +M     +P+  TY S++ G C     +EA R
Sbjct: 185 RPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVR 244

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           L  +M  +G++PNV T+ +++D  C  G+++EA  +LD M + GV P   TY TL+ G
Sbjct: 245 LVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 24/191 (12%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+  + ++G   +   V  ++ R    P    + +LI                       
Sbjct: 159 LVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADG 218

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD  TYN+++ G+C++G VD+A  L  +M+ + ++PNV TYT ++ GFC A    EA 
Sbjct: 219 CRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAF 278

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+  +M ++GV P+  T+  ++  + +  + D+A  +L   + H         +T+L  +
Sbjct: 279 RMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTML--Y 336

Query: 236 CLTGRVNHAKE 246
           CL+ + + AKE
Sbjct: 337 CLSKK-DMAKE 346



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +++   + G    A E+F++M    ++P+   Y ++I     A   + A   F +M   
Sbjct: 158 ALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPAD 217

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G +P+  T+N ++  +C+ G +DEA  L+  M   G+RP+ FTY  L+DGFC  GRV  A
Sbjct: 218 GCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEA 277

Query: 245 KELFVSMESMG 255
             +   M+  G
Sbjct: 278 FRMLDKMKEKG 288



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 84/292 (28%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N ++    +    DT    F+++ + G  PD +T++ L++  C+ G V      
Sbjct: 186 PSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAV-- 243

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R++R      +          +P+  TY  ++DG C  G V++A  +  KMK+K V P
Sbjct: 244 --RLVRQMEGEGI----------RPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAP 291

Query: 154 NVVTYTSVIRG----------FCYANDW-------------------------NEAKRLF 178
           +  TY +++ G          +   +DW                          EA    
Sbjct: 292 SEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFE 351

Query: 179 IEMMDQGVQPNVVTFNVIM----------------DELCKNG------------------ 204
             M  +G   +   F ++M                D   KNG                  
Sbjct: 352 KRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNC 411

Query: 205 -KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               +A+  L  M+  G+     +YN ++D F   G V+ A+E+   M+  G
Sbjct: 412 KNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKG 463



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L    H +  + L  ++   G+ PD Y+ + LI  FC+M +V     +
Sbjct: 536 PNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDI 595

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE-LFLKMKDKNVK 152
              ++R    PD  T+ SLIK               LC +  V+KAKE LF + +     
Sbjct: 596 FNDMVRFGVVPDSYTYNSLIK--------------ALCDERRVNKAKEILFARERSGCST 641

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            N  +Y  ++        ++EA  L  + + +  Q +  +   I  E+
Sbjct: 642 SNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEV 689


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++    ++   D+ + +F+ +   G  PD YT+  L+N   K GRV         +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 98  LRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCKQGFV 136
           L    TP++ T+  L+   +                     P  +TYN ++D LC  G V
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A++LF KM      P+  TY++++ G   +    EA ++F EM+D+GV  ++V +N +
Sbjct: 222 GAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSL 281

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G MD    L+  M + G  PDAF++NT++D      + + A+E+F  M   GC
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F  M R     P V ++NI+L  L           LF ++   G  PD YT+S L+
Sbjct: 189 ALGLFAEMKR-RGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV 247

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK----------- 117
           N   K GRV     V   ++      D+V + SL+          +V K           
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH 307

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDA ++NTI+D L K    D A+E+F +M +   KP++++Y  +I  +    D  +A+++
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM++ G  P   T+N ++  L  +G++DEA ++L+ M   G RPD  TYN L+D    
Sbjct: 368 LEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGK 427

Query: 238 TGRVNHAKELFVSMESMGC 256
            G    A  LF  M+  G 
Sbjct: 428 RGENQRAARLFQQMKDKGV 446



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA   FD ML    +P  + ++N+++    K    D  L LF  +   G  P + T++I
Sbjct: 152 QEARSFFDAMLERGLTPN-IPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  C  GRV        R L    T D          C PD+ TY+T+++GL K G V
Sbjct: 211 LLDALCSAGRVGAA-----RKLFHKMTGDG---------CSPDSYTYSTLVNGLGKSGRV 256

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A ++F +M D+ V  ++V Y S++     A + +   +L  EM  +G  P+  +FN I
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MD L K  K D A  +   M++ G +PD  +YN L+D +   G    A+++   M   G
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++  L  +  ++    ++K+L   G   D + +++LI  F + G++     +
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +               IK  +PD  TY  +++ L K G V +A+  F  M ++ + P
Sbjct: 123 FREM--------------KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+ TY  ++  F      + A  LF EM  +G QP+VVT+N+++D LC  G++  A  L 
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M   G  PD++TY+TL++G   +GRV  A ++F  M   G 
Sbjct: 229 HKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGV 271



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC--FTPDVVTFTSL 112
           +++ + R N +G   DL+  +    C   +    H F  L  IL +   F    + +  L
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTV----HAFTKLIDILVNSGEFERAELVYKKL 91

Query: 113 I-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           + K C+ D   YN +I    + G +D A E+F +MK K  +P+  TY  ++     A   
Sbjct: 92  VQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRV 151

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA+  F  M+++G+ PN+ T+N++MD   K G++D A  L   M + G +P   TYN L
Sbjct: 152 QEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNIL 211

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           LD  C  GRV  A++LF  M   GC
Sbjct: 212 LDALCSAGRVGAARKLFHKMTGDGC 236



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   SFN ++  L K    D    +F R+  +G  PDL +++ILI+ + + G  +    +
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ + F P+  T              YN++I  L   G VD+A  +  +M+    +P
Sbjct: 368 LEEMVEAGFIPETKT--------------YNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTY  ++       +   A RLF +M D+GV+P+ +++ V +D L  + ++DEA  L 
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLF 473

Query: 214 DLMIQHGVRPDAFTYNTLL 232
             M   G   D   Y  L+
Sbjct: 474 KDMKAVGCPVDKAMYRILI 492



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 22/176 (12%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A  +F  M+      P + S+NI++   A+         + + +   G  P+  T++
Sbjct: 326 PDAAREVFARMVE-SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYN 384

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            LI+     G+V   F VL  +  +   PDVVT+  L+                     K
Sbjct: 385 SLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDK 444

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
             +PD ++Y   IDGL     +D+A  LF  MK      +   Y  +IR    A D
Sbjct: 445 GVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGD 500



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 130 LCKQGFVDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           L   G +D  + L  +M  + + ++PN  T   +I  +   N   +A  LF +       
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACS 62

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P V  F  ++D L  +G+ + A  +   ++Q G + D F YN L+  F  +G+++ A E+
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 248 FVSMESMGC 256
           F  M+  G 
Sbjct: 123 FREMKIKGS 131


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 56/276 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++ +++   +++   +    LF  +   G+ PD+Y ++ +IN  CK G +   FV+  
Sbjct: 258 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 317

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQG 134
            +      P+  T+ +LI   CK                     + + +NT++DG CK+G
Sbjct: 318 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 377

Query: 135 FVDKA-----------------------------------KELFLKMKDKNVKPNVVTYT 159
            +D+A                                   K L L M+++ V PNVV+++
Sbjct: 378 MIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFS 437

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +I  +C   ++ EA+RLF  M  +G  P+VVT+N  ++  CK GKM+EA  L++ M + 
Sbjct: 438 ILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQER 497

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G+ PD +TY +L+DG   +G V+ A ELF  M  +G
Sbjct: 498 GLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLG 533



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++    K    D  L L   +   G   D +T +I+ + FC+  R      +L  + 
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VV+F+ LI + CK                    P  +TYN  I+  CK+G ++
Sbjct: 426 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M+++ + P+  TYTS+I G   + + + A  LF EM   G+  NVVT+ VI+
Sbjct: 486 EAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 545

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K+G+ DEA  L D M + G+ PD   Y++L+
Sbjct: 546 SGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + +L +FDY  +        S F  +L  L ++ + +  +   +++  +G+   + + + 
Sbjct: 135 DSSLEVFDYARKKGFEIDERSCFEFLLA-LKRSGNMELCVEFLRQMVDSGIEIRVCSWTA 193

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++  CK G V     ++  ++   F              KP  ITYNT+++G  +   V
Sbjct: 194 VVDGLCKKGEVVRAKALMDELVCKGF--------------KPSVITYNTLLNGYIEIKDV 239

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
               E+   M+   V  NV TYT +I  +  ++   EA++LF EM+ +G++P+V  +  I
Sbjct: 240 GGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSI 299

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G M  A  L D M +  + P+A+TY  L++G C  G +  A+ +   M+S G
Sbjct: 300 INWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 358



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF+I++    K +++     LFK +   G  P + T++  I  +CK G++   + +
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 490

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +      PD  T+TSLI              DG    G VD+A ELF +M    +  
Sbjct: 491 INEMQERGLMPDTYTYTSLI--------------DGERASGNVDRALELFNEMPQLGLNR 536

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           NVVTYT +I G       +EA +L+ EM  +G+ P+   ++ ++  L K G +
Sbjct: 537 NVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 589


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 116/235 (49%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    F I++    K    +T+L L + +   G+ PD  T++ ++N  C+   +     +
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           +  +  +   PD VT+T+LI   CK                     D +TY  +I GL K
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSK 338

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A+ +  +M +  ++P+  TYT VI  FC   D     RL  EM ++G +P VVT
Sbjct: 339 AGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT 398

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +NVIM+  CK G+M  A  LL+ MI  GV PD  TYN LLDG C  G+V   +EL
Sbjct: 399 YNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL 453



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 14/235 (5%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           C F   L     PP    FN+++  L +     +  ++F  + S G+   + + + +I+ 
Sbjct: 101 CAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISG 160

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C+ G +     +  R+  +  TPDV T+ +LI+              GLC+ G ++ A+
Sbjct: 161 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ--------------GLCRVGRIEDAR 206

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +F KM  + +KPN V +T +I   C   D      L  EM ++GV+P+ VT+N I++ L
Sbjct: 207 GVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGL 266

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+   +  AS ++  M   G+RPD  TY TL+DG+C    ++ A E+  +M + G
Sbjct: 267 CRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 321


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 25/251 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR+ PSP    +F I+    A +   D  + LF  ++  G F DL + + +++  CK  R
Sbjct: 118 LRIGPSP---KTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 174

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R LR  F+ D VT+  ++                     +   P+  TYNT
Sbjct: 175 VEKAYELF-RALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNT 233

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ G  + G + +A E FL+MK +N + +VVTYT+V+ GF  A +    + +F EM+ +G
Sbjct: 234 MLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREG 293

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+V T+N  +  LCK   ++ A  + + M++ G  P+  TYN L+ G    G+ +  +
Sbjct: 294 VLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGE 353

Query: 246 ELFVSMESMGC 256
           EL   ME+ GC
Sbjct: 354 ELMQRMENEGC 364



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 127/299 (42%), Gaps = 71/299 (23%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSL 58
           ER  SSG+       P++A+ +F   L MH       ++SFN +L  L K+K  +    L
Sbjct: 132 ERYASSGK-------PDKAVKLF---LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 181

Query: 59  FKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP------------- 104
           F+ L   G F  D  T+++++N +C + R      VL  ++     P             
Sbjct: 182 FRALR--GRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFF 239

Query: 105 ----------------------DVVTFTSL---------IKVCK------------PDAI 121
                                 DVVT+T++         IK  +            P   
Sbjct: 240 RAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVA 299

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN  I  LCK+  V+ A  +F +M  K  +PNV TY  +IRG  +A  ++  + L   M
Sbjct: 300 TYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRM 359

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
            ++G +PN  T+N+++    +  ++++A  L + M      P+  TYN L+ G  +  R
Sbjct: 360 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKR 418



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 34/172 (19%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           DA +++  ID   +         L  +M+   + P+  T+  V   +  +   ++A +LF
Sbjct: 88  DASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLF 147

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL-------------------------- 212
           + M + G   ++ +FN I+D LCK+ ++++A  L                          
Sbjct: 148 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIK 207

Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                   L  M+  G+ P+  TYNT+L GF   G++  A E F+ M+   C
Sbjct: 208 RTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNC 259


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 14/240 (5%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ +F  M + +   P   S+  +   L         L  ++ +   G+ P + + +
Sbjct: 101 PLDAVRVFRKM-KEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLN 159

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +LI   CK        +   RI R    P+        + C PD+ TY T+I+GLC+ G 
Sbjct: 160 VLIKALCKNSGTMDAAL---RIFRE--MPN--------RGCPPDSYTYGTLINGLCRLGK 206

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +AKELF +M+ K   P VVTYTS+I G C + D + A RL  EM  +G++PNV T++ 
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +MD  CK+G    A  LLD+M+     P+  TY+TL+ G C  G++  A E+   M+  G
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQG 326



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 16/219 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSIL 77
           AL  + YM  M   PP V+S N+++  L KN    D  L +F+ + + G  PD YT+  L
Sbjct: 139 ALRFYRYMREM-GIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTL 197

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN  C++G++     +   +                K C P  +TY ++I GLC+   +D
Sbjct: 198 INGLCRLGKIGEAKELFKEME--------------TKACSPTVVTYTSLIHGLCQSKDLD 243

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L  +M  K +KPNV TY+S++ G C +   + A  L   M+ +   PN++T++ ++
Sbjct: 244 SAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLV 303

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
             LCK GK+ EA  +LD M   G+RPDA  Y  ++ GFC
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC 342



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F KMK+   +P+  +Y +V       N    A R +  M + G+ P+V + NV++ 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 199 ELCKN-GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCKN G MD A  +   M   G  PD++TY TL++G C  G++  AKELF  ME+  C
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKAC 222


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    D    +  R+   G  PD+ T++ILI  FC  GR+     V
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRV 203

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           + ++L+    P V+T+T LI+                       +PD  TYN +++G+CK
Sbjct: 204 MDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCK 263

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+A E   ++        V TY  ++R       W   ++L  +M+ +G +PN +T
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LC++GK+DEA ++L +M +  + PD ++Y+ L+   C  G+V+ A E    M 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 253 SMG 255
           S G
Sbjct: 384 SGG 386



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D +L+ +   P V ++ I++         D  + L   + S GL PD YT+++++
Sbjct: 200 ALRVMDQLLKDN-CKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVV 258

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---------------------SLIKVCK 117
           N  CK G +   F  L RI ++     V T+                       L+K C+
Sbjct: 259 NGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCE 318

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ITY+T+I  LC+ G +D+AK +   MK+K + P+  +Y  +I   C     + A   
Sbjct: 319 PNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEF 378

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M+  G  P+++++N I+  LCKNG  DEA ++ + + + G  P+A +YNTL      
Sbjct: 379 LDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWS 438

Query: 238 TGRVNHAKELFVSMESMG 255
           +G    A  + + M S G
Sbjct: 439 SGDKIRALGMILEMLSNG 456



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 15/209 (7%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K+  YD  L   + + + G  PD+   + LI  F  M ++     V+             
Sbjct: 89  KSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM------------- 135

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
               L K  KPD   YN +I G CK   VD A ++  +MK +  +P+VVTY  +I  FC 
Sbjct: 136 --EILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCG 193

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               + A R+  +++    +P V+T+ ++++     G +DEA  LLD M+  G+RPD +T
Sbjct: 194 RGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYT 253

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           YN +++G C  G ++ A E    +   GC
Sbjct: 254 YNVVVNGMCKEGMLDRAFEFLSRISKNGC 282



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 24/258 (9%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F+++ R+  +     VS++NI+L  L     ++    L   +   G  P+  T+S LI  
Sbjct: 271 FEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITA 330

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PD 119
            C+ G++     VL  +      PD  ++  LI  +C+                    PD
Sbjct: 331 LCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPD 390

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            ++YN+I+  LCK G  D+A  +F K+ +    PN  +Y ++      + D   A  + +
Sbjct: 391 ILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMIL 450

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLT 238
           EM+  G+ P+ +T+N ++  LC++G +D+A  LL D+      +P   +YNT+L G C  
Sbjct: 451 EMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKV 510

Query: 239 GRVNHAKELFVSMESMGC 256
            R+  A E+  +M + GC
Sbjct: 511 QRIIDAIEVLAAMVNEGC 528



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD++ ++ +I+ FCK  RV H   VL R+ +  F PDVVT              YN +I 
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVT--------------YNILIG 189

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             C +G +D A  +  ++   N KP V+TYT +I         +EA +L  EM+ +G++P
Sbjct: 190 NFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRP 249

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  T+NV+++ +CK G +D A   L  + ++G      TYN LL      G+  + ++L 
Sbjct: 250 DRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLM 309

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 310 SDMLVKGC 317



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 26/254 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ML     P P++ ++ ++  L ++   D   ++ K +    L PD Y++  LI+  C+ G
Sbjct: 312 MLVKGCEPNPIT-YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREG 370

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
           +V      L  ++     PD++++ S++                       C P+A +YN
Sbjct: 371 KVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYN 430

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD- 183
           T+   L   G   +A  + L+M    + P+ +TY S+I   C     ++A  L ++M + 
Sbjct: 431 TLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFES 490

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +  QP V+++N ++  LCK  ++ +A  +L  M+  G  P+  TY  L+ G    G    
Sbjct: 491 EKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYD 550

Query: 244 AKE---LFVSMESM 254
           A E   L V+M+++
Sbjct: 551 AMELANLLVNMDAI 564



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 16/195 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N +L  L KN + D  L++F++L   G  P+  +++ L       G        
Sbjct: 389 PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSG---DKIRA 445

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
           LG IL             L     PD ITYN++I  LC+ G VD+A EL + M + +  +
Sbjct: 446 LGMILEM-----------LSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQ 494

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P V++Y +V+ G C      +A  +   M+++G  PN  T+ +++  +   G   +A  L
Sbjct: 495 PTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMEL 554

Query: 213 LDLMIQ-HGVRPDAF 226
            +L++    +  D+F
Sbjct: 555 ANLLVNMDAISEDSF 569



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL IF+ +  +   PP   S+N + G L  +      L +   + S G+ PD  T++ 
Sbjct: 408 DEALNIFEKLGEVG-CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNS 466

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+C C+ G V     +L  +  S             + C+P  I+YNT++ GLCK   +
Sbjct: 467 LISCLCRDGLVDQAIELLVDMFES-------------EKCQPTVISYNTVLLGLCKVQRI 513

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEAKRLFIEM 181
             A E+   M ++   PN  TYT +I+G  +A    D  E   L + M
Sbjct: 514 IDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVNM 561



 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 34/107 (31%)

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV--------------------- 221
           DQ        F   ++  CK+ K DE+   L  M+  G                      
Sbjct: 70  DQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIE 129

Query: 222 -------------RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                        +PD F YN ++ GFC   RV+HA ++   M+  G
Sbjct: 130 KAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRG 176


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 23/256 (8%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR- 61
           ++S GE  +      E++ +F+ M ++    P V +FN +L  L K    +    ++   
Sbjct: 162 IRSYGEAGLF----KESVKLFENM-KLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEM 216

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           L + G+ PD YT++ILI  FCK   V  GF          F  ++ +F      C PD +
Sbjct: 217 LKTYGVKPDTYTYNILIRGFCKNSMVDEGFY---------FFKEMTSFD-----CDPDVV 262

Query: 122 TYNTIIDGLCKQGFVDKAKELF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           TYNT++DGLC+ G +  A  L   +  K K++ P+VVTYT++IRG+C   + +EA  +  
Sbjct: 263 TYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILE 322

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR-PDAFTYNTLLDGFCLT 238
           EM  +G++PN+VT+N ++  LC+  K D+   +L+ M   G   PDA T+NTL++  C  
Sbjct: 323 EMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCA 382

Query: 239 GRVNHAKELFVSMESM 254
           G ++ A ++F +M+ +
Sbjct: 383 GNLDEAFKVFENMKKL 398



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 30/268 (11%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT----VLSLFKRLNSTGLFPDL 71
           P +A   F+++     S  P + F IML  L + K+ +     + S+ KR N      D 
Sbjct: 98  PTKAFLFFNWIHEKGFSHNPQTYF-IMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDR 156

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------- 115
           + +S LI  + + G       +   +     +P VVTF S++ V                
Sbjct: 157 FFNS-LIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDE 215

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                  KPD  TYN +I G CK   VD+    F +M   +  P+VVTY +++ G C A 
Sbjct: 216 MLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAG 275

Query: 170 DWNEAKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               A  L   M  +   + P+VVT+  ++   C+  ++DEA  +L+ M   G++P+  T
Sbjct: 276 KIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVT 335

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL+ G C   + +  KE+   M+  G
Sbjct: 336 YNTLIKGLCEAQKWDKMKEILEQMKGDG 363



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 130/301 (43%), Gaps = 67/301 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  ++D ML+ +   P   ++NI++    KN   D     FK + S    PD+ T++ 
Sbjct: 207 NMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNT 266

Query: 77  LINCFCKMGR--VSHGFV-----------------------------------VLGRILR 99
           L++  C+ G+  V+H  V                                   +L  +  
Sbjct: 267 LVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNG 326

Query: 100 SCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQGFVD 137
               P++VT+ +LIK +C+                     PDA T+NT+I+  C  G +D
Sbjct: 327 RGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLD 386

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-------GVQPNV 190
           +A ++F  MK   V  +  +Y+ +IR  C   D+ +A+ LF E+ ++       G +P  
Sbjct: 387 EAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLA 446

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            ++  +   LC+NGK  +A  +L  +++ G + D  +Y  ++ G C  G   +   L V 
Sbjct: 447 ASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-DPLSYQIVILGHCKEGSYENGYGLLVW 505

Query: 251 M 251
           M
Sbjct: 506 M 506



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           TY  +++ L ++  ++ A+     ++ ++   VK     + S+IR +  A  + E+ +LF
Sbjct: 119 TYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGEAGLFKESVKLF 178

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCL 237
             M   GV P VVTFN ++  L K G+ + A  + D M++ +GV+PD +TYN L+ GFC 
Sbjct: 179 ENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCK 238

Query: 238 TGRVNHAKELFVSMESMGC 256
              V+     F  M S  C
Sbjct: 239 NSMVDEGFYFFKEMTSFDC 257



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 111/264 (42%), Gaps = 31/264 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHS 75
           +EAL I + M       P + ++N ++  L + + +D +  + +++   G   PD  T +
Sbjct: 315 DEALDILEEM-NGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFN 373

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------- 116
            LIN  C  G +   F V   + +   + D  +++ LI+                     
Sbjct: 374 TLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEK 433

Query: 117 ---------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KP A +Y  +   LC+ G   KA+ +  ++  +  + + ++Y  VI G C 
Sbjct: 434 EILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-DPLSYQIVILGHCK 492

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
              +     L + M+ +   P++  ++ ++D   +  K   A   L+ M++   +P   T
Sbjct: 493 EGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTST 552

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
           ++++L+     G V+ +  + V M
Sbjct: 553 WHSILNRLLEQGCVHESAGVIVMM 576



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 23/215 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-------NSTGLFP 69
           +EA  +F+ M ++  S    +S+++++  L +   Y     LF  L       +S G  P
Sbjct: 386 DEAFKVFENMKKLEVSADS-ASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKP 444

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
              ++  +    C+ G+         R+LR            L+K    D ++Y  +I G
Sbjct: 445 LAASYKCMFQYLCENGKTKKA----ERVLRQ-----------LMKRGTQDPLSYQIVILG 489

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            CK+G  +    L + M  ++  P++  Y  +I GF   +    AK    +M+    +P 
Sbjct: 490 HCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQ 549

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
             T++ I++ L + G + E++ ++ +M++  +R +
Sbjct: 550 TSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQN 584



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 15/197 (7%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           + +L  +   P  +S+  M   L +N        + ++L   G   D  ++ I+I   CK
Sbjct: 434 EILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGT-QDPLSYQIVILGHCK 492

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
            G   +G+ +L  +LR  F PD+                Y+ +IDG  ++     AKE  
Sbjct: 493 EGSYENGYGLLVWMLRRDFLPDIDI--------------YDYLIDGFLRKDKPLLAKETL 538

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            KM   + KP   T+ S++         +E+  + + M+++ ++ N+      +  L   
Sbjct: 539 EKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDR 598

Query: 204 GKMDEASSLLDLMIQHG 220
           G  D+A  + +L+ ++G
Sbjct: 599 GLQDKAFKITELIYKNG 615


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ML    K       L L  ++   G  P+  T+++L+N     G +     +
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKEL 247

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +LR        T+  LI+  C+                    P  +TYNTI+ GLCK
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V  A++L   M +KN+ P++V+Y ++I G+    +  EA  LF E+  +G+ P+VVT
Sbjct: 308 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVT 367

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LC+ G +D A  L D MI+HG  PD FT+  L+ GFC  G +  AKELF  M 
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML 427

Query: 253 SMG 255
           + G
Sbjct: 428 NRG 430



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F   LR     P V ++N ++  L +    D  + L   +   G  PD++T +IL
Sbjct: 348 EAFLLFAE-LRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS---------------------LIKVC 116
           +  FCK+G +     +   +L     PD   + +                     L +  
Sbjct: 407 VRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYN  IDGL K G + +A EL  KM    + P+ VTYTS+I     A    +A+ 
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 526

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F+EM+ +G+ P+VVT+ V++      G++  A      M + GV P+  TYN L++G C
Sbjct: 527 VFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 586

Query: 237 LTGRVNHAKELFVSMESMG 255
              +++ A + F  M++ G
Sbjct: 587 KVRKMDQAYKFFTEMQAKG 605



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M++ H   P V +F I++    K  +      LF  + + GL PD + +   I
Sbjct: 384 AMRLKDEMIK-HGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRI 442

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
               K+G  S  F +   +L   F PD++T+   I             ++ K        
Sbjct: 443 VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 502

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TY +II      G + KA+ +FL+M  K + P+VVTYT +I  +        A   
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 562

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM ++GV PNV+T+N +++ LCK  KMD+A      M   G+ P+ +TY  L++  C 
Sbjct: 563 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCN 622

Query: 238 TGRVNHAKELFVSM 251
            G    A  L+  M
Sbjct: 623 LGHWQEALRLYKDM 636



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 21/206 (10%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP-D 105
           AK    +  L +F ++ S G+ PDL       NC     RV        R+LR   +  D
Sbjct: 130 AKKSMLEKCLLVFYKMVSKGMLPDLK------NC----NRVL-------RLLRDRDSSID 172

Query: 106 VVTFTSLIKV---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
           V      + V    +P  +TYNT++D  CKQG V +A +L L+M+     PN VTY  ++
Sbjct: 173 VAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLV 232

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            G  ++ +  +AK L  EM+  G++ +  T++ ++   C+ G++DEAS L + M+  G  
Sbjct: 233 NGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAV 292

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELF 248
           P   TYNT++ G C  GRV+ A++L 
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLL 318



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +   M +M   P  V+ +N+++  L+ +   +    L + +   GL    YT+  
Sbjct: 207 QEALQLLLQMQKMGCLPNDVT-YNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDP 265

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI  +C+ G++     +   +L     P +VT+ +++  +CK                  
Sbjct: 266 LIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 325

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++YNT+I G  + G + +A  LF +++ + + P+VVTY ++I G C   D + A 
Sbjct: 326 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAM 385

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           RL  EM+  G  P+V TF +++   CK G +  A  L D M+  G++PD F Y T + G
Sbjct: 386 RLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 444



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 22/218 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G++    P++A  + + ML     PP + ++N+ +  L K  +      L K++   GL 
Sbjct: 444 GELKLGDPSKAFGMQEEML-ARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 502

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD  T++ +I+     G +     V   +L     P VVT+T LI               
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 562

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K   P+ ITYN +I+GLCK   +D+A + F +M+ K + PN  TYT +I   C 
Sbjct: 563 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCN 622

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
              W EA RL+ +M+D+ +QP+  T + ++  L K+ K
Sbjct: 623 LGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKDYK 660



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 22/232 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML     P   +    ++G L K         + + + + G  PDL T+++ I+  
Sbjct: 422 LFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 480

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
            K+G +     ++ ++L +   PD VT+TS+I                     K   P  
Sbjct: 481 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSV 540

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TY  +I     +G +  A   F +M +K V PNV+TY ++I G C     ++A + F E
Sbjct: 541 VTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTE 600

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           M  +G+ PN  T+ ++++E C  G   EA  L   M+   ++PD+ T++ LL
Sbjct: 601 MQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALL 652



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 73/121 (60%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A+E++  M +  ++P VVTY +++  FC      EA +L ++M   G  PN VT+NV
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ L  +G++++A  L+  M++ G+   A+TY+ L+ G+C  G+++ A  L   M S G
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290

Query: 256 C 256
            
Sbjct: 291 A 291



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKA---KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K   +TY  I+D L + G +  A    E  + +K +N   +V+    ++  +   +   +
Sbjct: 78  KRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEK 137

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              +F +M+ +G+ P++   N ++  L  ++  +D A  + ++M++ G+RP   TYNT+L
Sbjct: 138 CLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTML 197

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
           D FC  G+V  A +L + M+ MGC
Sbjct: 198 DSFCKQGKVQEALQLLLQMQKMGC 221


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 69/291 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHS 75
           + A+  F+ ML+M  +P  V  FN +L  L K K HY TVLSL  ++ S G+ PDL+T S
Sbjct: 187 DNAVLSFNRMLQMRHTPSIVE-FNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 245

Query: 76  ILINCFC-KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC----------------- 116
           ILINC+  KMG                + P+ +T T+LIK +C                 
Sbjct: 246 ILINCYYFKMG----------------YEPNTITLTTLIKGLCLNGKVNEALLFHDHVLA 289

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                + +TY  +I+GLCK G    A ++  +++ K V  NVV Y++VI G C      +
Sbjct: 290 LGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVID 349

Query: 174 A---------KR------------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           A         KR            LF EM+ + + PNV TFN+++D LCK+GK+ EA ++
Sbjct: 350 AYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNV 409

Query: 213 LDLMIQHGV--------RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M+   +        +P+  +YNTL+DGFC +GR++HA +L   M   G
Sbjct: 410 IIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRG 460



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 114/202 (56%), Gaps = 6/202 (2%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
             SLF  +    + P++YT +IL++  CK G++     V+ +++          FT +  
Sbjct: 371 AFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALN----LFTEM-- 424

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKP+ ++YNT+IDG CK G +  A +L  +M+D+   PNV+TY S++   C  +  ++A
Sbjct: 425 HCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKA 484

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L     DQG+QP++ T+N ++D LCK G++ +A  +   ++  G     +TYN +++G
Sbjct: 485 IALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMING 544

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            CL G ++ A+ L   ME  GC
Sbjct: 545 LCLEGLLDEAETLLSKMEDNGC 566



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 29/246 (11%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKN-----------KHYDTVLSLFKR 61
           T+   +A  +F  M+ +    P V +FNI++  L K+           K  D  L+LF  
Sbjct: 365 TVVTFKAFSLFHEMV-LKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTE 423

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           ++     P+  +++ LI+ FCK GR+SH + +L + +R    P             P+ I
Sbjct: 424 MHCK---PNTVSYNTLIDGFCKSGRLSHAWKLLDQ-MRDRGQP-------------PNVI 466

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN+++  LCK   VDKA  L    KD+ ++P++ TY +++ G C      +A+ +F ++
Sbjct: 467 TYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDL 526

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G      T+N++++ LC  G +DEA +LL  M  +G  PD  TY T++         
Sbjct: 527 LIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDEN 586

Query: 242 NHAKEL 247
           + A++L
Sbjct: 587 DKAEKL 592


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 116/235 (49%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    F I++    K    +T+L L + +   G+ PD  T++ ++N  C+   +     +
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           +  +  +   PD VT+T+LI   CK                     D +TY  +I GL K
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSK 462

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A+ +  +M +  ++P+  TYT VI  FC   D     RL  EM ++G +P VVT
Sbjct: 463 AGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT 522

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +NVIM+  CK G+M  A  LL+ MI  GV PD  TYN LLDG C  G+V   +EL
Sbjct: 523 YNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL 577



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           C F   L     PP    FN+++  L +     +  ++F  + S G+   + + + +I+ 
Sbjct: 225 CAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISG 284

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C+ G +     +  R+  +  TPDV               TY  +I GLC+ G ++ A+
Sbjct: 285 MCRAGDLDGAETLHRRMSEAGVTPDV--------------YTYGALIQGLCRVGRIEDAR 330

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +F KM  + +KPN V +T +I   C   D      L  EM ++GV+P+ VT+N I++ L
Sbjct: 331 GVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGL 390

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+   +  AS ++  M   G+RPD  TY TL+DG+C    ++ A E+  +M + G
Sbjct: 391 CRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 445



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 61/114 (53%)

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A   +L++ D  + P    +  ++R      +   A+ +F EM  +GV+  VV+FN ++
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             +C+ G +D A +L   M + GV PD +TY  L+ G C  GR+  A+ +F  M
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+      P + +++ ++  L K +  + V+ L K +   GL P++YT +I 
Sbjct: 210 EALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTIC 268

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G++   + +  R+                  C PD +TY  +ID LC  G ++
Sbjct: 269 IRVLGRAGKIDEAYEIFRRMDDEG--------------CGPDLVTYTVLIDALCNAGQLE 314

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKELF+KMK    KP+ V Y +++  F    D +  K  + +M   G  P+VVTF +++
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK    DEA +  D+M + G+ P+  TYNTL+ G    GR+  A +L  +MES+G
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  IFD   +     P ++S+N ++G L +  + +    LFK + + G  PD +T ++L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
               K G+++  F +   ++               + CKPDAITYN +I  L K   +DK
Sbjct: 831 AVHGKSGKITELFELYKEMIS--------------RRCKPDAITYNIVISSLAKSNNLDK 876

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A + F  +   + +P   TY  +I G        EA RLF EM D G +PN   FN++++
Sbjct: 877 ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              K G  + A  L   M+  G+RPD  +Y  L+D  CL GRV+ A   F  ++S G
Sbjct: 937 GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 14/215 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N  L  LA+        ++F  L   GL PD  T+++++ C+ K+G+V     +
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++R+               C+PD I  N++ID L K G VD+A ++F +MKD  + P
Sbjct: 530 LSEMIRNG--------------CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY +++ G        +A  LF  M+++   PN ++FN ++D  CKN +++ A  + 
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMF 635

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             M     +PD  TYNT++ G     +VNHA   F
Sbjct: 636 SKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFF 670



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 14/221 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K + +D   + F  +   G+ P+L+T++ LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           LG            T  S+    +P A TYN  ID   K G   KA E F KMK K + P
Sbjct: 425 LG------------TMESV--GVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVP 470

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+V   + +          EAK +F  + + G+ P+ VT+N++M    K G++DEA +LL
Sbjct: 471 NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLL 530

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
             MI++G  PD    N+L+D     GRV+ A ++F  M+ M
Sbjct: 531 SEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA   FD M R     P + ++N ++  L +    +  L L   + S G+ P  YT++I
Sbjct: 384 DEAFATFDVM-RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNI 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK--------------- 117
            I+ F K G          ++      P++V    +  SL ++ +               
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD++TYN ++    K G VD+A  L  +M     +P+V+   S+I     A   +EA 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M D  + P VVT+N ++  L K G++ +A  L + MI+    P+  ++NTLLD F
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C    V  A ++F  M  M C
Sbjct: 623 CKNDEVELALKMFSKMTVMDC 643



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P   ++NI++  LAK+ + D  L  F  L S+   P   T+  LI+   K+GR+     +
Sbjct: 856  PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRL 915

Query: 94   LGRILRSCFTPDVVTFTSLIK----------VC-----------KPDAITYNTIIDGLCK 132
               +      P+   F  LI            C           +PD  +Y  ++D LC 
Sbjct: 916  FEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCL 975

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
             G VD+A   F ++K   + P+ + Y  +I G   +    EA  L+ EM ++G+ P++ T
Sbjct: 976  AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +N +M  L   G +++A  + + +   G+ PD FTYN L+ G+ L+    HA  ++ +M 
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 253  SMGC 256
              GC
Sbjct: 1096 VDGC 1099



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I +  L +    D    +F+R++  G  PDL T+++LI+  C  G++ +   +
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             ++  +   PD V + +L+                         PD +T+  ++D LCK
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A   F  M+ + + PN+ TY ++I G   A    +A +L   M   GVQP   T
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYT 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+ +D   K+G+  +A    + M   G+ P+    N  L      GR+  AK +F  + 
Sbjct: 440 YNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLR 499

Query: 253 SMG 255
             G
Sbjct: 500 ENG 502



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 15/215 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             EA+ +F+ M   +   P  + FNI++    K    +T   LFKR+ + G+ PDL +++I
Sbjct: 910  EEAMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++C C  GRV         +  +   PD               I YN II+GL K   +
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDF--------------IAYNRIINGLGKSQRM 1014

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A  L+ +M+++ + P++ TY S++     A    +AKR++ E+   G++P+V T+N +
Sbjct: 1015 EEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNAL 1074

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +   + A ++   M+  G  P+  TY  L
Sbjct: 1075 IRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 14/216 (6%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N ML  L  +   + + ++F+ +    +  DL T+  +       G +     VL ++ +
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           + F  +              A +YN +I  L + GF  +A E++ +M  + +KP++ TY+
Sbjct: 186 AGFVLN--------------AYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYS 231

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++       D      L  EM D G++PNV TF + +  L + GK+DEA  +   M   
Sbjct: 232 ALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE 291

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G  PD  TY  L+D  C  G++ +AKELFV M++ G
Sbjct: 292 GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG 327



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR +   P   ++N+M+ C +K    D  ++L   +   G  PD+   + LI+   K GR
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R+     +P VVT+ +L+                     K C P+ I++NT
Sbjct: 558 VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNT 617

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++D  CK   V+ A ++F KM   + KP+V+TY +VI G    N  N A   F   + + 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA-FWFFHQLKKS 676

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + P+ VT   ++  L K G++ +A S+  D M Q   R +   +  L+ G  +   ++ A
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKA 736



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 27  LRMHPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           LR+H     +++ F  M   + + +  DT L++FK L+  G    L   + ++N   K G
Sbjct: 132 LRVHDKVEDMAAVFEFMQKKIIR-RDLDTYLTIFKALSIRG---GLRQMTTVLNKMRKAG 187

Query: 86  RVSHGFVVLGRI---LRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAK 140
            V + +   G I   ++S F  + +     +  +  KP   TY+ ++  L K+   +   
Sbjct: 188 FVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVM 247

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L  +M+D  ++PNV T+T  IR    A   +EA  +F  M D+G  P++VT+ V++D L
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C  G+++ A  L   M  +G +PD   Y TLLD F   G ++  KE +  ME+ G
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CK  R  + + +  +            FT  + +  P   +YN +I  L +  + 
Sbjct: 758 LVRVLCKHKRELYAYQIFDK------------FTKKLGI-SPTLASYNCLIGELLEVHYT 804

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA +LF  MK+    P+  T+  ++     +    E   L+ EM+ +  +P+ +T+N++
Sbjct: 805 EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K+  +D+A      ++    RP   TY  L+DG    GR+  A  LF  M   GC
Sbjct: 865 ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR-----GFCYA 168
           K+ + D  TY TI   L  +G + +   +  KM+      N  +Y  +I      GFC  
Sbjct: 151 KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFC-- 208

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               EA  ++  M+ +G++P++ T++ +M  L K    +    LL  M   G+RP+ +T+
Sbjct: 209 ---GEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTF 265

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
              +      G+++ A E+F  M+  GC
Sbjct: 266 TICIRVLGRAGKIDEAYEIFRRMDDEGC 293


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++  M+      P + +++ ++  L K +  + V+ L K +   GL P++YT +I 
Sbjct: 210 EALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTIC 268

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    + G++   + +  R+                  C PD +TY  +ID LC  G ++
Sbjct: 269 IRVLGRAGKIDEAYEIFRRMDDEG--------------CGPDLVTYTVLIDALCNAGQLE 314

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AKELF+KMK    KP+ V Y +++  F    D +  K  + +M   G  P+VVTF +++
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK    DEA +  D+M + G+ P+  TYNTL+ G    GR+  A +L  +MES+G
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  IFD   +     P ++S+N ++G L +  + +    LFK + + G  PD +T ++L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
               K G+++  F +   ++               + CKPDAITYN +I  L K   +DK
Sbjct: 831 AVHGKSGKITELFELYKEMIS--------------RRCKPDAITYNIVISSLAKSNNLDK 876

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A + F  +   + +P   TY  +I G        EA RLF EM D G +PN   FN++++
Sbjct: 877 ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              K G  + A  L   M+  G+RPD  +Y  L+D  CL GRV+ A   F  ++S G
Sbjct: 937 GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 14/215 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N  L  LA+        ++F  L   GL PD  T+++++ C+ K+G+V     +
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++R+               C+PD I  N++ID L K G VD+A ++F +MKD  + P
Sbjct: 530 LSEMIRNG--------------CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY +++ G        +A  LF  M+ +   PN ++FN ++D  CKN +++ A  + 
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMF 635

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             M     +PD  TYNT++ G     +VNHA   F
Sbjct: 636 SKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFF 670



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 14/221 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++  L K + +D   + F  +   G+ P+L+T++ LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L          D +    +    +P A TY T ID   K G   KA E F KMK K + P
Sbjct: 425 L----------DTMESVGV----QPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVP 470

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+V   + +          EAK +F  + + G+ P+ VT+N++M    K G++DEA +LL
Sbjct: 471 NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLL 530

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
             MI++G  PD    N+L+D     GRV+ A ++F  M+ M
Sbjct: 531 SEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P   ++NI++  LAK+ + D  L  F  L S+   P   T+  LI+   K+GR+     +
Sbjct: 856  PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRL 915

Query: 94   LGRILRSCFTPDVVTFTSLIK----------VC-----------KPDAITYNTIIDGLCK 132
               +      P+   F  LI            C           +PD  +Y  ++D LC 
Sbjct: 916  FEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCL 975

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
             G VD+A   F ++K   + P+ + Y  +I G   +    EA  L+ EM ++G+ P++ T
Sbjct: 976  AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +N +M  L   G +++A  + + +   G+ PD FTYN L+ G+ L+    HA  ++ +M 
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 253  SMGC 256
              GC
Sbjct: 1096 VDGC 1099



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA   FD M R     P + ++N ++  L +    +  L L   + S G+ P  YT+  
Sbjct: 384 DEAFATFDVM-RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYIT 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK--------------- 117
            I+ F K G          ++      P++V    +  SL ++ +               
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD++TYN ++    K G VD+A  L  +M     +P+V+   S+I     A   +EA 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F  M D  + P VVT+N ++  L K G++ +A  L + MI     P+  ++NTLLD F
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C    V  A ++F  M  M C
Sbjct: 623 CKNDEVELALKMFSKMTVMDC 643



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I +  L +    D    +F+R++  G  PDL T+++LI+  C  G++ +   +
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKEL 319

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             ++  +   PD V + +L+                         PD +T+  ++D LCK
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A   F  M+ + + PN+ TY ++I G   A    +A +L   M   GVQP   T
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYT 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   +D   K+G+  +A    + M   G+ P+    N  L      GR+  AK +F  + 
Sbjct: 440 YITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLR 499

Query: 253 SMG 255
             G
Sbjct: 500 ENG 502



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 15/215 (6%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             EA+ +F+ M   +   P  + FNI++    K    +T   LFKR+ + G+ PDL +++I
Sbjct: 910  EEAMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTI 968

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++C C  GRV         +  +   PD               I YN II+GL K   +
Sbjct: 969  LVDCLCLAGRVDEALYYFNELKSTGLDPDF--------------IAYNRIINGLGKSQRM 1014

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A  L+ +M+++ + P++ TY S++     A    +AKR++ E+   G++P+V T+N +
Sbjct: 1015 EEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNAL 1074

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +   + A ++   M+  G  P+  TY  L
Sbjct: 1075 IRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 14/216 (6%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N ML  L  +   + + ++F+ +    +  DL T+  +       G +     VL ++ +
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           + F  +              A +YN +I  L + GF  +A E++ +M  + +KP++ TY+
Sbjct: 186 AGFVLN--------------AYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYS 231

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++       D      L  EM D G++PNV TF + +  L + GK+DEA  +   M   
Sbjct: 232 ALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE 291

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G  PD  TY  L+D  C  G++ +AKELFV M++ G
Sbjct: 292 GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG 327



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR +   P   ++N+M+ C +K    D  ++L   +   G  PD+   + LI+   K GR
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R+     +P VVT+ +L+                     K C P+ I++NT
Sbjct: 558 VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNT 617

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++D  CK   V+ A ++F KM   + KP+V+TY +VI G    N  N A   F   + + 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA-FWFFHQLKKS 676

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + P+ VT   ++  L K G++ +A S+  D M Q   R +   +  L+ G  +   ++ A
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKA 736



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 27  LRMHPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           LR+H     +++ F  M   + + +  DT L++FK L+  G    L   + ++N   K G
Sbjct: 132 LRVHDKVEDMAAVFEFMQKKIIR-RDLDTYLTIFKALSIRG---GLRQMTTVLNKMRKAG 187

Query: 86  RVSHGFVVLGRI---LRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKAK 140
            V + +   G I   ++S F  + +     +  +  KP   TY+ ++  L K+   +   
Sbjct: 188 FVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVM 247

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L  +M+D  ++PNV T+T  IR    A   +EA  +F  M D+G  P++VT+ V++D L
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C  G+++ A  L   M  +G +PD   Y TLLD F   G ++  KE +  ME+ G
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CK  R  + + +  +            FT  + +  P   +YN +I  L +  + 
Sbjct: 758 LVRVLCKHKRELYAYQIFDK------------FTKKLGI-SPTLASYNCLIGELLEVHYT 804

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA +LF  MK+    P+  T+  ++     +    E   L+ EM+ +  +P+ +T+N++
Sbjct: 805 EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K+  +D+A      ++    RP   TY  L+DG    GR+  A  LF  M   GC
Sbjct: 865 ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR-----GFCYA 168
           K+ + D  TY TI   L  +G + +   +  KM+      N  +Y  +I      GFC  
Sbjct: 151 KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFC-- 208

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               EA  ++  M+ +G++P++ T++ +M  L K    +    LL  M   G+RP+ +T+
Sbjct: 209 ---GEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTF 265

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
              +      G+++ A E+F  M+  GC
Sbjct: 266 TICIRVLGRAGKIDEAYEIFRRMDDEGC 293


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 22/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           VS  N++ G   + +  D  L LF +++    +P + T++++I   C++GR +    +  
Sbjct: 275 VSYTNLIHG-FCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFK 333

Query: 96  RILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQG 134
            +      P+V T+T LI  +C+                    P  +TYN +IDG CK+G
Sbjct: 334 EMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
               A E+   M+  N  PN  TY  +I GFC   + ++A  L  +M+++ +QPNVVT+N
Sbjct: 394 LSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYN 453

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++   CK G +  A  LL LM + G+ PD +TY+  +D  C  G V  A+ LF S++  
Sbjct: 454 ILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513

Query: 255 G 255
           G
Sbjct: 514 G 514



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 26/263 (9%)

Query: 17  NEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           +EAL +F    +MH     P V ++ +++  L +       L++FK +      P+++T+
Sbjct: 291 DEALKLFS---QMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTY 347

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------- 113
           ++LI   C+         +L  +L     P VVT+ +LI                     
Sbjct: 348 TVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMES 407

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
             C P+A TYN +I G C+   + KA  L  KM ++ ++PNVVTY  +I G C   D   
Sbjct: 408 NNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGS 467

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A +L   M + G+ P+  T++V +D LCK G ++EA SL + + + G++ +   Y+TL+D
Sbjct: 468 AYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLID 527

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+C  G+V+  + L   M S GC
Sbjct: 528 GYCKVGKVSDGRFLLDKMLSAGC 550



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N++L  L++    D + S++  +    + P+++T + ++N +CK+G V    + + +I+
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           ++  + D  T+TSLI                     K C  + ++Y  +I G C+   VD
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M + N  P V TYT +I   C      EA  +F EM ++  QPNV T+ V++
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             LC++   D+A  +L+ M++ G+ P   TYN L+DG+C  G    A E+   MES  C
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNC 410



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K     + L +   + S    P+  T++ LI  FC+   +     +
Sbjct: 377 PSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSL 436

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L     P+VVT+  LI   CK                    PD  TY+  ID LCK
Sbjct: 437 LHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCK 496

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V++A+ LF  +K+K +K N V Y+++I G+C     ++ + L  +M+  G  PN +T
Sbjct: 497 RGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSIT 556

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK     EA  L+D+MI+  + P A TY  L+D        + A ++F  M 
Sbjct: 557 YNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQML 616

Query: 253 SMG 255
           S G
Sbjct: 617 STG 619



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K     +   L   +N +GL PD +T+S+ I+  CK G V      
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEA--- 503

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                RS F       +   K  K + + Y+T+IDG CK G V   + L  KM      P
Sbjct: 504 -----RSLFE------SLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVP 552

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY S+I G+C   ++ EA+ L   M+ + ++P   T+ +++D L K+ + D+A  + 
Sbjct: 553 NSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMF 612

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M+  G  PD F Y   +  +C  GR+  A+ L   M + G
Sbjct: 613 DQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKG 654



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 27/233 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++++ +  L K    +   SLF+ L   G+  +   +S LI+ +CK+G+VS G  +
Sbjct: 482 PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFL 541

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L +   P+ +T+ SLI   CK                    P A TY  +ID L K
Sbjct: 542 LDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLK 601

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A ++F +M      P+V  YT+ I  +C      +A+ L  +M  +G+ P+ + 
Sbjct: 602 DDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTML 661

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + + +D   + G +D A  +L  M + G  P  +TY+      CL   +++AK
Sbjct: 662 YTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYS------CLIKHLSNAK 708



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 51/283 (18%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M++     P   ++ I++  L K+  +D    +F ++ STG  PD++ ++  
Sbjct: 572 EARLLVDIMIK-RDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ +C  GR+    V++ ++      PD + +T  I                       C
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGC 690

Query: 117 KPDAITYNTIID---------------------GLCKQGFVDKAK--------ELFLKMK 147
           +P   TY+ +I                      G+    F +  +        +LF KM 
Sbjct: 691 EPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA 750

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           +    PN  TY   I G C       A RLF  M ++G  PN   +N ++   C+ G   
Sbjct: 751 EHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYG 810

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           EA   LD+MI++   P   +   LL G    G    AK +F S
Sbjct: 811 EAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCS 853



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 110/290 (37%), Gaps = 51/290 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD ML    S P V  +   +     +        L  ++N+ G+ PD   +++
Sbjct: 606 DQAHDMFDQMLST-GSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL 664

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
            I+ + + G +   F +L R+      P   T++ LIK                      
Sbjct: 665 FIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSG 724

Query: 116 -----------------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                                        C P+A TY   I GLCK G ++ A  LF  M
Sbjct: 725 VASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHM 784

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K+K   PN   Y S++   C    + EA R    M++    P++ +  +++  L   G  
Sbjct: 785 KEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGND 844

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++A  +    +Q     D   +  L+DG    G  +   +LF  ME+ GC
Sbjct: 845 EKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGC 894


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 141/263 (53%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+  ++     P V SFN+++  + +  ++   L L +R+   G  PD  TH+I
Sbjct: 196 QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNI 255

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L++  C+  +V+ G  VL R+ R     P+ VT+TS+I   CK                 
Sbjct: 256 LVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLES 315

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K   ++ A  ++ ++  ++  P+VVT++S+I G+C     ++A
Sbjct: 316 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDA 375

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
           KR++ EM    +QPNV TF++I+  LCK  +  EA  +L +L ++  + P  F YN ++D
Sbjct: 376 KRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVID 435

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V+ A  +   M+  GC
Sbjct: 436 ILCKGGKVDEANLIVTDMKEKGC 458



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 23/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M+      P    F+ + G        D   +L  + +  G   + Y ++ L
Sbjct: 126 DALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYL 185

Query: 78  INCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLIKV--------------------- 115
           +N     GR      +    ++   ++PDV +F  +IK                      
Sbjct: 186 LNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFG 245

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEA 174
           C PD IT+N ++DGLC+   V+K  E+  +++   V  PN VTYTSVI G+C A    +A
Sbjct: 246 CSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDA 305

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             ++ +M++ G +PN VT+NV+++   K   M+ A  +   +I     PD  T+++L+DG
Sbjct: 306 MSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDG 365

Query: 235 FCLTGRVNHAKELFVSM 251
           +C  G+++ AK ++  M
Sbjct: 366 YCRCGQLDDAKRIWKEM 382



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 23/227 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +++ ML     P  V+ +N+++    K    ++ + ++++L      PD+ T S 
Sbjct: 303 EDAMSVYNDMLESGTRPNTVT-YNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSS 361

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+ +C+ G++     +   +      P+V TF+ +I  +CK                  
Sbjct: 362 LIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRT 421

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P    YN +ID LCK G VD+A  +   MK+K   P+  TYT +I G C      EA
Sbjct: 422 DIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEA 481

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
             LF +M++ G +P+ +T N  +  + K G  +E   ++ +   HG+
Sbjct: 482 ITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGL 528



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 22/182 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +F+ ++    +    D    ++K +    + P++YT SI+I+  CK  R +    
Sbjct: 353 PPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALD 412

Query: 93  VLGRI-LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
           +L  + +R+   P    +  +I +                     C PD  TY  +I G 
Sbjct: 413 ILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGH 472

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C +G + +A  LF KM +   +P+ +T  S +     A   NE  ++ +     G+    
Sbjct: 473 CMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGLASQK 532

Query: 191 VT 192
           V+
Sbjct: 533 VS 534



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 37/175 (21%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC----------- 166
           P   +Y  +I  LC+ G    A +LF +M D++       + S + G C           
Sbjct: 106 PSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAST 165

Query: 167 --------------YANDW-----------NEAKRLFIEMMDQGV-QPNVVTFNVIMDEL 200
                         YA ++            +A  LF   +  G+  P+V +FNV++  +
Sbjct: 166 LLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGV 225

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+ G   +A  L++ M + G  PD  T+N L+DG C   +VN   E+   ++  G
Sbjct: 226 CRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDE 208
           +V P+  +Y  VI   C +    +A +LF +MMDQ G  P    F+ +       G +D 
Sbjct: 103 SVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDA 162

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           AS+LL    + G   + + YN LL+     GR   A  LF S
Sbjct: 163 ASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFES 204


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 26/241 (10%)

Query: 40  NIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           N  L CL   K  D  +  L  R++  G  P+  +++ +I   C   R      ++ R+ 
Sbjct: 195 NTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMA 254

Query: 99  RS---CFTPDVVTFTSLI----------KVC-----------KPDAITYNTIIDGLCKQG 134
           +    C +PDVV+F ++I          K C           +PD +TYN+I+D LCK  
Sbjct: 255 KEGGRC-SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKAR 313

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +DKA+ +  +M DK V+P+ +TYT++I G+  +  W E+ ++F +M  +G+ P +VTFN
Sbjct: 314 AMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFN 373

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
             M  LCK+G+  +A  +   M   G  PD  +Y+ LL G+   GR      LF SM   
Sbjct: 374 SFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADK 433

Query: 255 G 255
           G
Sbjct: 434 G 434



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 37/279 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T + ++A  +FD +LR   +P    + N  L  LA+     +       VL+LF R+   
Sbjct: 87  TFSTDDAHHLFDELLR-QGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICRE 145

Query: 66  GLFP-----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
              P      ++T+ IL++C C+  R   G     R+LR+      +   + +K      
Sbjct: 146 EAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAK 205

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVV 156
                            C P+AI+YNT+I  LC      +A ++  +M  +  +  P+VV
Sbjct: 206 RTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVV 265

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           ++ +VI GF    + ++A  L  EM+ +GV+P+VVT+N I+D LCK   MD+A  +L  M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  GV PD  TY  ++ G+  +G    + ++F  M S G
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKG 364



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K        +L   +   G+ PD+ T++ +++  CK   +    +V
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV 321

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +++     PD +T+T++I                     K   P  +T+N+ +  LCK
Sbjct: 322 LRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCK 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A+E+F  M  K   P++V+Y+ ++ G+     + +   LF  M D+G+  N   
Sbjct: 382 HGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHC 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++    K G MDEA  +   M   GVRPD  TY+TL+  FC  GR+  A E F  M 
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 253 SMG 255
           S+G
Sbjct: 502 SIG 504



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 57/275 (20%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS---------- 88
           FNI++   AK    D  + +F  +   G+ PD+ T+S LI+ FC+MGR++          
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 89  ---------------HGFVVLGRILRS-----------CFTPDVVTFTSLI-KVC----- 116
                          HGF + G ++++              P++V F+S+I  +C     
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561

Query: 117 ---------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                          +P  +T+N++IDG C  G ++KA  +   M    ++P+VVTY ++
Sbjct: 562 MDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + G+C +   ++   LF EM+ + V+P  VT+++++D L   G+   A  +   MI  G 
Sbjct: 622 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGT 681

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             D  TY  LL G C     + A  LF  + +M C
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDC 716



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 50/258 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN  +  L K+        +F+ + + G  PDL ++SIL++ +   GR    F  
Sbjct: 367 PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGR----FAD 422

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  S     +V           +   +N +I    K+G +D+A  +F +M+ + V+P
Sbjct: 423 MNNLFHSMADKGIVA----------NCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRP 472

Query: 154 NVVTYT-----------------------------------SVIRGFCYANDWNEAKRLF 178
           +VVTY+                                   S+I GFC   D  +AK L 
Sbjct: 473 DVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELV 532

Query: 179 IEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
            EMM +G+ +PN+V F+ I+  LC  G++ +A  + +L+I  G RP   T+N+L+DG+CL
Sbjct: 533 SEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCL 592

Query: 238 TGRVNHAKELFVSMESMG 255
            G++  A  +  +M S+G
Sbjct: 593 VGKMEKAFGVLDAMVSVG 610



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 29/263 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLS--LFKRLNSTGL-FPDLYT 73
           +A+  F  M+ +   P  V   +++ G C+    H D V +  L   + S G+  P++  
Sbjct: 492 DAMEKFSQMISIGLEPNTVVYHSLIHGFCM----HGDLVKAKELVSEMMSKGIPRPNIVF 547

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------------- 116
            S +I+  C  GRV     V   ++     P +VTF SLI   C                
Sbjct: 548 FSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 607

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +PD +TYNT++ G CK G +D    LF +M  K VKP  VTY+ V+ G  +A   +
Sbjct: 608 SVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTS 667

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            AK++F EM+D G   ++ T+ +++  LC+N   DEA +L   +     + D    NT++
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVI 727

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           +      R   A +LF ++ + G
Sbjct: 728 NALYKVRRREEANDLFAAISTSG 750



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++         +    +   + S G+ PD+ T++ L++ +CK G++  G ++
Sbjct: 578 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L               K  KP  +TY+ ++DGL   G    AK++F +M D     
Sbjct: 638 FREMLH--------------KKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAV 683

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY  +++G C  +  +EA  LF ++     + ++   N +++ L K  + +EA+ L 
Sbjct: 684 DIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLF 743

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +   G+ P+  TY  ++      G V  A  +F SME  GC
Sbjct: 744 AAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGC 786



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 22/245 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D M+ +   P  V ++N ++    K+   D  L LF+ +    + P   T+SI
Sbjct: 597 EKAFGVLDAMVSVGIEPD-VVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSI 655

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +++     GR S    +   ++ S    D+ T+  L+K                      
Sbjct: 656 VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 715

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CK D    NT+I+ L K    ++A +LF  +    + PNV TY  +I          EA 
Sbjct: 716 CKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEAD 775

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M   G  P+    N I+  L + G + +A   +  +    +  +A T + L+  F
Sbjct: 776 TMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLF 835

Query: 236 CLTGR 240
              G+
Sbjct: 836 SSKGK 840


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 25/264 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD-TVLSLFKRLNSTGLFPDLYTH 74
           P   L  F  +LR        ++ N +L CL   K  D  V  L +R+   G  PD +++
Sbjct: 24  PELGLAFFGRLLRTGLKADKTAA-NTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSY 82

Query: 75  SILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK----- 117
           +I++   C   R      +L  + +     +PDVVT+ ++I          K C      
Sbjct: 83  AIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEM 142

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD +T+N+II+ LCK   VD A+ L  +M D  V PN VTYTS+I G+     W
Sbjct: 143 MQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRW 202

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA ++F EM  +G+ P++V++N  MD LCK+G+  EA+ +   M   G RP+  TY  L
Sbjct: 203 EEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGIL 262

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           L G+   G        F +M+  G
Sbjct: 263 LHGYATEGCFADMMSFFNTMKGDG 286



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 24/251 (9%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M  +PP + ++ +++    + +  +  L+ F RL  TGL  D    + ++ C C   R  
Sbjct: 1   MRVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTD 60

Query: 89  HGF-VVLGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYN 124
               V+L R+      PD  ++  ++K                       VC PD +TYN
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYN 120

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+I G  K+G + KA  L+ +M  +   P+VVT+ S+I   C A   + A+ L  +M+D 
Sbjct: 121 TVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDN 180

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           GV PN VT+  ++      G+ +EA+ +   M   G+ PD  ++N+ +D  C  GR   A
Sbjct: 181 GVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEA 240

Query: 245 KELFVSMESMG 255
            E+F SM + G
Sbjct: 241 AEIFYSMAAKG 251



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K        +L+  +   G  PD+ TH+ +IN  CK   V +  ++
Sbjct: 114 PDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELL 173

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +++ +   P+ VT+TS+I                     +   PD +++N+ +D LCK
Sbjct: 174 LRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCK 233

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A E+F  M  K  +PN+VTY  ++ G+     + +    F  M   G+  N + 
Sbjct: 234 HGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLV 293

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F +++D   K G MDEA  +L  M   G+ PD FTY+TL+   C  GR+  A + F  M 
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMI 353

Query: 253 SMG 255
             G
Sbjct: 354 GTG 356



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 119/240 (49%), Gaps = 24/240 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F I++   AK    D  + +   +   GL PD++T+S LI+  C+MGR++       +++
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMI 353

Query: 99  RSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFV 136
            +   P+ V + SLI+                      + +P+   +N+I+  +CK+G V
Sbjct: 354 GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRV 413

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  +F  +KD   + +++ + ++I G+C   +  +A  +   M+  G+ P+  T+N +
Sbjct: 414 MDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++   K+G++D+  +L   M    ++P   TYN +LDG    GR   A+++   M  +GC
Sbjct: 474 VNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEM--IGC 531



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 57/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++  M+   +    ++    +F+ +   GL PD+ + +  ++  CK GR      
Sbjct: 183 PPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAE 242

Query: 93  VLGRILRSCFTPDVVTF----------------TSLIKVCKPDAITYN-----TIIDGLC 131
           +   +      P++VT+                 S     K D I  N      +ID   
Sbjct: 243 IFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYA 302

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G +D+A  +  +M+ + + P+V TY+++I   C      +A   F +M+  GVQPN V
Sbjct: 303 KRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTV 362

Query: 192 T------------------------------------FNVIMDELCKNGKMDEASSLLDL 215
                                                FN I+  +CK G++ +A  + DL
Sbjct: 363 VYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDL 422

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   G R D   +NTL+DG+CL G +  A  +  +M S G
Sbjct: 423 VKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG 462



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++ FN ++  + K         +F  +   G   D+   + LI+ +C +G +   F V
Sbjct: 395 PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSV 454

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ +   PD  TFT            YNT+++G  K G +D    LF +M DK +KP
Sbjct: 455 LDAMISAGIGPD--TFT------------YNTLVNGYFKSGRIDDGLNLFREMSDKKIKP 500

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
             VTY  ++ G   A     A+++  EM+  G   ++ T+N+I+  LC+N   DEA  + 
Sbjct: 501 TTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMF 560

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +    V+ +  T NT+++      R   AK+LF ++   G
Sbjct: 561 QKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSG 602



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---- 110
             S+   + S G+ PD +T++ L+N + K GR+  G  +   +      P  VT+     
Sbjct: 451 AFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILD 510

Query: 111 SLIKVCKPDAI-----------------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            L +  +  A                  TYN I+ GLC+    D+A  +F K+   NVK 
Sbjct: 511 GLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKF 570

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+ T  ++I          EAK LF  + D G+ PN  T+ +++  L K G ++EA ++ 
Sbjct: 571 NITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMF 630

Query: 214 DLMIQHGVRP 223
             M + G  P
Sbjct: 631 SSMEKSGCAP 640



 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA-KE 246
           P + T+ V+M+  C+  + +   +    +++ G++ D    NT+L   C T R + A K 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 247 LFVSMESMGC 256
           L   M  +GC
Sbjct: 66  LLRRMTELGC 75


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N+++  L      D    + K +  +G+ PD  T++ILIN +C+ G     F +
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNL 433

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++     P +VT+TSLI V                       PD I +N +IDG C 
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCA 493

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  L  +M  +N+ P+ VTY ++++G C      EA+ L  EM  +G++P+ ++
Sbjct: 494 NGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHIS 553

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    K G +++A ++ D M+  G  P   TYN L+ G C   + + A+EL   M 
Sbjct: 554 YNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMV 613

Query: 253 SMG 255
           S G
Sbjct: 614 SKG 616



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A   FD M++     P + +FN ML    K    +TV  L+  +    +   +YT +I
Sbjct: 183 DDAFECFD-MMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNI 241

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +IN  CK G++      +G +      P+VVT+ ++I                     + 
Sbjct: 242 MINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRG 301

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD+ TY ++I G+CK G +++A  +  KMK+  + P  VTY ++I G+C   D  +A 
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAF 361

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               EM+ + + P V T+N+++  L   GKMDEA  ++  M   G+ PD+ TYN L++G+
Sbjct: 362 GYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGY 421

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G    A  L   M S G
Sbjct: 422 CRCGNAKKAFNLHDEMISKG 441



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++  + K    +    + +++   GL P   T++ LI+ +C  G +   F  
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGY 363

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++R    P V T+  LI                         PD+ITYN +I+G C+
Sbjct: 364 RDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCR 423

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   KA  L  +M  K ++P +VTYTS+I      N    A  LF +++ +G  P+++ 
Sbjct: 424 CGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIM 483

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  C NG +D A +LL  M +  + PD  TYNTL+ G C  G+V  A+EL   M+
Sbjct: 484 FNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMK 543

Query: 253 SMG 255
             G
Sbjct: 544 RRG 546



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 14/201 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F++++    + K  D     F  +   G+ P + T + +++ F K+ +    +V+   + 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R             +K+ K    T+N +I+ LCK+G + KAK+    M++  VKPNVVTY
Sbjct: 229 R-------------LKI-KSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTY 274

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +VI G+C       A+ +   M ++GV+P+  T+  ++  +CK GK++EAS +L+ M +
Sbjct: 275 NTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKE 334

Query: 219 HGVRPDAFTYNTLLDGFCLTG 239
            G+ P A TYNTL+DG+C  G
Sbjct: 335 IGLLPTAVTYNTLIDGYCNKG 355



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +I ++ +I   C+    D A E F  MK+K V P + T+ +++  F   N       L+ 
Sbjct: 166 SIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYA 225

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM    ++  V TFN++++ LCK GK+ +A   +  M   GV+P+  TYNT++ G+C  G
Sbjct: 226 EMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRG 285

Query: 240 RVNHAKELFVSMESMG 255
           RV  A+ +   M++ G
Sbjct: 286 RVEGARMVLDIMKNRG 301



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 24/202 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L+K         LF+++   G  PDL   + LI+  C  G +   F +
Sbjct: 444 PTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFAL 503

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +    PD VT+ +L+                     +  +PD I+YNT+I G  K
Sbjct: 504 LKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSK 563

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A  +  +M      P ++TY ++I+G C     + A+ L  EM+ +G+ P+  T
Sbjct: 564 RGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDST 623

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
           +  +++ +   GK+D++S   D
Sbjct: 624 YFSLIEGI---GKVDDSSEASD 642


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 24/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-- 91
           P +++FNI +  L K    +    + + + + G  P++ T++ LI+  CK G     +  
Sbjct: 198 PNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRA 257

Query: 92  -VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
             +L  +L +   P+ +TF +LI                     +  KP+ +TYN++I+G
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLING 317

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L   G +D+A  L+ KM    +KPN+VT+ ++I GFC      EA++LF ++ +Q + PN
Sbjct: 318 LSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPN 377

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            +TFN ++D  CK G M+E  +L + M+  G+ P+  TYN L+ G C    V  AK+L  
Sbjct: 378 AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLN 437

Query: 250 SMES 253
            ME+
Sbjct: 438 EMEN 441



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++    K+++     + F+ +   GL P++ T++ LIN     G++     +
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIAL 330

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++     P++VTF +LI   CK                    P+AIT+NT+ID  CK
Sbjct: 331 WDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCK 390

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++   L   M D+ + PNV TY  +I G C   +   AK+L  EM +  ++ +VVT
Sbjct: 391 AGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVT 450

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++   CK+G+  +A  LL  M+  GV+P+  TYNTL+DG+C+ G +  A ++   ME
Sbjct: 451 YNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQME 510

Query: 253 SMG 255
             G
Sbjct: 511 KEG 513



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ M R     P + ++N ++  L+ N   D  ++L+ ++   GL P++ T + LIN FC
Sbjct: 296 FEEMQR-QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFC 354

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAI 121
           K   +     +   I      P+ +TF ++I   CK                    P+  
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN +I GLC+   V  AK+L  +M++  +K +VVTY  +I G+C   + ++A++L  EM
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM 474

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           ++ GV+PN VT+N +MD  C  G +  A  +   M + G R +  TYN L+ GFC TG++
Sbjct: 475 LNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKL 534

Query: 242 NHAKELFVSMESMG 255
             A  L   M   G
Sbjct: 535 EDANRLLNEMLEKG 548



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 26/245 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           ++S N +L  L K      +  ++K +    + P+L T +I IN  CK G+++    V+ 
Sbjct: 165 LNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIE 224

Query: 96  RILRSCFTPDVVTFTSLI-------------------------KVCKPDAITYNTIIDGL 130
            I    F+P++VT+ +LI                         K+C P+ IT+NT+IDG 
Sbjct: 225 DIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKIC-PNEITFNTLIDGF 283

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   V  AK  F +M+ + +KPN+VTY S+I G       +EA  L+ +M+  G++PN+
Sbjct: 284 CKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNI 343

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTFN +++  CK   + EA  L D + +  + P+A T+NT++D FC  G +     L  S
Sbjct: 344 VTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNS 403

Query: 251 MESMG 255
           M   G
Sbjct: 404 MLDEG 408



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 22/236 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ ++D M+ +   P  V+ FN ++    K K       LF  +    L P+  T + 
Sbjct: 325 DEAIALWDKMVGLGLKPNIVT-FNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+ FCK G +  GF +   +L     P+V T+  LI  +C                   
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D +TYN +I G CK G   KA++L  +M +  VKPN VTY +++ G+C   +   A 
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++  +M  +G + NVVT+NV++   CK GK+++A+ LL+ M++ G+ P+  TY+ +
Sbjct: 504 KVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 14/171 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N ++  L +N++      L   + +  L  D+ T++ILI  +CK G  S    +
Sbjct: 411 PNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKL 470

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           LG +L                  KP+ +TYNT++DG C +G +  A ++  +M+ +  + 
Sbjct: 471 LGEMLNVG--------------VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRA 516

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           NVVTY  +I+GFC      +A RL  EM+++G+ PN  T++V+  E+ + G
Sbjct: 517 NVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKG 567



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 62/104 (59%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +  A E+F +++D   K ++ +   ++      N+  E + ++ EM+ + +QPN+ TFN+
Sbjct: 146 IHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNI 205

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            ++ LCK GK+++A  +++ +   G  P+  TYNTL+DG C  G
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKG 249



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 43/80 (53%)

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  + D G + ++ + N ++  L K  +  E   +   MI+  ++P+  T+N  ++G 
Sbjct: 151 EVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGL 210

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G++N A+++   +++ G
Sbjct: 211 CKAGKLNKAEDVIEDIKAWG 230


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 135/248 (54%), Gaps = 32/248 (12%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVL 94
           V S+N M+        +   + L   +   G ++PD+YT +ILI+  CK+GRVS  + V+
Sbjct: 245 VYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVV 304

Query: 95  GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
             +++  + PD+V++ +L+                     +   P+ I+Y T+I+G CK 
Sbjct: 305 AVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKV 364

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN----DWNEAKRLFIEMMDQGVQP- 188
             VD+A  L  +M +KN+ P+ VTY  ++ G   +     +W+      +E M    QP 
Sbjct: 365 RMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWD-----LVEAMRASGQPA 419

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +++T+NV++D+  K+ K D+A +L   +I+ G+ P+  TYN LLDG C +GR+ +AKE+F
Sbjct: 420 DLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIF 479

Query: 249 VSMESMGC 256
             + + GC
Sbjct: 480 QLLSAKGC 487



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 15/218 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN +L  L K K Y+ V+SL+  L S   + P L T SILIN F ++G++   F +LG I
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L+  F  DV   T+L+K              GLC +G V +A  L  +  D+  + + V 
Sbjct: 132 LKMGFQIDVRILTTLMK--------------GLCLKGRVLEAVSLLHEYVDRGFRFDEVC 177

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I G C      +A ++F +M    V PN++ +N ++D LCK G +DEA  L   M+
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMV 237

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++G+  D ++YN+++ GFC  GR   A +L   M   G
Sbjct: 238 ENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  M ++   P  +  +N ++  L K    D    L   +   G+  D+Y+++ +
Sbjct: 193 DAIQMFPKMKKIRVYPNLIM-YNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 78  INCFCKMGRVSHGFVVLGR-ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           I+ FC +GR      +L   ++R    PDV TF              N +IDGLCK G V
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTF--------------NILIDGLCKLGRV 297

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  +   M  +  KP++V+Y +++ G+C +    EAK++F +M+++   PNV+++  +
Sbjct: 298 SEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTL 357

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK   +DEA  LL  M    + PD  TYN LLDG   +GR  +  +L  +M + G
Sbjct: 358 INGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASG 416



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 64/274 (23%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTH 74
           A+ + D M+      P V +FNI++  L K    ++ Y+ V  + KR    G  PD+ ++
Sbjct: 264 AVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR----GWKPDIVSY 319

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------- 117
           + L+N +C  G V     V  +++     P+V+++ +LI   CK                
Sbjct: 320 NALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHN 379

Query: 118 ----PDAITYNTIIDGLCKQGF-----------------------------------VDK 138
               PD +TYN ++DGL K G                                     DK
Sbjct: 380 KNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDK 439

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  LF  + +  + PN+ TY  ++ G C +     AK +F  +  +G QPN+ T+N+++ 
Sbjct: 440 ALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIH 499

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            LCK G +DEA +LL  M+ +   P+  T++T++
Sbjct: 500 GLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 78/138 (56%), Gaps = 14/138 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    P  + ++N++L    K++ +D  L+LF+ +   G+ P++ T++IL++  CK GR
Sbjct: 412 MRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGR 471

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +              +  ++    S  K C+P+  TYN +I GLCK+GF+D+A+ L  KM
Sbjct: 472 LK-------------YAKEIFQLLS-AKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKM 517

Query: 147 KDKNVKPNVVTYTSVIRG 164
            + N  PN +T+ +++R 
Sbjct: 518 VNNNYLPNYITFDTIVRA 535


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 21/224 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           + VL L + +   GL P+ YT++ +I   CK G+V+    VL  ++     PD V +T+L
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 113 IK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I   CK                    PD ITY  +I GLC+ G V +A +LF +M  K +
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P+ VTYT++I G+C      EA  L  +M+  G+ PN+VT+  + D LCK G++D A+ 
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LL  M + G+  + +TYN+L++G C  G ++ A +L   ME  G
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +FD M +   SP  ++   ++ G L +         LF  +    L PD  T++ 
Sbjct: 275 SSAYRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI-------------- 121
           LI+ +CK G++   F +  ++L+   TP++VT+T+L   +CK   +              
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 TYN++++GLCK G +D+A +L   M+     P+ VTYT+++  +C + +   A 
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+D+ +QP VVTFNV+M+  C +G +++   LL  M++ G+ P+A TYN+L+  +
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 513

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+   +    E++  M + G
Sbjct: 514 CIRNNMRATTEIYRGMCAKG 533



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           + P+P    ++N ++  L K         + + + S G+ PD   ++ LI+ FCK+G VS
Sbjct: 219 LKPNP---YTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 275

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLI------------------KVCK---PDAITYNTII 127
             + +   + +   +PD +T+T++I                   VCK   PD +TY  +I
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK+G + +A  L  +M    + PN+VTYT++  G C   + + A  L  EM  +G++
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            N+ T+N +++ LCK G +D+A  L+  M   G  PDA TY TL+D +C +  +  A EL
Sbjct: 396 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 455

Query: 248 FVSM 251
              M
Sbjct: 456 LRQM 459



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + ML+M  +P  V+ +  +   L K    DT   L   +   GL  ++YT++ L
Sbjct: 346 EAFSLHNQMLQMGLTPNIVT-YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------- 117
           +N  CK G +     ++  +  + F PD VT+T+L+   CK                   
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +T+N +++G C  G ++  ++L   M +K + PN  TY S+I+ +C  N+      
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTE 524

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++  M  +GV P+  T+N+++   CK   M EA  L   M+  G      +YN L+ GF 
Sbjct: 525 IYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFY 584

Query: 237 LTGRVNHAKELFVSMESMG 255
              +   A+ELF  M   G
Sbjct: 585 KRKKFLEARELFEQMRREG 603



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 21/219 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++  L K  + D  + L K +   G  PD  T++ L++ +CK   +     +L 
Sbjct: 398 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 457

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           ++L     P VVTF  L+                     K   P+A TYN++I   C + 
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +    E++  M  K V P+  TY  +I+G C A +  EA  L  +M+ +G    V ++N
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            ++    K  K  EA  L + M + G+  D   YN   D
Sbjct: 578 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 616



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++    K++       L +++    L P + T ++L+N FC  G +  G  +
Sbjct: 431 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 490

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCK 132
           L  +L     P+  T+ SLIK                 +C     PD  TYN +I G CK
Sbjct: 491 LKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 550

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A  L   M  K     V +Y ++I+GF     + EA+ LF +M  +G+  +   
Sbjct: 551 ARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREI 610

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           +N+  D     GKM+    L D  I+  +  D  T NT
Sbjct: 611 YNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 648


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 38/261 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      +    LF+ +   G+ PD+YT++ L++ FCK+G +      
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              + +    P+VVT+T+LI                       C P+ +TY  +IDG CK
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCK 239

Query: 133 QGFVDKAKELFLKMKDKNV-----------------KPNVVTYTSVIRGFCYANDWNEAK 175
            G  +KA +++ +MK+  V                 +PNVVTY +++ G C A+   EA+
Sbjct: 240 AGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR 299

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M  +G +PN + ++ ++D  CK GK+DEA  +   M+ HG  P+ +TY++L+D  
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 236 CLTGRVNHAKELFVSMESMGC 256
               R++ A ++   M    C
Sbjct: 360 FKDKRLDLALKVLTKMLENSC 380



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 41/259 (15%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F   L C+ K   ++   ++ + + S G  PD  T+S +I   C   +V   F +  
Sbjct: 90  VCNFTRCLCCIGK---FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQ 146

Query: 96  RILRSCFTPDVVTFTSLI----KV-----------------CKPDAITYNTIIDGLCKQG 134
            + R+  TPDV T+T+L+    KV                 C P+ +TY  +I    K  
Sbjct: 147 EMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTR 206

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-------- 186
            + +A E+F  M      PN+VTYT++I G C A +  +A +++  M +  V        
Sbjct: 207 KLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIY 266

Query: 187 ---------QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
                    +PNVVT+  ++D LCK  K+ EA  LL+ M   G  P+   Y+ L+DGFC 
Sbjct: 267 FRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCK 326

Query: 238 TGRVNHAKELFVSMESMGC 256
            G+++ A+E+F  M   GC
Sbjct: 327 VGKLDEAQEVFTKMLGHGC 345



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 124/237 (52%), Gaps = 4/237 (1%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M +     P V ++  ++    K +       +F+ + S G  P++ T++ LI+  C
Sbjct: 180 FDEM-QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 83  KMGRVSHGFVVLGRILRSCF-TPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQGFVDKA 139
           K G       +  R+       PDV  +  ++  ++ +P+ +TY  ++DGLCK   V +A
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           ++L   M  +  +PN + Y ++I GFC     +EA+ +F +M+  G  PNV T++ ++D+
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDK 358

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L K+ ++D A  +L  M+++   P+   Y  ++DG C  G+ + A  L + ME  GC
Sbjct: 359 LFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGC 415



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 20/226 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGRV 87
           P    +NI++G  C  ++     V+ L +R  +  L   +  + +       C C +G+ 
Sbjct: 44  PGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKF 103

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
              + V+  ++   F PD              + TY+ +I  LC    V+KA +LF +MK
Sbjct: 104 EKAYNVIREMMSKGFIPD--------------SSTYSKVIGYLCNASKVEKAFQLFQEMK 149

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
              + P+V TYT+++  FC      +A+  F EM   G  PNVVT+  ++    K  K+ 
Sbjct: 150 RNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLS 209

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            A+ + ++M+ +G  P+  TY  L+DG C  G    A +++  M++
Sbjct: 210 RANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKN 255



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 27/220 (12%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI- 121
           + G +P     + L++ +C+ G   + + +L +++   + P  V +  LI  +C  + + 
Sbjct: 4   TEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLP 63

Query: 122 ----------TYNTIID---------------GLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                      YN +++                LC  G  +KA  +  +M  K   P+  
Sbjct: 64  SMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSS 123

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY+ VI   C A+   +A +LF EM   G+ P+V T+  ++D  CK G +++A +  D M
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            Q G  P+  TY  L+  +  T +++ A E+F  M S GC
Sbjct: 184 QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGC 223



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 123/262 (46%), Gaps = 29/262 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  ML  H   P V +++ ++  L K+K  D  L +  ++      P++  ++ 
Sbjct: 331 DEAQEVFTKMLG-HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTE 389

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +++  CK+G+    + ++  +      P+VVT+T++I                     K 
Sbjct: 390 MVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKG 449

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ ITY  +I+  C  G +D A +L  +MK      ++  Y  VI GF  ++++  + 
Sbjct: 450 CAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASL 507

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF--TYNTLLD 233
            L  E+ + G  P +  + +++D   K G+++ A   L+L  +      A+  TY +L++
Sbjct: 508 GLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMA---LELHEELSSFSAAYQNTYVSLIE 564

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
              L  +V+ A +L+  M   G
Sbjct: 565 SLTLACKVDKAFKLYSDMTRRG 586



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G  P+ + FN ++   C++G    A  LL  M+  G +P    YN L+ G C T  
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICST-- 59

Query: 241 VNHAKELFVSMESMG 255
                E   SME +G
Sbjct: 60  -----EDLPSMEVIG 69


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 14/237 (5%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHSILINCF 81
           F  ML ++P P  +  FN++ G +AK++H+ T +SL K L+S G    D+ T +ILINC 
Sbjct: 64  FHRMLTLNPFPC-IQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCL 122

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCKQGFVDKAK 140
           C++ + + GF VLG + +    P +VT  ++   +C         I++GLCK G    A 
Sbjct: 123 CRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLC---------IVNGLCKIGDTSGAL 173

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E   KM  +N++PNVV Y +++ G C      EA  LF EM    V+PNVVT+N ++  L
Sbjct: 174 ESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGL 233

Query: 201 CKN-GKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C   G   E   L + M+ + G+ PD  T++ L++GFC  G +  A+ +   M  +G
Sbjct: 234 CGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIG 290



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 59/298 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSI 76
           EAL +F  M  ++  P  V+   ++ G   +   +   + LF  +    G+ PD+ T SI
Sbjct: 206 EALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSI 265

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
           L+N FCK G +     ++G ++R     +VVT+ SLI                       
Sbjct: 266 LVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREG 325

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           + C P  +TYN++I G CK   V+KA  L  +M  K + P+V T+TS+I GF        
Sbjct: 326 EGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLA 385

Query: 174 AKRLFIEMMDQGVQP-----------------------------------NVVTFNVIMD 198
           AK LFI M DQG  P                                   ++V +N+++D
Sbjct: 386 AKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLD 445

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +CK GK+++A  LL  ++  G++ D++T+N ++ G C  G ++ A+EL   M+  GC
Sbjct: 446 GMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGC 503



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 24/254 (9%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTV--LSLFKRLNSTGLFPDLYTHSILINCFC 82
           +M+R+      V+  +++ G   +N+  + V    L  R    G  P + T++ LI+ +C
Sbjct: 285 FMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVR-EGEGCLPSVVTYNSLIHGWC 343

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAI----------------- 121
           K+ +V+    +L  ++     PDV T+TSLI    +V KP A                  
Sbjct: 344 KVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQ 403

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T   ++DGL K     +A  LF  M+   +  ++V Y  ++ G C     N+A++L   +
Sbjct: 404 TCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFV 463

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G++ +  T+N+++  LC+ G +D+A  LL  M ++G  P+  +YN  + G      +
Sbjct: 464 LVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDI 523

Query: 242 NHAKELFVSMESMG 255
           + +++    M+  G
Sbjct: 524 SRSRKYLQIMKDKG 537



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 22/237 (9%)

Query: 18  EALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA+ +FD M+R      P V ++N ++    K K  +  +SL   +   GL PD++T + 
Sbjct: 313 EAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTS 372

Query: 77  LINCFCKMGR---VSHGFVVL---GR--ILRSCF------------TPDVVTFTSLIKV- 115
           LI  F ++G+       F+ +   G+  IL++C             +  +  F ++ K  
Sbjct: 373 LIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSG 432

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D + YN ++DG+CK G ++ A++L   +  K +K +  T+  +I+G C     ++A+
Sbjct: 433 LDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAE 492

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            L  +M + G  PN  ++NV +  L +   +  +   L +M   G   DA T   L+
Sbjct: 493 ELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLI 549



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +  ++L  L K       ++LF+ +  +GL  D+  ++I+++  CKMG+++    +
Sbjct: 400 PILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKL 459

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L              +K  K D+ T+N +I GLC++G +D A+EL  KMK+    P
Sbjct: 460 LSFVL--------------VKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPP 505

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
           N  +Y   ++G     D + +++    M D+G   +  T  +++  L  N
Sbjct: 506 NKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSAN 555


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 29/265 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +AL +FD +LR     P + S N  L  +A++     V S F R+   G   + P ++T+
Sbjct: 36  DALDVFDELLRRGIGAP-IRSLNGALADVARDNPAAAV-SRFNRMARAGASMVTPTVHTY 93

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
            ILI C C  GR+  GF  LG +++  F  + + F  L+K                    
Sbjct: 94  GILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMT 153

Query: 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYAND 170
              C P+  ++  I+ GLC +    +A EL   M D      PNVV+Y++VI G     D
Sbjct: 154 ELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGD 213

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            ++A   + EM+D+ + PNVV ++ I+  LCK   MD+A  + D M+++GV P+ FTY +
Sbjct: 214 PDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTS 273

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           L+ GFC +G++  A +    M S G
Sbjct: 274 LVHGFCSSGQLTEAIKFLEKMCSNG 298



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 26/235 (11%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKR-LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN +L  L  +K  D  + +  R +      P++++H+I++   C   R      +L  +
Sbjct: 128 FNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMM 187

Query: 98  LR---SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
                 C  P+VV+++++I                     +   P+ + Y++II  LCK 
Sbjct: 188 ADDGGGCL-PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKG 246

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +DKA E+  +M    V PN  TYTS++ GFC +    EA +   +M   GV+PNVVT+
Sbjct: 247 QAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTY 306

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  MD LCKNG+  EA  + D M++ G++PD  TY++LL G+ + G +     LF
Sbjct: 307 SSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLF 361



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++  L K    D   + ++ +    + P++  +S +I   CK   +     V
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVC----KPDAITYNTIIDGLCK 132
             R++++  TP+  T+TSL+                 K+C    +P+ +TY++ +D LCK
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A+++F  M  + +KP++ TY+S++ G+       E   LF  M+   +QP+   
Sbjct: 316 NGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYV 375

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++    K GK+DEA  +   M Q G++P+  TY+TL++G+C   R+ +A  LF  M 
Sbjct: 376 FNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMV 435

Query: 253 SMG 255
           S G
Sbjct: 436 SNG 438



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 132/263 (50%), Gaps = 26/263 (9%)

Query: 16  PNEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P++A   +  ML  R+ P+   V  ++ ++  L K +  D  + +  R+   G+ P+ +T
Sbjct: 214 PDKAYATYREMLDRRILPN---VVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFT 270

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------- 113
           ++ L++ FC  G+++     L ++  +   P+VVT++S +                    
Sbjct: 271 YTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMV 330

Query: 114 -KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            +  KPD  TY++++ G   +G + +   LF  M   +++P+   + ++I         +
Sbjct: 331 KRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVD 390

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  +F +M  QG++PN VT++ +++  CK  +M+ A +L   M+ +GV P+  TYN +L
Sbjct: 391 EAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIML 450

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G   TGR   AKE +V +   G
Sbjct: 451 QGLFRTGRTATAKEFYVQIIKSG 473


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N +L CL +    D  L  F+ +    + P+L T++I+I+  CK G++    VV
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   P+V+T   ++                     K C+PDA+TY ++I+GL +
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A +L+ +M D N  PN V YTS+IR F       +  +++ EM+  G  P+++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N  MD + K G++++  +L   +   G  PDA +Y  L+ G    G  + A ELF +M+
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 253 SMGC 256
             GC
Sbjct: 612 EQGC 615



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 15/235 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I++ MLR+  SP  +   N  + C+ K    +   +LF+ + + G  PD  +++ILI+  
Sbjct: 536 IYNEMLRLGCSPDLLL-LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G     + +               +T   + C  D   YNT+IDG CK G V+KA +
Sbjct: 595 VKAGFAHEAYELF--------------YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +MK K  +P VVTY SVI G    +  +EA  LF E   +G++ NVV ++ ++D   
Sbjct: 641 LLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA  +++ ++Q G+ P+ +T+N LLD       ++ A   F SM+ + C
Sbjct: 701 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKC 755



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M +     P V ++  ++  LAK    D    LF+   S G+  ++  +S 
Sbjct: 636 NKAYQLLEEM-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GR+   ++++  +++   TP+V T              +N ++D L K   +
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT--------------WNCLLDALVKAEEI 740

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A   F  MKD    PN +TY+ +I G C    +N+A   + EM  QG +PNV T+  +
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G + EA +L +   + G   D+  YN +++G     R + A  LF      GC
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 57/272 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  F  ++   A+    D  LSL   + S  L PD+  +++ I+CF K G+V   +    
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 96  RILRSCFTPDVVTFTSLIKV-CKPD--------------------AITYNTIIDG----- 129
            +  +    D VT+TS+I V CK D                    A  YNT+I G     
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 130 ------------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                                         L ++G VD+A + F +MK K+  PN+ TY 
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK-KDAIPNLSTYN 413

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +I   C A     A  +   M D G+ PNV+T N+++D LCK  ++D+A S+ + +   
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             RPDA TY +L++G    GRV+ A +L+  M
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 16/231 (6%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   +R     P  S++  ++G L+ ++  D +L+LF+++   G   +++  + LI  F 
Sbjct: 187 FIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA 246

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           + GRV     +L  +  +   PDVV               YN  ID   K G VD A + 
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPDVVL--------------YNVCIDCFGKAGKVDMAWKX 292

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELC 201
           F +MK   +  + VTYTS+I   C A+  NEA  LF E MDQ  Q P    +N ++    
Sbjct: 293 FHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELF-EHMDQNKQVPCAYAYNTMIMGYG 351

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             GK ++A SLL+   + G  P   +YN +L      G+V+ A + F  M+
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK 402



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 21/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  F +  R+        ++N +L  +A+ + ++ +  + + ++  G  P   T   
Sbjct: 111 NNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIE 170

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-------------- 122
           ++  F K  ++   F  +  + +  F P    +T+LI        +              
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  + T+I    ++G VD A  L  +MK  +++P+VV Y   I  F  A   + A 
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM   G+  + VT+  ++  LCK  +++EA  L + M Q+   P A+ YNT++ G+
Sbjct: 291 KXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350

Query: 236 CLTGRVNHAKELFVSMESMGC 256
            + G+   A  L       GC
Sbjct: 351 GMAGKFEDAYSLLERQRRKGC 371



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P  V ++N +L  L K +     L  F+ +      P+  T+SI
Sbjct: 706 DEAYLIMEELMQKGLTPN-VYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSI 764

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK+ + +  FV    + +  F              KP+  TY T+I GL K G +
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGF--------------KPNVFTYTTMISGLAKAGNI 810

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K K+K    +   Y ++I G   AN  ++A RLF E   +G      T  V+
Sbjct: 811 VEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVL 870

Query: 197 MDELCKNGKMDEASSLLDLM-----IQHGVR 222
           +D L K   +++A+ +  ++      QH  R
Sbjct: 871 LDSLHKAECIEQAAIVGAVLRETAKAQHAAR 901


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  ML M  +PP V ++   +  L K ++      + + +   GL P++YTH+ LI+  C
Sbjct: 231 FRRMLEMG-TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 289

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K+G     F +  ++++S                KP+  TY  +I G C++G + +A+ L
Sbjct: 290 KIGWTERAFRLFLKLIKS-------------SSYKPNVHTYTVMIGGYCREGKLARAEML 336

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
            ++M ++ +KPN  TYT++I G C    ++ A  L  +M  +G  PN+ T+N ++D  CK
Sbjct: 337 LVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCK 396

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            GK+ EA  +L +    G++ D  TY  L+   C  G + +A +LF  M   GC
Sbjct: 397 KGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGC 450



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V +   ++  L K    +    LF K + S+   P+++T++++I  +C+ G+++   +
Sbjct: 276 PNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEM 335

Query: 93  VLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLC 131
           +L R++     P+  T+T+LI   CK                    P+  TYN +IDG C
Sbjct: 336 LLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 395

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G + +A ++      + +K + +TYT +I   C       A  LF  M++ G  P++ 
Sbjct: 396 KKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIE 455

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  ++   C+  +M+E+    D  +  G+ P   TY +++ G+C  GR   A  +F  M
Sbjct: 456 AYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERM 515

Query: 252 ESMGC 256
              GC
Sbjct: 516 VQNGC 520



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 15/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H  P  V + N +L    +   +     +F  +   G+ PD  +   L+   C+ G+
Sbjct: 129 MRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGK 188

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V     +L  + R  F+ D  T T               ++  LC++G      E F +M
Sbjct: 189 VEEVDALLAAMWRYGFSLDNATCT--------------VVVRSLCEKGRFKDVSEFFRRM 234

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +    PNVV YT+ I G C      +A  +  EM+ +G++PNV T   ++D LCK G  
Sbjct: 235 LEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT 294

Query: 207 DEASSL-LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + A  L L L+     +P+  TY  ++ G+C  G++  A+ L V M   G
Sbjct: 295 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 344



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 14/192 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++G   K   +D    L  ++   G  P++YT++ +I+ FCK G++   + V
Sbjct: 347 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 406

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L           + T   L    K D ITY  +I   CKQG +  A +LF +M +    P
Sbjct: 407 L----------RMATSQGL----KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 452

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YTS+I  +C      E+++ F + +  G+ P   T+  ++   CK G+   A  + 
Sbjct: 453 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVF 512

Query: 214 DLMIQHGVRPDA 225
           + M+Q+G   D+
Sbjct: 513 ERMVQNGCFADS 524



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++    + G + +A ++ L+M+   +   V T   V+R       +  A+++F  M   G
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+  +F  ++   C+ GK++E  +LL  M ++G   D  T   ++   C  GR     
Sbjct: 169 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 228

Query: 246 ELFVSMESMG 255
           E F  M  MG
Sbjct: 229 EFFRRMLEMG 238


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N +L CL +    D  L  F+ +    + P+L T++I+I+  CK G++    VV
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   P+V+T   ++                     K C+PDA+TY ++I+GL +
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A +L+ +M D N  PN V YTS+IR F       +  +++ EM+  G  P+++ 
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N  MD + K G++++  +L   +   G  PDA +Y  L+ G    G  + A ELF +M+
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMK 611

Query: 253 SMGC 256
             GC
Sbjct: 612 EQGC 615



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 15/235 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I++ MLR+  SP  +   N  + C+ K    +   +LF+ + + G  PD  +++ILI+  
Sbjct: 536 IYNEMLRLGCSPDLLL-LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G     + +               +T   + C  D   YNT+IDG CK G V+KA +
Sbjct: 595 VKAGFAHEAYELF--------------YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +MK K  +P VVTY SVI G    +  +EA  LF E   +G++ NVV ++ ++D   
Sbjct: 641 LLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA  +++ ++Q G+ P+ +T+N LLD       ++ A   F SM+ + C
Sbjct: 701 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKC 755



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M +     P V ++  ++  LAK    D    LF+   S G+  ++  +S 
Sbjct: 636 NKAYQLLEEM-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GR+   ++++  +++   TP+V T              +N ++D L K   +
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT--------------WNCLLDALVKAEEI 740

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A   F  MKD    PN +TY+ +I G C    +N+A   + EM  QG +PNV T+  +
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G + EA +L +   + G   D+  YN +++G     R + A  LF      GC
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 57/272 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  F  ++   A+    D  LSL   + S  L PD+  +++ I+CF K G+V   +    
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 96  RILRSCFTPDVVTFTSLIKV-CKPD--------------------AITYNTIIDG----- 129
            +  +    D VT+TS+I V CK D                    A  YNT+I G     
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG 354

Query: 130 ------------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                                         L ++G VD+A + F +MK K+  PN+ TY 
Sbjct: 355 KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK-KDAIPNLSTYN 413

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +I   C A     A  +   M D G+ PNV+T N+++D LCK  ++D+A S+ + +   
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             RPDA TY +L++G    GRV+ A +L+  M
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 16/231 (6%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   +R     P  S++  ++G L+ ++  D +L+LF+++   G   +++  + LI  F 
Sbjct: 187 FIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA 246

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           + GRV     +L  +  +   PDVV               YN  ID   K G VD A + 
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPDVVL--------------YNVCIDCFGKAGKVDMAWKF 292

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELC 201
           F +MK   +  + VTYTS+I   C A+  NEA  LF E MDQ  Q P    +N ++    
Sbjct: 293 FHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELF-EHMDQNKQVPCAYAYNTMIMGYG 351

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             GK ++A SLL+   + G  P   +YN +L      G+V+ A + F  M+
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK 402



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 21/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  F +  R+        ++N +L  +A+ + ++ +  + + ++  G  P   T   
Sbjct: 111 NNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIE 170

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-------------- 122
           ++  F K  ++   F  +  + +  F P    +T+LI        +              
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  + T+I    ++G VD A  L  +MK  +++P+VV Y   I  F  A   + A 
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM   G+  + VT+  ++  LCK  +++EA  L + M Q+   P A+ YNT++ G+
Sbjct: 291 KFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350

Query: 236 CLTGRVNHAKELFVSMESMGC 256
            + G+   A  L       GC
Sbjct: 351 GMAGKFEDAYSLLERQRRKGC 371



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P  V ++N +L  L K +     L  F+ +      P+  T+SI
Sbjct: 706 DEAYLIMEELMQKGLTPN-VYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSI 764

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK+ + +  FV    + +  F              KP+  TY T+I GL K G +
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGF--------------KPNVFTYTTMISGLAKAGNI 810

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K K+K    +   Y ++I G   AN  ++A RLF E   +G      T  V+
Sbjct: 811 VEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVL 870

Query: 197 MDELCKNGKMDEASSLLDLM-----IQHGVR 222
           +D L K   +++A+ +  ++      QH  R
Sbjct: 871 LDSLHKAECIEQAAIVGAVLRETAKAQHAAR 901


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+ +  L          ++ K +   G+ PD  TH+ILIN +C+ G     F +L  +
Sbjct: 358 TYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEM 417

Query: 98  LRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCKQGFV 136
           +     P +VT+TSLI V                       PD I +N +IDG C  G +
Sbjct: 418 VGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNI 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +L  +M +  V P+ +TY ++++G+C      EA++L  EM  +G++P+ +++N +
Sbjct: 478 DRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTL 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +    K G M +A  + D M+  G  P   TYN L+ G C      HA+EL   M S G
Sbjct: 538 ISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKG 596



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 22/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PNEAL  F Y+++     P + + N ML    K         L+  +    +   LYT +
Sbjct: 162 PNEALECF-YLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFN 220

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           I+IN  CK G++      +G +      P+VVT+ ++I                     K
Sbjct: 221 IMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDK 280

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +PD  TYN+ I GLCK+G +++A  L  KM +  + PN VTY ++I G+C   D ++A
Sbjct: 281 GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKA 340

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
                EM+ +G+  ++VT+N+ +  L   G+M +A +++  M + G+ PDA T+N L++G
Sbjct: 341 YAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILING 400

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C  G    A  L   M   G
Sbjct: 401 YCRCGDAKRAFGLLDEMVGKG 421



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F++++    + K  +  L  F  +   G  P++ T + +++ F K+ R    +V+   + 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R      + TF              N +I+ LCK+G + KAKE    M+   VKPNVVTY
Sbjct: 209 RMNIRSSLYTF--------------NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTY 254

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I G C    +  A+ +F  M D+G++P+  T+N  +  LCK G+++EAS L+  M++
Sbjct: 255 NTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLE 314

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+ P+A TYN L+DG+C  G ++ A      M S G
Sbjct: 315 GGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N  +  L K    +    L  ++   GL P+  T++ LI+ +C  G +   +  
Sbjct: 284 PDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAY 343

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              ++       +VT+   I                     K   PDA+T+N +I+G C+
Sbjct: 344 RDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCR 403

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A  L  +M  K ++P +VTYTS+I      N   EA  LF ++  +G+ P+++ 
Sbjct: 404 CGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIV 463

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  C NG +D A  LL  M    V PD  TYNTL+ G+C  G+V  A++L   M+
Sbjct: 464 FNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK 523

Query: 253 SMG 255
             G
Sbjct: 524 RRG 526



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 107/201 (53%), Gaps = 14/201 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K        +LF ++   GL PD+   + LI+  C  G +   F +
Sbjct: 424 PTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQL 483

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +               +KV  PD ITYNT++ G C++G V++A++L  +MK + +KP
Sbjct: 484 LKEM-------------DNMKVL-PDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKP 529

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + ++Y ++I G+    D  +A R+  EMM  G  P ++T+N ++  LCKN + + A  LL
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELL 589

Query: 214 DLMIQHGVRPDAFTYNTLLDG 234
             M+  G+ PD  TY ++++ 
Sbjct: 590 KEMVSKGITPDDSTYLSIIEA 610



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
           VL L   L +     DL T S+ I    ++        ++ R++ S    +   F  L  
Sbjct: 77  VLHLLSHLQNHPHSLDLATSSLAICVLYRLPSPKPSINLIQRLILSPTCTNRTIFDELAL 136

Query: 114 ---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
              +V     + ++ ++   C+    ++A E F  +K+K   PN+ T   ++  F   N 
Sbjct: 137 ARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNR 196

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
              A  L+ EM    ++ ++ TFN++++ LCK GK+ +A   +  M   GV+P+  TYNT
Sbjct: 197 TQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNT 256

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++ G CL G+   A+ +F +M+  G
Sbjct: 257 IIHGHCLRGKFQRARVIFQTMKDKG 281



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ++     N + D    L K +++  + PD  T++ L+  +C+ G+V     +
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
           L  + R    PD +++ +LI                         P  +TYN +I GLCK
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
               + A+EL  +M  K + P+  TY S+I      +D
Sbjct: 579 NQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDD 616


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 22/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS +N ++  L K   Y     L + +   G+ P++ ++S LIN  C  G++   F  
Sbjct: 244 PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF 303

Query: 94  LGRILRSCFTPDVVTFTSLIKVC----------------------KPDAITYNTIIDGLC 131
           L ++L+    P++ T +SL+K C                      +P+ + YNT++ G C
Sbjct: 304 LTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFC 363

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
             G + KA  +F  M++    PN+ TY S+I GF      + A  ++ +M+  G  PNVV
Sbjct: 364 SHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVV 423

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +++ LC++ K  EA SL+++M +    P   T+N  + G C  GR++ A+++F  M
Sbjct: 424 VYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM 483

Query: 252 ES 253
           E 
Sbjct: 484 EQ 485



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 17/249 (6%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y ++     P V  +N +L  L        +  +++ +   G  P+++T+++L+   CK 
Sbjct: 135 YRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKN 194

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------PDAITYNTIID 128
            +V     +L  +      PD V++T++I  +C+               P    YN +I+
Sbjct: 195 NKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALIN 254

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK+     A EL  +M +K + PNV++Y+++I   C +     A     +M+ +G  P
Sbjct: 255 GLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           N+ T + ++      G   +A  L + MI+  G++P+   YNTL+ GFC  G +  A  +
Sbjct: 315 NIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSV 374

Query: 248 FVSMESMGC 256
           F  ME +GC
Sbjct: 375 FSHMEEIGC 383



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 22/256 (8%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T  +AL +++ M+R     P V ++N ++     + +    +S+F  +   G  P++ T+
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTY 390

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
             LIN F K G +     +  ++L S   P+VV +T++++                    
Sbjct: 391 GSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSK 450

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWN 172
             C P   T+N  I GLC  G +D A+++F +M+ ++   PN+VTY  ++ G   AN   
Sbjct: 451 ENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIE 510

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA  L  E+  +GV+ +  T+N ++   C  G    A  L+  M+  G  PD  T N ++
Sbjct: 511 EAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMII 570

Query: 233 DGFCLTGRVNHAKELF 248
             +C  G+   A ++ 
Sbjct: 571 LAYCKQGKAERAAQML 586



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 15/199 (7%)

Query: 55  VLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
            L  FK + ++ LF     T  ++I      G+V     +L ++    F      F S+I
Sbjct: 59  ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
            V +              + G  ++A E+F ++K+    P+V  Y  V+      N    
Sbjct: 119 SVYR--------------QVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              ++ +M   G +PNV T+NV++  LCKN K+D A  LL  M   G  PDA +Y T++ 
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224

Query: 234 GFCLTGRVNHAKELFVSME 252
             C  G V   +EL    E
Sbjct: 225 SMCEVGLVKEGRELAERFE 243



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  M + H  PP + ++N +L  LAK    +    L + +   G+     T++ L++  
Sbjct: 479 VFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGS 538

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C  G       ++G+++              +    PD IT N II   CKQG  ++A +
Sbjct: 539 CNAGLPGIALQLVGKMM--------------VDGKSPDEITMNMIILAYCKQGKAERAAQ 584

Query: 142 LF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           +   +    +  +P+V++YT+VI G C +N   +   L   M+  G+ P++ T++V+++
Sbjct: 585 MLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   +T+  +I  L   G VD  + L  +MK +    +   + SVI  +        A  
Sbjct: 73  KHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVE 132

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  + + G  P+V  +N ++D L    ++     +   M + G  P+ FTYN LL   C
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192

Query: 237 LTGRVNHAKELFVSMESMGC 256
              +V+ AK+L V M + GC
Sbjct: 193 KNNKVDGAKKLLVEMSNKGC 212


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 134/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R     P V + N ++G L K         +F  +   G  
Sbjct: 300 GYSSTGQWKEAVRVFKEM-RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     PD+ TF  LIK              
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KP  +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G++ ++V F  I++ LCK G++ +A ++ DL +  G+ PDA  
Sbjct: 479 HGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 538

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN L+DG+CL G++  A  +F +M S G
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAG 566



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 126/296 (42%), Gaps = 63/296 (21%)

Query: 16  PNEALCIFDYMLRMHPSP----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           P  A+ +F+        P    P   ++ I++ C  +    +  L+ F +L  TGL  D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 72  YTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK---------------- 114
              S L+  FC+  R      ++L R       PDV ++  L+K                
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLR 208

Query: 115 -------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                  VC PD + YNT+IDG  K+G V+KA +LF +M  + + P++VTY+SV+   C 
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK 268

Query: 168 A-----------------------------------NDWNEAKRLFIEMMDQGVQPNVVT 192
           A                                     W EA R+F EM  Q + P+VV 
Sbjct: 269 ARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVA 328

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            N +M  LCK GK+ EA  + D M   G  PD F+Y  +L+G+   G +    +LF
Sbjct: 329 LNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF 384



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+ IML   A       +  LF  +   G+ PD+YT ++L
Sbjct: 344 EARDVFDTMA-MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      P VVT+ ++I  +C+                   
Sbjct: 403 IKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   Y+ +I G C  G + KAKEL  ++ +  ++ ++V + S+I   C      +A+ 
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F   ++ G+ P+ V +N++MD  C  GKM++A  + D M+  G+ P+   Y TL++G+C
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++    LF  M   G
Sbjct: 583 KIGRIDEGLSLFREMLQKG 601



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 44  TLRPEEAHDLLDELQR-RGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASR 102

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  YT++IL++C  +  R        G++LR+    D +  + L+K      
Sbjct: 103 AQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAK 162

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +YN ++  LC QG   +A +L   M +      P+VV
Sbjct: 163 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVV 222

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P++VT++ ++  LCK   MD+A + L  M
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV PD +TYN L+ G+  TG+   A  +F  M 
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 318



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y +  
Sbjct: 413 DKAMIIFNEM-RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +     ++  I+ +    D+V F S              II+ LCK G V
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS--------------IINNLCKLGRV 517

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ +F    +  + P+ V Y  ++ G+C      +A R+F  M+  G++PNVV +  +
Sbjct: 518 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G++DE  SL   M+Q G++P    YN ++DG    GR   AK  F  M   G
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IFD  + +   P  V  +N+++         +  L +F  + S G+ P++  +  L
Sbjct: 519 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N +CK+GR+  G  +   +L+              K  KP  I YN IIDGL + G   
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQ--------------KGIKPSTILYNIIIDGLFEAGRTV 623

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK  F +M +  +  N  TY+ V+RG      ++EA  LF E+    V+ +++T N ++
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 683

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             + +  +++EA  L   + + G+ P A TY+ ++      G V  A+++F SM++ GC
Sbjct: 684 AGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGC 742



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD M+     P  V  +  ++    K    D  LSLF+ +   G+ P    ++I
Sbjct: 553 EKALRVFDAMVSAGIEPN-VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611

Query: 77  LINCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV- 115
           +I+   + GR                     ++  V+ G     CF   +  F  L  + 
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D IT NT+I G+ +   V++AK+LF  +    + P  VTY+ +I          EA+
Sbjct: 672 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAE 731

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M + G +P+    N ++ EL K  ++  A + L  + +     +  T   L+D F
Sbjct: 732 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 791

Query: 236 CLTG 239
              G
Sbjct: 792 SSKG 795



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I+L  L KN+ +D  + LFK L +  +  D+ T + +I    +  RV     +   I
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 702

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P           C   A+TY+ +I  L K+G V++A+++F  M++   +P+   
Sbjct: 703 SRSGLVP-----------C---AVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRL 748

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              V+R     N+   A     ++ ++      +T  +++D     G   E    L
Sbjct: 749 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL I++ M       P V ++N ++  L  +      +S+  ++   G  P++ T+  L
Sbjct: 337 EALNIWNRMAE-EGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGAL 395

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ F K G +     +  +++ +   P+VV +TS++ V                     C
Sbjct: 396 IDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC 455

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +T+NT I GLC  G V+ A  LF +M+     PN+ TY  V+ G    N   EA  
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALE 515

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM ++G++ N+VT+N I    C  GK +EA  LL  M+  GV+PDA TYNTL   +C
Sbjct: 516 LVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYC 575

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G+V  A +L   + + G
Sbjct: 576 MQGKVKTAIQLLDKLSAGG 594



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS +N ++    +      V  L  ++   G+ P++ T+S +I+    +G V     V
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
             ++     +P+V TFTSL+K                       +P+ + YNT+I GLC 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS 366

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  +  KM+     PNV TY ++I GF  A D   A  ++ +MM  G  PNVV 
Sbjct: 367 HGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVV 426

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +++ LC++    +A SL++ M      P+  T+NT + G C +GRV  A  LF  ME
Sbjct: 427 YTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQME 486

Query: 253 SMGC 256
             GC
Sbjct: 487 QYGC 490



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 23/258 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F Y +R     P V  +N +L  +     +  +  ++  +   G  P++YT++IL
Sbjct: 132 QALKMF-YRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNIL 190

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC----------------KPDAI 121
           +   CK  RV     +L  +      PDVV++T++I                   +P+  
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVS 250

Query: 122 TYNTIIDGLCKQGFVDKAKELFL---KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
            YN +I+G C++    K KE+FL   +M +K + PNV+TY++VI       +   A  ++
Sbjct: 251 VYNALINGFCRE---YKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVW 307

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M  +G  PNV TF  +M      G++ EA ++ + M + G  P+   YNTL+ G C  
Sbjct: 308 AKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSH 367

Query: 239 GRVNHAKELFVSMESMGC 256
           G++  A  +   ME  GC
Sbjct: 368 GKMGEAVSVSSKMERNGC 385



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 58/275 (21%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R +   P VS++  ++   AK         ++ ++ + G  P++  ++ +
Sbjct: 372 EAVSVSSKMER-NGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSM 430

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +N  C+    S  + ++ ++      P+ VTF + IK                      C
Sbjct: 431 VNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGC 490

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  TYN ++DGL K+  + +A EL  +M++K ++ N+VTY ++  GFC    + EA +
Sbjct: 491 SPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALK 550

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKM------------------------------ 206
           L  +M+  GV+P+ +T+N +    C  GK+                              
Sbjct: 551 LLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGI 610

Query: 207 ------DEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                 +EA   LD M+  G+  +A T+N L+ G 
Sbjct: 611 CNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 26/224 (11%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           +  L +F R+   G  P +  ++ L++      R      +   + R    P+V T+  L
Sbjct: 131 EQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNIL 190

Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +K                      C+PD ++Y T+I  + K G V++A+EL ++      
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRF----- 245

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +PNV  Y ++I GFC      E   L  +M+++G+ PNV+T++ ++  L   G ++ A +
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALA 305

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   M   G  P+ +T+ +L+ G+ + GRV  A  ++  M   G
Sbjct: 306 VWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEG 349



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-----YNTIIDGLCKQGFVDKAKELFLKM 146
           +++ ++ R C   DV     L++  K + I+     +  +I+   + G  ++A ++F ++
Sbjct: 84  IMIEKLGREC---DVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRI 140

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           ++   +P V  Y  ++      N +   + ++  M   G +PNV T+N+++  LCKN ++
Sbjct: 141 REFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRV 200

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           D A  LL  M   G  PD  +Y T++      G+V  A+EL +  +
Sbjct: 201 DGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ 246



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K  +   +TY  +I+ L ++  VD  + L  +MK + +  +   + +VI  +       +
Sbjct: 73  KAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQ 132

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A ++F  + + G QP V  +N ++D +    +      +   M + G  P+ +TYN LL 
Sbjct: 133 ALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLK 192

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C   RV+ A +L V M + GC
Sbjct: 193 ALCKNNRVDGACKLLVEMSNKGC 215


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P+ +   +L  L K K++  V   +K +   G    LY  +IL+  FCK G
Sbjct: 89  LTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEG 148

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +    +VL  I +    P VV+F +LI                        +PD  TY+
Sbjct: 149 DIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 208

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 209 VLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 268

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G++ +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 269 SLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETA 328

Query: 245 KE 246
            E
Sbjct: 329 FE 330



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 167 PSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 226

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P+ VTFT              T+IDG CK G VD A E++ +M  +++ P
Sbjct: 227 FDEMLDKGMVPNGVTFT--------------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 272

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +++TY ++I G C   +  +A  L  EM  +G++P+ +T+  ++D  CK G M+ A    
Sbjct: 273 DLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQ 332

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MIQ  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 333 KRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 374


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 132/234 (56%), Gaps = 15/234 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           ALC+FD M +     P + S N +L  L +N      L +++++ + G+ PD+++++I++
Sbjct: 205 ALCVFDNMGKC-GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV 263

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N +CK GRV   F  +  + RSC              C+P+ +TYN++IDG    G V  
Sbjct: 264 NAYCKEGRVDEAFNFVKEMERSC--------------CEPNVVTYNSLIDGYVSLGDVCG 309

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           AK++   M +K +  N  TYT +I+G+C      +A++LF  MM++ +  +   + V++ 
Sbjct: 310 AKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIH 369

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             C  G++D+A  + D M++ G++ +    N+L++G+C  G VN A E+ VSM+
Sbjct: 370 AYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMK 423



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P    ++ +++    K    +    LF  +    LF D + + +LI+ +C  GRV     
Sbjct: 323 PENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALR 382

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +L+                 K + +  N++I+G CK G V+KA E+ + MKD N+K
Sbjct: 383 IRDAMLKVGL--------------KMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+   Y +++ GFC   D+ +A +L  EM ++GV   VVT+N ++  L   G ++ A  +
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +LM + GV P+  TY TLLD F   G  + A  ++    S G
Sbjct: 489 WNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKG 531



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F+++L   A+       L +F  +   G  P L + + L++   + G      +V  +++
Sbjct: 189 FDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMI 248

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                PD+ ++T               +++  CK+G VD+A     +M+    +PNVVTY
Sbjct: 249 ALGILPDIFSYT--------------IMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTY 294

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            S+I G+    D   AK++   M ++G+  N  T+ +++   CK G+M++A  L   M++
Sbjct: 295 NSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMME 354

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +  D   Y  L+  +C  GRV+ A  +  +M  +G
Sbjct: 355 KNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVG 391



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 102 FTPDVVTFTSLIKVCK-----PDAITYNTIIDGLCKQGFVDKA--KELFLKMKDKNVKPN 154
           F PDV ++  ++ +        +   Y   +  LCK  ++  A   EL    ++ +  P 
Sbjct: 128 FRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSPT 187

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           V  +  +++ +        A  +F  M   G  P++ + N ++  L +NG+  +A  + +
Sbjct: 188 V--FDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYE 245

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            MI  G+ PD F+Y  +++ +C  GRV+ A      ME   C
Sbjct: 246 QMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCC 287


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 29/265 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTH 74
           +AL +FD +LR     P + S N  L  +A++     V S F R+   G   + P ++T+
Sbjct: 36  DALDVFDELLRRGIGAP-IRSLNGALADVARDNPAAAV-SRFNRMARAGASMVTPTVHTY 93

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------- 114
            ILI C C  GR+  GF  LG +++  F  + + F  L+K                    
Sbjct: 94  GILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMT 153

Query: 115 --VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIRGFCYAND 170
              C P+  ++  I+ GLC +    +A EL   M D      PNVV+Y++V  G     D
Sbjct: 154 ELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGD 213

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            ++A   + EM+D+ + PNVVT++ I+  LCK   MD+A  + D M+++GV P+ FTY +
Sbjct: 214 PDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTS 273

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           L+ GFC +G++  A +    M S G
Sbjct: 274 LVHGFCSSGQLTEAIKFLEKMCSNG 298



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 26/235 (11%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKR-LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN +L  L  +K  D  + +  R +   G  P++++H+I++   C   R      +L  +
Sbjct: 128 FNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMM 187

Query: 98  LR---SCFTPDVVTFTS----LIKVCKPD-----------------AITYNTIIDGLCKQ 133
                 C  P+VV++++    L+K   PD                  +TY++II  LCK 
Sbjct: 188 ADDGGGCL-PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKG 246

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +DKA E+  +M    V PN  TYTS++ GFC +    EA +   +M   GV+PNVVT+
Sbjct: 247 QAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTY 306

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  MD LCKNG+  EA  +   M++ G++PD  TY++LL G+ + G +     LF
Sbjct: 307 SSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLF 361



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ +   L K    D   + ++ +    + P++ T+S +I   CK   +     V
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEV 255

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVC----KPDAITYNTIIDGLCK 132
             R++++  TP+  T+TSL+                 K+C    +P+ +TY++ +D LCK
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A+++F  M  + +KP++ TY+S++ G+       E   LF  M+   +QP+   
Sbjct: 316 NGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYV 375

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++    K GK+DEA  +   M   G++P+  TYNTL++G+C   R+ +A  LF  M 
Sbjct: 376 FNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMV 435

Query: 253 SMG 255
           S G
Sbjct: 436 SNG 438



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 39/153 (25%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M++    P     FN ++   AK    D  + +F ++   GL P+  T++ LIN +
Sbjct: 360 LFDLMVQSDMQPDHYV-FNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGY 418

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK+ R+ +   +   ++ +  +P+               ITYN ++ GL + G    AKE
Sbjct: 419 CKITRMENALALFQEMVSNGVSPNF--------------ITYNIMLQGLFRTGRTGTAKE 464

Query: 142 LFLK------------------------MKDKN 150
            +++                        M+D +
Sbjct: 465 FYVQIIKSGKKDLIEQGLLEELDDLFLSMEDND 497


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L + +++  V   +K +   G    LY  +IL+  FCK G
Sbjct: 91  LTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +LI                        +PD  TY+
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+G +D+A ELF +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ P+++T+N ++  LCK G++ +   L+D MI +G++PD  +Y TL+DG C  G +  A
Sbjct: 271 GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIA 330

Query: 245 KEL 247
            EL
Sbjct: 331 LEL 333



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   ++++G  PD+YT+SILIN  CK G++     +
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +  +L  +M    +KP+ ++YT++I G C   D   A  L  +M+ + ++ + V 
Sbjct: 289 KGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC       A +L   M+
Sbjct: 349 YTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V +++I++  L K    D    LF  +   GL P+  T + LI+  CK  +
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNT 125
           V     +  ++L    +PD++T+ +LI  +CK                    PD I+Y T
Sbjct: 257 VDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A EL  KM  ++++ + V YT++I   C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +I++E CK      AS LL  M + G  P   T
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 81/133 (60%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N ++   CK+G +  A+ +F  +    ++P+VV++ ++I G+    D +E  RL   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             G QP+V T++++++ LCK GK+DEA+ L + M+ +G+ P+  T+ TL+ G C   +V+
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVD 258

Query: 243 HAKELFVSMESMG 255
            A E++  M S G
Sbjct: 259 LAMEIYKQMLSQG 271



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D   ++ ++    + GFV  A + F   K   ++    T   V+        +      +
Sbjct: 65  DFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFY 124

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            E+++ G   ++  FN++M   CK G+M  A S+ D + + G+RP   ++NTL++G+   
Sbjct: 125 KEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKL 184

Query: 239 GRVNHAKELFVSMESMGC 256
           G ++    L  +M + G 
Sbjct: 185 GDLDEGFRLKSAMHASGA 202


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 131/276 (47%), Gaps = 56/276 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++ +++     +   D V  +F+ +   G+  D++ ++++IN  CK+G     F +  
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQG 134
            +       +V T+ +LI  VCK                     + + YNT+IDG CK+G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 135 FVDKA-----------------------------------KELFLKMKDKNVKPNVVTYT 159
            +D+A                                   K   L M +K V PNVV+YT
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           ++I  +C   ++ EAK+LF EM   G +PN VT+NV++D   K G+M EA  L D M   
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G+ PD +TY +LL G C+ G+++ A ELF  +   G
Sbjct: 241 GIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKG 276



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    K    D    +   +   G   D+YT + + +   K+ +       L  ++
Sbjct: 109 YNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMI 168

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VV++T+LI + CK                    P+A+TYN +IDG  K+G + 
Sbjct: 169 EKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMK 228

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A EL  +M+ K + P++ TYTS++ G C     ++A  LF E+  +G+  NVVT+  I+
Sbjct: 229 EAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAII 288

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K G+ +EA  L D M + G+ PD   Y +L+
Sbjct: 289 SGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLV 323



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++  ++  + K    +    L   + + GL  +   ++ LI+ +CK G +   F V  
Sbjct: 71  VHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQV 130

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + +  F  D+ T  ++                      K   P+ ++Y T+ID  CK+G
Sbjct: 131 IMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEG 190

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +AK+LF +MK    +PN VTY  +I G        EA  L  EM  +G+ P++ T+ 
Sbjct: 191 NFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYT 250

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++   C  GK+D+A  L + + Q G+  +  TY  ++ G    GR   A +L+  M   
Sbjct: 251 SLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEA 310

Query: 255 G 255
           G
Sbjct: 311 G 311



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++    K  ++     LF+ +   G  P+  T+++LI+   K GR+   + +
Sbjct: 174 PNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYEL 233

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +      PD+ T+TSL+               G C  G +D A ELF +++ K +  
Sbjct: 234 RDEMRAKGIFPDIYTYTSLLH--------------GECIFGKLDDAVELFNEVRQKGLPL 279

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           NVVTYT++I G        EA +L+ EM + G+ P+   +  ++  L K
Sbjct: 280 NVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 23/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
           NEA+ +F  M +     P V +FN +L  L K    +   S+F  +  T G+ PD YT +
Sbjct: 114 NEAIKLFSLM-KSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFN 172

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FCK   V  GF          F  ++  F      C+PD +TYNT++DGLC+ G 
Sbjct: 173 ILIRGFCKNSMVDEGFR---------FFKEMSRFN-----CEPDVVTYNTLVDGLCRAGK 218

Query: 136 VDKA----KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           V  A    K +  KMKD  + P+VVTYT+++RG+C   + +EA  +F EM+ +G++PN +
Sbjct: 219 VRIAHNVVKGMVKKMKD--LSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDI 276

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           T+N ++  LC+  K D+   +L   +   G  PD  TYNTL++  C  G  + A ++F  
Sbjct: 277 TYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKK 336

Query: 251 MESM 254
           M+ +
Sbjct: 337 MKEL 340



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 129/301 (42%), Gaps = 67/301 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +FD M   +   P   +FNI++    KN   D     FK ++     PD+ T++ 
Sbjct: 149 NMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNT 208

Query: 77  LINCFCKMG--RVSH-----------------------------------GFVVLGRILR 99
           L++  C+ G  R++H                                     VV   ++ 
Sbjct: 209 LVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVS 268

Query: 100 SCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQGFVD 137
               P+ +T+ +LIK +C+                     PD  TYNT+++  C  G  D
Sbjct: 269 RGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFD 328

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF-------IEMMDQGVQPNV 190
           +A ++F KMK+  V+P+  TY+ +IR  C   D+  A++LF       I + D G  P V
Sbjct: 329 EALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLV 388

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
             +N I D LCKNGK  +A  +   +++ G + D  +Y TL+ G C  G      +L + 
Sbjct: 389 AAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLLF 447

Query: 251 M 251
           M
Sbjct: 448 M 448



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 20/262 (7%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           E  + +++P+ +   F  +LR   SPP    F       ++N       S F  L+  G 
Sbjct: 15  ESSLFSLSPSISKTTFFQVLRFIASPPKAFEF---FNWASRNGFAHDSRSYFMMLDILGR 71

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVL-----GRILRSCFTP----DVVTFTSLIKVC-- 116
             +L   +I  N    + R S+G V +       +LRS        + +   SL+K    
Sbjct: 72  NGNL---NIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGV 128

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            P  IT+N+++  L K+G  + A  +F +M     V P+  T+  +IRGFC  +  +E  
Sbjct: 129 SPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGF 188

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH--GVRPDAFTYNTLLD 233
           R F EM     +P+VVT+N ++D LC+ GK+  A +++  M++    + PD  TY TL+ 
Sbjct: 189 RFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVR 248

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C+   ++ A  +F  M S G
Sbjct: 249 GYCMKQEIDEALVVFEEMVSRG 270



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 4/142 (2%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAK 175
           D+ +Y  ++D L + G ++ A+     ++ ++   VK       +++R +  A  +NEA 
Sbjct: 58  DSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAI 117

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDG 234
           +LF  M   GV P+V+TFN ++  L K G+ + A S+ D M   +GV PD +T+N L+ G
Sbjct: 118 KLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRG 177

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC    V+     F  M    C
Sbjct: 178 FCKNSMVDEGFRFFKEMSRFNC 199



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 27/218 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++       ++D  L +FK++    + PD  T+S+LI   C+ G       +
Sbjct: 309 PDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQL 368

Query: 94  LGRI--------------LRSCFTP--DVV-----------TFTSLIKVCKPDAITYNTI 126
             ++              L + + P  D +            F  L+K    D  +Y T+
Sbjct: 369 FDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTL 428

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I G CK+G  +   +L L M  ++  P+  TY  +I GF    +   A +    M+    
Sbjct: 429 IIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSY 488

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            P    F+ I+ EL KN    E++S + LMI   +R +
Sbjct: 489 LPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQN 526



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 25/246 (10%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           D +LR     P V+++N +   L KN        +F++L   G   D  ++  LI   CK
Sbjct: 376 DILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGT-QDPPSYKTLIIGHCK 434

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAIT 122
            G    G+ +L  +LR  + PD  T+  LI                 ++ K    P    
Sbjct: 435 EGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSV 494

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +++I+  L K  F  ++    + M D+ ++ N+   T  +R    +    +A ++   + 
Sbjct: 495 FHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLY 554

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           D G    +V    ++  +C+NGK+ +A  +L   ++ G   D    N +++G C   R  
Sbjct: 555 DNGY---MVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPL 611

Query: 243 HAKELF 248
            A  L+
Sbjct: 612 EAFGLY 617


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M R       +  +  ++  L K +     + L +R+ S     + +T+ ++
Sbjct: 27  DALELFDKMTR-SGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLV 85

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK G    G  +   ++              + +C P+ I Y+++I+GLC+ G + 
Sbjct: 86  IDSLCKDGLAIKGLKMFREMIN-------------MGIC-PNVIVYSSLINGLCRVGKLR 131

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF +M  + +K NV+TY S+I   C    W EA R F +M+ +G+ P+VVTF  ++
Sbjct: 132 EAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLI 191

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D L K GK+ EA  + +LMI+ G  P+  TYN+LL+G CL  +++HA  LF  M   G
Sbjct: 192 DHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERG 249



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 22/258 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  IF+ M++     P + ++N +L  L  +   D  + LF+ +   G+  D+ +++ 
Sbjct: 201 QEAYKIFELMIK-QGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-------------------VC- 116
           LIN +C  G+      +  ++     TP + T+T L+K                   +C 
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TY  ++DGLCK G +++A ++F  +K    KP++  Y+ +I G   A  W  A 
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAM 379

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F E+   G+ PN+VT+N++++ LCK GK+ EA  L   M + G   D  ++N ++ GF
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGF 439

Query: 236 CLTGRVNHAKELFVSMES 253
               +V  A E    M  
Sbjct: 440 LQENQVQKAMEFLKRMRE 457



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L K+      L +F+ + + G+ P++  +S LIN  C++G++     +   +
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 98  LRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFV 136
           +      +V+T+ SLI   C+                    PD +T+ T+ID L K+G V
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ++F  M  +   PN+VTY S++ G C  +  + A RLF  M+++G++ +V+++N +
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C +GK +EA +L   M    + P   TY  LL      GR+  AKELF +M+  G
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 57/295 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +FD M+        V ++N ++    +   +      F ++   G+ PD+ T + L
Sbjct: 132 EAVNLFDEMVS-QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTL 190

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+   K G+V   + +   +++    P++VT+ SL+                     +  
Sbjct: 191 IDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGI 250

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D I+YNT+I+G C  G  ++A  LF KM+ + + P++ TYT +++          AK 
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKE 310

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA-------------------SSLLDLMI 217
           LF  M   G  P++ T+ V++D LCKNG ++EA                   S L+  M 
Sbjct: 311 LFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMF 370

Query: 218 QH----------------GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           Q                 G+ P+  TYN +++G C  G++  A+ LFV ME  GC
Sbjct: 371 QARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGC 425



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 22/258 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           + L +F  M+ M   P  +   +++ G     K  + V +LF  + S G+  ++ T++ L
Sbjct: 97  KGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAV-NLFDEMVSQGIKANVITYNSL 155

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK------------- 117
           I+  C+ G          +++     PDVVTFT+LI       KV +             
Sbjct: 156 IHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGE 215

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ +TYN++++GLC    +D A  LF  M ++ +K +V++Y ++I G+C +    EA  
Sbjct: 216 APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMT 275

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M  + + P++ T+ +++  L +NG++  A  L + M   G  P   TY  LLDG C
Sbjct: 276 LFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLC 335

Query: 237 LTGRVNHAKELFVSMESM 254
             G +  A ++F S++S+
Sbjct: 336 KNGCIEEAIDVFRSLKSI 353



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+ +T +T++ G+C +G V  A ELF KM     + +++ Y  +I           A  
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+ +    N  T+ +++D LCK+G   +   +   MI  G+ P+   Y++L++G C
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125

Query: 237 LTGRVNHAKELFVSMESMG 255
             G++  A  LF  M S G
Sbjct: 126 RVGKLREAVNLFDEMVSQG 144



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           M  G QPN+VT + ++  +C  GK+ +A  L D M + G + D   Y  L++    T + 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 242 NHAKELFVSMESMGC 256
             A EL   M S  C
Sbjct: 61  RRAVELHRRMLSEIC 75


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 30/257 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNI---------MLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           EAL + D M+     P  +   +I         ++  L K+ ++    +LF  ++  G+F
Sbjct: 28  EALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIF 87

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---- 117
           P++ T++ +I+ FC  GR S    +L  ++     PD+VTF++LI       KV +    
Sbjct: 88  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 147

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     P  ITYN++IDG CKQ  VD AK +   M  K   P+VVT++++I G+C 
Sbjct: 148 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 207

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   +    +F EM  +G+  N VT+  ++   C+ G +D A  LL+ MI  GV PD  T
Sbjct: 208 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYIT 267

Query: 228 YNTLLDGFCLTGRVNHA 244
           ++ +L G C    +  A
Sbjct: 268 FHCMLAGLCSKKELRKA 284



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 109/193 (56%), Gaps = 4/193 (2%)

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
            TG  P++ T + L+N  C+ GRV     ++ R++     P+ +  + +    K D +  
Sbjct: 3   ETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHI----KADVVIS 58

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
             I+D LCK G    A+ LF +M +K + PNV+TY  +I  FC++  W++A +L   M++
Sbjct: 59  TAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIE 118

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           + + P++VTF+ +++   K  K+ EA  +   M++  + P   TYN+++DGFC   RV+ 
Sbjct: 119 KQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDD 178

Query: 244 AKELFVSMESMGC 256
           AK +  SM S GC
Sbjct: 179 AKRMLDSMASKGC 191



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+     +  +     L + +    + PD+ T S LIN F K  +VS    +
Sbjct: 88  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 147

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +LR    P  +T+ S+I                     K C PD +T++T+I+G CK
Sbjct: 148 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 207

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   E+F +M  + +  N VTYT++I GFC   D + A+ L  EM+  GV P+ +T
Sbjct: 208 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYIT 267

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           F+ ++  LC   ++ +A ++L+ + +  V P
Sbjct: 268 FHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----------VVTFNV 195
           M +   +PNVVT+ +++   C      EA  L   M+++G QPN          VV    
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           I+D LCK+G    A +L   M + G+ P+  TYN ++D FC +GR + A +L   M
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHM 116



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 10/85 (11%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN----------T 230
           M++ G +PNVVTFN +M+ LC+ G++ EA +L+D M++ G +P+A   +           
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  C  G   +A+ LF  M   G
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKG 85


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L + +++  V   +K +   G    LY  +IL+  FCK G
Sbjct: 91  LTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +LI                        +PD  TY+
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+G +D+A ELF +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ P+++T+N ++  LCK G++ +   L+D MI +G++PD  +Y TL+DG C  G +  A
Sbjct: 271 GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIA 330

Query: 245 KEL 247
            EL
Sbjct: 331 LEL 333



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   ++++G  PD+YT+SILIN  CK G++     +
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +  +L  +M    +KP+ ++YT++I G C   D   A  L  +M+ + ++ + V 
Sbjct: 289 KGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC       A +L   M+
Sbjct: 349 YTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V +++I++  L K    D    LF  +   GL P+  T + LI+  CK  +
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNT 125
           V     +  ++L    +PD++T+ +LI  +CK                    PD I+Y T
Sbjct: 257 VDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A EL  KM  ++++ + V YT++I   C     ++A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +I++E CK      AS LL  M + G  P   T
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 81/133 (60%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N ++   CK+G +  A+ +F  +    ++P+VV++ ++I G+    D +E  RL   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             G QP+V T++++++ LCK GK+DEA+ L + M+ +G+ P+  T+ TL+ G C   +V+
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVD 258

Query: 243 HAKELFVSMESMG 255
            A E++  M S G
Sbjct: 259 LAMEIYKQMLSQG 271



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 65/140 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ ++    + GFV  A + F   K   ++    T   V+        +     
Sbjct: 63  RSDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWD 122

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK G+M  A S+ D + + G+RP   ++NTL++G+ 
Sbjct: 123 FYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G ++    L  +M + G 
Sbjct: 183 KLGDLDEGFRLKSAMHASGA 202


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 20/235 (8%)

Query: 25  YMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++ R  PS    P    S+  +L  L  + H     SL   + + G  P   T+++L+  
Sbjct: 123 HLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKA 182

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C    V     V  R+ R+              + KPDA +YNT+IDGLC++G + +A+
Sbjct: 183 HCSDAAVPIDDAV--RVFRN--------------IPKPDACSYNTVIDGLCRRGRLPEAR 226

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M      P VVTYT++I        +++A +LF EM  +G+ PNVVT++ ++D L
Sbjct: 227 DLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGL 286

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+   A  LLD M++    P+  TY++++DG C  G +  A E+   M   G
Sbjct: 287 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQG 341



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 34/252 (13%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  +++N+++   C       D  + +F+ +      PD  +++ +I+  C+ GR+    
Sbjct: 171 PTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRRGRLPEAR 226

Query: 92  VVLGRILRSCFTPDVVTFTSLI-----KVC----------------KPDAITYNTIIDGL 130
            +   ++ +   P VVT+T+LI     + C                 P+ +TY+++IDGL
Sbjct: 227 DLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGL 286

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G    A EL  +M  +   PN +TY+SVI G C      +A  +   M  QG +P+ 
Sbjct: 287 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 346

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             F  ++  LC  G+  EAS+ LD M   G+RP+  T+       + ++   C  G V  
Sbjct: 347 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVR 406

Query: 244 AKELFVSMESMG 255
           A +++ SM + G
Sbjct: 407 AFQVYQSMRTRG 418


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 133/239 (55%), Gaps = 19/239 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
            E++ +F+ M  +  SP  V +FN +L  L K    +   S+F  + ST G+ PD YT +
Sbjct: 173 QESVQVFNSMKSVGVSPS-VVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFN 231

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FCK   V  GF          F  ++  F      C PD +TYNT++DGLC+ G 
Sbjct: 232 ILIRGFCKNSMVDEGFR---------FFKEMSRFK-----CDPDLVTYNTLVDGLCRAGK 277

Query: 136 VDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V+ A  +   M  K  N+ P+VVTYT+++RG+C  ++ +EA  +F EM+ +G++PN +T+
Sbjct: 278 VNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITY 337

Query: 194 NVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           N ++  LC+  K+D+   + +  +   G  PD  T NTL++  C  G +N A E+F  M
Sbjct: 338 NTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKM 396



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 13/233 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +FD ML  +   P   +FNI++    KN   D     FK ++     PDL T++ 
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT 267

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  C+ G+V+    V+  +++          T+L     PD +TY T++ G C +  +
Sbjct: 268 LVDGLCRAGKVNIAHNVVNGMVKKS--------TNL----NPDVVTYTTLVRGYCMKHEI 315

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVVTFNV 195
           D+A  +F +M  K +KPN +TY ++I+G C     ++ K++F   +   G  P+  T N 
Sbjct: 316 DEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNT 375

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +M+  C  G +++A  + + M+   VRPD+ TY+ L+   C  G    A++LF
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLF 428



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N++I    K G   ++ ++F  MK   V P+VVT+ S++         N A+ +F EM+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218

Query: 183 DQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
              GV P+  TFN+++   CKN  +DE       M +    PD  TYNTL+DG C  G+V
Sbjct: 219 STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKV 278

Query: 242 NHAKELFVSM 251
           N A  +   M
Sbjct: 279 NIAHNVVNGM 288



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           + S+IR +  A  + E+ ++F  M   GV P+VVTFN ++  L K G+ + A S+ D M+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218

Query: 218 Q-HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +GV PD +T+N L+ GFC    V+     F  M    C
Sbjct: 219 STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKC 258



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 95/215 (44%), Gaps = 23/215 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFP 69
           N+AL +F+ M+ ++  P   +++++++  L +  +++    LF  L+         G  P
Sbjct: 387 NDALEVFEKMMVLNVRPDS-ATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTP 445

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
            +  +  +    C+ G+ +    V               F  L+K    D +++  +I G
Sbjct: 446 LVAAYKSMFEFLCRNGKTAKAERV---------------FRQLMKRGTQDPLSFKILIKG 490

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            C++G  +   EL + M  ++  P++ TY S+I G     +   A +   +M+     P 
Sbjct: 491 HCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPE 550

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
             TF+ I+  L   G   E++  + LM++  +R +
Sbjct: 551 TSTFHSILARLLAKGCAHESARFIMLMLEGKIRQN 585



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 15/197 (7%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           + +LR     P V+++  M   L +N        +F++L   G   D  +  ILI   C+
Sbjct: 435 EILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGT-QDPLSFKILIKGHCR 493

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
            G    G+ +L  +LR  F PD+ T+ SLI              DGL ++G    A +  
Sbjct: 494 EGTFEAGYELLVLMLRRDFVPDLETYQSLI--------------DGLLQKGEPLVAYQTL 539

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            KM   +  P   T+ S++         +E+ R  + M++  ++ N+      +  L  +
Sbjct: 540 EKMIKSSHVPETSTFHSILARLLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGS 599

Query: 204 GKMDEASSLLDLMIQHG 220
           G  D+A  ++ L+  +G
Sbjct: 600 GLRDKAFKIVGLLYANG 616


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 20/235 (8%)

Query: 25  YMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++ R  PS    P    S+  +L  L  + H     SL   + + G  P   T+++L+  
Sbjct: 222 HLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKA 281

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C    V     V  R+ R+              + KPDA +YNT+IDGLC++G + +A+
Sbjct: 282 HCSDAAVPIDDAV--RVFRN--------------IPKPDACSYNTVIDGLCRRGRLPEAR 325

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF +M      P VVTYT++I        +++A +LF EM  +G+ PNVVT++ ++D L
Sbjct: 326 DLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGL 385

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+   A  LLD M++    P+  TY++++DG C  G +  A E+   M   G
Sbjct: 386 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQG 440



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 34/252 (13%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  +++N+++   C       D  + +F+ +      PD  +++ +I+  C+ GR+    
Sbjct: 270 PTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRRGRLPEAR 325

Query: 92  VVLGRILRSCFTPDVVTFTSLI-----KVC----------------KPDAITYNTIIDGL 130
            +   ++ +   P VVT+T+LI     + C                 P+ +TY+++IDGL
Sbjct: 326 DLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGL 385

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G    A EL  +M  +   PN +TY+SVI G C      +A  +   M  QG +P+ 
Sbjct: 386 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 445

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             F  ++  LC  G+  EAS+ LD M   G+RP+  T+       + ++   C  G V  
Sbjct: 446 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVR 505

Query: 244 AKELFVSMESMG 255
           A +++ SM + G
Sbjct: 506 AFQVYQSMRTRG 517


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 110/198 (55%), Gaps = 14/198 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           L   + + G+ P+ +  +I  + + K G +     +  ++ +   +PD            
Sbjct: 17  LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPD------------ 64

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
             A++Y  +ID LCK G VD A+  F +M ++ V PN+V ++S++ G C  + W + + L
Sbjct: 65  --AVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEEL 122

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM++ G+ PN+V FN I+  LCK G++ E   L+D +   GVRPD  +YNTL+DG CL
Sbjct: 123 FFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCL 182

Query: 238 TGRVNHAKELFVSMESMG 255
            G ++ A +L   M S+G
Sbjct: 183 AGTIDEASKLLEGMVSVG 200



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI     AK    D  + +F ++   GL PD  ++  LI+  CK+GRV    V 
Sbjct: 28  PNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVK 87

Query: 94  LGRILRSCFTPDVVTF------------------------------------TSLIKVCK 117
             +++    TP++V F                                    T L  +CK
Sbjct: 88  FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 147

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               PD I+YNT+IDG C  G +D+A +L   M    +KPN  +
Sbjct: 148 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFS 207

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +++ G+C A   + A  LF +M+  G+ P VVT+N I+  L +  +  EA  L   MI
Sbjct: 208 YNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 267

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +   +TYNT+L+G C +  V+ A ++F S+ S G
Sbjct: 268 NSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKG 305



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 18/224 (8%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+N ++   CLA     D    L + + S GL P+ ++++ L++ +CK GR+   +
Sbjct: 168 PDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +  ++L +  TP VVT              YNTI+ GL +     +AKEL+L M +   
Sbjct: 226 SLFRKMLSNGITPGVVT--------------YNTILHGLFQTKRFSEAKELYLNMINSGT 271

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           K  + TY +++ G C +N  +EA ++F  +  +G+Q N++TF +++  L K G+ ++A  
Sbjct: 272 KWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMD 331

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L   +  +G+ PD  TY  + +     G +     LF +ME  G
Sbjct: 332 LFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNG 375



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A   F+ M+    +P  V   +++ G  + +K ++ V  LF  + + G+ P++   + 
Sbjct: 82  DDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDK-WEKVEELFFEMLNVGIHPNIVFFNT 140

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           ++   CK GRV  G  ++  I      PDV+++ +LI                       
Sbjct: 141 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 200

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP++ +YNT++ G CK G +D A  LF KM    + P VVTY +++ G      ++EAK
Sbjct: 201 LKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 260

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L++ M++ G +  + T+N I++ LCK+  +DEA  +   +   G++ +  T+  ++   
Sbjct: 261 ELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGAL 320

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   A +LF ++ + G
Sbjct: 321 LKGGRKEDAMDLFAAIPANG 340



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 64/130 (49%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ G   +G + +  +L   M    + PN   +      +      ++A  +F +M   G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+ V++  ++D LCK G++D+A    + MI  GV P+   +++L+ G C   +    +
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 246 ELFVSMESMG 255
           ELF  M ++G
Sbjct: 121 ELFFEMLNVG 130


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + +   LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ + ++ + V 
Sbjct: 295 KGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 354

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQ 414

Query: 253 SMG 255
             G
Sbjct: 415 RDG 417



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 135/238 (56%), Gaps = 18/238 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+   + M + + SP  V+ +N +L  L K         L   + S GL P+  T++IL
Sbjct: 226 DAVEFLNVMGKYNCSPDNVT-YNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNIL 284

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  +CKMG +     V+          +++T  +L+    PD  TYN +I+GLC +G ++
Sbjct: 285 VYGYCKMGWLKEAANVI----------ELMTQNNLL----PDVWTYNMLINGLCNEGRIE 330

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M++  + P+VV+Y ++I G    +  +EA +L  EM ++GV+PN VT N+++
Sbjct: 331 EAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              CK GKMD+AS+ +  M + G  PD  TYNTL++G+C  G +  A   F +M+ MG
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA---FRTMDEMG 445



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + + M      P  V+  NIM+    K    D   +   ++  +G  PD  T++ 
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVT-HNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           LIN +CK G +   F  +  + R     D VT  ++++ +C+                  
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D ++Y T+I G  K G VD+A +L+ +MK+K + P+ VTY  +I G C      +A 
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAI 543

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               E+++ G+ P+  T+N I+   C+ G +++A    + M+++  +PD FT N LL G 
Sbjct: 544 SKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGL 603

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G +  A +LF +  S G
Sbjct: 604 CMEGMLEKALKLFNTWVSKG 623



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++NI++    K        ++ + +    L PD++T+++LIN  C  GR+   F +
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
              +      PDVV++ +LI  C                     KP+A+T+N ++   CK
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCK 395

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A     KM++    P+ VTY ++I G+C A +  EA R   EM  + ++ + VT
Sbjct: 396 EGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVT 455

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N I+  LC+  K++EA  LL    + G   D  +Y TL+ G+   G V+ A +L+  M+
Sbjct: 456 LNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMK 515

Query: 253 S 253
            
Sbjct: 516 E 516



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++    K+ + D  L L+  +    + P   T++ +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L S   PD                TYNTI+ G C++G V+KA +   KM + + KP+V T
Sbjct: 550 LESGLLPD--------------ETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFT 595

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
              ++RG C      +A +LF   + +G   + VT+N ++  LCK G++D+A +LL  M 
Sbjct: 596 CNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEME 655

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + PD +TYN ++     +GR+  A+E    M   G
Sbjct: 656 EKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 26/249 (10%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC--------- 82
           + P  +  +  +G   ++        +FK++    L P+L T + L+N            
Sbjct: 131 TSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVS 190

Query: 83  ----------KMGRV----SHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTI 126
                     K+G V    +   V+ G  L + F  D V F +++    C PD +TYNTI
Sbjct: 191 FSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF-KDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D LCK+G +  A++L + MK + + PN  TY  ++ G+C      EA  +   M    +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+V T+N++++ LC  G+++EA  L D M    + PD  +YNTL++G     +++ A +
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFK 369

Query: 247 LFVSMESMG 255
           L   M   G
Sbjct: 370 LLEEMSEKG 378



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 29/239 (12%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           +++LG +A ++ +D  LS+  RL S    P        I  + + G+  H F +  ++ R
Sbjct: 109 SLLLGFIATDRRHDLHLSIL-RLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKR 163

Query: 100 SCFTPDVVT-----------------------FTSLIKV-CKPDAITYNTIIDGLCKQGF 135
               P+++T                       F   IK+   P+  T+N +I G C +  
Sbjct: 164 LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
              A E    M   N  P+ VTY +++   C      +A+ L ++M  +G+ PN  T+N+
Sbjct: 224 FKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNI 283

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++   CK G + EA+++++LM Q+ + PD +TYN L++G C  GR+  A +L   ME++
Sbjct: 284 LVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENL 342



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 45/263 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL ++D M      P  V+ +N ++G L +    +  +S    L  +GL PD  T++ 
Sbjct: 505 DRALKLWDEMKEKEIIPSTVT-YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT--------------------FTSLIKVC 116
           +++ +C+ G V   F    +++ + F PDV T                    F + +   
Sbjct: 564 ILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKG 623

Query: 117 KP-DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           K  D +TYNT+I  LCK+G +D A  L  +M++K + P+  TY ++I     +    EA+
Sbjct: 624 KAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE 683

Query: 176 RLFIEMMDQGVQP-----------------------NVVTFNVIMDELCKNGKMDEASSL 212
               +M+++G  P                       + V ++  + ELC  GK  +A  +
Sbjct: 684 EFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRI 743

Query: 213 LDLMIQHGVRPDAFTYNTLLDGF 235
                Q G+  D  TY  L+DG 
Sbjct: 744 FGESKQKGITVDKSTYINLMDGL 766



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG---FCY 167
           S++++  P     +T I    + G    A ++F KMK   ++PN++T  +++     +  
Sbjct: 126 SILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPS 185

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++  + ++  F + +  G+ PNV TFN+++   C   K  +A   L++M ++   PD  T
Sbjct: 186 SHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVT 245

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNT+LD  C  GR+  A++L + M+S G
Sbjct: 246 YNTILDALCKKGRLGDARDLLMDMKSRG 273



 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 134 GFV--DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           GF+  D+  +L L +  +   P+     + I  +  +   + A ++F +M    ++PN++
Sbjct: 113 GFIATDRRHDLHLSIL-RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLL 171

Query: 192 TFNVIMDELCKNGKMDEAS---SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T N +++ L +       S      +  I+ G+ P+  T+N ++ G+CL  +   A E  
Sbjct: 172 TCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFL 231

Query: 249 VSMESMGC 256
             M    C
Sbjct: 232 NVMGKYNC 239


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L KN        +++++   G+FP+L+T++ ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                + ++VT+ +LI  +C+                    P+ ITYNT+IDG C    +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKL 354

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  L   +K + + P++VTY  ++ GFC   D + A ++  EM ++G++P+ VT+ ++
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTIL 414

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D   ++  M++A  L   M + G+ PD  TY+ L+ GFC+ GR+N A  LF SM
Sbjct: 415 IDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSM 469



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 15/235 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M R       + ++N ++G L +    +    +  ++ S G+ P+L T++ L
Sbjct: 286 DAFKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC       G   LG+ L  C   D+ +     +   P  +TYN ++ G CK+G   
Sbjct: 345 IDGFC-------GVRKLGKALSLC--RDLKS-----RGLSPSLVTYNILVSGFCKKGDTS 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ++  +M+++ +KP+ VTYT +I  F  +++  +A +L   M + G+ P+V T++V++
Sbjct: 391 GAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLI 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C  G+M+EAS L   M++    P+   YNT++ G+C  G    A  LF  ME
Sbjct: 451 HGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREME 505



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + FN +L  +  +  ++     F   +   +  D+Y+  I+I   C+ G +   F +
Sbjct: 127 PGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDL 185

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGLCK 132
           L  +    F+P+VV +T+LI   CK   I                    TY  +I GL K
Sbjct: 186 LVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFK 245

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +  E++ KM++  V PN+ TY  V+   C      +A ++F EM ++GV  N+VT
Sbjct: 246 NGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVT 305

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  K +EA+ ++D M   G+ P+  TYNTL+DGFC   ++  A  L   ++
Sbjct: 306 YNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLK 365

Query: 253 SMG 255
           S G
Sbjct: 366 SRG 368



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +  NEA  + D M +     P + ++N ++      +     LSL + L S GL P L T
Sbjct: 317 MKANEANEVMDQM-KSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVT 375

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           ++IL++ FCK G  S    V+  +      P  VT+T LI                    
Sbjct: 376 YNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSME 435

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD  TY+ +I G C +G +++A  LF  M +K  +PN V Y +++ G+C      
Sbjct: 436 ELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSY 495

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
            A RLF EM ++ + PNV ++  +++ LCK  K  EA  L++ MI  G+ P
Sbjct: 496 RALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGP 546


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ + ++ + V 
Sbjct: 295 KGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 354

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 253 SMG 255
             G
Sbjct: 415 RDG 417



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++      + T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L  G C  GR   A+++   M
Sbjct: 313 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 149 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 202

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI              
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  +   PD ITYNT+I GLCK+G + +A  L  +M  K +KP+ +TYT++I G C
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCC 322

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  +   LC+ G+  +A  +L  M+  G++PDA 
Sbjct: 323 KEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDAR 382

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 383 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 151 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++  G C      +A+++  EM+  G++P+  T
Sbjct: 324 EGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDART 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G + + S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 63  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 183 RLGDLDEGFRLKSAMLASG 201


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V ++N ++    K  + D  + LF ++      PD++T++ILI+ +CK  R   G  
Sbjct: 134 APNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAK 193

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +L  +++    P+ +T+ +L+                     + CKP   T+N +ID  C
Sbjct: 194 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFC 253

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A ELF  M D+   P++ TY  +I G C AN  ++A++L   M + G  P+VV
Sbjct: 254 KVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVV 313

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N I+  LCK  ++DEA  + +++   G   D  T +TL+DG C + R++ A++L   M
Sbjct: 314 TYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 373

Query: 252 ESMG 255
           E  G
Sbjct: 374 ERNG 377



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++    K + +     L   +   G+ P    ++ +I   C  GRV    V 
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              + R C  P V+T+T L+                       C P+ +TYNT+I+G CK
Sbjct: 91  YRDMQRHC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  LF +M + +  P+V TY  +I G+C      +  +L  EM+  G +PN +T
Sbjct: 150 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 209

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +MD L K+GK  +A +L  +M++   +P  FT+N ++D FC  G+++ A ELF  M 
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 253 SMGC 256
             GC
Sbjct: 270 DRGC 273



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 22/225 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +   MLR    P   + FN+M+    K    D    LF+ +   G  PD+YT++I+
Sbjct: 225 DAFNLAQMMLRRDCKPSHFT-FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 283

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------ 118
           I+  C+  R+     +L R+  +   PDVVT+ S++  +CK                   
Sbjct: 284 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 343

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +T +T+IDGLCK   +D A++L  +M+     P+VV YT +I GFC A+  +++  
Sbjct: 344 FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 403

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            F EM+D+G  P V+T+++++D+LCK+ ++ +   LL  M++ GV
Sbjct: 404 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F+ ML  +   P V ++NI++    K +       L + +   G  P+  T++ 
Sbjct: 154 DEAVVLFNQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 212

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L++   K G+    F +   +LR    P   TF  +I +                     
Sbjct: 213 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 272

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD  TYN +I G C+   +D A++L  +M +    P+VVTY S++ G C A+  +EA 
Sbjct: 273 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 332

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++  + + G   +VVT + ++D LCK+ ++D+A  LL  M ++G  PD   Y  L+ GF
Sbjct: 333 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 392

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   +++ +   F  M   GC
Sbjct: 393 CKADQLDKSLAFFSEMLDKGC 413



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 22/201 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++ F +  +    + +    L    +PD +T+++LI   CK                  
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    YNTII GLC  G VD A   +  M+ ++  P+V+TYT ++   C +   ++A 
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARISDAS 122

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M++ G  PNVVT+N +++  CK G MDEA  L + M+++   PD FTYN L+DG+
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   R     +L   M   GC
Sbjct: 183 CKQERPQDGAKLLQEMVKYGC 203


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 27/269 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI      +A+ +F+ ML+M P P  V+   ++ G L K  + +    L   +   G  
Sbjct: 422 GDI-----EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCE 475

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------ 115
           PD +T++ L++ F K G++         ++     P+ V++T+LI       KV      
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C P+  +YN +I+GL K+    +A+++  KM ++ + PNV+TYT++I G C 
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                 A ++F +M  +   PN+ T++ ++  LC+ GK DEA  LL  M + G+ PD  T
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 655

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + +L+DGF + GR++HA  L   M  MGC
Sbjct: 656 FTSLIDGFVVLGRIDHAFLLLRRMVDMGC 684



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N +L  LAK +  +   +L+K++ ++G+ P L T + LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +   +PDV T+TSLI                     + C P+++TY+T+I+GLC +G V
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A ++  +M +K ++P V TYT  I   C      EA  L   M  +G +PNV T+  +
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L + GK++ A  L   M++ G+ P+  TYN L++  C+ GR + A ++F  ME  G
Sbjct: 345 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I   + +   SP   +  +++LG   +N++ D    +F R+   G  P+  T+S L
Sbjct: 216 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           IN  C  GRV     +L  ++     P V T+T  I                     + C
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+  TY  +I GL + G ++ A  L+ KM  + + PN VTY ++I   C    ++ A +
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M   G   N  T+N I+  LC  G +++A  L + M++ G  P   TYNTL++G+ 
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G VN+A  L   M+  GC
Sbjct: 455 TKGNVNNAARLLDLMKENGC 474



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + + M+      P V ++ + +  L   +H +  + L  R+   G  P++ T++ 
Sbjct: 285 DEALDMLEEMIE-KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+   ++G++     +  ++L+    P+ VT+ +LI ++C                   
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +  TYN II GLC  G ++KA  LF KM      P VVTY ++I G+    + N A 
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M + G +P+  T+N ++    K GK++ AS     M++ G+ P+  +Y  L+DG 
Sbjct: 464 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGH 523

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G+V+ A  L   ME MGC
Sbjct: 524 SKDGKVDIALSLLKRMEEMGC 544



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 15/213 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+    +P PVS +  ++   +K+   D  LSL KR+   G  P++ +++ +IN   
Sbjct: 501 FQEMVECGLNPNPVS-YTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K  R S    +  +++     P+V              ITY T+IDGLC+ G    A ++
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNV--------------ITYTTLIDGLCRNGRTQFAFKI 605

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M+ +   PN+ TY+S+I G C     +EA+ L  EM  +G+ P+ VTF  ++D    
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 665

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            G++D A  LL  M+  G +P+  TY+ LL G 
Sbjct: 666 LGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT+I+ L K+G V +A+ +  ++   ++ P+V TYTS+I G C   + + A  
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+ +G  PN VT++ +++ LC  G++DEA  +L+ MI+ G+ P  +TY   +   C
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 237 LTGRVNHAKELFVSMESMGC 256
                  A EL   M+  GC
Sbjct: 315 AIEHEEEAIELVARMKKRGC 334



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 52/83 (62%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ L+ +M++ G+QP+++TFN +++ L K GK+ EA  +L  + Q+ + PD FTY +L+ 
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C    ++ A  +F  M   GC
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGC 264



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L +N        +F  +      P+LYT+S LI   C+ G+     ++
Sbjct: 581 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 640

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  + R    PD VTFTSLI                       CKP+  TY+ ++ GL K
Sbjct: 641 LKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700

Query: 133 Q 133
           +
Sbjct: 701 E 701


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ML    K       L L  ++ + G  P+  T+++L+N     G +     +
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKEL 259

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +LR      V T+  LI+  C+                    P  +TYNTI+ GLCK
Sbjct: 260 IQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCK 319

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V  A++L   M +KN+ P++V+Y ++I G+    +  EA  LF E+  + + P+VVT
Sbjct: 320 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVT 379

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LC+ G +D A  L D MI+HG  PD FT+ T + GFC  G +  AKELF  M 
Sbjct: 380 YNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEML 439

Query: 253 SMG 255
           + G
Sbjct: 440 NRG 442



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 15/220 (6%)

Query: 34  PPVSSFNIMLGCLA-KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V + N +L  L  ++ + D    ++  +   G+ P + T++ +++ FCK G V     
Sbjct: 164 PDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQ 223

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L              F      C P+ +TYN +++GL   G +++AKEL   M    ++
Sbjct: 224 LL--------------FQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLE 269

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            +V TY  +IRG+C      EA RL  EM+ +G  P VVT+N IM  LCK G++ +A  L
Sbjct: 270 VSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKL 329

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           LD+M+   + PD  +YNTL+ G+   G +  A  LF  + 
Sbjct: 330 LDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELR 369



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F   LR     P V ++N ++  L +    D  + L   +   G  PD++T +  
Sbjct: 360 EAFLLFAE-LRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTF 418

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS---------------------LIKVC 116
           +  FCKMG +     +   +L     PD   + +                     L +  
Sbjct: 419 VRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 478

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYN  IDGL K G + +A EL  KM    + P+ VTYTS+I     A    +A+ 
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF+EM+ +G+ P+VVT+ V++      G++  A      M + GV P+  TYN L++G C
Sbjct: 539 LFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 598

Query: 237 LTGRVNHAKELFVSMESMG 255
              +++ A   F  M++ G
Sbjct: 599 KVRKMDQAYNFFAEMQAKG 617



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M++ H   P V +F   +    K  +      LF  + + GL PD + +   I
Sbjct: 396 AMRLKDEMIK-HGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRI 454

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
               K+G  S  F +   +L   F PD++T+   I             ++ K        
Sbjct: 455 VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 514

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TY +II      G + KA+ LFL+M  K + P+VVTYT +I  +        A   
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM ++GV PNV+T+N +++ LCK  KMD+A +    M   G+ P+ +TY  L++  C 
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCN 634

Query: 238 TGRVNHAKELFVSM 251
            G    A  L+  M
Sbjct: 635 LGHWQEALRLYKDM 648



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL +   M  M  SP  V+ +N+++  L+ +   +    L + +   GL   +YT+  
Sbjct: 219 QEALQLLFQMQAMGCSPNDVT-YNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDP 277

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI  +C+ G++     +   +L     P VVT+ +++  +CK                  
Sbjct: 278 LIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 337

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++YNT+I G  + G + +A  LF +++ +++ P+VVTY ++I G C   D + A 
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           RL  EM+  G  P+V TF   +   CK G +  A  L D M+  G++PD F Y T + G
Sbjct: 398 RLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 456



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 22/232 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML     P   +    ++G L K         + + + + G  PDL T+++ I+  
Sbjct: 434 LFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 492

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
            K+G +     ++ ++L +   PD VT+TS+I                     K   P  
Sbjct: 493 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSV 552

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TY  +I     +G +  A   F +M +K V PNV+TY ++I G C     ++A   F E
Sbjct: 553 VTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAE 612

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           M  +G+ PN  T+ ++++E C  G   EA  L   M+   ++PD+ T+ +LL
Sbjct: 613 MQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLL 664



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 22/219 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G++    P++A  + + ML     PP + ++N+ +  L K  +      L K++   GL 
Sbjct: 456 GELKLGDPSKAFGMQEEML-ARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 514

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD  T++ +I+     G +     +   +L     P VVT+T LI               
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K   P+ ITYN +I+GLCK   +D+A   F +M+ K + PN  TYT +I   C 
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCN 634

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
              W EA RL+ +M+D+ +QP+  T   ++  L K+ K+
Sbjct: 635 LGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKL 673



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 69/121 (57%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A+E++  M +  + P VVTY +++  FC      EA +L  +M   G  PN VT+NV
Sbjct: 183 IDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNV 242

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ L  +G+M++A  L+  M++ G+    +TY+ L+ G+C  G++  A  L   M S G
Sbjct: 243 LVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRG 302

Query: 256 C 256
            
Sbjct: 303 A 303



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKA---KELFLKMKDKNVKPNVVTYTSV----IRGFCYAN 169
           K   I+Y+ I+D L + G +  A    E  + +K +N   +VV+ + V    ++      
Sbjct: 78  KRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLL 137

Query: 170 DWNEAKR--------LFIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASSLLDLMIQHG 220
            W   K+        +F +M+ +G+ P+V   N ++  L  ++  +D A  + ++M++ G
Sbjct: 138 LWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECG 197

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + P   TYNT+LD FC  G V  A +L   M++MGC
Sbjct: 198 ICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGC 233


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R H   P V + ++++G L K         +F  +   G  
Sbjct: 298 GYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           P++++++I++N +   G +     +   +L     PD+ TF  LIK              
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KPD +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G+  ++V F+ I++ LCK G++ +A ++ DL +  G+ P A  
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVV 536

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y+ L+DG+CL G++  A  +F +M S G
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAG 564



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD++++S
Sbjct: 127 PELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 186

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +PDVV ++++I          K C       
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMV 246

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TY++++  LCK   +DKA+    +M +K V PN  TY ++I G+     W 
Sbjct: 247 QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWK 306

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT +++M  LCK GK+ EA  + D M   G  P+ F+Y  +L
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIML 366

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 367 NGYATKGCLVDMTDLF 382



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+ IML   A       +  LF  +   G+ PD+YT ++L
Sbjct: 342 EARDVFDTMA-MKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVL 400

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      PDVVT+ ++I  +C+                   
Sbjct: 401 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 460

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   Y+ +I G C  G + KAKEL  ++ +  +  ++V ++S+I   C      +A+ 
Sbjct: 461 APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQN 520

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F   ++ G+ P  V ++++MD  C  GKM++A  + D M+  G+ P+   Y TL++G+C
Sbjct: 521 IFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYC 580

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++    LF  M   G
Sbjct: 581 KIGRIDEGLSLFREMLQKG 599



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 128/268 (47%), Gaps = 28/268 (10%)

Query: 16  PNEALCIFDYMLRMHPSP----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           P  A+ +F+        P    P   ++ I++ C  +    +  L+ F +L  TGL  ++
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 146

Query: 72  YTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK---------------- 114
              + L+  FC+  R      ++L R       PDV +++ L+K                
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 115 -------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                  VC PD + Y+T+IDG  K+G V+KA +LF +M  + + P+ VTY+SV+   C 
Sbjct: 207 MMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCK 266

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   ++A+    +M+++GV PN  T+N ++      G+  EA  +   M +H + PD  T
Sbjct: 267 ARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT 326

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + L+   C  G++  A+++F +M   G
Sbjct: 327 LSMLMGSLCKYGKIKEARDVFDTMAMKG 354



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y +  
Sbjct: 411 DKAMIIFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +     ++  I+ +    D+V F+S              II+ LCK G V
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS--------------IINNLCKLGRV 515

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ +F    +  + P  V Y+ ++ G+C      +A R+F  M+  G++PN V +  +
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTL 575

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G++DE  SL   M+Q G++P    YN ++DG    GR   AK  F  M   G
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 42  TLRPEEAHDLLDELQR-RGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASR 100

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    +++    L+K      
Sbjct: 101 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAK 160

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      P+VV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVV 220

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y++VI GF    D N+A  LF EM+ +G+ P+ VT++ ++  LCK   MD+A + L  M
Sbjct: 221 AYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A  IFD  + +   P  V    +M G CL      +  L +F  + S G+ P+   +  
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N +CK+GR+  G  +   +L+              K  KP  I YN IIDGL + G  
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQ--------------KGIKPSTILYNIIIDGLFEAGRT 620

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK  F +M +  +  N  TY  V+RG      ++EA  LF E+    V+ N++T N +
Sbjct: 621 VPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM 680

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  + +  +++EA  L   + + G+ P   TY+ ++      G V  A+++F SM++ GC
Sbjct: 681 IAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 740



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD M+     P  V  +  ++    K    D  LSLF+ +   G+ P    ++I
Sbjct: 551 EKALRVFDAMVSAGIEPNDVV-YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609

Query: 77  LINCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV- 115
           +I+   + GR                     ++  V+ G     CF   +  F  L  + 
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K + IT NT+I G+ +   V++AK+LF  +    + P VVTY+ +I          EA+
Sbjct: 670 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M + G +P+    N ++ EL K  ++  A + L  + +     +  T   L+D F
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 789

Query: 236 CLTG 239
              G
Sbjct: 790 SSKG 793



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NI+L  L KN+ +D  + LFK L +  +  ++ T + +I    +  RV     +   I
Sbjct: 641 TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASI 700

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P VVT              Y+ +I  L K+G V++A+++F  M++   +P+   
Sbjct: 701 SRSGLVPCVVT--------------YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 746

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
              V+R     N+   A     ++ ++      +T  +++D     G   E
Sbjct: 747 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCRE 797


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 24/205 (11%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV 106
           A N HY  V++        G   D Y++  LIN  CK+G  +   +   ++LR  F PDV
Sbjct: 123 ALNFHYKVVVA-------RGFDVDHYSYGTLINGLCKVGGDTRAAL---QLLRQAFEPDV 172

Query: 107 VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           V +T              T+ID +CK  FV+ A +L+ +M    + PNVVTYT++I GFC
Sbjct: 173 VMYT--------------TVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFC 218

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 EA  LF +M+ + + PNV TFN ++D  CK GK++EA ++L+ M++  ++ D  
Sbjct: 219 VVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVV 278

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
            Y++L++G+CL   V  A+ +F +M
Sbjct: 279 AYSSLMNGYCLVNEVFKAQSIFKTM 303



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 125/222 (56%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +  ++  + K+   +    L+  + ++G+ P++ T++ LI+ FC +G++     +
Sbjct: 170 PDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGL 229

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             +++     P+V TF              N ++D  CK+G +++AK +   M +K++K 
Sbjct: 230 FKKMISENINPNVYTF--------------NGLVDAFCKEGKIEEAKNVLNTMMEKDLKS 275

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VV Y+S++ G+C  N+  +A+ +F  M ++ +  +V ++N++++E CK   +DEA  L 
Sbjct: 276 DVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLF 335

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M    + PD  TY+TL+DG C +GR+++A EL   M+  G
Sbjct: 336 EEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRG 377



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 25/215 (11%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           FD    M  S   P V ++  ++         +  L LFK++ S  + P++YT + L++ 
Sbjct: 192 FDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDA 251

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCKPDAI------------ 121
           FCK G++     VL  ++      DVV ++SL+       +V K  +I            
Sbjct: 252 FCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYD 311

Query: 122 --TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             +YN +I+  CK   VD+A +LF +M  K + P+VVTY ++I G C +   + A  L  
Sbjct: 312 VRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVD 371

Query: 180 EMMDQGVQPNVVTFNVIMDELCKN--GKMDEASSL 212
           EM D+G  PN++T+  I+D LCKN  G +    SL
Sbjct: 372 EMDDRGEPPNIITYCPIVDVLCKNHDGVLSSGKSL 406



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           T I G+C+ G + +A     K+   +    +  +Y ++I G C       A    ++++ 
Sbjct: 109 TPIKGICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAA---LQLLR 165

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           Q  +P+VV +  ++D +CK+  +++A  L   M+  G+ P+  TY  L+DGFC+ G++  
Sbjct: 166 QAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEE 225

Query: 244 AKELFVSMES 253
           A  LF  M S
Sbjct: 226 ALGLFKKMIS 235



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 159 TSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           T+ I+G C   D   A     +++  +G   +  ++  +++ LCK G    A+  L   +
Sbjct: 108 TTPIKGICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAALQL---L 164

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +    PD   Y T++D  C    VN A +L+  M + G
Sbjct: 165 RQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASG 202


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 21/218 (9%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-- 116
           F+ ++  GL+PD + ++I+I  +CK+G ++  F  LG +L+   TP V T+T LI  C  
Sbjct: 379 FQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCK 438

Query: 117 -------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               PD +T+N +IDG  K+G++ KA EL   M+   + P+ VT
Sbjct: 439 SGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVT 498

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I         NEAK +  E++ +G+ P+V+TF  ++D   K G  +EA  +   M 
Sbjct: 499 YNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMS 558

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  V+PD  T + LL+G+C   R++ A  LF+ M   G
Sbjct: 559 ERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAG 596



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    + I++G   K    +        +   G+ P + T+++LIN  CK G ++    +
Sbjct: 389 PDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYL 448

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R++     PDVVTF  LI                         PD +TYN +I  L  
Sbjct: 449 LQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIA 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G+ ++AK++  ++  + + P+V+T+T VI GF    ++ EA  ++  M ++ V+P+VVT
Sbjct: 509 RGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVT 568

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            + +++  C+  +MDEA++L   M+  G++PD   YN L+ GFC  G +N A  L   M
Sbjct: 569 CSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMM 627



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 27/248 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI     N+A      ML+   +P  V+++ +++    K+        L +R+   GL 
Sbjct: 405 GDI-----NKAFQYLGEMLKFGITPS-VTTYTLLINACCKSGDMAMAEYLLQRMMLEGLI 458

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD+ T + LI+ F K G +   F +L  +  +  +PD VT+ +LI               
Sbjct: 459 PDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDI 518

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 +   PD +T+  +IDG  K+G  ++A  ++  M +++VKP+VVT ++++ G+C 
Sbjct: 519 LHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCR 578

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   +EA  LF++M+D G++P++V +N ++   C  G M+ A +L+ +MI  G  P+  T
Sbjct: 579 ARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITT 638

Query: 228 YNTLLDGF 235
           +     GF
Sbjct: 639 HRAFALGF 646



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 53/275 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +   N +L  L ++   D    + + + S G+  +    S+ I  +C  G +  G+ +
Sbjct: 217 PSMGVCNSLLKALLRSHQLDLAWDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKI 276

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK----------------------------------- 117
           L  +       DV+ +T +I  +CK                                   
Sbjct: 277 LMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCK 336

Query: 118 -----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                            P+   Y++ +  LCK G + +A + F +M +  + P+   YT 
Sbjct: 337 KGRSDKAINLLNFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTI 396

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I G+C   D N+A +   EM+  G+ P+V T+ ++++  CK+G M  A  LL  M+  G
Sbjct: 397 IIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEG 456

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + PD  T+N L+DGF   G +  A EL   M S G
Sbjct: 457 LIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAG 491



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D M     SP  V+ +N ++  L    + +    +   L   GL PD+ T + 
Sbjct: 478 QKAFELLDIMRSAGMSPDTVT-YNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTD 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+ F K G     F+V   +      PDVVT ++L              ++G C+   +
Sbjct: 537 VIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSAL--------------LNGYCRARRM 582

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  LFLKM D  +KP++V Y ++I GFC A + N A  L   M+D G  PN+ T    
Sbjct: 583 DEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAF 642

Query: 197 M----DELCKNGKMDEASSLLDLMIQH 219
                 +  KN ++  +  L  +++ H
Sbjct: 643 ALGFEKKWVKNPELHASLKLKQILLTH 669



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 26/221 (11%)

Query: 58  LFKRLNSTGL-FPDLYT-HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           LFK +  TG    DL T +S+L++C+    +VS    ++  I      P +    SL+K 
Sbjct: 169 LFKLVYDTGFGTKDLETVYSMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKA 228

Query: 116 C---------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                                   +A   +  I+  C +G +    ++ ++MK+  +K +
Sbjct: 229 LLRSHQLDLAWDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKAD 288

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           V+ YT VI   C  +    A  L  +M+  G+  + V+ + ++D  CK G+ D+A +LL+
Sbjct: 289 VIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLN 348

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                 VRP+ F Y++ +   C  G +  A + F  M   G
Sbjct: 349 FF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFG 386


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 135/238 (56%), Gaps = 18/238 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+   + M + + SP  V+ +N +L  L K         L   + S GL P+  T++IL
Sbjct: 226 DAVEFLNVMGKYNCSPDNVT-YNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNIL 284

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  +CKMG +     V+          +++T  +L+    PD  TYN +I+GLC +G ++
Sbjct: 285 VYGYCKMGWLKEAANVI----------ELMTQNNLL----PDVWTYNMLINGLCNEGRIE 330

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +M++  + P+VV+Y ++I G    +  +EA +L  EM ++GV+PN VT N+++
Sbjct: 331 EAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              CK GKMD+AS+ +  M + G  PD  TYNTL++G+C  G +  A   F +M+ MG
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEA---FRTMDEMG 445



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + + M      P  V+  NIM+    K    D   +   ++  +G  PD  T++ 
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVT-HNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           LIN +CK G +   F  +  + R     D VT  ++++ +C+                  
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D ++Y T+I G  K G VD+A +L+ +MK+K + P+ VTY  +I G C      +A 
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAI 543

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               E+++ G+ P+  T+N I+   C+ G +++A    + M+++  +PD FT N LL G 
Sbjct: 544 SKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGL 603

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G +  A +LF +  S G
Sbjct: 604 CMEGVLEKALKLFNTWVSKG 623



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++NI++    K        ++ + +    L PD++T+++LIN  C  GR+   F +
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
              +      PDVV++ +LI  C                     KP+A+T+N ++   CK
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCK 395

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A     KM++    P+ VTY ++I G+C A +  EA R   EM  + ++ + VT
Sbjct: 396 EGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVT 455

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N I+  LC+  K++EA  LL    + G   D  +Y TL+ G+   G V+ A +L+  M+
Sbjct: 456 LNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMK 515

Query: 253 S 253
            
Sbjct: 516 E 516



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+  ++    K+ + D  L L+  +    + P   T++ +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L S   PD                TYNTI+ G C++G V+KA +   KM + + KP+V T
Sbjct: 550 LESGLLPD--------------ETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFT 595

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
              ++RG C      +A +LF   + +G   + VT+N ++  LCK G++D+A +LL  M 
Sbjct: 596 CNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEME 655

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + PD +TYN ++     +GR+  A+E    M   G
Sbjct: 656 EKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 26/249 (10%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC--------- 82
           + P  +  +  +G   ++        +FK++    L P+L T + L+N            
Sbjct: 131 TSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVS 190

Query: 83  ----------KMGRV----SHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTI 126
                     K+G V    +   V+ G  L + F  D V F +++    C PD +TYNTI
Sbjct: 191 FSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF-KDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           +D LCK+G +  A++L + MK + + PN  TY  ++ G+C      EA  +   M    +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+V T+N++++ LC  G+++EA  L D M    + PD  +YNTL++G     +++ A +
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFK 369

Query: 247 LFVSMESMG 255
           L   M   G
Sbjct: 370 LLEEMSEKG 378



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 29/239 (12%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           +++LG +A ++ +D  LS+  RL S    P        I  + + G+  H F +  ++ R
Sbjct: 109 SLLLGFIATDRRHDLHLSIL-RLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKR 163

Query: 100 SCFTPDVVT-----------------------FTSLIKV-CKPDAITYNTIIDGLCKQGF 135
               P+++T                       F   IK+   P+  T+N +I G C +  
Sbjct: 164 LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
              A E    M   N  P+ VTY +++   C      +A+ L ++M  +G+ PN  T+N+
Sbjct: 224 FKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNI 283

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++   CK G + EA+++++LM Q+ + PD +TYN L++G C  GR+  A +L   ME++
Sbjct: 284 LVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENL 342



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 45/263 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL ++D M      P  V+ +N ++G L +    +  +S    L  +GL PD  T++ 
Sbjct: 505 DRALKLWDEMKEKEIIPSTVT-YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT--------------------FTSLIKVC 116
           +++ +C+ G V   F    +++ + F PDV T                    F + +   
Sbjct: 564 ILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKG 623

Query: 117 KP-DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           K  D +TYNT+I  LCK+G +D A  L  +M++K + P+  TY ++I     +    EA+
Sbjct: 624 KAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE 683

Query: 176 RLFIEMMDQGVQPN-----------------------VVTFNVIMDELCKNGKMDEASSL 212
               +M+++G  P+                        V ++  + ELC  GK  +A  +
Sbjct: 684 EFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRI 743

Query: 213 LDLMIQHGVRPDAFTYNTLLDGF 235
                Q G+  D  TY  L+DG 
Sbjct: 744 FGESKQKGITVDKSTYINLMDGL 766



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG---FCY 167
           S++++  P     +T I    + G    A ++F KMK   ++PN++T  +++     +  
Sbjct: 126 SILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPS 185

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++  + ++  F + +  G+ PNV TFN+++   C   K  +A   L++M ++   PD  T
Sbjct: 186 SHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVT 245

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNT+LD  C  GR+  A++L + M+S G
Sbjct: 246 YNTILDTLCKKGRLGDARDLLMDMKSRG 273



 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 134 GFV--DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           GF+  D+  +L L +  +   P+     + I  +  +   + A ++F +M    ++PN++
Sbjct: 113 GFIATDRRHDLHLSIL-RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLL 171

Query: 192 TFNVIMDELCKNGKMDEAS---SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T N +++ L +       S      +  I+ G+ P+  T+N ++ G+CL  +   A E  
Sbjct: 172 TCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFL 231

Query: 249 VSMESMGC 256
             M    C
Sbjct: 232 NVMGKYNC 239


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 21/234 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  L K    D  L + + + S G+ PD+YT+SILI+ FCK G V  G  ++ 
Sbjct: 325 VYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIE 384

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQG 134
            +  S   P +V+++SL   +CK                     D   Y+ +I G C QG
Sbjct: 385 EMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQG 444

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D A +L  +M   N+ P+   + S++ GFC    W  A   F  M++ G+ P++ T N
Sbjct: 445 DLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCN 504

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           VI+D  C+ G+++EA +L++ M   G+ P+ FTYN +++  C   +   A ELF
Sbjct: 505 VIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELF 558



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++ N+++    +    +  L+L   + + G+FP+L+T++ +IN  CK  +      +
Sbjct: 498 PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALEL 557

Query: 94  LGRILRSCFTPDVVTFTSLI-----------------KVCK----PDAITYNTIIDGLCK 132
              +L+    P VV +++LI                 ++ K    PD + Y  +I+ LC 
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCH 617

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  + +A  LF KM +  + P+ ++YTSVI GFC   D  +A  LF EM+ +G  P VVT
Sbjct: 618 RSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVT 677

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  CK  ++D A  L+D M + G+ PD  TYN L+      G ++ A E+   M+
Sbjct: 678 YTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMK 737

Query: 253 SMG 255
             G
Sbjct: 738 ENG 740



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 21/219 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K +  +  L LF  +    + P +  +S LI+ F K        ++
Sbjct: 533 PNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALML 592

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCK 132
             R+L+   TPD+V +T LI       ++C+              PD I+Y ++I G C+
Sbjct: 593 YARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCR 652

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA  LF +M  +   P VVTYTS++ G+C  N  + A  L  EM  +G+ P+VVT
Sbjct: 653 IGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVT 712

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +NV++    + G +D+A  +L+ M ++GV PD  TY  L
Sbjct: 713 YNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMML 751



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 18/204 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N +L CLA+    + + SLF+ + STG  P+++T++I++N +CK G      +     
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCK-GNFGEADI----- 269

Query: 98  LRSCFTPDVVTFTSLIKVCK-----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                  D    T +++  +     P  +TY+T I GLC+ G+V+ A +    +   N  
Sbjct: 270 -------DTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGL 322

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            NV  Y ++I G C   + +EA ++  EM   G+ P+V T+++++   CK G +++   L
Sbjct: 323 VNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYL 382

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFC 236
           ++ M    + P   +Y++L  G C
Sbjct: 383 IEEMKYSNMEPSLVSYSSLFHGLC 406



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I ++ +I        ++ A ++FL+ K   ++ +  +   +++    AN     + LF E
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 181 MMDQGVQPNVVTFNVIMDELCKN--GKMD----EASSLLDLMIQHGVRPDAFTYNTLLDG 234
           M   G  PNV T+ ++M+  CK   G+ D    +A+ +L+ M ++G  P   TY+T + G
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 235 FCLTGRVNHAKELFVSMES 253
            C  G V  A +   S+ S
Sbjct: 300 LCRVGYVESALDFVRSLIS 318


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G+QP+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K ++P+ +TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PDA 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDAR 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +    L P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  +PD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 35  PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G +     V 
Sbjct: 106 PFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVF 165

Query: 95  GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
             I +    P VV++ +L+                        +PD  TY+ +I+GLCK+
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D A +LF +M  K + PN VT+T++I G C     + A  ++ +M+ Q + P+++T+
Sbjct: 226 NKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           N ++  LCK G + +A+ L+D M   G++PD  TY TL+DG C  G ++ A E
Sbjct: 286 NTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFE 338



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I G  + GF+  A E +   ++  +     T   V+        +     
Sbjct: 69  RSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 25/261 (9%)

Query: 17  NEALCIF-DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           ++A  IF D +L  H     ++ +N ++G   K    +    L   +   G  PD+ THS
Sbjct: 86  HQAYQIFRDELLGQHCDTNHIT-YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHS 144

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            ++   C  G +S         +     PD V F  L+  +CK                 
Sbjct: 145 SIVQALCNTGNLSRAMQYFRESVEC--APDSVLFNILVHGLCKANQLSEARQMIEEMSER 202

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD +TYN++IDGLCK   +++A++L   M  + V+PN+VTY ++I G+C       A
Sbjct: 203 GIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLA 262

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L   M+  G  P+VVTFN ++   C+  K+D+A  +L LM +    P+  TYN L+ G
Sbjct: 263 HQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISG 322

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  GR N A EL   M+  G
Sbjct: 323 LCDAGRANEACELLSEMDGRG 343



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSF--NIMLGCLAKNKHYDTVLSLFK-RLNSTGLFPDLYTHS 75
           +L  F ++ R H      ++F  N +L  L K + +     +F+  L       +  T++
Sbjct: 50  SLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYN 109

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------C 116
            LI  FCK G +   F +L  +     +PDVVT +S+++                    C
Sbjct: 110 TLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVEC 169

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD++ +N ++ GLCK   + +A+++  +M ++ + P+VVTY S+I G C +    EA++
Sbjct: 170 APDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQ 229

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+ + V+PN+VT+N ++   CK G    A  L++ MIQ G  PD  T+N+L+ GFC
Sbjct: 230 LLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFC 289

Query: 237 LTGRVNHAKELFVSMESMGC 256
              +++ A E+   M+   C
Sbjct: 290 QKSKIDKACEVLHLMKKGLC 309



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L K+   +    L + +    + P+L T++ LI  +CK G       +
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
           + R+++S   PDVVTF SLI                      +C P+ +TYN +I GLC 
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCD 325

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  ++A EL  +M  + + P+++TY S+I  FC      +A ++   M+++GV P+ ++
Sbjct: 326 AGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGIS 385

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  +   L K+ + DEA +LLD M   G  P+ FT+N+L++G C + R++ A+ L   M 
Sbjct: 386 YCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMR 445

Query: 253 SMGC 256
            +GC
Sbjct: 446 RVGC 449



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  + + M++    P  V+ +N ++    K         L +R+  +G  PD+ T + 
Sbjct: 225 EEARQLLETMVKRKVRPNLVT-YNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNS 283

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVCK--------- 117
           LI+ FC+  ++     VL  + +    P++VT+  LI          + C+         
Sbjct: 284 LISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG 343

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ITYN++I   C+   +++A ++   M ++ V P+ ++Y ++      +  ++EA 
Sbjct: 344 ILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAF 403

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M D G  PN+ TFN +M+ LC + ++DEA  LL +M + G  P A TY  L+ G 
Sbjct: 404 ALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGL 463

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GRV+ AKE+ V M S G
Sbjct: 464 CKAGRVDDAKEVLVMMVSEG 483



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 24/247 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    +    D    +   +      P+L T+++LI+  C  GR +    +
Sbjct: 276 PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACEL 335

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  +      PD++T+ SLI + C+                    PD I+Y T+   L K
Sbjct: 336 LSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLK 395

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A  L   M D    PN+ T+ S++ G C +   +EA+ L   M   G  P   T
Sbjct: 396 SERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAAST 455

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF---V 249
           + V++  LCK G++D+A  +L +M+  G++P   +  T++      G+ + A   F   V
Sbjct: 456 YEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVV 515

Query: 250 SMESMGC 256
           + ES  C
Sbjct: 516 AAESKAC 522


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 131/263 (49%), Gaps = 24/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHS 75
            +AL + + M     SP  V++ NI++G L + K       + +RL   G+  P++ T++
Sbjct: 245 QKALELVERMAEFGCSPDTVTN-NILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYT 303

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            +I+ +CK GR+     V   ++    TP+ VT+  LI                     +
Sbjct: 304 SVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILR 363

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PD +T++T+IDG C+ G +D A   + +M    ++PN  T++ +I  FC  N   EA
Sbjct: 364 RCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEA 423

Query: 175 KRLFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            R   E+ M   + P     N ++D LCK GK+DEA+ +L  M   G RPD +TY  L+ 
Sbjct: 424 LRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILII 483

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C+ GR++ A   F  M   GC
Sbjct: 484 GHCMKGRISEAITFFNKMVDTGC 506



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 23/258 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M       P     + + G  A     D   +L  +    G   + Y ++ L
Sbjct: 139 DALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKAPQFGCCVEAYAYNKL 198

Query: 78  INCFCKMGRVSHGFVVL-GRILRSCFTPDVVTFTSLIKV--------------------- 115
           +N F   GRV     +  G I    ++PDV +F   IK                      
Sbjct: 199 MNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFG 258

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEA 174
           C PD +T N ++ GLC+   V + +E+  +++   V  PNVVTYTSVI G+C +    +A
Sbjct: 259 CSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDA 318

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             ++ +M+  G  PN VT+NV+++   K G M  A ++   MI     PD  T++TL+DG
Sbjct: 319 MAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDG 378

Query: 235 FCLTGRVNHAKELFVSME 252
           +C  G+++ A   +  M 
Sbjct: 379 YCRCGQLDDAMRTWTEMS 396



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 23/221 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +++ M+    +P  V+ +N+++    K  +  + +++++++      PD+ T S 
Sbjct: 316 EDAMAVYNDMIGCGTTPNAVT-YNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFST 374

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+ +C+ G++         + +    P+  TF+ +I   CK                  
Sbjct: 375 LIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRT 434

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P A   N +ID LCK G VD+A  + ++M+ K  +P+  TYT +I G C     +EA
Sbjct: 435 DIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEA 494

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
              F +M+D G  P+ +T N  +  L K G   E   ++ +
Sbjct: 495 ITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIMKI 535



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P A +Y  +I  LC+      A +LF +M D++       + S + G C    + +A   
Sbjct: 119 PSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAA 178

Query: 178 FIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGF 235
            +    Q G       +N +M+     G++ +A +L +  IQ G   PD +++N  + G 
Sbjct: 179 LLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGV 238

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A EL   M   GC
Sbjct: 239 CQVGDVQKALELVERMAEFGC 259



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEA 209
           + P+  +Y  VI   C ++   +A +LF +M DQ G  PN    + +       G +D A
Sbjct: 117 IPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAA 176

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++LL    Q G   +A+ YN L++ F   GRV  A  LF
Sbjct: 177 AALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALF 215


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   +++TG+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L  +L +   P+ VTFT+LI   CK                    PD ITYNT+I GLC+
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D      L   M+ + ++ + VT
Sbjct: 289 RGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVT 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC TG V  A +L   M+
Sbjct: 349 YTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RNG 411



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K +++  V   +K +   G  P LY  +IL++ FCK G
Sbjct: 91  LTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
            +    +V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D+A E+  +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+++T+N ++  LC+ G + +A  L++ MI  G++PD  TY TL+DG C  G +   
Sbjct: 271 GFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEIT 330

Query: 245 KEL 247
            EL
Sbjct: 331 FEL 333



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH +   P V ++++++  L K    D    +   +   GL P+  T + LI+  CK G+
Sbjct: 197 MHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L   F PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++   EL  +M  +N++ + VTYT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +IM+E CK G +  AS LL  M ++G  P   T
Sbjct: 377 LKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N +L  LAK +  +   +L+K++ ++G+ P L T + LIN   K G+V    ++L +I
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 266

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +   +PDV T+TSLI                     + C P+++TY+T+I+GLC +G V
Sbjct: 267 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 326

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A ++  +M +K ++P V TYT  I   C      EA  L   M  +G +PNV T+  +
Sbjct: 327 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 386

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L + GK++ A  L   M++ G+ P+  TYN L++  C+ GR + A ++F  ME  G
Sbjct: 387 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 140/269 (52%), Gaps = 27/269 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI      +A+ +F+ ML+M P P  V+   ++ G L K  + +    L   +   G  
Sbjct: 464 GDI-----EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCE 517

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV------ 115
           PD +T++ L++ F K G++         ++     P+ V++T+LI       KV      
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C P+  +YN +I+GL K+    +A+++  KM ++ + PNV+TYT++I G C 
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                 A ++F +M  +   PN+ T++ ++  LC+ GK DEA  LL  M + G+ PD  T
Sbjct: 638 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 697

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + +L+DGF + GR++HA  L   M  +GC
Sbjct: 698 FTSLIDGFVVLGRIDHAFLLLRRMVDVGC 726



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I   + +   SP   +  +++LG   +N++ D    +F R+   G  P+  T+S L
Sbjct: 258 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           IN  C  GRV     +L  ++     P V T+T  I                     + C
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 376

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+  TY  +I GL + G ++ A  L+ KM  + + PN VTY ++I   C    ++ A +
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 436

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M   G   N  T+N I+  LC  G +++A  L + M++ G  P   TYNTL++G+ 
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 496

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G VN+A  L   M+  GC
Sbjct: 497 TKGNVNNAARLLDLMKENGC 516



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + + M+      P V ++ + +  L   +H +  + L  R+   G  P++ T++ 
Sbjct: 327 DEALDMLEEMIE-KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 385

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+   ++G++     +  ++L+    P+ VT+ +LI ++C                   
Sbjct: 386 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +  TYN II GLC  G ++KA  LF KM      P VVTY ++I G+    + N A 
Sbjct: 446 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 505

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M + G +P+  T+N ++    K GK++ AS     M++ G+ P+  +Y TL+DG 
Sbjct: 506 RLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGH 565

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G+V+ A  L   ME MGC
Sbjct: 566 SKDGKVDIALSLLERMEEMGC 586



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 46/278 (16%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+    +P PVS +  ++   +K+   D  LSL +R+   G  P++ +++ +IN   
Sbjct: 543 FQEMVECGLNPNPVS-YTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLS 601

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAI 121
           K  R S    +  ++      P+V+T+T+LI                     + C P+  
Sbjct: 602 KENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 661

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY+++I GLC++G  D+A+ L  +M+ K + P+ VT+TS+I GF      + A  L   M
Sbjct: 662 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 721

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDE------------------------ASSLLDLMI 217
           +D G +PN  T++V++  L K   + E                         S+LL  M 
Sbjct: 722 VDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMS 781

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G  P   TY+TL+ G C  GR   A++L   M+  G
Sbjct: 782 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 819



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 125/282 (44%), Gaps = 46/282 (16%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + + M  M  +P  V S+N ++  L+K   +     +  ++   GL P++ T++ LI
Sbjct: 574 ALSLLERMEEMGCNPN-VESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLI 632

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           +  C+ GR    F +   + +    P++ T++SLI                     K   
Sbjct: 633 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLA 692

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF------------ 165
           PD +T+ ++IDG    G +D A  L  +M D   KPN  TY+ +++G             
Sbjct: 693 PDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVA 752

Query: 166 -----CYANDWNE-------AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                 Y+   +E          L   M + G +P + T++ ++  LC+ G+  EA  L+
Sbjct: 753 VQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLV 812

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G  PD   Y +LL   C    V+HA ++F S+E+ G
Sbjct: 813 KDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKG 854



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 45/265 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++ ++  L +    D    L K +   GL PD  T + LI+ F  +GR+ H F++
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 717

Query: 94  LGRILRSCFTPDVVTFTSLIKV-------------------------------------- 115
           L R++     P+  T++ L+K                                       
Sbjct: 718 LRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLL 777

Query: 116 -------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                  C+P   TY+T++ GLC++G   +A++L   MK++   P+   Y S++   C  
Sbjct: 778 ARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKN 837

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            + + A ++F  +  +G Q ++  +  ++  LCK G+++EA +L D M++     D   +
Sbjct: 838 LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVW 897

Query: 229 NTLLDGFCLTGRVNHAKELFVSMES 253
             L+DG    G ++   +L   MES
Sbjct: 898 TVLVDGLLKEGELDLCMKLLHIMES 922



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT+I+ L K+G V +A+ +  ++   ++ P+V TYTS+I G C   + + A  
Sbjct: 237 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 296

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+ +G  PN VT++ +++ LC  G++DEA  +L+ MI+ G+ P  +TY   +   C
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 356

Query: 237 LTGRVNHAKELFVSMESMGC 256
                  A EL   M+  GC
Sbjct: 357 AIEHEEEAIELVARMKKRGC 376



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 52/83 (62%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ L+ +M++ G+QP+++TFN +++ L K GK+ EA  +L  + Q+ + PD FTY +L+ 
Sbjct: 224 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 283

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C    ++ A  +F  M   GC
Sbjct: 284 GHCRNRNLDLAFGVFDRMVKEGC 306


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N +L  LAK +  +   +L+K++ ++G+ P L T + LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +   +PDV T+TSLI                     + C P+++TY+T+I+GLC +G V
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A ++  +M +K ++P V TYT  I   C      EA  L   M  +G +PNV T+  +
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L + GK++ A  L   M++ G+ P+  TYN L++  C+ GR + A ++F  ME  G
Sbjct: 345 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I   + +   SP   +  +++LG   +N++ D    +F R+   G  P+  T+S L
Sbjct: 216 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           IN  C  GRV     +L  ++     P V T+T  I                     + C
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+  TY  +I GL + G ++ A  L+ KM  + + PN VTY ++I   C    ++ A +
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M   G   N  T+N I+  LC  G +++A  L + M++ G  P   TYNTL++G+ 
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G VN+A  L   M+  GC
Sbjct: 455 TKGNVNNAARLLDLMKENGC 474



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ ++  ML+    P  V+ +N ++  L     + T L +F  +   G   +  T++ +I
Sbjct: 357 AIGLYHKMLKEGLVPNTVT-YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 415

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
              C  G +    V+  ++L+    P VVT+ +LI                       C+
Sbjct: 416 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TYN ++ G  K G ++ A   F +M +  + PN V+YT++I G       + A  L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M + G  PNV ++N +++ L K  +  EA  + D M++ G+ P+  TY TL+DG C 
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR   A ++F  ME   C
Sbjct: 596 NGRTQFAFKIFHDMEKRKC 614



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 24/248 (9%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI      +A+ +F+ ML+M P P  V+   ++ G L K  + +    L   +   G  
Sbjct: 422 GDI-----EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCE 475

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD +T++ L++ F K G++         ++     P+ V++T+LI              D
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI--------------D 521

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G  K G VD A  L  +M++    PNV +Y +VI G    N ++EA+++  +M++QG+ P
Sbjct: 522 GHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLP 581

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NV+T+  ++D LC+NG+   A  +   M +    P+ +TY++L+ G C  G+ + A+   
Sbjct: 582 NVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER-- 639

Query: 249 VSMESMGC 256
             M  +GC
Sbjct: 640 --MSEIGC 645



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 19/233 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  M+    +P PVS +  ++   +K+   D  LSL KR+   G  P++ +++ +IN   
Sbjct: 501 FQEMVECGLNPNPVS-YTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K  R S    +  +++     P+V+T+T              T+IDGLC+ G    A ++
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYT--------------TLIDGLCRNGRTQFAFKI 605

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M+ +   PN+ TY+S+I G C     +EA+R    M + G +P + T++ ++  LC+
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVSGLCR 661

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+  EA  L+  M + G  PD   Y +LL   C    V+HA ++F S+E+ G
Sbjct: 662 KGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKG 714



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 117/237 (49%), Gaps = 17/237 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++  L+K   +     +  ++   GL P++ T++ LI+  C+ GR    F +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605

Query: 94  LGRILRSCFTPDVVTFTSLIKV-----------------CKPDAITYNTIIDGLCKQGFV 136
              + +    P++ T++SLI                   C+P   TY+T++ GLC++G  
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRF 665

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A++L   MK++   P+   Y S++   C   + + A ++F  +  +G Q ++  +  +
Sbjct: 666 YEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRAL 725

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +  LCK G+++EA +L D M++     D   +  L+DG    G ++   +L   MES
Sbjct: 726 ICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMES 782



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT+I+ L K+G V +A+ +  ++   ++ P+V TYTS+I G C   + + A  
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+ +G  PN VT++ +++ LC  G++DEA  +L+ MI+ G+ P  +TY   +   C
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 237 LTGRVNHAKELFVSMESMGC 256
                  A EL   M+  GC
Sbjct: 315 AIEHEEEAIELVARMKKRGC 334



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 52/83 (62%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ L+ +M++ G+QP+++TFN +++ L K GK+ EA  +L  + Q+ + PD FTY +L+ 
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C    ++ A  +F  M   GC
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGC 264


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 32/267 (11%)

Query: 20  LCIFDYMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST---GLFPDLY 72
           L +FD +LR           + S N  L  +A++     V S F R+  +    + P L+
Sbjct: 41  LHVFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAV-SGFNRMARSSDGAVTPTLH 99

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
           T+ ILI C C+ GR+  GF  LG +++  +  + + FT L+K                  
Sbjct: 100 TYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRR 159

Query: 116 -----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYA 168
                C P   +YN ++ GLC +    +A EL   M D   +  P+VV+Y+++I G    
Sbjct: 160 MTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKE 219

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D ++A   + EM+++G+ P+VVT+N I+  LCK   MD+A  +L+ M+++GV PD  TY
Sbjct: 220 GDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITY 279

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N+++ G+C +G+   A  +   M S G
Sbjct: 280 NSIVHGYCSSGQSKEAIGILEKMCSDG 306



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 16/217 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L   +   G    PD+ ++S +I+   K G     +
Sbjct: 167 PHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                +L     PDVVT              YNTI+  LCK   +DKA ++  +M    V
Sbjct: 227 STYHEMLERGILPDVVT--------------YNTIVAALCKAQAMDKAMDVLNRMVKNGV 272

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+ +TY S++ G+C +    EA  +  +M   GV+P+ VT+  +MD LCKNG+  EA  
Sbjct: 273 MPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARK 332

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +LD MI+ G++P+  TY+TLL G+   G +   ++L 
Sbjct: 333 ILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLL 369



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 21/233 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S++ ++  L K    D   S +  +   G+ PD+ T++ ++   CK   +     
Sbjct: 203 PPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMD 262

Query: 93  VLGRILRSCFTPDVVTFTSLI-----------------KVC----KPDAITYNTIIDGLC 131
           VL R++++   PD +T+ S++                 K+C    +PDA+TY +++D LC
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLC 322

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G   +A+++   M  + +KPNV+TY++++ G+       E + L   M+  G+QP+  
Sbjct: 323 KNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRH 382

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            F++++    K+  +D A  +   M Q  + PD  TY TL+DG C +GRV+ A
Sbjct: 383 VFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R +   P    F+I++    K+++ D  + +F ++    L PD+ T+  LI+  
Sbjct: 368 LLDLMVR-NGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGL 426

Query: 82  CKMGRVSHGFVVL 94
           CK GRV    + L
Sbjct: 427 CKSGRVDDAMLNL 439


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I + M++   +P  V+++  +L   A       + +L   +   G+ PD +  +I 
Sbjct: 244 EAREILNSMIQSRGNPN-VATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  + K GR+    +   ++ +    PD+              I+Y T+IDGLCK G +D
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDI--------------ISYGTMIDGLCKIGRLD 348

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A   F +M D  + P++V +T++I GF     W +A+ LF EMMD+G++P VV F  ++
Sbjct: 349 AAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMI 408

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D+L K GK+ EA +L DLM    V+P+  +YN ++ G+ L G+++   +L   M S+G
Sbjct: 409 DKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVG 466



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 24/219 (10%)

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
           R  S  + P   T++ILI+C C +G ++  F  LG+I+++    + ++FT +++      
Sbjct: 3   RAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEK 62

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--KNVKPNVV 156
                            C PD  +Y  ++ GLC +   ++A +L   M +   +  PNVV
Sbjct: 63  RTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVV 122

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           +YT+VI GF   ++  +A  LF EM+D+G+ P+VVT N I+D LCK   MD+A  +L  M
Sbjct: 123 SYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQM 182

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               + PD  TYN+L+ G+  +G++  A  +   M   G
Sbjct: 183 FDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHG 221



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 37/241 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FNI +    K    D  +  F ++   GL PD+ ++  +I+  CK+GR+      
Sbjct: 294 PDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQ 353

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++    +PD+V FT+LI                     +  +P  + + T+ID L K
Sbjct: 354 FCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFK 413

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +AK LF  M   +VKPNVV+Y ++I G+  A   +E  +L  +M+  G++PN VT
Sbjct: 414 EGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVT 473

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN                +LLD M+  G++PD  T NTL+D  C  GR+     LF  M 
Sbjct: 474 FN----------------TLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREML 517

Query: 253 S 253
           S
Sbjct: 518 S 518



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V S+  ++    K        +LF  +   G+ PD+ T + +I+  CK+  +     
Sbjct: 118 PPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEE 177

Query: 93  VLGRILRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLC 131
           VL ++      PD  T+ SL+             ++ K        P+ +TY+ +ID LC
Sbjct: 178 VLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC 237

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G   +A+E+   M      PNV TY  ++ G+    D  E   L   M+  GV+P+  
Sbjct: 238 KFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHH 297

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            FN+ +    K G++DEA    + M Q G+ PD  +Y T++DG C  GR++ A   F  M
Sbjct: 298 IFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQM 357



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 16/208 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF--PDLYTHSILINCFCKMGRVSHGF 91
           P V S+ ++L  L   K  +  + L   +   G    P++ +++ +I+ F K   V   +
Sbjct: 82  PDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAY 141

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +   +L     PDVVT               N+IIDGLCK   +DKA+E+  +M DK++
Sbjct: 142 TLFCEMLDRGIPPDVVTC--------------NSIIDGLCKVQAMDKAEEVLRQMFDKHI 187

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY S++ G+  +    EA R+  +M   G  PN VT+++++D LCK G   EA  
Sbjct: 188 MPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEARE 247

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           +L+ MIQ    P+  TY  LL G+   G
Sbjct: 248 ILNSMIQSRGNPNVATYGGLLHGYATKG 275


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 13/225 (5%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           +PP V ++   +  L K ++      + + +   GL P++YTH+ LI+  CK+G     F
Sbjct: 247 TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAF 306

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +  ++++S                KP+  TY  +I G C++G + +A+ L ++M ++ +
Sbjct: 307 RLFLKLIKS-------------SSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGL 353

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KPN  TYT++I G C    ++ A  L  +M  +G  PN+ T+N ++D  CK GK+ EA  
Sbjct: 354 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 413

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L +    G++ D  TY  L+   C  G + +A +LF  M   GC
Sbjct: 414 VLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGC 458



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++G   K   +D    L  ++   G  P++YT++ +I+ FCK G++   + V
Sbjct: 355 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 414

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L           + T   L    K D ITY  +I   CKQG +  A +LF +M +    P
Sbjct: 415 L----------RMATSQGL----KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 460

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YTS+I  +C      E+++ F + +  G+ P   T+  ++   CK G+   A  + 
Sbjct: 461 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 520

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + M+Q+G   D+ TY  L+ G C   R+  AK L+  M
Sbjct: 521 ERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGM 558



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V +   ++  L K    +    LF K + S+   P+++T++++I  +C+ G+++   +
Sbjct: 284 PNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEM 343

Query: 93  VLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLC 131
           +L R++     P+  T+T+LI   CK                    P+  TYN +IDG C
Sbjct: 344 LLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 403

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G + +A ++      + +K + +TYT +I   C       A  LF  M++ G  P++ 
Sbjct: 404 KKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIE 463

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  ++   C+  +M+E+    D  +  G+ P   TY +++ G+C  GR   A  +F  M
Sbjct: 464 AYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERM 523

Query: 252 ESMGC 256
              GC
Sbjct: 524 VQNGC 528



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 15/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H  P  V + N +L    +   +     +F  +   G+ PD  +   L+   C+ G+
Sbjct: 137 MRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGK 196

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V     +L  + R  F+ D  T T               ++  LC++G      E F +M
Sbjct: 197 VEEVDALLAAMWRYGFSLDNATCT--------------VVVRSLCEKGRFKDVSEFFRRM 242

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +    PNVV YT+ I G C      +A  +  EM+ +G++PNV T   ++D LCK G  
Sbjct: 243 LETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT 302

Query: 207 DEASSL-LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + A  L L L+     +P+  TY  ++ G+C  G++  A+ L V M   G
Sbjct: 303 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 352



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 26/245 (10%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F+ M +M      P + ++N ++    K         + +   S GL  D  T++ILI  
Sbjct: 377 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITE 436

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------------------PD 119
            CK G +++   +  R++ +   PD+  +TSLI   C+                    P 
Sbjct: 437 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 496

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TY ++I G CK G    A  +F +M       + +TY ++I G C  +   EAK L+ 
Sbjct: 497 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYE 556

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+D+ + P  VT   +  E C+  K   A S+LD + +   R    T + ++      G
Sbjct: 557 GMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDK---RQQVHTVDVVVRKLSALG 613

Query: 240 RVNHA 244
            V+ A
Sbjct: 614 DVDAA 618



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++    + G + +A ++ L+M+   +   V T   V+R       +  A+++F  M   G
Sbjct: 117 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 176

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+  +F  ++   C+ GK++E  +LL  M ++G   D  T   ++   C  GR     
Sbjct: 177 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 236

Query: 246 ELFVSMESMG 255
           E F  M   G
Sbjct: 237 EFFRRMLETG 246


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 13/225 (5%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           +PP V ++   +  L K ++      + + +   GL P++YTH+ LI+  CK+G     F
Sbjct: 139 TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAF 198

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            +  ++++S                KP+  TY  +I G C++G + +A+ L ++M ++ +
Sbjct: 199 RLFLKLIKS-------------SSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGL 245

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KPN  TYT++I G C    ++ A  L  +M  +G  PN+ T+N ++D  CK GK+ EA  
Sbjct: 246 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 305

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L +    G++ D  TY  L+   C  G + +A +LF  M   GC
Sbjct: 306 VLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGC 350



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++G   K   +D    L  ++   G  P++YT++ +I+ FCK G++   +  
Sbjct: 247 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAY-- 304

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++LR   +  +          K D ITY  +I   CKQG +  A +LF +M +    P
Sbjct: 305 --KVLRMATSQGL----------KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 352

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YTS+I  +C      E+++ F + +  G+ P   T+  ++   CK G+   A  + 
Sbjct: 353 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 412

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + M+Q+G   D+ TY  L+ G C   R+  AK L+  M
Sbjct: 413 ERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGM 450



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V +   ++  L K    +    LF K + S+   P+++T++++I  +C+ G+++   +
Sbjct: 176 PNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEM 235

Query: 93  VLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLC 131
           +L R++     P+  T+T+LI   CK                    P+  TYN +IDG C
Sbjct: 236 LLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 295

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G + +A ++      + +K + +TYT +I   C       A  LF  M++ G  P++ 
Sbjct: 296 KKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIE 355

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  ++   C+  +M+E+    D  +  G+ P   TY +++ G+C  GR   A  +F  M
Sbjct: 356 AYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERM 415

Query: 252 ESMGC 256
              GC
Sbjct: 416 VQNGC 420



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H  P  V + N +L    +   +     +F  +   G+ P       L+   C+ G+
Sbjct: 29  MRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGK 88

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V     +L  + R  F+ D  T T               ++  LC++G      E F +M
Sbjct: 89  VEEVDALLAAMWRYGFSLDNATCT--------------VVVRSLCEKGRFKDVSEFFRRM 134

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +    PNVV YT+ I G C      +A  +  EM+ +G++PNV T   ++D LCK G  
Sbjct: 135 LETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT 194

Query: 207 DEASSL-LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + A  L L L+     +P+  TY  ++ G+C  G++  A+ L V M   G
Sbjct: 195 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 244



 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 26/245 (10%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F+ M +M      P + ++N ++    K         + +   S GL  D  T++ILI  
Sbjct: 269 FELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITE 328

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------------------PD 119
            CK G +++   +  R++ +   PD+  +TSLI   C+                    P 
Sbjct: 329 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 388

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TY ++I G CK G    A  +F +M       + +TY ++I G C  +   EAK L+ 
Sbjct: 389 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYE 448

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+D+ + P  VT   +  E C+  K   A S+LD + +   R    T + ++      G
Sbjct: 449 GMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDK---RQQVHTVDVVVRKLSALG 505

Query: 240 RVNHA 244
            V+ A
Sbjct: 506 DVDAA 510



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++    + G + +A ++ L+M+   +   V T   V+R       +  A+++F  M   G
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P    F  ++   C+ GK++E  +LL  M ++G   D  T   ++   C  GR     
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 246 ELFVSMESMG 255
           E F  M   G
Sbjct: 129 EFFRRMLETG 138


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 131/250 (52%), Gaps = 25/250 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++   SP   +S + +LG   ++K  D+   +F+ + +     +  +++ LI+  C+ G
Sbjct: 218 MIQAGLSPDYFTSTSFILG-YCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAG 272

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------PDAITYNT 125
           R+     +  R+   C  P+V T+T+LIK +C+                   PD ITYN+
Sbjct: 273 RIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDEMLERNLVPDLITYNS 332

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G C+ G +D A  L   MK++ + P+  TY   I   C +N   EA+RLF  + ++G
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V  NV+ ++V++D  CK GK+DEA  L + M+     P+A+T+N L+ G C  G +  A 
Sbjct: 393 VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEAL 452

Query: 246 ELFVSMESMG 255
            LF  M  MG
Sbjct: 453 SLFDQMVKMG 462



 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 18/234 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L  LA+    D +  L+  +    +  D+YT +++IN +CKMG V      + +++
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 99  RSCFTPDVVTFTSLI-KVCKP----------------DAITYNTIIDGLCKQGFVDKAKE 141
           ++  +PD  T TS I   C+                 + ++YN +I GLC+ G +D+A  
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVS 279

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF++MKD    PNV TYT++I+G C  N  ++A  L  EM+++ + P+++T+N ++   C
Sbjct: 280 LFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQC 338

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G +D A  LL LM + G+ PD  TY   +D  C + RV  A+ LF S+   G
Sbjct: 339 RAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ + D ML  +  P  ++ +N ++    +  H D+   L   +   GL PD  T+  
Sbjct: 309 HKAMGLLDEMLERNLVPDLIT-YNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGC 367

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I+  CK  RV        R L    T + V+          + I Y+ +IDG CK G V
Sbjct: 368 FIDFLCKSNRVEEA-----RRLFDSLTEEGVS---------ANVIMYSVLIDGYCKVGKV 413

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  LF KM  KN  PN  T+ ++I G C A +  EA  LF +M+  G++P V TFN++
Sbjct: 414 DEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNIL 473

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + K G  D+A   L  M+  G +P A TYN  ++ +C  G+V  A+++ V M+  G
Sbjct: 474 IGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 51/288 (17%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +FD M++M   P  V +FNI++G + K   +D      +++ S+G  P   T++  
Sbjct: 450 EALSLFDQMVKMGLKPT-VYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAF 508

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I  +C  G+V     ++ ++      PD  T+TSLIK                      C
Sbjct: 509 IEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADC 568

Query: 117 KPDAITYNTIIDGLCKQGFV-----------------------------DKAKELFLKMK 147
           +P   T+ ++I  L  + +V                             D   ELF +M+
Sbjct: 569 EPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEME 628

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
                P+   Y  +I G C   +   A +L  +M  +G+ P+ + FN ++   CK  K  
Sbjct: 629 KHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYG 688

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           EA+++++ MI  G  P      TL+ G    G       +F  +   G
Sbjct: 689 EAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCG 736



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++   +  L K+   +    LF  L   G+  ++  +S+LI+ +CK+G+V     +
Sbjct: 360 PDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCL 419

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
             ++L    +P+  TF +LI  +C                    KP   T+N +I  + K
Sbjct: 420 FEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLK 479

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG  D A +   KM     KP   TY + I  +C A    EA+ + ++M ++GV P+  T
Sbjct: 480 QGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFT 539

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +  ++    K G    A  +L  M      P   T+ +L+
Sbjct: 540 YTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLI 579



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 93  VLGRILRSCFT-PDVVTFTSLIKVCKPDAIT------YNTIIDGLCKQGFVDKAKELFLK 145
           ++  +++ C++ PD +  + + +    D IT      YN ++  L + G VD+  +L+ +
Sbjct: 123 IIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTE 182

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M ++ V  ++ T+  +I  +C      EAK+   +M+  G+ P+  T    +   C++  
Sbjct: 183 MLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKD 242

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D A  + + M       +  +YN L+ G C  GR++ A  LFV M+   C
Sbjct: 243 VDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCC 289



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 36  VSSFNIMLGC-LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           VS+F  + G  + K   +D V+ LF+ +   G  PD   +  LI+  CK+  +     +L
Sbjct: 600 VSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLL 659

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
            ++ +   +P  + F              N +I   CK     +A  +   M      P 
Sbjct: 660 DQMQKEGISPSEMVF--------------NAVISCCCKLQKYGEAANIVEDMICSGHSPQ 705

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           +    ++I G     +      +F ++   G   + + + +++D + K G ++E S L +
Sbjct: 706 LEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFE 765

Query: 215 LMIQHGVRPDAFTYNTL 231
            M ++G      TY+ L
Sbjct: 766 EMEKNGCNFSPRTYSIL 782



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 77/179 (43%), Gaps = 15/179 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M + H   P    +  ++  + K ++    L L  ++   G+ P     + +I+C 
Sbjct: 623 LFEEMEK-HGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCC 681

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK+ +      ++  ++ S  +P        ++ CK       T+I GL ++G  ++   
Sbjct: 682 CKLQKYGEAANIVEDMICSGHSPQ-------LEHCK-------TLICGLYEEGETERGNS 727

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +F K++      + + +  +I G        E  +LF EM   G   +  T++++  +L
Sbjct: 728 VFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+  F  M R    P    S N +L   AK    D V   FK +   G  P ++T++I+
Sbjct: 78  EAIQCFSKMKRFRVFPK-TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIM 136

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KV-----------------C 116
           I+C CK G V     +   +      PD VT+ S+I    KV                 C
Sbjct: 137 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD ITYN +I+  CK G +    E + +MK   +KPNVV+Y++++  FC      +A +
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK 256

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            +++M   G+ PN  T+  ++D  CK G + +A  L + M+Q GV  +  TY  L+DG C
Sbjct: 257 FYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC 316

Query: 237 LTGRVNHAKELFVSMESMG 255
              R+  A+ELF  M++ G
Sbjct: 317 DAERMKEAEELFGKMDTAG 335



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 56/280 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V ++NIM+ C+ K    +    LF+ +   GL PD  T++ +I+ F K+GR+    
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
                +   C  PDV+T+ +LI                        KP+ ++Y+T++D  
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 245

Query: 131 CKQGFVDKAKELFLKMK---------------DKN--------------------VKPNV 155
           CK+G + +A + ++ M+               D N                    V+ NV
Sbjct: 246 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 305

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYT++I G C A    EA+ LF +M   GV PN+ ++N ++    K   MD A  LL+ 
Sbjct: 306 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 365

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   G++PD   Y T + G C   ++  AK +   M+  G
Sbjct: 366 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 405



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ +C F+ M  M    P V ++N ++ C  K       L  ++ +   GL P++ ++S 
Sbjct: 182 DDTVCFFEEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 240

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----PDA----------- 120
           L++ FCK G +         + R    P+  T+TSLI   CK     DA           
Sbjct: 241 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 300

Query: 121 -----ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                +TY  +IDGLC    + +A+ELF KM    V PN+ +Y ++I GF  A + + A 
Sbjct: 301 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 360

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  E+  +G++P+++ +   +  LC   K++ A  +++ M + G++ ++  Y TL+D +
Sbjct: 361 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 420

Query: 236 CLTGRVNHAKELFVSMESM 254
             +G       L   M+ +
Sbjct: 421 FKSGNPTEGLHLLDEMKEL 439



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    F+ +   L      +  +  F ++    +FP   + + L++ F K+G+       
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGK------- 110

Query: 94  LGRILRSCFTPDVVTF-TSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                    T DV  F   +I    +P   TYN +ID +CK+G V+ A+ LF +MK + +
Sbjct: 111 ---------TDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 161

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+ VTY S+I GF      ++    F EM D   +P+V+T+N +++  CK GK+     
Sbjct: 162 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 221

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               M  +G++P+  +Y+TL+D FC  G +  A + +V M  +G
Sbjct: 222 FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 265



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    K       +  +  +   GL P+ YT++ LI+  CK+G +S  F +
Sbjct: 233 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 292

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L+     +VVT+T+LI  +C                     P+  +YN +I G  K
Sbjct: 293 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 352

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A EL  ++K + +KP+++ Y + I G C       AK +  EM + G++ N + 
Sbjct: 353 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 412

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  +MD   K+G   E   LLD M +  +     T+  L+DG C    V+ A + F
Sbjct: 413 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 468



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+N ++    K K+ D  L L   L   G+ PDL  +   I   C + ++    VV
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPD-----------------AITYNTIIDGLCK 132
           +  +       + + +T+L+    K   P                   +T+  +IDGLCK
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457

Query: 133 QGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
              V KA + F ++  D  ++ N   +T++I G C  N    A  LF +M+ +G+ P+  
Sbjct: 458 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 517

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +MD   K G + EA +L D M + G++ D   Y +L+ G     ++  A+     M
Sbjct: 518 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 577

Query: 252 ESMG 255
              G
Sbjct: 578 IGEG 581



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           VC P    ++ +   L   G +++A + F KMK   V P   +   ++  F      ++ 
Sbjct: 55  VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 114

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           KR F +M+  G +P V T+N+++D +CK G ++ A  L + M   G+ PD  TYN+++DG
Sbjct: 115 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 174

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           F   GR++     F  M+ M C
Sbjct: 175 FGKVGRLDDTVCFFEEMKDMCC 196



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
           P E L + D M  +      V +F +++  L KNK     +  F R+ N  GL  +    
Sbjct: 426 PTEGLHLLDEMKELDIEVT-VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIF 484

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + +I+  CK  +V     +  ++++    PD                 Y +++DG  KQG
Sbjct: 485 TAMIDGLCKDNQVEAATTLFEQMVQKGLVPD--------------RTAYTSLMDGNFKQG 530

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A  L  KM +  +K +++ YTS++ G  + N   +A+    EM+ +G+ P+ V   
Sbjct: 531 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 590

Query: 195 VIMDELCKNGKMDEASSLLDLMIQH 219
            ++ +  + G +DEA  L   +++H
Sbjct: 591 SVLKKHYELGCIDEAVELQSYLMKH 615


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 63/296 (21%)

Query: 16  PNEALCIFDYMLRMHPSP----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           P  A+ +F+        P    P   ++ I++ C  +    +  L+ F +L  TGL  D+
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDI 146

Query: 72  YTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK---------------- 114
              + L+  FC+  R      ++L R       PDV +++ L+K                
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 115 -------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                  VC PD + YNT+IDG  K+G V+KA +LF +M  + + P+ VTY+SV+   C 
Sbjct: 207 MMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCK 266

Query: 168 A-----------------------------------NDWNEAKRLFIEMMDQGVQPNVVT 192
           A                                     W EA R+F EM  Q + P+VVT
Sbjct: 267 ARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVT 326

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           FN++M  LCK GK+ EA  + D M   G  PD F+YN +L+G+   G +    +LF
Sbjct: 327 FNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 135/268 (50%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R     P V +FN+++G L K         +F  +   G  
Sbjct: 298 GYSSTGQWKEAVRVFKEM-RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     P + TF  LIK              
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KP+ +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 417 FNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G+  ++V F+ I++ LCK G++ +A ++ DL +  G+ P A  
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVV 536

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Y+ L+DG+CL G++  A  +F +M S G
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAG 564



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+NIML   A       +  LF  +   G+ P + T ++L
Sbjct: 342 EARDVFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVL 400

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      P+V+T+T++I  +C+                   
Sbjct: 401 IKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 460

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   Y+ +I G C  G + KAKEL  ++ +  +  ++V ++S+I   C      +A+ 
Sbjct: 461 APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQN 520

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F   ++ G+ P  V ++++MD  C  GKM++A  + D M+  G+ P+   Y TL++G+C
Sbjct: 521 IFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYC 580

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++    LF  M   G
Sbjct: 581 KIGRIDEGLSLFREMLQKG 599



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y +  
Sbjct: 411 DKAMIIFNEM-RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +     ++  I+ +    D+V F+S              II+ LCK G V
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSS--------------IINNLCKLGRV 515

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ +F    +  + P  V Y+ ++ G+C      +A R+F  M+  G++PN V +  +
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTL 575

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G++DE  SL   M+Q G++P    YN ++DG    GR   AK  F  M   G
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  +A+              ++LF R  S 
Sbjct: 42  TLRPEEAHDLLDELQR-RGTPVLERDLNGFLAAIARAPSSAACRSGPALAVALFNRAASR 100

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  +T++IL++C  +  R        G++LR+    D++    L+K      
Sbjct: 101 AQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAK 160

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +Y+ ++  LC QG   +A +L   M +      P+VV
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVV 220

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P+ VT++ ++  LCK   MD+A + L  M
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +A  IFD  + +   P  V    +M G CL      +  L +F  + S G+ P+   +  
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK--MEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N +CK+GR+  G  +   +L+              K  KP  I YN IIDGL + G  
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQ--------------KGIKPSTILYNIIIDGLFEAGRT 620

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK  F +M +  +  N  TY+ V+RG      ++EA  LF E+    V+ +++T N +
Sbjct: 621 VPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM 680

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  + +  +++EA  L   + + G+ P   TY+ ++      G V  A+++F SM++ GC
Sbjct: 681 IAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 740



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD M+     P  V  +  ++    K    D  LSLF+ +   G+ P    ++I
Sbjct: 551 EKALRVFDAMVSAGIEPNDVV-YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609

Query: 77  LINCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV- 115
           +I+   + GR                     ++  V+ G     CF   +  F  L  + 
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D IT NT+I G+ +   V++AK+LF  +    + P VVTY+ +I          EA+
Sbjct: 670 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M + G +P+    N ++ EL K  ++  A + L  + +     +  T   L+D F
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 789

Query: 236 CLTG 239
              G
Sbjct: 790 SSKG 793



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I+L  L KN+ +D  + LFK L +  +  D+ T + +I    +  RV     +   I
Sbjct: 641 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 700

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P VVT              Y+ +I  L K+G V++A+++F  M++   +P+   
Sbjct: 701 SRSGLVPCVVT--------------YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 746

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
              V+R     N+   A     ++ ++      +T  +++D     G   E
Sbjct: 747 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCRE 797


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L +       + + +++   G  P+  +++ L++ FCK  ++      
Sbjct: 187 PSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEY 246

Query: 94  LGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           LG++  R C+ PD+VT+ +L+                     K C P  ITYNT+IDGL 
Sbjct: 247 LGKMTSRGCY-PDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 305

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D+A +L  +M+ K +KP+++TY+S++ G       +EA + F ++   GV+PN +
Sbjct: 306 KVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAI 365

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T+N IM  LCK  K D A   L  M+Q G +P   +Y  L++G    G    A EL 
Sbjct: 366 TYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  +     +     L   +   G  P + T +ILIN  C+ G +     V
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++ +   TP+ +++  L+                     + C PD +TYNT++  LCK
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCK 271

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++  K   P ++TY +VI G       ++A +L  EM  +G++P+++T
Sbjct: 272 DGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIIT 331

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  L + GK+DEA      +   GV+P+A TYN ++ G C   + + A +    M 
Sbjct: 332 YSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMV 391

Query: 253 SMGC 256
             GC
Sbjct: 392 QRGC 395



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 21/215 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------ 115
           +  +G  PD+ T+++LI+  C  GR      +L  ++R   +P VVTF  LI        
Sbjct: 145 IEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGL 204

Query: 116 ---------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                          C P++++YN ++ G CK+  +++A E   KM  +   P++VTY +
Sbjct: 205 LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           ++   C     + A  L  ++  +G  P ++T+N ++D L K GK D+A+ LLD M   G
Sbjct: 265 LLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++PD  TY++L+ G    G+V+ A + F  +E +G
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLG 359



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 29/255 (11%)

Query: 30  HPSPPPVSSF--------NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           H S  P+ S         N  L  L +N   +      + +   G  PD+   + LI  F
Sbjct: 70  HVSLSPIHSLTNFEEIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGF 129

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK+G+      ++  I  S   PDV+T+  LI                     + C P  
Sbjct: 130 CKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSV 189

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +T+N +I+ LC++G + +A ++  KM      PN ++Y  ++ GFC       A     +
Sbjct: 190 VTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGK 249

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +G  P++VT+N ++  LCK+GK+D A  LL+ +   G  P   TYNT++DG    G+
Sbjct: 250 MTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGK 309

Query: 241 VNHAKELFVSMESMG 255
            + A +L   M + G
Sbjct: 310 TDQAAKLLDEMRAKG 324



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G +  GF  L  ++     PD++  TSLI+              G CK G   KA  +  
Sbjct: 98  GELEEGFRFLESMVYRGDIPDIIPCTSLIR--------------GFCKIGKTRKATRIME 143

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            ++D    P+V+TY  +I G C    W +A++L  +M+ +G  P+VVTFN++++ LC+ G
Sbjct: 144 IIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKG 203

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +  A  +L+ M +HG  P++ +YN LL GFC   ++  A E    M S GC
Sbjct: 204 LLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGC 255



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 21/213 (9%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   S+N +L    K K  +  +    ++ S G +PD+ T++ L+   CK G+V  
Sbjct: 218 HGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDA 277

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              +L ++     +P ++T+ ++I                     K  KPD ITY++++ 
Sbjct: 278 AVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVG 337

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GL ++G VD+A + F  ++   VKPN +TY +++ G C A   + A      M+ +G +P
Sbjct: 338 GLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKP 397

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
              ++ ++++ L   G   EA  LL+ +   GV
Sbjct: 398 TEASYTILIEGLAYEGLAKEALELLNELCLRGV 430


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L          +L  ++   GL  D+ T+  ++N  CKMG       +
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++  +                KPD + Y+ IID LCK G    A+ LF +M +K + P
Sbjct: 68  LSKMEETHI--------------KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 113

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TY  +I GFC    W++A+RL  +M+++ + P+V+TFN ++    K GK+ EA  L 
Sbjct: 114 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 173

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           D M+   + PD  TYN+++ GFC   R + AK +F  M S
Sbjct: 174 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 213



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 53/289 (18%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M   H  P  V  ++ ++  L K+ H+     LF  +   G+ P+++T++ +I
Sbjct: 64  ALNLLSKMEETHIKPDVVI-YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 122

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVC--------- 116
           + FC  GR S    +L  ++     PDV+TF +LI             K+C         
Sbjct: 123 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 182

Query: 117 ------------------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                                          PD +T+NTIID  C+   VD+  +L  ++
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             + +  N  TY ++I GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K+
Sbjct: 243 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 302

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA  L +++    +  D   YN ++ G C   +V+ A +LF S+   G
Sbjct: 303 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 351



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 30/260 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E LC  D ML     P  V+ +N M+    K+  +D    +F  + S    PD+ T + +
Sbjct: 170 EKLC--DEMLHRCIFPDTVT-YNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTI 222

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------V 115
           I+ +C+  RV  G  +L  I R     +  T+ +LI                       V
Sbjct: 223 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 282

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD IT N ++ G C+   +++A ELF  ++   +  + V Y  +I G C  +  +EA 
Sbjct: 283 C-PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 341

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  +   GV+P+V T+NV++   C    + +A+ L   M  +G  PD  TYNTL+ G 
Sbjct: 342 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 401

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G ++ + EL   M S G
Sbjct: 402 LKAGEIDKSIELISEMRSNG 421



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD M     + P V +FN ++    + K  D  + L + ++  GL  +  T++ 
Sbjct: 202 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVCK 117
           LI+ FC++  ++    +   ++     PD +T                      +I++ K
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 316

Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            D   + YN II G+CK   VD+A +LF  +    V+P+V TY  +I GFC  +  ++A 
Sbjct: 317 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 376

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            LF +M D G +P+  T+N ++    K G++D++  L+  M  +G   DAFT   + D
Sbjct: 377 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 35/141 (24%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-------------------- 185
           M +  + P V+T+ ++I G C      EA  L  +M+ +G                    
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 186 ---------------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
                          ++P+VV ++ I+D LCK+G   +A  L   M++ G+ P+ FTYN 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 231 LLDGFCLTGRVNHAKELFVSM 251
           ++DGFC  GR + A+ L   M
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDM 141


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +FD ML      P    +N ++G        D  L   + +   G+   + T+++
Sbjct: 200 EDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNL 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR S  + VL  + R+  +PDV               TYN +I+G CK+G  
Sbjct: 260 LVHALFMDGRASDAYAVLEEMQRNGLSPDV--------------FTYNILINGYCKEGNE 305

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F +M  K V+   VTYTS+I  F       E  RLF   + +G++P+VV +N +
Sbjct: 306 KKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C  G M+ A  ++  M +  + PD  TYNTL+ GFCL GR++ A+ L   M   G
Sbjct: 366 INSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRG 424



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 29/221 (13%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +       ++ + +   GL PD++T++ILIN +CK G       V  
Sbjct: 254 VATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFE 313

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R       VT+TSLI                     K  +PD + YN +I+  C  G
Sbjct: 314 EMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGG 373

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +++A E+  +M+ K + P+ VTY ++IRGFC     +EA+ L  EM  +G+QP++    
Sbjct: 374 DMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDL---- 429

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                LCKNG+ D+A +L+  M+  G+ PD  TY +L++G 
Sbjct: 430 ----GLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGL 466



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 55/295 (18%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD 70
           + ++ + ALC    +  +  SP   S  +++L   A  + + T L  + +L S  +  P 
Sbjct: 29  SALSADRALCPLSVLPHLAASP---SLPHLLLTASAAARPHATSLRFYAQLKSLSVPIPV 85

Query: 71  LYTHSILINC--------FCKMGRV-----SHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
              H +L +         F  + R+     +  F ++ R L +   P V     L ++ +
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKP-VRALELLRQMPR 144

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+A+TYNT+I G C +G V  A E+  +M+++  + P+  TY ++I G+C      +A +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAK 204

Query: 177 LFIEMMDQG-VQPNVVTFNVIMDELCKNGKMD---------------------------- 207
           +F EM+ QG V P+ V +N ++   C  GK+D                            
Sbjct: 205 VFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHAL 264

Query: 208 -------EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                  +A ++L+ M ++G+ PD FTYN L++G+C  G    A E+F  M   G
Sbjct: 265 FMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKG 319


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 21/233 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K + +     LF R+   GL P+  T+SILI+ FC+ G++      
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG ++ +     V  + SLI                     K  +P  +TY +++ G C 
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++KA  L+ +M  K + P++ T+T+++ G   A    +A +LF EM +  V+PN VT
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVT 544

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           +NV+++  C+ G M +A   L  M + G+ PD ++Y  L+ G CLTG+ + AK
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK 597



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M ++   P  V+ ++I++    +    DT LS    +  TGL   +Y ++ 
Sbjct: 384 HEAELLFDRMGKIGLRPNDVT-YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  CK G +S     +  ++     P VVT+TSL+                     K 
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   T+ T++ GL + G +  A +LF +M + NVKPN VTY  +I G+C   D ++A 
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAF 562

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               EM ++G+ P+  ++  ++  LC  G+  EA   +D + +     +   Y  LL GF
Sbjct: 563 EFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGF 622

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G++  A  +   M   G
Sbjct: 623 CREGKLEEALSVCQEMVQRG 642



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 56/290 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           + + +F  M+      P V + + +L  L K +H+   + LF  + S G+ PD+Y ++ +
Sbjct: 174 DGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGV 233

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I   C++  +S    ++  +  +    ++V +  LI                     K  
Sbjct: 234 IRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDL 293

Query: 117 KPDAITYNTIIDGLC-----------------------------------KQGFVDKAKE 141
           KPD +TY T++ GLC                                   K+G +++A  
Sbjct: 294 KPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALN 353

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  ++ D  V PN+  Y ++I   C    ++EA+ LF  M   G++PN VT+++++D  C
Sbjct: 354 LVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFC 413

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + GK+D A S L  M+  G++   + YN+L++G C  G ++ A+     M
Sbjct: 414 RRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 49/252 (19%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + +++    K+K       L K ++  GL PD   ++ +I+   K G     F +   ++
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                          + C P+ +TY  +I+GLCK GFV++A+ L  KM+  +  PN VTY
Sbjct: 710 N--------------EGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTY 755

Query: 159 -----------------------------------TSVIRGFCYANDWNEAKRLFIEMMD 183
                                                +IRGFC      EA  L   M+ 
Sbjct: 756 GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            GV P+ +T+  +++ELC+   + +A  L + M + G+RPD   YNTL+ G C+ G +  
Sbjct: 816 DGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875

Query: 244 AKELFVSMESMG 255
           A EL   M   G
Sbjct: 876 ATELRNEMLRQG 887



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 23/231 (9%)

Query: 23  FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           F  +  MH     P    +  M+   +K   +     ++  + + G  P+  T++ +IN 
Sbjct: 667 FGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVING 726

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTF---------------------TSLIKVCKPD 119
            CK G V+   V+  ++      P+ VT+                      +++K    +
Sbjct: 727 LCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLAN 786

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TYN +I G C+QG +++A EL  +M    V P+ +TYT++I   C  ND  +A  L+ 
Sbjct: 787 TATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWN 846

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            M ++G++P+ V +N ++   C  G+M +A+ L + M++ G+ P+  T  T
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 21/241 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P + +F  +L  L +       + LF  +    + P+  T++++I  +C+ G +S  F 
Sbjct: 504 APSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFE 563

Query: 93  VLGRILRSCFTPDVVTFTSLI------------KV---------CKPDAITYNTIIDGLC 131
            L  +      PD  ++  LI            KV         C+ + I Y  ++ G C
Sbjct: 564 FLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFC 623

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G +++A  +  +M  + V  ++V Y  +I G     D      L  EM D+G++P+ V
Sbjct: 624 REGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDV 683

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  ++D   K G   EA  + DLMI  G  P+  TY  +++G C  G VN A+ L   M
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKM 743

Query: 252 E 252
           +
Sbjct: 744 Q 744



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P V T + ++  L K      A  L + M+  G+RPD + Y  ++   C    ++ AKE+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 248 FVSMESMGC 256
              ME+ GC
Sbjct: 250 IAHMEATGC 258


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E + IF  M R     P V ++ +++  L ++      ++LF  +   G  P+++T+++
Sbjct: 56  DEGINIFKKM-REDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTV 114

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +IN  CK  ++  G  +L  ++     P V T              YN +IDG CK+G V
Sbjct: 115 MINAMCKETKLEEGRRILDEMVEKGLVPSVPT--------------YNALIDGYCKEGMV 160

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A+E+   M   +  PN  TY  +I GFC   + + A  L  +M++  + P+VVT+N +
Sbjct: 161 EAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSL 220

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   CK G +D A  LL+LM ++GV PD +TY+  +D  C  GR+  A  LF S++  G
Sbjct: 221 IHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKG 279



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ +   ML    +P  V ++N ++    K  + D+   L   +N  G+ PD +T+S+
Sbjct: 196 HRAMALLSKMLESRLTPS-VVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+  CK GR+    V+   +       + V +T+LI                     + 
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P++ TYN +IDGLCK+  V +A  L   M  K +K  V TYT +I       D++ A 
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAH 374

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+  +M+  G QP+V  +   +   C  G + EA  ++ +M + GV PDA TY  ++D +
Sbjct: 375 RILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAY 434

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G +N A ++   M   GC
Sbjct: 435 GGLGLLNPAFDVLKRMFDTGC 455



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    +    +   ++S    P+  T++ LI  FC+   V     +
Sbjct: 142 PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMAL 201

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++L S  TP VVT+ SLI   CK                    PD  TY+  ID LCK
Sbjct: 202 LSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK 261

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +++A  LF  +K+K +K N V YT++I G+C A   ++A  L   M+ +   PN  T
Sbjct: 262 KGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSST 321

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK  K+ EA  L++ MIQ G++    TY  L+      G  ++A  +   M 
Sbjct: 322 YNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMV 381

Query: 253 SMG 255
           S G
Sbjct: 382 SSG 384



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M R     P + ++ +M+  + K    +    +   +   GL P + T++ L
Sbjct: 92  EAINLFSEM-RERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNAL 150

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ +CK G V     +L  +  +   P+  T+  LI   C+                   
Sbjct: 151 IDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRL 210

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +TYN++I G CK G++D A  L   M +  V P+  TY+  I   C      EA  
Sbjct: 211 TPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANV 270

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  + ++G++ N V +  ++D  CK GKMD+A+SLLD M+     P++ TYN L+DG C
Sbjct: 271 LFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLC 330

Query: 237 LTGRVNHAKELFVSMESMG 255
              +V  A  L  SM   G
Sbjct: 331 KERKVQEALLLMESMIQKG 349



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLI-----KVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +G+  LG ++ +    DV +  S+      K C+ + ++Y  +I GLC+ G VD+   +F
Sbjct: 3   NGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIF 62

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            KM++ +  P V TYT ++     +    EA  LF EM ++G +PN+ T+ V+++ +CK 
Sbjct: 63  KKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKE 122

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K++E   +LD M++ G+ P   TYN L+DG+C  G V  A+E+   M S  C
Sbjct: 123 TKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSC 175



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 43/251 (17%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++N ++  L K +     L L + +   GL   + T++ILI    K G   +   +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L +++ S + PDV  +T+ I                 C +G + +A+++   M ++ V P
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIH--------------AFCTRGNIKEAEDMMSMMFERGVMP 422

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG--------- 204
           + +TYT VI  +      N A  +   M D G  P+  T++ ++  L K           
Sbjct: 423 DALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVA 482

Query: 205 --------------------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
                               K + A  L + M++HG  P+  TY  L+ G C  GR+  A
Sbjct: 483 LCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVA 542

Query: 245 KELFVSMESMG 255
           ++LF  M   G
Sbjct: 543 QKLFDHMNERG 553



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVS-HGFVVLGRILRSCFTPDVVTFTSLIKV- 115
           + KR+  TG  P  +T+S LI    K      +  V L   + + F  DV     ++K  
Sbjct: 446 VLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFE 505

Query: 116 -------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                        C P+  TY  +I GLCK G +  A++LF  M ++ V P+   Y S++
Sbjct: 506 TALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLL 565

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
              C    + +A RL   MM+ G  P + + NV+   L + G  ++A  +   ++Q G  
Sbjct: 566 NCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYN 625

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            D   +  L+DG    G  +   EL   ME+ GC
Sbjct: 626 DDEVAWKILIDGLLKNGLSDGCSELLGVMEARGC 659



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ ML  H   P ++++  ++  L K         LF  +N  G+ P    ++ L+
Sbjct: 507 ALELFEKMLE-HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLL 565

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDV--------------------VTFTSLIKVC-K 117
           NC C++G       ++G ++     P +                    V F++L++    
Sbjct: 566 NCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYN 625

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
            D + +  +IDGL K G  D   EL   M+ +  + +  TY  +I G 
Sbjct: 626 DDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 18/226 (7%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++NIM+ C+ K    +    LF+ +   GL PD  T++ +I+ + K+GR+    
Sbjct: 129 SKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD--- 185

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
                        D V F   +K   C+PD ITYN++I+  CK G + K  E + +MK  
Sbjct: 186 -------------DTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQS 232

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KPNVV+Y++++  FC  +   +A + +++M   G  PN  T+  ++D  CK G + +A
Sbjct: 233 GLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDA 292

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L + M++ GV  +  TY  L+DG C   R+  A++LF  M + G
Sbjct: 293 FRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAG 338



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +F+ M +     P   ++N M+    K    D  +  F+ + S   
Sbjct: 146 EGDIEA-----ARGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+ T++ LINCFCK G++  G      + +S   P+VV++++L+   CK         
Sbjct: 200 EPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIK 259

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P+  TY +++D  CK G +  A  L  +M +  V+ NVVTYT++I G C
Sbjct: 260 FYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLC 319

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A    EA++LF +M+  GV PN+ ++N ++    K   MD A  LL+ +   G++PD  
Sbjct: 320 DAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLL 379

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y T + G C   ++  AK +   M+  G
Sbjct: 380 LYGTFIWGLCGLEKIEAAKVVMNEMQENG 408



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 21/242 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++ C  K+      L  ++ +  +GL P++ ++S L++ FCK   +      
Sbjct: 201 PDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKF 260

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK----PDA----------------ITYNTIIDGLCK 132
              + R    P+  T+TSL+   CK     DA                +TY  +IDGLC 
Sbjct: 261 YVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCD 320

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A++LF KM    V PN+ +Y ++I GF  A + + A  L  E+  +G+QP+++ 
Sbjct: 321 AERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLL 380

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   +  LC   K++ A  +++ M ++G++ +   Y TL+D +  +G       L   M+
Sbjct: 381 YGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQ 440

Query: 253 SM 254
            +
Sbjct: 441 EL 442



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 22/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+N ++    K K+ D  L L   L   G+ PDL  +   I   C + ++    VV
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPD-----------------AITYNTIIDGLCK 132
           +  +  +    + + +T+L+    K   P                   +T+  +IDGLCK
Sbjct: 401 MNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460

Query: 133 QGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
              V KA + F +M  D  ++PN   YT++I G C  N    A  LF +M  +G+ P+  
Sbjct: 461 NKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRT 520

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +MD   K G M EA +L D M + G++ D   Y +L+ GF    ++  A+     M
Sbjct: 521 AYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM 580



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%)

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
           S   VC P    ++ +   L   G +++A + F KMK   V P   +   ++  F     
Sbjct: 54  STRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGK 113

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            +  KR F +M+  G +P V T+N+++D + K G ++ A  L + M   G+ PD  TYN+
Sbjct: 114 TDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNS 173

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           ++DG+   GR++     F  M+SM C
Sbjct: 174 MIDGYGKVGRLDDTVYFFEEMKSMSC 199



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P   + N ++    K G  D  K  F  M     KP V TY  +I       D   A+ L
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM  +G+ P+ VT+N ++D   K G++D+     + M      PD  TYN+L++ FC 
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 238 TGRVNHAKELFVSMESMG 255
           +G++    E +  M+  G
Sbjct: 216 SGKLPKGLEFYREMKQSG 233



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
           P E L + + M  +      V +F +++  L KNK     +  F R+ N  GL P+   +
Sbjct: 429 PTEGLHLLEEMQEL-DHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVY 487

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + +I+  CK  +V     +  ++ +    PD   +TSL+              DG  KQG
Sbjct: 488 TAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM--------------DGNLKQG 533

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A  L  KM +  +K +++ YTS++ GF   N   +A+    EM+ + + P+ V   
Sbjct: 534 NMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCI 593

Query: 195 VIMDELCKNGKMDEASSLLDLMIQH 219
            ++ +  + G +DEA  L   +++H
Sbjct: 594 GVLKKHYELGCIDEAVGLQSYLMKH 618


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    K    +    +  R+ + G  PD+ T++I+I   C   ++     V
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
           L ++L     P V+T+T LI+                        PD  TYN II G+CK
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D+ ++L  +M  +  +PN VTY+ +I   C     +EA  +   M+++ + P+  +
Sbjct: 255 EGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 314

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LCK G++D A  ++D MI +G  PD   YNT+L   C  G  N A E+F  + 
Sbjct: 315 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 374

Query: 253 SMGC 256
            MGC
Sbjct: 375 GMGC 378



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------C 116
           L+N  CK G+ +     L  ++   +TPDV+  T LIK                      
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD   YN +I G CK   ++ A ++  +MK +   P++VTY  +I   C       A +
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +++     P V+T+ ++++     G ++EA  LL+ M+  G+ PD +TYN ++ G C
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  +  ++L   M S GC
Sbjct: 254 KEGMWDEGEKLVAEMFSRGC 273


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA CIFD M+   P P  +S   ++ G   A +     V ++F  + + G+ P+ +  +
Sbjct: 347 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 406

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----------------- 117
           ILIN + + G +    ++   +      PD VTF ++I  +C+                 
Sbjct: 407 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 466

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNE 173
              P    Y  +I G C  G + KAKEL  +M +K++ P  V Y +S+I   C      E
Sbjct: 467 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 526

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M   G+ P+ + Y TL+D
Sbjct: 527 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 586

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C  GR++ A  +F  M   G
Sbjct: 587 GYCKNGRIDDALTVFRDMLHKG 608



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 26/235 (11%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNSTGLF----PDLYTHSILINC 80
           +P P  + N +L  LA+              + LFKR++         P ++T++ILI+C
Sbjct: 106 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 165

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           + ++ R   G  ++GR+L++   PD  +++               +I G  K G VDKA 
Sbjct: 166 YRRVHRPDLGLAIVGRLLKNGLGPDDFSYS---------------LIYGFVKDGEVDKAH 210

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LFL+M ++ V P ++   S+I+  C   + ++A+ +  +M+D G+ P++ T+++I+D L
Sbjct: 211 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 270

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK+  MD+A  +L+ M++ G RP++ TYN+L+ G+ ++G  N +  +F  M S G
Sbjct: 271 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 325



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 25/246 (10%)

Query: 15  TPNEALCIFDYMLRM---HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
            P  A+ +F  M R      SPP + ++NI++ C  +    D  L++  RL   GL PD 
Sbjct: 132 APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDD 191

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
           +++S LI  F K G V     +   ++     P ++   S+IK +CK             
Sbjct: 192 FSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQK 250

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD  TY+ IIDGLCK   +DKA+ +  +M +   +PN +TY S+I G+  +  
Sbjct: 251 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 310

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           WNE+ R+F +M   GV P V   N  +  L K+G+ +EA  + D M+  G +PD  +Y+T
Sbjct: 311 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 370

Query: 231 LLDGFC 236
           +L G+ 
Sbjct: 371 MLHGYA 376



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 454 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 513

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN  CK GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 514 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 573

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y+ ++ G   A     AK
Sbjct: 574 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 633

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 634 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 693

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 694 FKVGRRQEAKELFDAISTYG 713



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 60/298 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + + M+     P  ++ +N ++   + +  ++  + +FK+++S G+ P +   + 
Sbjct: 277 DKAERVLEQMVEAGTRPNSIT-YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
            I+   K GR +    +   ++     PD++++++++                       
Sbjct: 336 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 395

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------ 161
           K   P+   +N +I+   + G +DKA  +F  M++K + P+ VT+ +V            
Sbjct: 396 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDD 455

Query: 162 -----------------------IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIM 197
                                  I+G C   +  +AK L  EMM++ +  P V  F+ I+
Sbjct: 456 ALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSII 515

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G++ E   ++D+M+Q G RP+  T+N+L++G+CL G +  A  L  +M S+G
Sbjct: 516 NNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 573



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 15/225 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  ++I+L  L + +       +F  +  +G    ++T+ +
Sbjct: 595 DDALTVFRDMLHKGVKPTSVL-YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGV 653

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 654 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMFKVGRR 699

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + PN+ TY+ +I        + EA  LFI +   G   +    N I
Sbjct: 700 QEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 759

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +  L    ++ +AS+ L ++ ++ +  +A T + L   F   G +
Sbjct: 760 VRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMI 804


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 124/250 (49%), Gaps = 28/250 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL------NSTGLFPDLYTHSILINCFCKMGRV 87
           P V +F I++  L K +  D  L +F RL      N  G+ PD+   + LI+  CK+G+ 
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373

Query: 88  SHGFVVLGRI-LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
             G  +L  + + +   P+ VT+  LI                     +  +P+ IT NT
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNT 433

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++DGLCK G V +A E F +MK K +K N  TYT++I  FC  N+ N A + F EM+  G
Sbjct: 434 LVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSG 493

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+ V +  ++  LC  G+M++AS ++  +   G   D   YN L+ GFC   ++    
Sbjct: 494 CSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVY 553

Query: 246 ELFVSMESMG 255
           EL   ME  G
Sbjct: 554 ELLTEMEETG 563



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 9/222 (4%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            +S N +L  L + +    +  L   +    + P + T  IL+N  CK  R+     V  
Sbjct: 281 AASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFD 340

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPN 154
           R LR     + V         +PD + +NT+IDGLCK G  +    L  +MK  N+ +PN
Sbjct: 341 R-LRGKGGSNWVGV-------EPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPN 392

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
            VTY  +I GF  A +++ A  LF +M ++GVQPNV+T N ++D LCK+G++  A    +
Sbjct: 393 TVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFN 452

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            M   G++ +A TY  L+  FC    +N A + F  M S GC
Sbjct: 453 EMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGC 494



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 21/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           + L + + M   + + P   ++N ++    K  ++D    LF+++N  G+ P++ T + L
Sbjct: 375 DGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTL 434

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           ++  CK GRV         +       +  T+T+LI                       C
Sbjct: 435 VDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGC 494

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PDA+ Y ++I GLC  G ++ A  +  K+K      +   Y  +I GFC          
Sbjct: 495 SPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYE 554

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM + GV+P+ +T+N ++  L K G    AS +++ MI+ G+RP   TY  ++  +C
Sbjct: 555 LLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYC 614

Query: 237 LTGRVNHAKELFVSM 251
               V+   ++F  M
Sbjct: 615 SKKNVDEGMKIFGEM 629



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 18/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N A+  F+ ML    SP  V  ++++ G C+A   +  +V+    +L   G   D   ++
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVV--VSKLKLAGFSLDRSCYN 537

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +LI+ FCK  ++   + +L  +  +                KPD ITYNT+I  L K G 
Sbjct: 538 VLISGFCKKKKLERVYELLTEMEETGV--------------KPDTITYNTLISYLGKTGD 583

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFN 194
              A ++  KM  + ++P+VVTY ++I  +C   + +E  ++F EM     V PN V +N
Sbjct: 584 FATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYN 643

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +++D LC+N  +D A SL++ M    VRP+  TYN +L G      ++ A EL   M   
Sbjct: 644 ILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEE 703

Query: 255 GC 256
            C
Sbjct: 704 AC 705



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 122/267 (45%), Gaps = 42/267 (15%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFN----IMLGCLAKNKHY---DTV 55
           LKS   GD        AL + D M      P   S F+    I+ G L ++        V
Sbjct: 185 LKSGRAGD--------ALHVLDEM------PQANSGFSVTGEIVFGELVRSGRSFPDGEV 230

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           + L  +L   G+FPD +  + L+   C   +    + VL  ++R     D          
Sbjct: 231 VGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVD---------- 280

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
               A + N ++  L +   + +  EL  +M+ + ++P+VVT+  ++   C A   +EA 
Sbjct: 281 ----AASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEAL 336

Query: 176 RLFIEMMDQ------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTY 228
           ++F  +  +      GV+P+VV FN ++D LCK GK ++  SLL+ M    + RP+  TY
Sbjct: 337 QVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTY 396

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           N L+DGF   G  + A ELF  M   G
Sbjct: 397 NCLIDGFFKAGNFDRAHELFRQMNEEG 423



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 22/194 (11%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S +N+++    K K  + V  L   +  TG+ PD  T++ LI+   K G  +    V+ +
Sbjct: 534 SCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEK 593

Query: 97  ILRSCFTPDVVTFTSLI-----------------KVCK-----PDAITYNTIIDGLCKQG 134
           +++    P VVT+ ++I                 ++C      P+ + YN +ID LC+  
Sbjct: 594 MIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNN 653

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+A  L   MK K V+PN  TY ++++G       ++A  L   M+++  +P+ +T  
Sbjct: 654 DVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITME 713

Query: 195 VIMDELCKNGKMDE 208
           V+ + L   G++++
Sbjct: 714 VLTEWLSAVGEIEK 727



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E + IF  M      PP    +NI++  L +N   D  +SL + +    + P+  T++ 
Sbjct: 620 DEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNA 679

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++        +   F ++ R++               + C+PD IT   + + L   G +
Sbjct: 680 ILKGVRDKKMLHKAFELMDRMVE--------------EACRPDYITMEVLTEWLSAVGEI 725

Query: 137 DKAKELFLKMKDKN 150
           +K K      +D +
Sbjct: 726 EKLKHFVEGYQDSS 739


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 21/211 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
           LFK +   GL  +  T+SILI+ FC+ G + +    L ++ ++     V  + SLI   C
Sbjct: 214 LFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYC 273

Query: 117 K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           K                    P  +TY ++I G C +G   KA +++ +M  K + PN  
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTY 333

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           T+T++I G C AN   EA RLF EM ++ + P+ VT+NV+++  C++G + EA  LLD M
Sbjct: 334 TFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM 393

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +  G  PD +TY  L+ G C  GRV+ AKE 
Sbjct: 394 VGKGFVPDTYTYRPLISGLCSVGRVSEAKEF 424



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 21/228 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I++    +    D  +    ++    +   +Y ++ LIN +CK+G  S        +
Sbjct: 229 TYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM 288

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           +    TP VVT+TSLI                     K   P+  T+  II GLC+   +
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMM 348

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF +MK++ + P+ VTY  +I G C + + +EA  L  EM+ +G  P+  T+  +
Sbjct: 349 AEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +  LC  G++ EA   +D + +   + +   Y+ L+ G+C  GR   A
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDA 456



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 22/238 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + I++   A+      +  L K +++ GL PD   ++ +I+   K G +   F +   ++
Sbjct: 475 YAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMV 534

Query: 99  RSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VVT+T+LI  +CK                    P+ ITY   +D L + G ++
Sbjct: 535 DEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNME 594

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +L   M  K      V+Y  +IRGFC      EA +L   M D  + P+ +T++ I+
Sbjct: 595 KAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTII 653

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            E CK   + EA  L   M+  G++PD   Y+ L+ G C+ G +  A EL   M   G
Sbjct: 654 YEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRG 711



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 23/222 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + + +L  L + + ++ VL LF  + S  + PD+Y +S ++   C++   +     
Sbjct: 94  PEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKA--- 150

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                      +++ +    + CK   + YN +I GLCK   + +A E+   +  K ++ 
Sbjct: 151 ----------KEMIHWMEFNQ-CKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEA 199

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY            +NEA+ LF EM ++G+  N +T+++++D  C+ G+MD A   L
Sbjct: 200 NVVTYYG---------KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFL 250

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M +  +    + YN+L++G+C  G  + AK  F  M   G
Sbjct: 251 DKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKG 292



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 114/237 (48%), Gaps = 22/237 (9%)

Query: 13  TITPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           T   ++   +F  +  MH     P    +  M+   +K  +      L+  +   G  P+
Sbjct: 482 TAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPN 541

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT-------------------- 110
           + T++ LIN  CK G +    ++    L S  TP+ +T+                     
Sbjct: 542 VVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHH 601

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
           +++K      ++YN +I G C+ G +++A +L   M D ++ P+ +TY+++I   C  ++
Sbjct: 602 AMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSN 661

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             EA +L+  M+D+G++P+ + ++ ++   C  G++++A  L D MI+ G+R +  T
Sbjct: 662 LQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F  ++  L +       + LF  +    + P   T++++I   C+ G +S  F +
Sbjct: 330 PNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHL 389

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++   F PD  T              Y  +I GLC  G V +AKE    +   + K 
Sbjct: 390 LDEMVGKGFVPDTYT--------------YRPLISGLCSVGRVSEAKEFVDDLHKDHHKL 435

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N + Y++++ G+C    + +A      M+++GV  ++V + +++D   +         LL
Sbjct: 436 NNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLL 495

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M  HG+RPDA  Y  ++D     G +  A  L+  M   GC
Sbjct: 496 KEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGC 538



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M      P  V+ +N+M+    ++ +      L   +   G  PD YT+  L
Sbjct: 350 EAIRLFGEMKERKIMPSEVT-YNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------ 118
           I+  C +GRVS     +  + +     + + +++L+   CK                   
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGV 468

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D + Y  +IDG  ++        L  +M +  ++P+ V YT++I     A +  EA  
Sbjct: 469 AMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFG 528

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L+  M+D+G  PNVVT+  +++ LCK G MD+A  L    +   V P+  TY   LD   
Sbjct: 529 LWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLT 588

Query: 237 LTGRVNHAKELFVSM 251
             G +  A +L  +M
Sbjct: 589 RGGNMEKAVQLHHAM 603



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 53/102 (51%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           MKD N+ P V T ++++ G      +N+   LF +++   VQP++  ++ ++  LC+   
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++A  ++  M  +  +     YN L+ G C + R+  A E+
Sbjct: 147 FNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEI 188



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M D  + P V T + +++ L +  + ++   L D ++   V+PD + Y+ ++   C    
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 241 VNHAKELFVSMESMGC 256
            N AKE+   ME   C
Sbjct: 147 FNKAKEMIHWMEFNQC 162


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA CIFD M+   P P  +S   ++ G   A +     V ++F  + + G+ P+ +  +
Sbjct: 205 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 264

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----------------- 117
           ILIN + + G +    ++   +      PD VTF ++I  +C+                 
Sbjct: 265 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 324

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNE 173
              P    Y  +I G C  G + KAKEL  +M +K++ P  V Y +S+I   C      E
Sbjct: 325 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 384

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M   G+ P+ + Y TL+D
Sbjct: 385 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 444

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C  GR++ A  +F  M   G
Sbjct: 445 GYCKNGRIDDALTVFRDMLHKG 466



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 117/225 (52%), Gaps = 22/225 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           SPP + ++NI++ C  +    D  L++  RL   GL PD +++S LI  F K G V    
Sbjct: 10  SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 68

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +   ++     P ++   S+IK +CK                    PD  TY+ IIDGL
Sbjct: 69  CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 128

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   +DKA+ +  +M +   +PN +TY S+I G+  +  WNE+ R+F +M   GV P V
Sbjct: 129 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 188

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
              N  +  L K+G+ +EA  + D M+  G +PD  +Y+T+L G+
Sbjct: 189 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 15/187 (8%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P ++T++ILI+C+ ++ R   G  ++GR+L++   PD  +++               +I 
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS---------------LIY 56

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G  K G VDKA  LFL+M ++ V P ++   S+I+  C   + ++A+ +  +M+D G+ P
Sbjct: 57  GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAP 116

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ T+++I+D LCK+  MD+A  +L+ M++ G RP++ TYN+L+ G+ ++G  N +  +F
Sbjct: 117 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 176

Query: 249 VSMESMG 255
             M S G
Sbjct: 177 KQMSSCG 183



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 312 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 371

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN  CK GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 372 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 431

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y+ ++ G   A     AK
Sbjct: 432 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 491

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 492 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 551

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 552 FKVGRRQEAKELFDAISTYG 571



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 60/298 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + + M+     P  ++ +N ++   + +  ++  + +FK+++S G+ P +   + 
Sbjct: 135 DKAERVLEQMVEAGTRPNSIT-YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 193

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
            I+   K GR +    +   ++     PD++++++++                       
Sbjct: 194 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 253

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------ 161
           K   P+   +N +I+   + G +DKA  +F  M++K + P+ VT+ +V            
Sbjct: 254 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDD 313

Query: 162 -----------------------IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIM 197
                                  I+G C   +  +AK L  EMM++ +  P V  F+ I+
Sbjct: 314 ALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSII 373

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G++ E   ++D+M+Q G RP+  T+N+L++G+CL G +  A  L  +M S+G
Sbjct: 374 NNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 431



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 16/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  ++I+L  L + +       +F  +  +G    ++T+ +
Sbjct: 453 DDALTVFRDMLHKGVKPTSVL-YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGV 511

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 512 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMFKVGRR 557

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + PN+ TY+ +I        + EA  LFI +   G   +    N I
Sbjct: 558 QEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 617

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV-NHAKELFVSM 251
           +  L    ++ +AS+ L ++ ++ +  +A T + L   F   G+   H K L  +M
Sbjct: 618 VRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLLPANM 673


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA CIFD M+   P P  +S   ++ G   A +     V ++F  + + G+ P+ +  +
Sbjct: 291 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 350

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----------------- 117
           ILIN + + G +    ++   +      PD VTF ++I  +C+                 
Sbjct: 351 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 410

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNE 173
              P    Y  +I G C  G + KAKEL  +M +K++ P  V Y +S+I   C      E
Sbjct: 411 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 470

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M   G+ P+ + Y TL+D
Sbjct: 471 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 530

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C  GR++ A  +F  M   G
Sbjct: 531 GYCKNGRIDDALTVFRDMLHKG 552



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 22/226 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           SPP + ++NI++ C  +    D  L++  RL   GL PD +++S LI  F K G V    
Sbjct: 96  SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 154

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +   ++     P ++   S+IK +CK                    PD  TY+ IIDGL
Sbjct: 155 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 214

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK   +DKA+ +  +M +   +PN +TY S+I G+  +  WNE+ R+F +M   GV P V
Sbjct: 215 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTV 274

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              N  +  L K+G+ +EA  + D M+  G +PD  +Y+T+L G+ 
Sbjct: 275 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 320



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 15/187 (8%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P ++T++ILI+C+ ++ R   G  ++GR+L++   PD  +++               +I 
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS---------------LIY 142

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G  K G VDKA  LFL+M ++ V P ++   S+I+  C   + ++A+ +  +M+D G+ P
Sbjct: 143 GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAP 202

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ T+++I+D LCK+  MD+A  +L+ M++ G RP++ TYN+L+ G+ ++G  N +  +F
Sbjct: 203 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 262

Query: 249 VSMESMG 255
             M S G
Sbjct: 263 KQMSSCG 269



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 398 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 457

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN  CK GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 458 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 517

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y+ ++ G   A     AK
Sbjct: 518 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 577

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 578 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 637

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 638 FKVGRRQEAKELFDAISTYG 657



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 60/298 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + + M+     P  ++ +N ++   + +  ++  + +FK+++S G+ P +   + 
Sbjct: 221 DKAERVLEQMVEAGTRPNSIT-YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 279

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
            I+   K GR +    +   ++     PD++++++++                       
Sbjct: 280 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 339

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------ 161
           K   P+   +N +I+   + G +DKA  +F  M++K + P+ VT+ +V            
Sbjct: 340 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDD 399

Query: 162 -----------------------IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIM 197
                                  I+G C   +  +AK L  EMM++ +  P V  F+ I+
Sbjct: 400 ALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSII 459

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G++ E   ++D+M+Q G RP+  T+N+L++G+CL G +  A  L  +M S+G
Sbjct: 460 NNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 517



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 15/225 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  ++I+L  L + +       +F  +  +G    ++T+ +
Sbjct: 539 DDALTVFRDMLHKGVKPTSVL-YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGV 597

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 598 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMFKVGRR 643

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + PN+ TY+ +I        + EA  LFI +   G   +    N I
Sbjct: 644 QEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 703

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +  L    ++ +AS+ L ++ ++ +  +A T + L   F   G +
Sbjct: 704 VRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMI 748


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 121/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ML  H   P    + +++    K  +    LS+F+RL++ G+ PD+ T S  
Sbjct: 561 EAAKYFDEMLD-HGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAF 619

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K GRV     V   +      PDV T++SLI               G CKQG V+
Sbjct: 620 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI--------------SGFCKQGEVE 665

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL  +M  K + PN+  Y +++ G C + D   A++LF  M ++G++P+ VT++ ++
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 725

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK+  + EA SL   M   GV+P +F YN L+ G C  G +  A  LF  M   G
Sbjct: 726 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P +  +N ++ CL+K    +   +    +   GL PD  T    I  + K G+++    
Sbjct: 505 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 564

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
               +L     P+   +T LI                         PD  T +  I GL 
Sbjct: 565 YFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLL 624

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G V +A ++F ++K+K + P+V TY+S+I GFC   +  +A  L  EM  +G+ PN+ 
Sbjct: 625 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 684

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N ++D LCK+G +  A  L D M + G+ PD+ TY+T++DG+C +  V  A  LF  M
Sbjct: 685 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 744

Query: 252 ESMG 255
            S G
Sbjct: 745 PSKG 748



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I+   L + K  +     F+ +  TGL PD    S LI+ F + G +    + 
Sbjct: 296 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE-VLR 354

Query: 94  LGRILRSCFTP-DVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +  ++ SC  P +++T+  LI                       CKP++ T+  +I+G C
Sbjct: 355 IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYC 414

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++  + +A EL  +M+ +N+ P+ V+Y ++I G C+  D + A +L  +M   G++PNVV
Sbjct: 415 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 474

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +++++      G+++EA  LLD M   GV PD F YN ++      G++  A    + +
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 534

Query: 252 ESMG 255
           +  G
Sbjct: 535 QGRG 538



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 14/187 (7%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           D+YT++ L+   CK G +     VL  +                K   P+   Y+ +I+G
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDE--------------KGLNPNEFIYSLVIEG 272

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           +C+ G +D+A EL   M +K + PN  TYT +  G C A   NEAK  F EM   G++P+
Sbjct: 273 MCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
               + ++D   + G +DE   + D+M+  G+  +  TYN L+ G C  G++  A E+  
Sbjct: 333 YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK 392

Query: 250 SMESMGC 256
            M ++GC
Sbjct: 393 GMVTLGC 399



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA   F+ M +    P   ++ + ++    +    D VL +   + S G+  +L T+++
Sbjct: 315 NEAKLTFEEMQKTGLKPD-YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK G++     +L  ++     P+  TF  LI+  C+                  
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P A++Y  +I+GLC    +  A +L  KM    +KPNVV Y+ +I  +       EA+
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR 493

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M   GV P++  +N I+  L K GKM+EAS+ L  +   G++PDA T+   + G+
Sbjct: 494 RLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 553

Query: 236 CLTGRVNHAKELFVSMESMG 255
             TG++  A + F  M   G
Sbjct: 554 SKTGKMTEAAKYFDEMLDHG 573



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 140/303 (46%), Gaps = 63/303 (20%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI       A  +FD M      P  V+ ++ M+    K+++     SLF  + S G+ 
Sbjct: 697 GDI-----QRARKLFDGMPEKGLEPDSVT-YSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 750

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK------- 117
           P  + ++ L++  CK G +     +   +L+  F    ++F +LI    K CK       
Sbjct: 751 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQL 809

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD +TY T+ID  CK G +++A  LF +M+++N+  + VTYTS++ G+  
Sbjct: 810 FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK 869

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIM----------------DE------------ 199
               +E   LF +M+ +GV+P+ VT+ +++                DE            
Sbjct: 870 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 929

Query: 200 -------LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
                  LCK   + EAS LLD M + G++P     NTL+  F   G+++ A  +F  ++
Sbjct: 930 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVK 989

Query: 253 SMG 255
           S+G
Sbjct: 990 SLG 992



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 20/224 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P +  +N ++  L K+        LF  +   GL PD  T+S +I+ +CK   V+  F 
Sbjct: 680 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 739

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDA--------------------ITYNTIIDGLCK 132
           +   +      P    + +L+  C  +                     +++NT+IDG CK
Sbjct: 740 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCK 799

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A +LF +M  K + P+ VTYT+VI   C A    EA  LF EM ++ +  + VT
Sbjct: 800 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT 859

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M    K G+  E  +L + M+  GV+PD  TY  ++   C
Sbjct: 860 YTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 903



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++  ++G L K         +   ++  GL P+ + +S++I   C++G +        
Sbjct: 228 VYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAV---- 283

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            + RS     +V          P+  TY  I  GLC+   +++AK  F +M+   +KP+ 
Sbjct: 284 ELKRSMGEKGLV----------PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDY 333

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
              +++I GF    D +E  R+   M+  G+  N++T+NV++  LCK GKM++A+ +L  
Sbjct: 334 NACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKG 393

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           M+  G +P++ T+  L++G+C    +  A EL   ME
Sbjct: 394 MVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEME 430



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI     +E L I D M+     P  + ++N+++  L K    +    + K + + G 
Sbjct: 346 EGDI-----DEVLRIKDVMVSCGI-PINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGC 399

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------- 116
            P+  T  +LI  +C+   +     +L  + +    P  V++ ++I  +C          
Sbjct: 400 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 459

Query: 117 ----------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                     KP+ + Y+ +I     +G +++A+ L   M    V P++  Y ++I    
Sbjct: 460 LLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 519

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A    EA    +E+  +G++P+ VTF   +    K GKM EA+   D M+ HG+ P+  
Sbjct: 520 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 579

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y  L++G    G +  A  +F  + ++G
Sbjct: 580 LYTVLINGHFKAGNLMEALSIFRRLHALG 608



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 18/203 (8%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D+VL  F+  N  G  P ++   ILI+ + +MG +     V           +     SL
Sbjct: 144 DSVLFWFR--NYGGSSPVVF--DILIDSYKRMGMLDEAANVF------FVAKNDSILISL 193

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
           I+         N+++  L K G ++   +++  M D  +  +V TYT ++   C   D  
Sbjct: 194 IRC--------NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLR 245

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
            AKR+ IEM ++G+ PN   ++++++ +C+ G +DEA  L   M + G+ P+ +TY  + 
Sbjct: 246 GAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIIT 305

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G C   R+N AK  F  M+  G
Sbjct: 306 AGLCRAKRMNEAKLTFEEMQKTG 328



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 36/252 (14%)

Query: 8    EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
            EGD+      +A+ +F  ML+         SFN ++    K+        LF+ + +  +
Sbjct: 766  EGDM-----EKAMNLFREMLQ--KGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 818

Query: 68   FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
             PD  T++ +I+  CK G++    ++   +       D VT+TSL+              
Sbjct: 819  MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFA 878

Query: 114  -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV----I 162
                   K  KPD +TY  +I   CK+   D   E F K++D+ V   ++T  ++    I
Sbjct: 879  LFEKMVAKGVKPDEVTYGLVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLI 934

Query: 163  RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
               C   D  EA +L  EM + G++P++   N ++    + GKMDEA+ + + +   G+ 
Sbjct: 935  TALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLV 994

Query: 223  PDAFTYNTLLDG 234
            PD  T   L++G
Sbjct: 995  PDTTTLIDLVNG 1006


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 29/266 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYT 73
            +A  +FD +LR       +   N  L  +A++     V S + R+   G   + P+L T
Sbjct: 36  EDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCT 93

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------- 114
           + ILI   C  GR+  GF  LG +++  F  D + FT L+K                   
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 115 ---VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYAN 169
               C P+  +YN ++ GLC +    +A EL   M D   +  P+VV+YT+VI GF    
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
           D ++A   + EM+D+G+ PNVVT++ I+  LCK   MD+A  +L  M+++GV P+  TYN
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMG 255
           +++ G+C +G+   A      M S G
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDG 299



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 12/215 (5%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ G  A  +  D +  + +R+   G  P++++++IL+   C   R      +L  +   
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM--- 188

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD          C PD ++Y T+I+G  K+G +DKA   + +M D+ + PNVVTY+S
Sbjct: 189 ---PDDG------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C A   ++A  +   M+  GV PN  T+N I+   C +G+  EA   L  M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD  TYN+L+D  C  GR   A+++F SM   G
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 26/252 (10%)

Query: 26  MLRMHPS-----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           +L+M P      PP V S+  ++    K    D     +  +   G+ P++ T+S +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPD 119
            CK   +     VL  ++++   P+  T+ S++   C                    +PD
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            +TYN+++D LCK G   +A+++F  M  + +KP + TY ++++G+       E   L  
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+  G+ PN   F++++    K GK+D+A  +   M Q G+ PD  TY T++   C +G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 240 RVNHAKELFVSM 251
           RV  A   F  M
Sbjct: 424 RVEDAMRYFEQM 435



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHSILINCFCKMGRVSHGF 91
           P V S+NI+L  L         L L + +   G    PD+ +++ +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGL 130
                +L     P+VVT++S+I  +CK  A+                    TYN+I+ G 
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G   +A     KM    V+P+VVTY S++   C      EA+++F  M  +G++P +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+  ++      G + E   LLDLM+++G+ P+ + ++ L+  +   G+V+ A  +F  
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 251 MESMG 255
           M   G
Sbjct: 400 MRQQG 404



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 26/196 (13%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
            G  ++  P EA+    ++ +MH     P V ++N ++  L KN        +F  +   
Sbjct: 277 HGYCSSGQPKEAI---GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------ 113
           GL P++ T+  L+  +   G +     +L  ++R+   P+   F+ LI            
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 114 ---------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                    +   PD +TY T+I  LCK G V+ A   F +M D+ + P  + Y S+I  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 165 FCYANDWNEAKRLFIE 180
            C  + W++AK  F++
Sbjct: 454 LCIFDKWDKAKDYFLK 469


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 131/234 (55%), Gaps = 15/234 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           ALC+FD M +     P + S N +L  L +N      L +++++ + G+ PD+++++I++
Sbjct: 205 ALCVFDNMGKC-GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV 263

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N +CK GRV   F  +  + RSC              C+P+ +TYN++IDG    G V  
Sbjct: 264 NAYCKEGRVDEAFNFVKEMERSC--------------CEPNVVTYNSLIDGYVSLGDVCG 309

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           AK++   M +K +  N  TYT +I+G+C      +A++L   MM++ +  +   + V++ 
Sbjct: 310 AKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIH 369

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             C  G++D+A  + D M++ G++ +    N+L++G+C  G VN A E+ VSM+
Sbjct: 370 AYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMK 423



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P    ++ +++    K    +    L   +    LF D + + +LI+ +C  GRV     
Sbjct: 323 PENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALR 382

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +L+     + V       +C       N++I+G CK G V+KA E+ + MKD N+K
Sbjct: 383 IRDAMLKVGLKMNTV-------IC-------NSLINGYCKLGHVNKAAEVLVSMKDWNLK 428

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+   Y +++ GFC   D+ +A +L  EM ++GV   VVT+N ++  L   G ++ A  +
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +LM + GV P+  TY TLLD F   G  + A  ++    S G
Sbjct: 489 WNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKG 531



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++         D   + + ++   G+ P++   S +++   + G++    ++
Sbjct: 639 PNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLI 698

Query: 94  LGRI-------------------LRSCFTPDVVTFTSLIKVCKP--DAITYNTIIDGLCK 132
           L +I                   LR   T  +V       +  P  + I YN  I GLCK
Sbjct: 699 LHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCK 758

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D  + +   +  K   P+  TY S+I         NEA  L  +M++ G+ PN+V 
Sbjct: 759 SKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVV 818

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++ LCK+G +D A  L + + + G+ P   TYNTL+DG+C  GR   A EL   M 
Sbjct: 819 YNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMR 878

Query: 253 SMG 255
             G
Sbjct: 879 EEG 881



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 14/183 (7%)

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
            ++I I   CK   +     +L  +L   F PD  T+ SLI  C                
Sbjct: 748 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSA-------------- 793

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V++A  L   M +  + PN+V Y ++I G C + + + A+RLF ++  +G+ P VVT
Sbjct: 794 VGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVT 853

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK G+  EA  L D M + G+ P + TY+TL+ G  + G+   +  L   M 
Sbjct: 854 YNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMM 913

Query: 253 SMG 255
             G
Sbjct: 914 KAG 916



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 104/217 (47%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F+++L   A+       L +F  +   G  P L + + L++   + G      +V  +++
Sbjct: 189 FDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMI 248

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                PD+ ++T               +++  CK+G VD+A     +M+    +PNVVTY
Sbjct: 249 ALGILPDIFSYT--------------IMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTY 294

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            S+I G+    D   AK++   M ++G+  N  T+ +++   CK G+M++A  L+  M++
Sbjct: 295 NSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMME 354

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +  D   Y  L+  +C  GRV+ A  +  +M  +G
Sbjct: 355 KNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVG 391



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 22/216 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I++ M +   +P  V+ +  +L    K   +D  + ++K   S G    +  ++ +I
Sbjct: 485 ALHIWNLMHKRGVAPNEVT-YCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMI 543

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------PDAIT 122
             FCKM ++     +  ++    F PD +T+ +LI   CK                D I+
Sbjct: 544 CGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGIS 603

Query: 123 -----YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                YN++I G+ +   + K   L  +MK++ + PNVVTY S+I G+C     ++A   
Sbjct: 604 SSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNA 663

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + +M+D+G+ PN++  + I+  L ++GK+DEA+ +L
Sbjct: 664 YFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLIL 699



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L  L    H +  L ++  ++  G+ P+  T+  L++ F K+G      ++  
Sbjct: 466 VVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWK 525

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
             L   FT  +                YNT+I G CK   + +A+E+FLKMK+    P+ 
Sbjct: 526 DALSKGFTKSITL--------------YNTMICGFCKMEKLVQAQEIFLKMKELGFPPDE 571

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +TY ++I G+C   +  EA +L       G+  +   +N ++  + ++ ++ + + LL  
Sbjct: 572 ITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAE 631

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M    + P+  TY +L+ G+C  G ++ A   +  M   G
Sbjct: 632 MKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKG 671



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 24/181 (13%)

Query: 35  PVSS---FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P+S+   +NI +  L K+K+ D V  +   L   G  PD YT+  LI+    +G+V+  F
Sbjct: 742 PISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAF 801

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +   ++ +   P++V + +LI  +CK                    P  +TYNT+IDG 
Sbjct: 802 CLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGY 861

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G   +A EL  KM+++ + P+ +TY+++I G        ++  L  EMM  G   +V
Sbjct: 862 CKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSSV 921

Query: 191 V 191
           +
Sbjct: 922 M 922



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 22/258 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I D ML++      V   N ++    K  H +    +   +    L PD Y ++ 
Sbjct: 378 DDALRIRDAMLKVGLKMNTVIC-NSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNT 436

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           L++ FCK       F +   +        VVT+ +L+K                      
Sbjct: 437 LLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRG 496

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TY T++D   K G  D+A  ++     K    ++  Y ++I GFC      +A+
Sbjct: 497 VAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQ 556

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F++M + G  P+ +T+  ++D  CK G + EA  L D+  + G+      YN+L+ G 
Sbjct: 557 EIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGV 616

Query: 236 CLTGRVNHAKELFVSMES 253
             +  +     L   M++
Sbjct: 617 FRSEELQKLNGLLAEMKN 634



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA C+ D M+     P  V  +N ++  L K+ + D    LF +L   GL P + T++ 
Sbjct: 798 NEAFCLRDDMINAGLVPNIVV-YNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNT 856

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ +CK GR +    +  ++                 +C P +ITY+T+I GL  +G  
Sbjct: 857 LIDGYCKGGRTTEALELKDKMREE-------------GIC-PSSITYSTLIHGLYMEGKS 902

Query: 137 DKAKELFLKM 146
           +++  L  +M
Sbjct: 903 EQSVGLLNEM 912



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 102 FTPDVVTFTSLIKVCK-----PDAITYNTIIDGLCKQGFVDKA--KELFLKMKDKNVKPN 154
           F PDV ++  ++ +        +   Y   +  LCK  ++  A   EL    ++ +  P 
Sbjct: 128 FRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSPT 187

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           V  +  +++ F        A  +F  M   G  P++ + N ++  L +NG+  +A  + +
Sbjct: 188 V--FDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYE 245

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            MI  G+ PD F+Y  +++ +C  GRV+ A      ME   C
Sbjct: 246 QMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCC 287


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 27/257 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL + + M  M    P V +FN ++  L +         L  R+   G  P+  T+ +
Sbjct: 260 NEALKLLEEMFLMG-CLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+N  C++G+V    V+L ++     TP+ V FT LI                       
Sbjct: 319 LMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKN 374

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+PD  T+NT+I GLCK+G +  A ++   M      PN++TYT+++ GFC  N   EA
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEA 434

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +  EM  +G + N++ +NV++  LCKNGK+ +A  +L  M   G +PD FT+NTL+ G
Sbjct: 435 GYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG 494

Query: 235 FCLTGRVNHAKELFVSM 251
            C   R   A  L+  M
Sbjct: 495 LCKVDRKEDALALYRDM 511



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 21/235 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +  +N++L  L KN      L +   ++  G  PD++T + LI   CK+ R      +  
Sbjct: 450 IMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYR 509

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +L      + VT+ +LI                       C  D ITYN +I   CK G
Sbjct: 510 DMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLG 569

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             +KA  LF +M  K++ P+ ++   +I G C       A  L  +M+ +G+ P+VVT+N
Sbjct: 570 ATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYN 629

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            +++ LCK G + EA +L + +   G++PDA TYNTL+   C  G  + A  L +
Sbjct: 630 SLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLL 684



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 46/273 (16%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A  +   M  ++   P   S+N++L  L          ++F  + S G+ P +YT  
Sbjct: 153 PGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFG 212

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++   C +  V +   +L  + +                C P+++ Y T+I  L K+  
Sbjct: 213 VVMKALCMVNEVDNACSLLRDMTKHG--------------CVPNSVVYQTLIHALSKRDR 258

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V++A +L  +M      P+V T+  VI G C  N  +E  +L   M+ +G  PN +T+ V
Sbjct: 259 VNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 196 IMDELCKNGKMDEASSLL--------------------------------DLMIQHGVRP 223
           +M+ LC+ GK+DEA  LL                                D MI++G RP
Sbjct: 319 LMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRP 378

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D FT+NTL+ G C  G +  A ++   M + GC
Sbjct: 379 DVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGC 411



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  +L    K    +    +   +++ G   ++  +++L+   CK G+V     +
Sbjct: 413 PNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDM 472

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKPD--------------------AITYNTIIDGLCK 132
           LG +      PD+ TF +LI  +CK D                     +TYNT+I    +
Sbjct: 473 LGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLR 532

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A +L   M  +    + +TY  +I+ FC      +A  LF EM+ + + P+ ++
Sbjct: 533 GGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNIS 592

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N++++ LC+ GK+  A  LL  MI  G+ PD  TYN+L++G C  G +  A  LF  ++
Sbjct: 593 CNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQ 652

Query: 253 SMG 255
           + G
Sbjct: 653 AEG 655



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++  L K    +  L+L++ +   G+  +  T++ LI+ F + G +     +
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKL 542

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           +  +L      D +T+  LIK  CK                    P  I+ N +I+GLC+
Sbjct: 543 VNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCR 602

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V  A EL   M  + + P+VVTY S+I G C   +  EA  LF ++  +G+QP+ +T
Sbjct: 603 VGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAIT 662

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++   C+ G  D+A  LL   +++   P+  T+  L+  F
Sbjct: 663 YNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNF 705



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 15/186 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL + + ML     P    ++N ++    K    +  L LF  +    L P   + ++
Sbjct: 537 QEALKLVNDML-FRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNL 595

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C++G+V +   +L  ++     PDVVT              YN++I+GLCK G +
Sbjct: 596 LINGLCRVGKVCNALELLRDMIHRGLAPDVVT--------------YNSLINGLCKMGNI 641

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K++ + ++P+ +TY ++I   C A  +++A  L +  ++    PN VT+ ++
Sbjct: 642 REAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYIL 701

Query: 197 MDELCK 202
           +    K
Sbjct: 702 VSNFIK 707


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 125/279 (44%), Gaps = 62/279 (22%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++    K    D    L   +   G+  D+  HS LI   C+ GR+         + 
Sbjct: 114 YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 173

Query: 99  RSCFTPDVVTFTSLIK--------------------------VCKPDAITYNTIIDGLCK 132
             C +P+V+T+ +++                            C+PD I+Y+T+ID LCK
Sbjct: 174 EEC-SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCK 232

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC-------------------------- 166
              VDKA E F +M+     PNVVTY+S+I G C                          
Sbjct: 233 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIID 292

Query: 167 --------YANDWNE-AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                   + ND  E A + F  ++  G +PNVVT+NV +  LCK G++DEA  +L  M+
Sbjct: 293 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMV 352

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  V PD  TY++++DGFC  GR++ A ++F  M    C
Sbjct: 353 ESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHEC 391



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 25/261 (9%)

Query: 17  NEALCIFDYMLRM----HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +EAL +FD M +     H   P V S++ ++  L K +  D     FKR+ + G  P++ 
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 256

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------KVC------ 116
           T+S LI+  CK+ R S    +L  +    F  +++ F +++          K C      
Sbjct: 257 TYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 316

Query: 117 -----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                KP+ +TYN  + GLCK G VD+A  + L+M +  V P+V+TY+S+I GFC A   
Sbjct: 317 LKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRM 376

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           ++A  +F  MM     P+ VTF  ++    ++ K  EA  + + M+  G  P   TYN L
Sbjct: 377 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 436

Query: 232 LDGFCLTGRVNHAKELFVSME 252
           +D  C    V  A E++  M+
Sbjct: 437 MDCVCGADSVESALEIYHKMK 457



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 14/215 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ML  L KN   +     F+RL  +G  P++ T+++ ++  CK GRV   + +L  ++
Sbjct: 293 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMV 352

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            S  TPDV              ITY++IIDG CK G +DKA ++F +M      P+ VT+
Sbjct: 353 ESKVTPDV--------------ITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTF 398

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++ GF       EA R+  +M++ G  P + T+NV+MD +C    ++ A  +   M +
Sbjct: 399 MTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKR 458

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              +PD  TY  L+   C   RV+ AKE    ME+
Sbjct: 459 KKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEA 493



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 20/199 (10%)

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
           N  G   + YT ++L+N F K  R         R+L+    P          +C P+ I 
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAH----RLLKEELEP----------LCFPNEIM 113

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y T+I+G CK G VD+A EL  +MK++ VK +V+ ++++I+G C     +EA   F  M 
Sbjct: 114 YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 173

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-----IQHGVRPDAFTYNTLLDGFCL 237
           ++   PNV+T+N +++ LCK  ++DEA  L D M       HG  PD  +Y+T++D  C 
Sbjct: 174 EE-CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCK 232

Query: 238 TGRVNHAKELFVSMESMGC 256
             RV+ A E F  M ++GC
Sbjct: 233 AQRVDKAYEYFKRMRAVGC 251



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 118/255 (46%), Gaps = 21/255 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E  C F   L      P V ++N+ +  L K    D    +   +  + + PD+ T+S 
Sbjct: 306 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------ 117
           +I+ FCK GR+     V  R++     P  VTF +L+             +V +      
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P   TYN ++D +C    V+ A E++ KMK K  +P+  TY  +I+  C A   +EAK
Sbjct: 426 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAK 485

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                M    V PN    + +++ LCK G++DEA S+LD +++ G +P   T+  L++  
Sbjct: 486 EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545

Query: 236 CLTGRVNHAKELFVS 250
            L  +   A +L  S
Sbjct: 546 YLRKKWEAASKLLRS 560



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+++ C+      ++ L ++ ++      PD  T++ LI C C+  RV      
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEF 487

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L          DV+   +++    P+    + +++ LCKQG VD+A  +   + +   +P
Sbjct: 488 L----------DVMEADNVV----PNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQP 533

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              T+  ++        W  A +L   +   G   +  T+++ + E+CK GK DEA  ++
Sbjct: 534 LGETFKILVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVI 590

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  GVRPD  TY  +L   C   RV  A   F  M S GC
Sbjct: 591 EQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGC 633



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 19/231 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I+  M R     P  +++  ++ CL + +  D        + +  + P+      L+
Sbjct: 449 ALEIYHKMKR-KKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 507

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------VCKP----DA 120
              CK G V     VL  ++     P   TF  L++              +  P    DA
Sbjct: 508 EVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADA 567

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TY+  +  +CK G  D+A E+  +M  K V+P+  TY +V+R  C  +    A   F +
Sbjct: 568 ATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEK 627

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           M  +G  P +VT+ +++ E C     DEA  + + M+  G  P A T  TL
Sbjct: 628 MASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 18/191 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D ++ +   P    +F I++  L   K ++    L   L S G   D  T+S+
Sbjct: 517 DEACSVLDNVVEVGCQPLG-ETFKILVEELYLRKKWEAASKL---LRSPGFVADAATYSL 572

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            +   CK G+      V+ +++              +K  +PD  TY  ++  LC    V
Sbjct: 573 CVAEICKAGKPDEAVEVIEQMV--------------LKGVRPDEGTYVAVLRSLCGLDRV 618

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A   F KM  +   P +VTYT +I   C A+  +EA R+F  M+  G  P   T   +
Sbjct: 619 ESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678

Query: 197 MDELCKNGKMD 207
              L   G  D
Sbjct: 679 SSCLRDAGYQD 689


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           NEA CIFD M+   P P  +S   ++ G   A +     V ++F  + + G+ P+ +  +
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 426

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----------------- 117
           ILIN + + G +    ++   +      PD VTF ++I  +C+                 
Sbjct: 427 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 486

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-TSVIRGFCYANDWNE 173
              P    Y  +I G C  G + KAKEL  +M +K++ P  V Y +S+I   C      E
Sbjct: 487 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 546

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M   G+ P+ + Y TL+D
Sbjct: 547 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD 606

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C  GR++ A  +F  M   G
Sbjct: 607 GYCKNGRIDDALTVFRDMLHKG 628



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 26/235 (11%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNSTGLF----PDLYTHSILINC 80
           +P P  + N +L  LA+              + LFKR++         P ++T++ILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           + ++ R   G  ++GR+L++   PD  +++               +I G  K G VDKA 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSYS---------------LIYGFVKDGEVDKAH 230

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LFL+M ++ V P ++   S+I+  C   + ++A+ +  +M+D G+ P++ T+++I+D L
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK+  MD+A  +L+ M++ G RP++ TYN+L+ G+ ++G  N +  +F  M S G
Sbjct: 291 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 345



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 25/246 (10%)

Query: 15  TPNEALCIFDYMLRM---HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
            P  A+ +F  M R      SPP + ++NI++ C  +    D  L++  RL   GL PD 
Sbjct: 152 APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDD 211

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
           +++S LI  F K G V     +   ++     P ++   S+IK +CK             
Sbjct: 212 FSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQK 270

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD  TY+ IIDGLCK   +DKA+ +  +M +   +PN +TY S+I G+  +  
Sbjct: 271 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 330

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           WNE+ R+F +M   GV P V   N  +  L K+G+ +EA  + D M+  G +PD  +Y+T
Sbjct: 331 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 231 LLDGFC 236
           +L G+ 
Sbjct: 391 MLHGYA 396



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 474 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 533

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN  CK GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 534 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 593

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y+ ++ G   A     AK
Sbjct: 594 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 653

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 654 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 713

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 714 FKVGRRQEAKELFDAISTYG 733



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 60/298 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + + M+     P  ++ +N ++   + +  ++  + +FK+++S G+ P +   + 
Sbjct: 297 DKAERVLEQMVEAGTRPNSIT-YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 355

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
            I+   K GR +    +   ++     PD++++++++                       
Sbjct: 356 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT 415

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV------------ 161
           K   P+   +N +I+   + G +DKA  +F  M++K + P+ VT+ +V            
Sbjct: 416 KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDD 475

Query: 162 -----------------------IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIM 197
                                  I+G C   +  +AK L  EMM++ +  P V  F+ I+
Sbjct: 476 ALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSII 535

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LCK G++ E   ++D+M+Q G RP+  T+N+L++G+CL G +  A  L  +M S+G
Sbjct: 536 NNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 593



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  ++I+L  L + +       +F  +  +G    ++T+ +
Sbjct: 615 DDALTVFRDMLHKGVKPTSVL-YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGV 673

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 674 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMFKVGRR 719

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + PN+ TY+ +I        + EA  LFI +   G   +    N I
Sbjct: 720 QEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 779

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  L    ++ +AS+ L ++ ++ +  +A T + L   F   G+
Sbjct: 780 VRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 823


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 22/251 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++ +M+     P  VS ++I++  LAK    D  L +   +   G  P +  +S L+   
Sbjct: 67  VYQHMVESGYKPDNVS-YHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRAL 125

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV--------------CKPDA 120
            K  RV H   +   ++R    PD + F  LI       KV              C+P+ 
Sbjct: 126 AKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNV 185

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             YN ++ GLC  G +++A  LF +MK  +  P+VVTY +++   C A    E  +LF  
Sbjct: 186 PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA 245

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G  PNV+TF+ ++  LC+ G++++A  +   M++ G +P+ +TY TL+ G C   +
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEK 305

Query: 241 VNHAKELFVSM 251
           V  A+ELF  M
Sbjct: 306 VIQARELFEKM 316



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 22/267 (8%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           +    P E+  + + M+    +P  V +FN ++   A++ + +    +++ +  +G  PD
Sbjct: 21  VKEAKPEESYKVLEEMMAAGCNPD-VFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 79

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------- 117
             ++ ILI+   K+G++     +L  ++    TP +  ++SL++                
Sbjct: 80  NVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFD 139

Query: 118 --------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                   PD + +  +I GLC+ G V  A E F +M     +PNV  Y  ++ G C + 
Sbjct: 140 EMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSG 199

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
              +A  LF EM      P+VVT+N ++D +CK  +++E   L + M   G  P+  T++
Sbjct: 200 QLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFS 259

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           TL+ G C TG +  A E+F SM   GC
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGC 286



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E+L I   M+ M    P + +++ ++  LAK +  D   SLF  +   G  PD      
Sbjct: 97  DESLKILSEMV-MRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYE 155

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI   C+ G+V        ++ +    P+V  +  L+                       
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS 215

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYNT++D +CK   V++  +LF  M+     PNV+T++++I G C   +  +A 
Sbjct: 216 CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKAL 275

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M++ G +PN  T+  ++  LC+  K+ +A  L + M Q  + PDA  YN+L+ G+
Sbjct: 276 EVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 335

Query: 236 CLTGRVNHAKELFVSM 251
           C  G ++ A++L+  M
Sbjct: 336 CKRGSMDEAEKLYREM 351



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 22/252 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++ H   P V ++N +L  + K +  +    LF+ + + G  P++ T S LI+  C+ G 
Sbjct: 211 MKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE 270

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
           +     V G +L +   P+  T+T+LI  +C+                    PDA+ YN+
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330

Query: 126 IIDGLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +I G CK+G +D+A++L+ +M     ++P +VT+ ++I GFC       A  L  EM  +
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+  +  T+ +++  L +  K+DEA  +   M +     D  +  + + G C TG ++ A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 245 KELFVSMESMGC 256
             +F +    G 
Sbjct: 451 YAVFEATRKSGA 462



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +++ ++  L K    +    + + + + G  PD++  + ++  F +   +     V  
Sbjct: 10  VFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQ 69

Query: 96  RILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCKQG 134
            ++ S + PD V++  LI    K+ K                 P    Y++++  L K  
Sbjct: 70  HMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKAR 129

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD A  LF +M      P+ + +  +I G C A    +A   F +M   G QPNV  +N
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           V++  LC +G++++A++L   M  H   PD  TYNTLLD  C   RV    +LF +M + 
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 255 G 255
           G
Sbjct: 250 G 250



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------- 114
           +++T+S +I    K  +    + VL  ++ +   PDV  F  +++               
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 115 ------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                   KPD ++Y+ +I GL K G +D++ ++  +M  +   P++  Y+S++R    A
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              + A  LF EM+  G  P+ + F  ++  LC+ GK+ +AS     M +HG +P+   Y
Sbjct: 129 RRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVY 188

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
           N LL G C +G++  A  LF  M+S  C
Sbjct: 189 NVLLHGLCSSGQLEQANTLFAEMKSHSC 216



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 22/253 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E  C     +R     P V +F+ ++  L +    +  L +F  +   G  P+ YT++ L
Sbjct: 237 EEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 296

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  C+  +V     +  ++ ++C  PD V + SLI   CK                   
Sbjct: 297 ISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG 356

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P  +T+NT+IDG CK G + +A EL  +M  K +  +  TY  +I G   A   +EA 
Sbjct: 357 LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEAL 416

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++ +M ++    + V+    +  LCK G +D+A ++ +   + G  P+  T+  L +  
Sbjct: 417 EVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESL 476

Query: 236 CLTGRVNHAKELF 248
              GRV  A++L 
Sbjct: 477 IKLGRVEDAQKLM 489



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP   ++N ++    K    D    L++ ++   GL P + T + LI+ FCK+G+     
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK----- 376

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
             LGR        + +      K    D+ TY  +I GL +   +D+A E++ +M++K  
Sbjct: 377 --LGR-------ANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKF 427

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
             + V+  S + G C   + ++A  +F      G  PN  TF ++ + L K G++++A  
Sbjct: 428 LLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQK 487

Query: 212 LLD 214
           L++
Sbjct: 488 LME 490



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+DKN+  NV TY+S+I+         E+ ++  EMM  G  P+V  FN +M    ++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           M++A  +   M++ G +PD  +Y+ L+ G    G+++ + ++   M
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 106


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  + K   +     L   +   G+ P++ ++S +I+C   MG V     V
Sbjct: 242 PVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAV 301

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            GR+      P+V TFTSLIK                        P+ + YNT+I GLC 
Sbjct: 302 FGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCS 361

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  ++ +M+  +++PNV TY+++I GF  + D   A   + +M++ G +PNVV 
Sbjct: 362 DGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVV 421

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LC+    D+A  L+D MI  G  P   T+N  + G C  GRV  A  +   ME
Sbjct: 422 YTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQME 481

Query: 253 SMGC 256
              C
Sbjct: 482 KYEC 485



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 19/224 (8%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y +R     P V  +N++L  L     +  + +L+  + S GL P+++T+++L+   C+ 
Sbjct: 133 YRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQN 192

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G+V     +L  +                K C PD ++Y T+I  +CK G VDKA+EL +
Sbjct: 193 GKVDGACKLLVEMSN--------------KGCDPDDVSYTTVISSMCKLGDVDKARELAM 238

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           K +     P V  Y ++I G C    + EA  L  EM+D+GV PNV++++ ++  L   G
Sbjct: 239 KFE-----PVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMG 293

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            ++ + ++   M   G RP+  T+ +L+ GF + GRV  A  L+
Sbjct: 294 NVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLW 337



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 23/254 (9%)

Query: 23  FDYMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           FD M  M      P V S++ ++ CL+   + +  L++F R+   G  P++ T + LI  
Sbjct: 264 FDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKG 323

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPD 119
           F   GRV     +   ++R   +P+VV + +LI  +C                    +P+
Sbjct: 324 FFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPN 383

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             TY+TII G  K G +  A E + KM +   +PNVV YT ++   C  + +++A  L  
Sbjct: 384 VTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLID 443

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M+  G  P V+TFN  +  LC+ G+++ A ++LD M ++   P+  TYN LLDG     
Sbjct: 444 NMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRAN 503

Query: 240 RVNHAKELFVSMES 253
               A  L   +E 
Sbjct: 504 AFREACGLIRELEE 517



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 22/248 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +++ M+R   SP  V ++N ++  L  + + D  +S++ ++    + P++ T+S +
Sbjct: 332 DAVGLWNLMIREGVSPN-VVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTI 390

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I  F K G +        +++     P+VV +T ++ V                     C
Sbjct: 391 IYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGC 450

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  IT+N  I GLC+ G V+ A  +  +M+     PN+ TY  ++ G   AN + EA  
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACG 510

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  E+ ++ V+ + VT+N IM     NG   +   LL  M+ +G++ D  T NT ++ +C
Sbjct: 511 LIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYC 570

Query: 237 LTGRVNHA 244
             G+V  A
Sbjct: 571 KLGKVKTA 578



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 108/230 (46%), Gaps = 19/230 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++   P     F  ++ C  ++   +  L +F R+   G  P +  ++++++       
Sbjct: 100 MKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDAL----- 154

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +S     +   L +    + +         +P+  TYN ++  LC+ G VD A +L ++M
Sbjct: 155 LSQNLFKMINALYNNMKSEGL---------EPNVFTYNVLLKALCQNGKVDGACKLLVEM 205

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +K   P+ V+YT+VI   C   D ++A+ L ++      +P V  +N ++  +CK  + 
Sbjct: 206 SNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKF-----EPVVPVYNALIHGVCKECRF 260

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            EA  L++ M+  GV P+  +Y+T++      G V  +  +F  M   GC
Sbjct: 261 KEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGC 310



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 116/242 (47%), Gaps = 23/242 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +++ M +     P V++++ ++   AK+    +    + ++ + G  P++  ++ 
Sbjct: 366 DEAISVWNQMEK-DSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTC 424

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           +++  C+M      F ++  ++     P V+TF + IK                      
Sbjct: 425 MVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYE 484

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+  TYN ++DGL +     +A  L  +++++ V+ + VTY +++ GF +     +  
Sbjct: 485 CLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVL 544

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD-LMIQHGVRPDAFTYNTLLDG 234
           +L  +M+  G++ + +T N  ++  CK GK+  A  +LD +  +   R D  T+  +L G
Sbjct: 545 QLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWG 604

Query: 235 FC 236
            C
Sbjct: 605 IC 606



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 30/240 (12%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKH--------YDTVLSL--FKRLNSTGLFPDLYTH 74
           ++L  +P+P   +S N+   C     H        +D V SL  FK L+++G F   +TH
Sbjct: 20  FVLATNPNPEKANSLNV---CPVSESHVVKVLRQEHDIVSSLEYFKSLSNSGTFK--HTH 74

Query: 75  SILINCFCKMGRVSH--GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
                   K+GR +   G   L + ++    P           C  +   +  +I    +
Sbjct: 75  LTYETMIDKLGRNNEMDGVSYLLQQMKLENVP-----------CSQELFQF--VIKCYRR 121

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               ++  ++F ++++   +P+V  Y  V+      N +     L+  M  +G++PNV T
Sbjct: 122 SNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFT 181

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++  LC+NGK+D A  LL  M   G  PD  +Y T++   C  G V+ A+EL +  E
Sbjct: 182 YNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFE 241



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   +TY T+ID L +   +D    L  +MK +NV  +   +  VI+ +  +N   +  +
Sbjct: 71  KHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLK 130

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  + + G +P+V  +N+++D L         ++L + M   G+ P+ FTYN LL   C
Sbjct: 131 MFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALC 190

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G+V+ A +L V M + GC
Sbjct: 191 QNGKVDGACKLLVEMSNKGC 210



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 16/180 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M + +   P + ++N +L  L +   +     L + L    +  D  T++ ++
Sbjct: 473 AMNVLDQMEK-YECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIM 531

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             F   G       +LG++L              +   K D IT NT ++  CK G V  
Sbjct: 532 YGFSFNGMHQQVLQLLGKML--------------VNGIKLDTITVNTTVNAYCKLGKVKT 577

Query: 139 AKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           A ++   +  +K  + +++T+T ++ G C      EA     EM+ +G+ PN+ T+NV++
Sbjct: 578 AIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLV 637



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++   + N  +  VL L  ++   G+  D  T +  +N +CK+G+V     VL  I
Sbjct: 526 TYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNI 585

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                        S  K  + D IT+  I+ G+C     ++A     +M  + + PN+ T
Sbjct: 586 -------------SAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIAT 632

Query: 158 YTSVIRGF 165
           +  ++RGF
Sbjct: 633 WNVLVRGF 640


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 135/256 (52%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  +L+   SP  +    ++ G   K +   T L +FK + S G+FPD+  +++
Sbjct: 537 DEALALFFQLLKKGFSPDHIIYCTLIDG-FCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------KVCK--- 117
           LIN F + G V +   +L  I++    PD+VT+ ++I                +V K   
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+AIT+  +ID  CK G +D A  +F  M ++  +PN++TY+ +I G+    +   A 
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ +M+   V PN+V++++++D LCK G M+EAS      I   + PD   Y  L+ G+
Sbjct: 716 ELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 236 CLTGRVNHAKELFVSM 251
           C  GR+  A  L+  M
Sbjct: 776 CKVGRLAEAMMLYDHM 791



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 22/250 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M+R  PSP  V+ F+ ++    K    D   SL+  +   G+ PDL  +SILIN   
Sbjct: 263 FDMMVRSGPSPNLVT-FSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAI 121
           + G++  G  +    L      DVV F+S++                         P+ +
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY+ +I+GLC+ G V +A  +F ++  + ++P+V+TY+S+I GFC + +  +   L+  M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G  P+VV  +++++ L + G MDEA       ++ G+  + + +N L+DG     R 
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT 501

Query: 242 NHAKELFVSM 251
               ++++ M
Sbjct: 502 RDGLKMYILM 511



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 57/287 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ ++  ML+   SP  V +++I++  L +N        +F ++   GL P + T+S L
Sbjct: 363 KAIEVYTRMLKEGISPN-VVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVT----------------------------- 108
           I+ FCK   +  GF + G +LR    PDVV                              
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 109 ------FTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAKE 141
                 F +LI  C                      PD +TY  ++ GL +QG +D+A  
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF ++  K   P+ + Y ++I GFC   D     ++F  M   G+ P++  +NV+++   
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + G ++    LL  +I++G+ PD  TYNT++ G+C     + A +LF
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF 648



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 14/203 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +   N +L  L            F  +  +G  P+L T S LIN +CK  R+   F +
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++     PD+V               Y+ +I+GL + G +++   LF     + VK 
Sbjct: 298 YNLMIEKGIVPDLVI--------------YSILINGLFRAGKLEEGNSLFSMALARGVKM 343

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VV ++S++  +    D  +A  ++  M+ +G+ PNVVT++++++ LC+NG++ EA  + 
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
             +++ G+ P   TY++L+DGFC
Sbjct: 404 GQILKQGLEPSVLTYSSLIDGFC 426



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 51/249 (20%)

Query: 39  FNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN ++ GC    +  D  L ++  +    + PD+ T+++L+    + GR+     +  ++
Sbjct: 488 FNALIDGCFRLKRTRDG-LKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQL 546

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK------------------------- 132
           L+  F+PD               I Y T+IDG CK                         
Sbjct: 547 LKKGFSPD--------------HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICI 592

Query: 133 ----------QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
                     +G V+   EL  ++    ++P++VTY ++I G+C    +++A +LF  + 
Sbjct: 593 YNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLK 652

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
               QPN +TF +++D  CK+G+MD+A  +   M++ G  P+  TY+ L+DG+  T    
Sbjct: 653 CGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTE 712

Query: 243 HAKELFVSM 251
            A EL+  M
Sbjct: 713 SAFELYEKM 721



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 27/260 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+  F +M +M  S    ++ + ML  L  +   D +L      N   +   L  +  
Sbjct: 157 DRAVDTFAWMSKMGVSISHYAA-SEMLDLLIDSDRIDVILE-----NYEEMCKGLGVYEF 210

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           + N F K G V  G      ++     P +V    ++K +C                   
Sbjct: 211 VFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +T++T+I+  CK+  +D+A  L+  M +K + P++V Y+ +I G   A    E  
Sbjct: 271 PSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGN 330

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF   + +GV+ +VV F+ IMD   + G + +A  +   M++ G+ P+  TY+ L++G 
Sbjct: 331 SLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGL 390

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GRV  A  +F  +   G
Sbjct: 391 CRNGRVLEACGVFGQILKQG 410



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 38/269 (14%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT- 73
            P  AL  F++         PV SF  +   L +++ +D    +F R+   G F +L   
Sbjct: 68  NPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRM--VGQFGNLEVL 125

Query: 74  -----------------HSILINCFCKMGRVSHG---FVVLGRILRSCFTPDVVTFTSLI 113
                            +S L++C+C+ G V      F  + ++  S           L+
Sbjct: 126 GEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLL 185

Query: 114 --------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                         ++CK   + Y  + +   K+G V+K       + ++ + P +V   
Sbjct: 186 IDSDRIDVILENYEEMCKGLGV-YEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCN 244

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            +++G C  N    A   F  M+  G  PN+VTF+ +++  CK  ++DEA SL +LMI+ 
Sbjct: 245 KILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEK 304

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           G+ PD   Y+ L++G    G++     LF
Sbjct: 305 GIVPDLVIYSILINGLFRAGKLEEGNSLF 333


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 25/251 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR+ PSP    +F I+    A     D  + LF  ++  G F DL + + +++  CK  R
Sbjct: 114 LRIGPSP---KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 170

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R LR  F+ D VT+  ++                     +   P+  TYNT
Sbjct: 171 VEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNT 229

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ G  + G +  A E FL+MK ++ + +VVTYT+V+ GF  A +   A+ +F EM+ +G
Sbjct: 230 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 289

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+V T+N ++  LCK   ++ A  + + M++ G  P+  TYN L+ G    G  +  +
Sbjct: 290 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 349

Query: 246 ELFVSMESMGC 256
           EL   ME+ GC
Sbjct: 350 ELMQRMENEGC 360



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 36/280 (12%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSL 58
           ER  S+G+       P++A+ +F   L MH       ++SFN +L  L K+K  +    L
Sbjct: 128 ERYASAGK-------PDKAVKLF---LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 177

Query: 59  FKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-- 115
           F+ L   G F  D  T+++++N +C + R      VL  ++     P++ T+ +++K   
Sbjct: 178 FRALR--GRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFF 235

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                              C+ D +TY T++ G    G + +A+ +F +M  + V P+V 
Sbjct: 236 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 295

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY ++I+  C  ++   A  +F EM+ +G +PNV T+NV++  L   G+      L+  M
Sbjct: 296 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 355

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G  P+  TYN ++  +     V  A  LF  M S  C
Sbjct: 356 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDC 395



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N++L      K     L + K +   G+ P+L T++ ++  F + G++ H +     +
Sbjct: 191 TYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 250

Query: 98  LRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCKQGFV 136
            +     DVVT+T++         IK  +            P   TYN +I  LCK+  V
Sbjct: 251 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 310

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  +F +M  +  +PNV TY  +IRG  +A +++  + L   M ++G +PN  T+N++
Sbjct: 311 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 370

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +    +  ++++A  L + M      P+  TYN L+ G  +  R
Sbjct: 371 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 414



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 34/172 (19%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           DA +++  ID   +         L  +M+   + P+  T+  V   +  A   ++A +LF
Sbjct: 84  DASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLF 143

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL-------------------------- 212
           + M + G   ++ +FN I+D LCK+ ++++A  L                          
Sbjct: 144 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIK 203

Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                   L  M++ G+ P+  TYNT+L GF   G++ HA E F+ M+   C
Sbjct: 204 RTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 255


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    D  + +   ++ TG  PDL T++IL+N  C+ G V     ++  + 
Sbjct: 227 YNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETME 286

Query: 99  RSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQGFVD 137
           RS   PD+ ++  L+K  CK                     D ++YNT+I   CK     
Sbjct: 287 RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTR 346

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           K  ELF +M  K ++P++VT+  +I  F      +  K+L  EM    V P+ + +  ++
Sbjct: 347 KGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVV 406

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCKNGK+D A S+   M+++GV PD  +YN LL+GFC T RV  A  LF  M+S G
Sbjct: 407 DHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKG 464



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 15/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN  L  L +    +T L LF  + S G  PD+ +++I+I+  C   R      V
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R++    +PD        K C         ++ GLC  G VD A EL + +    VK 
Sbjct: 177 WRRLIDKGLSPDY-------KACV-------ALVVGLCSGGRVDLAYELVVGVIKGGVKV 222

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N + Y ++I GFC     ++A ++   M   G  P++VT+N++++  C+ G +DEA  L+
Sbjct: 223 NSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLV 282

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS-MESMG 255
           + M + GV PD ++YN LL GFC    V+ A  + V  M++ G
Sbjct: 283 ETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKG 325



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI+L    +    D  + L + +  +G+ PDLY+++ L+  FCK   V    ++
Sbjct: 257 PDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLM 316

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +   +++    DVV++ ++I                     K  +PD +T+N +ID   +
Sbjct: 317 MVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR 376

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G     K+L  +M    V P+ + YT+V+   C     + A  +F +M++ GV P+V++
Sbjct: 377 EGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVIS 436

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +++  CK  ++ +A  L D M   G+ PD  TY  ++ G     +++ A  ++  M 
Sbjct: 437 YNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMM 496

Query: 253 SMG 255
             G
Sbjct: 497 ERG 499



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 82/139 (58%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   +NT ++ LC+Q  ++ A ELF  M  K   P+VV+YT +I   C A  ++EA ++
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           +  ++D+G+ P+      ++  LC  G++D A  L+  +I+ GV+ ++  YN L+DGFC 
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCR 236

Query: 238 TGRVNHAKELFVSMESMGC 256
            GRV+ A ++   M   GC
Sbjct: 237 MGRVDKAMKIKAFMSRTGC 255



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 24/240 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTV-LSLFKRLNSTGLFPDLYTHS 75
           +EA+ + + M R     P + S+N +L    K    D   L + +R+ + G+  D+ +++
Sbjct: 276 DEAVRLVETMER-SGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGM-CDVVSYN 333

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------KVCK--------- 117
            +I  FCK  R   G+ +   +      PD+VTF  LI          V K         
Sbjct: 334 TVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKM 393

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD I Y  ++D LCK G VD A  +F  M +  V P+V++Y +++ GFC  +   +A
Sbjct: 394 RVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDA 453

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM  +G+ P+ VT+ +I+  L +  K+  A  + D M++ G   +     TL++ 
Sbjct: 454 MHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNA 513


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 36/278 (12%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNS- 64
           T+TP++A  +FD +LR   +  P S  N  L  LA+              ++LF R+++ 
Sbjct: 35  TLTPDDAHHLFDGLLR-QTAQVPESVLNGFLSALARAPASAALRDGPALAVALFNRMSTG 93

Query: 65  TG---LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------- 114
           TG     P +YT+SILI+C C+  R+   F   G +LR     DV+  +SL++       
Sbjct: 94  TGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKR 153

Query: 115 ---------------VCKPDAITYNTIIDGLCKQGFVDKAKELF-LKMKDKNVKP-NVVT 157
                           C PDAI+Y+T++  +C  G    A ++  + +K     P NVV 
Sbjct: 154 TDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVV 213

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y++V+ G        EA  LF EM  QGV PNVVT+N ++  LCK   +D+A  +L  M+
Sbjct: 214 YSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV 273

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +GV+PD  TYNTL+ G+   G+   A  +F  M S G
Sbjct: 274 GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRG 311



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F+ M+R     P    FNI++   AK       + +F+ +   GL PD+ T+  +I+ F
Sbjct: 373 LFNLMVR-DGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAF 431

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           C+MG +         ++     P+   +  LI                     K   P  
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCI 491

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +++ ++I+ LCK+G V +A+ +F  +     K +V  +TS+I G+C     +EA R+   
Sbjct: 492 LSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDA 551

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+  G++P++VT+  +++  CKNG++D+   L   ++  GV+P  FTY  +LDG    GR
Sbjct: 552 MVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611

Query: 241 VNHAKELFVSMESMG 255
              AKE+F  M   G
Sbjct: 612 TAAAKEMFQEMIESG 626



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA   FD ML        + S++ +L   A       + +LF  +   G+ P+ +  +I
Sbjct: 333 EEAREFFDSML-AKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNI 391

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N + K G V     +   + +    PDV              +TY  +I   C+ G +
Sbjct: 392 LVNGYAKCGMVREAMFIFEDMQKRGLNPDV--------------LTYLAVIHAFCRMGSM 437

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A + F  M DK V+PN   Y  +I+GFC   D  +A+ L  E+ ++G+ P +++F  +
Sbjct: 438 DDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASL 497

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK G++ EA  + D++I+ G + D   + +L+DG+CL G+++ A  +  +M S+G
Sbjct: 498 INHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVG 556



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 31/257 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   F  +LR       +   +++ G     +  + V  LF R+   G  PD  ++S ++
Sbjct: 122 AFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVL 181

Query: 79  NCFCKMGR---------------------------VSHGFVVLGRILRSCFTPDVVTFTS 111
              C  GR                           V HG    G++  +C     +T   
Sbjct: 182 KSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQG 241

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           +     P+ +TYN++I  LCK   VDKA+ +  +M    V+P+ VTY ++I G+     W
Sbjct: 242 V----PPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQW 297

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A R+F EM  +GV PN VT +  +  LCK+G+++EA    D M+  G + +  +Y+TL
Sbjct: 298 KQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTL 357

Query: 232 LDGFCLTGRVNHAKELF 248
           L G+   G +     LF
Sbjct: 358 LHGYATAGCLVDMSNLF 374



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M +    PP V ++N ++  L K +  D    + +++   G+ PD  T++ 
Sbjct: 228 GEACDLFHEMTQ-QGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNT 286

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI          HG+  LG+  ++      +T   +I    P+ +T +T +  LCK G +
Sbjct: 287 LI----------HGYSTLGQWKQAVRMFKEMTSRGVI----PNTVTCSTFVAFLCKHGRI 332

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A+E F  M  K  K N+++Y++++ G+  A    +   LF  M+  G+ PN   FN++
Sbjct: 333 EEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNIL 392

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   K G + EA  + + M + G+ PD  TY  ++  FC  G ++ A + F  M   G
Sbjct: 393 VNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKG 451



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 23/228 (10%)

Query: 51  HYDTVLS--LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           H D V +  L   + + GL P + + + LIN  CK GRV     +   I+R+    DV  
Sbjct: 469 HGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNI 528

Query: 109 FTSLIK-VC--------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           FTSLI   C                    +PD +TY T+++G CK G +D    LF ++ 
Sbjct: 529 FTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELL 588

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            K VKP   TY  ++ G  +A     AK +F EM++ G+   + T+++++  LC+N   +
Sbjct: 589 HKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTE 648

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           EA ++   +    V+ D    N ++       R   A+ LF S+   G
Sbjct: 649 EAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYG 696



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 21/252 (8%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           Y +R     P + SF  ++  L K         +F  +  TG   D+   + LI+ +C +
Sbjct: 480 YEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLI 539

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITY 123
           G++S  F V   ++     PD+VT+ +L+  C                     KP   TY
Sbjct: 540 GKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTY 599

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
             I+DGL   G    AKE+F +M +  +   + TY+ ++ G C  N   EA  +F ++  
Sbjct: 600 GIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCA 659

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
             V+ ++V  N+++ ++ K  + +EA  L   +  +G+ P   TY  +++     G V  
Sbjct: 660 MNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEE 719

Query: 244 AKELFVSMESMG 255
           A+ +F  M   G
Sbjct: 720 AEGVFSVMLKSG 731



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 15/228 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M+ +   P  V+   ++ GC  KN   D  L LF+ L   G+ P  +T+ I
Sbjct: 543 SEAFRVHDAMVSVGIEPDIVTYGTLVNGC-CKNGRIDDGLILFRELLHKGVKPTTFTYGI 601

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++     GR +    +   ++ S            I V  P   TY+ ++ GLC+    
Sbjct: 602 ILDGLFHAGRTAAAKEMFQEMIESG-----------IAVTIP---TYSILLTGLCRNNCT 647

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A  +F K+   NVK ++V    +I     A    EA+ LF  + D G+ P V T+ ++
Sbjct: 648 EEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIM 707

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M+ L K G ++EA  +  +M++ G+ P +   N ++      G +  A
Sbjct: 708 MENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E L  F  MLR+   P  ++S N +L  L K  + D    +++ +   G+ P+LYT +IL
Sbjct: 251 EGLRSFRRMLRVGFVPTVITS-NYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNIL 309

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            +  CK G        L ++    F PD+VT              YNT+I+  C++G +D
Sbjct: 310 THVLCKDGDTGKVNKFLEKMEEEGFDPDIVT--------------YNTLINSYCRKGRLD 355

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L+  M  + V P++V+YT+++ G C      EA +LF  M+ +G+ P++VT+N ++
Sbjct: 356 DAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLI 415

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              CK GKM E+ SLL  MI +G+ PD+FT   L++G+   G+   A  L V ++  G
Sbjct: 416 HGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 473



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 23/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI+   L K+     V    +++   G  PD+ T++ LIN +C+ GR+   F +
Sbjct: 301 PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYL 360

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              + R    PD+V++T+L+  +CK                    PD +TYNT+I G CK
Sbjct: 361 YKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCK 420

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +++ L   M    + P+  T   ++ G+     +  A  L +E+   GV  +   
Sbjct: 421 EGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDI 480

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LC+  +   A +LL+ M Q G + +   YN L+  FC    +  A+ L + ME
Sbjct: 481 YSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCI--AEALLLKME 538



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 56/271 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++    +    D    L+K +   G+ PDL +++ L+N  CK GRV     +
Sbjct: 336 PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQL 395

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAIT---------- 122
             R++    +PD+VT+ +LI   CK                    PD+ T          
Sbjct: 396 FHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGK 455

Query: 123 -------------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                    Y+ +I  LC++     AK L  +M     K  +  
Sbjct: 456 EGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEI 515

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I+ FC  +   EA  L +EM+D+ ++PN+ T+  ++  L +  +  E  SL+  M+
Sbjct: 516 YNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMV 575

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             G  PD      L  G+C    ++ A+ L 
Sbjct: 576 ASGXLPDLEICRALFYGYCRENDIDKAESLL 606



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 6/208 (2%)

Query: 54  TVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFT--PDVVTFT 110
           T LS F  + N  GL P    + I+++        S     L  ++       P    F 
Sbjct: 161 TALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFK 220

Query: 111 SLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
           +LI   + C  D + ++ ++    + G V +    F +M      P V+T   ++ G   
Sbjct: 221 NLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK 280

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            N  +    ++ EM   G+ PN+ TFN++   LCK+G   + +  L+ M + G  PD  T
Sbjct: 281 LNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVT 340

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL++ +C  GR++ A  L+  M   G
Sbjct: 341 YNTLINSYCRKGRLDDAFYLYKIMYRRG 368



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 117/319 (36%), Gaps = 92/319 (28%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  ++  M R    P  VS   +M G L K         LF R+   GL PD+ T++ 
Sbjct: 355 DDAFYLYKIMYRRGVVPDLVSYTALMNG-LCKEGRVREAHQLFHRMVHRGLSPDIVTYNT 413

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI--------------- 121
           LI+ +CK G++     +L  ++ +  +PD  T   L++    +                 
Sbjct: 414 LIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 473

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  Y+ +I  LC++     AK L  +M     K  +  Y  +I+ FC  +   EA 
Sbjct: 474 VSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEAL 533

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDEL----------------------------------- 200
            L +EM+D+ ++PN+ T+  ++  L                                   
Sbjct: 534 LLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGY 593

Query: 201 CKNGKMDEASSLL-----------------------------------DLMIQHGVRPDA 225
           C+   +D+A SLL                                   D+M++ G+ P+ 
Sbjct: 594 CRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNP 653

Query: 226 FTYNTLLDGFCLTGRVNHA 244
            T   ++DG     RV+ A
Sbjct: 654 LTCKYVIDGLWKARRVDSA 672


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I GLC+
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCR 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L ++M  K +KP+ +TYT++I G C   D   A  L   M+++ ++ + V 
Sbjct: 289 KGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++GFC  G V  A +L   M+
Sbjct: 349 YTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+I+G  + G +DK   L   
Sbjct: 151 EI--------RLAQSVF--DAITKCGL----RPSVVSFNTLINGYIRLGDLDKGFRLKTA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V P+V T T +I G C  +  +EA  LF EM+D+G+ PN VTF  ++D  CK+G+
Sbjct: 197 MHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M++ G  PD  TYNTL+ G C  G +  A++L V M   G
Sbjct: 257 VDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKG 306



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 23/218 (10%)

Query: 29  MHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V +  +++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 197 MHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++LR  ++PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A EL  +M +++++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P   T+ +I++  CK G +  AS LL  M + G  P
Sbjct: 377 LKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+  F  M R    P    S N +L   AK    D V   FK +   G  P ++T++I
Sbjct: 209 EEAIQCFSKMKRFRVFPK-TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           +I+C CK G V     +   +      PD VT+ S+I                       
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD ITYN +I+  CK G +    E + +MK   +KPNVV+Y++++  FC      +A 
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + +++M   G+ PN  T+  ++D  CK G + +A  L + M+Q GV  +  TY  L+DG 
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 447

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   R+  A+ELF  M++ G
Sbjct: 448 CDAERMKEAEELFGKMDTAG 467



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 56/280 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V ++NIM+ C+ K    +    LF+ +   GL PD  T++ +I+ F K+GR+    
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
                +   C  PDV+T+ +LI                        KP+ ++Y+T++D  
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Query: 131 CKQGFVDKAKELFLKMK---------------DKN--------------------VKPNV 155
           CK+G + +A + ++ M+               D N                    V+ NV
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 437

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYT++I G C A    EA+ LF +M   GV PN+ ++N ++    K   MD A  LL+ 
Sbjct: 438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 497

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   G++PD   Y T + G C   ++  AK +   M+  G
Sbjct: 498 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ +C F+ M  M    P V ++N ++ C  K       L  ++ +   GL P++ ++S 
Sbjct: 314 DDTVCFFEEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----PDA----------- 120
           L++ FCK G +         + R    P+  T+TSLI   CK     DA           
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432

Query: 121 -----ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                +TY  +IDGLC    + +A+ELF KM    V PN+ +Y ++I GF  A + + A 
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  E+  +G++P+++ +   +  LC   K++ A  +++ M + G++ ++  Y TL+D +
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552

Query: 236 CLTGRVNHAKELFVSMESM 254
             +G       L   M+ +
Sbjct: 553 FKSGNPTEGLHLLDEMKEL 571



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    F+ +   L      +  +  F ++    +FP   + + L++ F K+G+       
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGK------- 242

Query: 94  LGRILRSCFTPDVVTF-TSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                    T DV  F   +I    +P   TYN +ID +CK+G V+ A+ LF +MK + +
Sbjct: 243 ---------TDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 293

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+ VTY S+I GF      ++    F EM D   +P+V+T+N +++  CK GK+     
Sbjct: 294 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 353

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               M  +G++P+  +Y+TL+D FC  G +  A + +V M  +G
Sbjct: 354 FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    K       +  +  +   GL P+ YT++ LI+  CK+G +S  F +
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L+     +VVT+T+LI  +C                     P+  +YN +I G  K
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A EL  ++K + +KP+++ Y + I G C       AK +  EM + G++ N + 
Sbjct: 485 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 544

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  +MD   K+G   E   LLD M +  +     T+  L+DG C    V+ A + F
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 600



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++S+N ++    K K+ D  L L   L   G+ PDL  +   I   C + ++    VV
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +  +       + + +T+L+                        +   +T+  +IDGLCK
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589

Query: 133 QGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
              V KA + F ++  D  ++ N   +T++I G C  N    A  LF +M+ +G+ P+  
Sbjct: 590 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +MD   K G + EA +L D M + G++ D   Y +L+ G     ++  A+     M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709

Query: 252 ESMG 255
              G
Sbjct: 710 IGEG 713



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           VC P    ++ +   L   G +++A + F KMK   V P   +   ++  F      ++ 
Sbjct: 187 VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           KR F +M+  G +P V T+N+++D +CK G ++ A  L + M   G+ PD  TYN+++DG
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           F   GR++     F  M+ M C
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCC 328



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
           P E L + D M  +      V +F +++  L KNK     +  F R+ N  GL  +    
Sbjct: 558 PTEGLHLLDEMKELDIEVT-VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIF 616

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + +I+  CK  +V     +  ++++              K   PD   Y +++DG  KQG
Sbjct: 617 TAMIDGLCKDNQVEAATTLFEQMVQ--------------KGLVPDRTAYTSLMDGNFKQG 662

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A  L  KM +  +K +++ YTS++ G  + N   +A+    EM+ +G+ P+ V   
Sbjct: 663 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 722

Query: 195 VIMDELCKNGKMDEASSLLDLMIQH 219
            ++ +  + G +DEA  L   +++H
Sbjct: 723 SVLKKHYELGCIDEAVELQSYLMKH 747


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 135/256 (52%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  +L+   SP  +    ++ G   K +   T L +FK + S G+FPD+  +++
Sbjct: 537 DEALALFFQLLKKGFSPDHIIYCTLIDG-FCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------KVCK--- 117
           LIN F + G V +   +L  I++    PD+VT+ ++I                +V K   
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+AIT+  +ID  CK G +D A  +F  M ++  +PN++TY+ +I G+    +   A 
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ +M+   V PN+V++++++D LCK G M+EAS      I   + PD   Y  L+ G+
Sbjct: 716 ELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 236 CLTGRVNHAKELFVSM 251
           C  GR+  A  L+  M
Sbjct: 776 CKVGRLAEAMMLYDHM 791



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 22/250 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M+R  PSP  V+ F+ ++    K    D   SL+  +   G+ PDL  +SILIN   
Sbjct: 263 FDMMVRSGPSPNLVT-FSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAI 121
           + G++  G  +    L      DVV F+S++                         P+ +
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY+ +I+GLC+ G V +A  +F ++  + ++P+V+TY+S+I GFC + +  +   L+  M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + +G  P+VV  +++++ L + G MDEA       ++ G+  + + +N L+DG     R 
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT 501

Query: 242 NHAKELFVSM 251
               ++++ M
Sbjct: 502 RDGLKMYILM 511



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 57/287 (19%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ ++  ML+   SP  V +++I++  L +N        +F ++   GL P + T+S L
Sbjct: 363 KAIEVYTRMLKEGISPN-VVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVT----------------------------- 108
           I+ FCK   +  GF + G +LR    PDVV                              
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 109 ------FTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAKE 141
                 F +LI  C                      PD +TY  ++ GL +QG +D+A  
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALA 541

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF ++  K   P+ + Y ++I GFC   D     ++F  M   G+ P++  +NV+++   
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + G ++    LL  +I++G+ PD  TYNT++ G+C     + A +LF
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF 648



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 14/203 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +   N +L  L            F  +  +G  P+L T S LIN +CK  R+   F +
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              ++     PD+V               Y+ +I+GL + G +++   LF     + VK 
Sbjct: 298 YNLMIEKGIVPDLVI--------------YSILINGLFRAGKLEEGNSLFSMALARGVKM 343

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VV ++S++  +    D  +A  ++  M+ +G+ PNVVT++++++ LC+NG++ EA  + 
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
             +++ G+ P   TY++L+DGFC
Sbjct: 404 GQILKQGLEPSVLTYSSLIDGFC 426



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 51/249 (20%)

Query: 39  FNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           FN ++ GC    +  D  L ++  +    + PD+ T+++L+    + GR+     +  ++
Sbjct: 488 FNALIDGCFRLKRTRDG-LKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQL 546

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK------------------------- 132
           L+  F+PD               I Y T+IDG CK                         
Sbjct: 547 LKKGFSPD--------------HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICI 592

Query: 133 ----------QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
                     +G V+   EL  ++    ++P++VTY ++I G+C    +++A +LF  + 
Sbjct: 593 YNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLK 652

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
               QPN +TF +++D  CK+G+MD+A  +   M++ G  P+  TY+ L+DG+  T    
Sbjct: 653 CGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTE 712

Query: 243 HAKELFVSM 251
            A EL+  M
Sbjct: 713 SAFELYEKM 721



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 27/260 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+  F +M +M  S    ++ + ML  L  +   D +L      N   +   L  +  
Sbjct: 157 DRAVDTFAWMSKMGVSISHYAA-SEMLDLLIDSDRIDVILE-----NYEEMCKGLGVYEF 210

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           + N F K G V  G      ++     P +V    ++K +C                   
Sbjct: 211 VFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +T++T+I+  CK+  +D+A  L+  M +K + P++V Y+ +I G   A    E  
Sbjct: 271 PSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGN 330

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF   + +GV+ +VV F+ IMD   + G + +A  +   M++ G+ P+  TY+ L++G 
Sbjct: 331 SLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGL 390

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GRV  A  +F  +   G
Sbjct: 391 CRNGRVLEACGVFGQILKQG 410



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 38/268 (14%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-- 73
           P  AL  F++         PV SF  +   L +++ +D    +F R+   G F +L    
Sbjct: 69  PTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRM--VGQFGNLEVLG 126

Query: 74  ----------------HSILINCFCKMGRVSHG---FVVLGRILRSCFTPDVVTFTSLI- 113
                           +S L++C+C+ G V      F  + ++  S           L+ 
Sbjct: 127 EFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLI 186

Query: 114 -------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        ++CK   + Y  + +   K+G V+K       + ++ + P +V    
Sbjct: 187 DSDRIDVILENYEEMCKGLGV-YEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNK 245

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +++G C  N    A   F  M+  G  PN+VTF+ +++  CK  ++DEA SL +LMI+ G
Sbjct: 246 ILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKG 305

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           + PD   Y+ L++G    G++     LF
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLF 333



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   T     A  +++ ML    SP  VS ++I++  L K    +     F+      L
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVS-YSILIDGLCKKGLMEEASLAFQCAIGRHL 761

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+  + ILI  +CK+GR++   ++   +L +   PD +   +L +    D+   N ++
Sbjct: 762 LPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQAKNCVL 821

Query: 128 D 128
           +
Sbjct: 822 N 822


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 25/251 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR+ PSP    +F I+    A     D  + LF  ++  G F DL + + +++  CK  R
Sbjct: 120 LRIGPSP---KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R LR  F+ D VT+  ++                     +   P+  TYNT
Sbjct: 177 VEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNT 235

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ G  + G +  A E FL+MK ++ + +VVTYT+V+ GF  A +   A+ +F EM+ +G
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 295

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+V T+N ++  LCK   ++ A  + + M++ G  P+  TYN L+ G    G  +  +
Sbjct: 296 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 355

Query: 246 ELFVSMESMGC 256
           EL   ME+ GC
Sbjct: 356 ELMQRMENEGC 366



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 36/280 (12%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSL 58
           ER  S+G+       P++A+ +F   L MH       ++SFN +L  L K+K  +    L
Sbjct: 134 ERYASAGK-------PDKAVKLF---LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183

Query: 59  FKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-- 115
           F+ L   G F  D  T+++++N +C + R      VL  ++     P++ T+ +++K   
Sbjct: 184 FRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                              C+ D +TY T++ G    G + +A+ +F +M  + V P+V 
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY ++I+  C  ++   A  +F EM+ +G +PNV T+NV++  L   G+      L+  M
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G  P+  TYN ++  +     V  A  LF  M S  C
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDC 401



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N++L      K     L + K +   G+ P+L T++ ++  F + G++ H +     +
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256

Query: 98  LRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCKQGFV 136
            +     DVVT+T++         IK  +            P   TYN +I  LCK+  V
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 316

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  +F +M  +  +PNV TY  +IRG  +A +++  + L   M ++G +PN  T+N++
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 376

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +    +  ++++A  L + M      P+  TYN L+ G  +  R
Sbjct: 377 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 34/172 (19%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           DA +++  ID   +         L  +M+   + P+  T+  V   +  A   ++A +LF
Sbjct: 90  DASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLF 149

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL-------------------------- 212
           + M + G   ++ +FN I+D LCK+ ++++A  L                          
Sbjct: 150 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIK 209

Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                   L  M++ G+ P+  TYNT+L GF   G++ HA E F+ M+   C
Sbjct: 210 RTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 25/251 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR+ PSP    +F I+    A     D  + LF  ++  G F DL + + +++  CK  R
Sbjct: 120 LRIGPSP---KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +  R LR  F+ D VT+  ++                     +   P+  TYNT
Sbjct: 177 VEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNT 235

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ G  + G +  A E FL+MK ++ + +VVTYT+V+ GF  A +   A+ +F EM+ +G
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 295

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V P+V T+N ++  LCK   ++ A  + + M++ G  P+  TYN L+ G    G  +  +
Sbjct: 296 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 355

Query: 246 ELFVSMESMGC 256
           EL   ME+ GC
Sbjct: 356 ELMQRMENEGC 366



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 36/280 (12%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSL 58
           ER  S+G+       P++A+ +F   L MH       ++SFN +L  L K+K  +    L
Sbjct: 134 ERYASAGK-------PDKAVKLF---LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183

Query: 59  FKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-- 115
           F+ L   G F  D  T+++++N +C + R      VL  ++     P++ T+ +++K   
Sbjct: 184 FRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                              C+ D +TY T++ G    G + +A+ +F +M  + V P+V 
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY ++I+  C  ++   A  +F EM+ +G +PNV T+NV++  L   G+      L+  M
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              G  P+  TYN ++  +     V  A  LF  M S  C
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDC 401



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 24/239 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++++N ML    +          F  +       D+ T++ +++ F   G +     V
Sbjct: 228 PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNV 287

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              ++R    P V T+ ++I+V CK                    P+  TYN +I GL  
Sbjct: 288 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 347

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   + +EL  +M+++  +PN  TY  +IR +   ++  +A  LF +M      PN+ T
Sbjct: 348 AGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDT 407

Query: 193 FNVIMDELCKNGKMDE---ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +N+++  +    + ++   A  LL  M++ G  P  FT+N +L+G  LTG    AKE+ 
Sbjct: 408 YNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEIL 466



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N++L      K     L + K +   G+ P+L T++ ++  F + G++ H +     +
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256

Query: 98  LRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCKQGFV 136
            +     DVVT+T++         IK  +            P   TYN +I  LCK+  V
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 316

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  +F +M  +  +PNV TY  +IRG  +A +++  + L   M ++G +PN  T+N++
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 376

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +    +  ++++A  L + M      P+  TYN L+ G  +  R
Sbjct: 377 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 34/172 (19%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           DA +++  ID   +         L  +M+   + P+  T+  V   +  A   ++A +LF
Sbjct: 90  DASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLF 149

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL-------------------------- 212
           + M + G   ++ +FN I+D LCK+ ++++A  L                          
Sbjct: 150 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIK 209

Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                   L  M++ G+ P+  TYNT+L GF   G++ HA E F+ M+   C
Sbjct: 210 RTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+M+   ++    +  L LF+++ S    P+L T++ILI+      R S   VV
Sbjct: 368 PNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR-SEDMVV 426

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
            G++L        +          P   T+N +++GL   G    AKE+ L+++ K+
Sbjct: 427 AGKLLLEMVERGFI----------PRKFTFNRVLNGLLLTGNQAFAKEI-LRLQSKS 472


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 37/260 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      D    LF+ + S  + PD++T++ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++R    P+VVT+T+LI                       C P+ +TY  +IDG CK
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 133 QGFVDKAKELFLKMK---------------DKNVK-PNVVTYTSVIRGFCYANDWNEAKR 176
            G ++KA +++ +M+               D N++ PN+ TY +++ G C A+   EA+ 
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M  +G +PN + ++ ++D  CK GK+DEA  +   M + G  P+ +TY++L+D   
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 237 LTGRVNHAKELFVSMESMGC 256
              R++ A ++   M    C
Sbjct: 718 KDKRLDLALKVLSRMLENSC 737



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD M+R     P V ++  ++    K +   +   LF+ + S G  P++ T++ 
Sbjct: 532 QQARKWFDEMVR-DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQG 134
           LI+  CK G++     +  R+  +   PDV  +  +    +  P+  TY  ++DGLCK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A++L   M  +  +PN + Y ++I GFC     +EA+ +F +M ++G  PNV T++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D L K+ ++D A  +L  M+++   P+   Y  ++DG C  G+ + A  L   ME  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 255 GC 256
           GC
Sbjct: 771 GC 772



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 30/228 (13%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     ++   S+ + + S G  PD  T+S +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           DV T+T LI              D  CK G + +A++ F +M      PNVVTYT++I  
Sbjct: 514 DVFTYTILI--------------DSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHA 559

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +  A   + A  LF  M+ +G  PNVVT+  ++D  CK+G++++A  +   M  +   PD
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 225 A----------------FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                            FTY  L+DG C   +V  A++L   M   GC
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 117/274 (42%), Gaps = 54/274 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K         L   ++  G  P+   +  LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++    + P+V T++SLI                       C P+ I Y  +IDGLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A  L   M++K   PNVVTYT++I GF  A   ++   L  +M  +G  PN VT
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ-------HGVR----------------------- 222
           + V+++  C  G +D+A  LLD M Q        G R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 223 ---PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              P    Y  L+D FC  GR+  A EL   M S
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 20/224 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGRV 87
           P    +NI++G +  N+   +  VL L ++     L   +  + +    L  C C  G+ 
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
              + ++  ++   F PD  T++ +I +              LC    VD A  LF +MK
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGL--------------LCNASKVDNAFLLFEEMK 507

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
             +V P+V TYT +I  FC      +A++ F EM+  G  PNVVT+  ++    K  KM 
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMS 567

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            A+ L ++M+  G  P+  TY  L+DG C +G++  A +++  M
Sbjct: 568 SANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARM 611



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           D++ RM  S   P V ++ I+L GCL K +       +   + + G +P     + LI+ 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ------G 134
           +C+ G  S+ + +L + +  C              C+P  + YN +I G+C         
Sbjct: 379 YCRSGDYSYAYKLLKK-MGDCG-------------CQPGYVVYNILIGGICGNEKLPSLD 424

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A++ + +M D +V  N V  +++ R  C A  + +A  +  EMM +G  P+  T++
Sbjct: 425 VLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LC   K+D A  L + M  + V PD FTY  L+D FC  G +  A++ F  M   
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 255 GC 256
           GC
Sbjct: 545 GC 546



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 18/216 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N+++    +N  ++  L    RL   G  P   T++ L+  F +  R+   ++V   + 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 99  RSCFTPDVVTFTSLIKV-CKP-----------------DAITYNTIIDGLCKQGFVDKAK 140
            S F  D  T    + + CK                  D + Y  +I GLC+    ++A 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +   +M+  +  PNVVTY  ++ G          KR+   M+ +G  P+   FN ++   
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           C++G    A  LL  M   G +P    YN L+ G C
Sbjct: 380 CRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC 415



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           N+ +   L L   +      P +  + ILI+ FCK GR+    + L + + SC +     
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA-LELHKEMSSCTSYSAA- 914

Query: 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                     D   Y+++I+ L     VDKA EL+  M  +   P +  +  +++G    
Sbjct: 915 ----------DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964

Query: 169 NDWNEAKRL 177
           N W EA +L
Sbjct: 965 NRWEEALQL 973


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 37/260 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      D    LF+ + S  + PD++T++ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++R    P+VVT+T+LI                       C P+ +TY  +IDG CK
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 133 QGFVDKAKELFLKMK---------------DKNVK-PNVVTYTSVIRGFCYANDWNEAKR 176
            G ++KA +++ +M+               D N++ PN+ TY +++ G C A+   EA+ 
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M  +G +PN + ++ ++D  CK GK+DEA  +   M + G  P+ +TY++L+D   
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 237 LTGRVNHAKELFVSMESMGC 256
              R++ A ++   M    C
Sbjct: 718 KDKRLDLALKVLSRMLENSC 737



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD M+R     P V ++  ++    K +   +   LF+ + S G  P++ T++ 
Sbjct: 532 QQARKWFDEMVR-DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQG 134
           LI+  CK G++     +  R+  +   PDV  +  +    +  P+  TY  ++DGLCK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A++L   M  +  +PN + Y ++I GFC     +EA+ +F +M ++G  PNV T++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D L K+ ++D A  +L  M+++   P+   Y  ++DG C  G+ + A  L   ME  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 255 GC 256
           GC
Sbjct: 771 GC 772



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 30/228 (13%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     ++   S+ + + S G  PD  T+S +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           DV T+T LI              D  CK G + +A++ F +M      PNVVTYT++I  
Sbjct: 514 DVFTYTILI--------------DSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHA 559

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +  A   + A  LF  M+ +G  PNVVT+  ++D  CK+G++++A  +   M  +   PD
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 225 A----------------FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                            FTY  L+DG C   +V  A++L   M   GC
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 117/274 (42%), Gaps = 54/274 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K         L   ++  G  P+   +  LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++    + P+V T++SLI                       C P+ I Y  +IDGLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A  L   M++K   PNVVTYT++I GF  A   ++   L  +M  +G  PN VT
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ-------HGVR----------------------- 222
           + V+++  C  G +D+A  LLD M Q        G R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 223 ---PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              P    Y  L+D FC  GR+  A EL   M S
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGRV 87
           P    +NI++G +  N+   +  VL L ++     L   +  + +    L  C C  G+ 
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
              + ++  ++   F PD  T++ +I +              LC    VD A  LF +MK
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGL--------------LCNASKVDNAFLLFEEMK 507

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
             +V P+V TYT +I  FC      +A++ F EM+  G  PNVVT+  ++    K  KM 
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMS 567

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            A+ L ++M+  G  P+  TY  L+DG C +G++  A +++  M 
Sbjct: 568 SANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR 612



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           D++ RM  S   P V ++ I+L GCL K +       +   + + G +P     + LI+ 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ------G 134
           +C+ G  S+ + +L + +  C              C+P  + YN +I G+C         
Sbjct: 379 YCRSGDYSYAYKLLKK-MGDCG-------------CQPGYVVYNILIGGICGNEKLPSLD 424

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A++ + +M D +V  N V  +++ R  C A  + +A  +  EMM +G  P+  T++
Sbjct: 425 VLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LC   K+D A  L + M  + V PD FTY  L+D FC  G +  A++ F  M   
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 255 GC 256
           GC
Sbjct: 545 GC 546



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 18/216 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N+++    +N  ++  L    RL   G  P   T++ L+  F +  R+   ++V   + 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 99  RSCFTPDVVTFTSLIKV-CKP-----------------DAITYNTIIDGLCKQGFVDKAK 140
            S F  D  T    + + CK                  D + Y  +I GLC+    ++A 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +   +M+  +  PNVVTY  ++ G          KR+   M+ +G  P+   FN ++   
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           C++G    A  LL  M   G +P    YN L+ G C
Sbjct: 380 CRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC 415



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           N+ +   L L   +      P +  + ILI+ FCK GR+    + L + + SC +     
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA-LELHKEMSSCTSYSAA- 914

Query: 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                     D   Y+++I+ L     VDKA EL+  M  +   P +  +  +++G    
Sbjct: 915 ----------DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964

Query: 169 NDWNEAKRL 177
           N W EA +L
Sbjct: 965 NRWEEALQL 973


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 37/260 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      D    LF+ + S  + PD++T++ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              ++R    P+VVT+T+LI                       C P+ +TY  +IDG CK
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 133 QGFVDKAKELFLKMK---------------DKNVK-PNVVTYTSVIRGFCYANDWNEAKR 176
            G ++KA +++ +M+               D N++ PN+ TY +++ G C A+   EA+ 
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M  +G +PN + ++ ++D  CK GK+DEA  +   M + G  P+ +TY++L+D   
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 237 LTGRVNHAKELFVSMESMGC 256
              R++ A ++   M    C
Sbjct: 718 KDKRLDLALKVLSRMLENSC 737



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD M+R     P V ++  ++    K +   +   LF+ + S G  P++ T++ 
Sbjct: 532 QQARKWFDEMVR-DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--KVCKPDAITYNTIIDGLCKQG 134
           LI+  CK G++     +  R+  +   PDV  +  +    +  P+  TY  ++DGLCK  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A++L   M  +  +PN + Y ++I GFC     +EA+ +F +M ++G  PNV T++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D L K+ ++D A  +L  M+++   P+   Y  ++DG C  G+ + A  L   ME  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 255 GC 256
           GC
Sbjct: 771 GC 772



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 30/228 (13%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     ++   S+ + + S G  PD  T+S +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           DV T+T LI              D  CK G + +A++ F +M      PNVVTYT++I  
Sbjct: 514 DVFTYTILI--------------DSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHA 559

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +  A   + A  LF  M+ +G  PNVVT+  ++D  CK+G++++A  +   M  +   PD
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 225 A----------------FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                            FTY  L+DG C   +V  A++L   M   GC
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 117/274 (42%), Gaps = 54/274 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K         L   ++  G  P+   +  LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++    + P+V T++SLI                       C P+ I Y  +IDGLCK
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A  L   M++K   PNVVTYT++I GF  A   ++   L  +M  +G  PN VT
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ-------HGVR----------------------- 222
           + V+++  C  G +D+A  LLD M Q        G R                       
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 223 ---PDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              P    Y  L+D FC  GR+  A EL   M S
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKXMSS 907



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 20/225 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGRV 87
           P    +NI++G +  N+   +  VL L ++     L   +  + +    L  C C  G+ 
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
              + ++  ++   F PD  T++ +I +              LC    VD A  LF +MK
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGL--------------LCNASKVDNAFLLFEEMK 507

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
             +V P+V TYT +I  FC      +A++ F EM+  G  PNVVT+  ++    K  KM 
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMS 567

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            A+ L ++M+  G  P+  TY  L+DG C +G++  A +++  M 
Sbjct: 568 SANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMR 612



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           D++ RM  S   P V ++ I+L GCL K +       +   + + G +P     + LI+ 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ------G 134
           +C+ G  S+ + +L + +  C              C+P  + YN +I G+C         
Sbjct: 379 YCRSGDYSYAYKLLKK-MGDCG-------------CQPGYVVYNILIGGICGNEKLPSLD 424

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A++ + +M D +V  N V  +++ R  C A  + +A  +  EMM +G  P+  T++
Sbjct: 425 VLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LC   K+D A  L + M  + V PD FTY  L+D FC  G +  A++ F  M   
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 255 GC 256
           GC
Sbjct: 545 GC 546



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 18/216 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N+++    +N  ++  L    RL   G  P   T++ L+  F +  R+   ++V   + 
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 99  RSCFTPDVVTFTSLIKV-CKP-----------------DAITYNTIIDGLCKQGFVDKAK 140
            S F  D  T    + + CK                  D + Y  +I GLC+    ++A 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +   +M+  +  PNVVTY  ++ G          KR+   M+ +G  P+   FN ++   
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           C++G    A  LL  M   G +P    YN L+ G C
Sbjct: 380 CRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC 415



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           N+ +   L L   +      P +  + ILI+ FCK GR+    + L + + SC +     
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA-LELHKXMSSCTSYSAA- 914

Query: 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                     D   Y+++I+ L     VDKA EL+  M  +   P +  +  +++G    
Sbjct: 915 ----------DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRI 964

Query: 169 N 169
           N
Sbjct: 965 N 965


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N+++ C  + K  D     F+ +   G+ P+L T + LIN  CK G +     +L 
Sbjct: 429 VFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLE 488

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L +   PD+ TF+S              I+DGLC+    ++A E F +M +  + PN 
Sbjct: 489 SLLENGLKPDIFTFSS--------------IVDGLCQIKRTEEALECFTEMIEWGINPNA 534

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V Y  +IR  C   D   + +L   M  +G+ P+  ++N ++   C+  K+++A  L D 
Sbjct: 535 VIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDS 594

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M + G+ PD +TY+  ++    +GR+  AK++F SME+ GC
Sbjct: 595 MSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGC 635



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 20/233 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK-- 83
           +LR       + ++  ++  L KN+  +    ++ +L S GL  ++++++++INCFC+  
Sbjct: 384 ILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAK 443

Query: 84  -MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
            M   S  F       R      VV          P+ +T+NT+I+G CK G +DKA++L
Sbjct: 444 LMDNASEAF-------RDMQVRGVV----------PNLVTFNTLINGHCKDGAIDKARKL 486

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              + +  +KP++ T++S++ G C      EA   F EM++ G+ PN V +N+++  LC 
Sbjct: 487 LESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCT 546

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G +  +  LL  M + G+ PD ++YN L+  FC   +V  AK+LF SM   G
Sbjct: 547 IGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSG 599



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++    K+   D    L + L   GL PD++T S +++  C++ R       
Sbjct: 462 PNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALEC 521

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
              ++     P+ V +  LI+ +C                     PD  +YN +I   C+
Sbjct: 522 FTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCR 581

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V+KAK+LF  M    + P+  TY++ I     +    EAK++F  M   G  P+   
Sbjct: 582 MNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYI 641

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            N+I+  L +   ++EA ++++   Q G+
Sbjct: 642 CNLIIKILVQQEYVEEAQNIIERCRQKGI 670



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 50/82 (60%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  D  TYNT+I G+CK G VD+A  L  +MKDK   PNV TYT +I GFC A+  +EA 
Sbjct: 210 CVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAF 269

Query: 176 RLFIEMMDQGVQPNVVTFNVIM 197
            +F  M D GV PN  T   ++
Sbjct: 270 GVFETMKDSGVYPNEATVRALV 291



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           GR+  + ++  V    S + +  P    YN +ID L K   +D A   F +M   N   +
Sbjct: 155 GRLGLANYSAHVFCQISFLGL-SPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVAD 213

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
             TY ++I G C     +EA RL  +M D+G  PNV T+ ++++  C   ++DEA  + +
Sbjct: 214 RFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFE 273

Query: 215 LMIQHGVRPDAFTYNTLLDG 234
            M   GV P+  T   L+ G
Sbjct: 274 TMKDSGVYPNEATVRALVHG 293



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 107/297 (36%), Gaps = 89/297 (29%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   D     F+++ +     D +T++ LI+  CK+G V     +
Sbjct: 177 PTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRL 236

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++      P+V T+T L              I+G C    VD+A  +F  MKD  V P
Sbjct: 237 VRQMKDKGHFPNVFTYTML--------------IEGFCIASRVDEAFGVFETMKDSGVYP 282

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----------------------------- 184
           N  T  +++ G     D ++A  L  E +D+                             
Sbjct: 283 NEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEM 342

Query: 185 -----------GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP---------- 223
                      G  P    FNV+M  L K  ++ E   + +++ + GV+           
Sbjct: 343 VVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIE 402

Query: 224 -------------------------DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                                    + F+YN +++ FC    +++A E F  M+  G
Sbjct: 403 VLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRG 459



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G  + +  +F ++    + P    Y ++I     +N  + A   F +M       +  
Sbjct: 156 RLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRF 215

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++  +CK G +DEA  L+  M   G  P+ FTY  L++GFC+  RV+ A  +F +M
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 252 ESMG 255
           +  G
Sbjct: 276 KDSG 279



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 21/179 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F+ ++  L + K  +  L  F  +   G+ P+   ++ILI   C +G V+    +
Sbjct: 497 PDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKL 556

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
           L R+ +   +PD  ++ +LI++ C+                    PD  TY+  I+ L +
Sbjct: 557 LRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSE 616

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G +++AK++F  M+     P+      +I+         EA+ +      +G+  N +
Sbjct: 617 SGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGISLNSI 675


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E L  F  MLR+   P  ++S N +L  L K  + D    +++ +   G+ P+LYT +IL
Sbjct: 206 EGLRSFRRMLRVGFVPTVITS-NYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNIL 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            +  CK G        L ++    F PD+VT              YNT+I+  C++G +D
Sbjct: 265 THVLCKDGDTGKVNKFLEKMEEEGFDPDIVT--------------YNTLINSYCRKGRLD 310

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L+  M  + V P++V+YT+++ G C      EA +LF  M+ +G+ P++VT+N ++
Sbjct: 311 DAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLI 370

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              CK GKM E+ SLL  MI +G+ PD+FT   L++G+   G+   A  L V ++  G
Sbjct: 371 HGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 428



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 23/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI+   L K+     V    +++   G  PD+ T++ LIN +C+ GR+   F +
Sbjct: 256 PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYL 315

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              + R    PD+V++T+L+  +CK                    PD +TYNT+I G CK
Sbjct: 316 YKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCK 375

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +++ L   M    + P+  T   ++ G+     +  A  L +E+   GV  +   
Sbjct: 376 EGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDI 435

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ ++  LC+  +   A +LL+ M + G +P+   YN L+  FC    +  A+ L + ME
Sbjct: 436 YSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCI--AEALLLKME 493



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 112/271 (41%), Gaps = 56/271 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++    +    D    L+K +   G+ PDL +++ L+N  CK GRV     +
Sbjct: 291 PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQL 350

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAIT---------- 122
             R++    +PD+VT+ +LI   CK                    PD+ T          
Sbjct: 351 FHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGK 410

Query: 123 -------------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                    Y+ +I  LC++     AK L  +M     KP +  
Sbjct: 411 EGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEI 470

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I+ FC  +   EA  L +EM+D+ ++PN+ T+  ++  L +  +  E  SL+  M+
Sbjct: 471 YNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMV 530

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             G+ PD      L  G+C    ++ A+ L 
Sbjct: 531 ASGMLPDLEICRALFYGYCRENDIDKAESLL 561



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 6/208 (2%)

Query: 54  TVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFT--PDVVTFT 110
           T LS F  + N  GL P    + I+++        S     L  ++       P    F 
Sbjct: 116 TALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFK 175

Query: 111 SLI---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
           +LI   + C  D + ++ ++    + G V +    F +M      P V+T   ++ G   
Sbjct: 176 NLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK 235

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            N  +    ++ EM   G+ PN+ TFN++   LCK+G   + +  L+ M + G  PD  T
Sbjct: 236 LNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVT 295

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL++ +C  GR++ A  L+  M   G
Sbjct: 296 YNTLINSYCRKGRLDDAFYLYKIMYRRG 323



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 112/305 (36%), Gaps = 94/305 (30%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  ++  M R    P  VS   +M G L K         LF R+   GL PD+ T++ 
Sbjct: 310 DDAFYLYKIMYRRGVVPDLVSYTALMNG-LCKEGRVREAHQLFHRMVHRGLSPDIVTYNT 368

Query: 77  LINCFCKMGRVSH-------------------------GFVVLGRILRS----------- 100
           LI+ +CK G++                           G+   G+ L +           
Sbjct: 369 LIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 428

Query: 101 -CFTPDVVTFTSLIKVC--------------------KPDAITYNTIIDGLCKQGFVDKA 139
              + D+ ++  ++ +C                    KP+   YN +I   C+   + +A
Sbjct: 429 VSISQDIYSYL-IVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEA 487

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L ++M DK +KPN+ TY +VI      +   E + L  EM+  G+ P++     +   
Sbjct: 488 LLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYG 547

Query: 200 LCKNGKMDEASSLL-----------------------------------DLMIQHGVRPD 224
            C+   +D+A SLL                                   D+M++ G+ P+
Sbjct: 548 YCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPN 607

Query: 225 AFTYN 229
             T N
Sbjct: 608 PLTCN 612


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 126/241 (52%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SF+ ++G  ++    D   +  + +   GL PD   ++++I  FC+ G +S    V
Sbjct: 295 PDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              ++     PDVVT+ +L+  +CK                    PD  T+ T+I G C+
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR 414

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG  + A +LF  +  + ++P+VVTY S+I G C   D  +A  L+ +M  + + PN +T
Sbjct: 415 QGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHIT 474

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++D  C+ G++++A   LD M++ G  P+  TYN+++ G+C +G V   ++    M 
Sbjct: 475 YSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMR 534

Query: 253 S 253
            
Sbjct: 535 Q 535



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 29/245 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L K++ +D    +F+ ++   + PD+ + +ILI  FC++G V      
Sbjct: 225 PGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKF 284

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +     TPDVV+F+ LI +                       PD + Y  +I G C+
Sbjct: 285 YKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCR 344

Query: 133 QGFVDKAKELFLKMKDKNVK----PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G + +A    L+++D+ V     P+VVTY +++ G C  +   +A++L  EM ++GV P
Sbjct: 345 AGSMSEA----LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTP 400

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ TF  ++   C+ G  + A  L D +++  +RPD  TYN+L+DG C  G +  A EL+
Sbjct: 401 DLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELW 460

Query: 249 VSMES 253
             M +
Sbjct: 461 DDMHA 465



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFNI++G   +       +  +K +    + PD+ + S LI  F + G + H    
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      PD V +T +I                       C PD +TYNT+++GLCK
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  +  A++L  +M+++ V P++ T+T++I G+C   ++  A +LF  ++ Q ++P+VVT
Sbjct: 380 QHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVT 439

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +N ++D +C+ G + +A+ L D M    + P+  TY+ L+D  C  G+V  A
Sbjct: 440 YNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDA 491



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + D M+      P V ++N +L  L K         L   +   G+ PDL T + 
Sbjct: 349 SEALRVRDEMVGF-GCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +C+ G   +   +   +LR    PDVVT+ SLI  +C+                  
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ ITY+ +ID  C++G V+ A     +M  K   PN+ TY S+I+G+C + +  + +
Sbjct: 468 ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQ 527

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +   +M    V P+++TFN ++    K   M  A ++ ++M +  VRPDA TYN +++GF
Sbjct: 528 QFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGF 587

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G +  A  +F  M   G
Sbjct: 588 SEQGNMQDAGRVFKGMGDSG 607



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 22/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA   F  +L  H  P P S+ N +L  L++          ++ + S+    + YT +
Sbjct: 103 PREAFEAFRLLLD-HRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLN 161

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           I+++ +CK         V+  + + C  PDVVT   LI                     +
Sbjct: 162 IMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR 221

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KP  +TYN+++ GLCK    DKAKE+F  M   +V P+V ++  +I GFC   +  EA
Sbjct: 222 GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            + + EM  + V P+VV+F+ ++    + G+MD A + L  M   G+ PD   Y  ++ G
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G ++ A  +   M   GC
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGC 363



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +FD +LR    P  V ++N ++  + +         L+  +++  + P+  T+SILI
Sbjct: 421 ALQLFDTLLRQRLRPD-VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILI 479

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           +  C+ G+V   F  L  +++    P++ T              YN+II G C+ G V K
Sbjct: 480 DSHCEKGQVEDAFGFLDEMVKKGNLPNIRT--------------YNSIIKGYCRSGNVKK 525

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
            ++   KM+  NV P+++T+ ++I G+    + + A  +F  M  + V+P+ VT+N+I++
Sbjct: 526 GQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIIN 585

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              + G M +A  +   M   G+ PD +TY +L++G    G    A +L   M   G
Sbjct: 586 GFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +FD + +    P  VS +N ++    +    D    L   ++++G+
Sbjct: 155 EGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMHASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT              T+I
Sbjct: 209 HPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFT--------------TLI 254

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK G+VD A E++ +M  +++ P++VTY ++I G C   D  +A  L  EM   G++
Sbjct: 255 DGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLK 314

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+ +T+  ++D  CK G +D A     +MIQ  +R D   Y  L+ G C  GR   A+++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 248 FVSMESMG 255
              M S+G
Sbjct: 375 LREMLSVG 382



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 23/243 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                         PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE-AKRLFIEMMD 183
            +I+GLCK+  +D A +LF +M +K + PN VT+T++I G C  N W + A  ++ +M+ 
Sbjct: 217 VLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHC-KNGWVDLAMEIYKQMLS 275

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           Q + P++VT+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ 
Sbjct: 276 QSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDT 335

Query: 244 AKE 246
           A E
Sbjct: 336 AFE 338



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 23/229 (10%)

Query: 29  MHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK G 
Sbjct: 203 MHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGW 262

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNT 125
           V     +  ++L     PD+VT+ +LI  +CK                    PD ITY T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTT 322

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E    M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++P+  T+ +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 383 LKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%)

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMHASG 207


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 32/261 (12%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ +F   +R     P V ++N ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 167 PKEAI-VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            L+  +   G +     +L  ++R+   P+   F+ L+                     +
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+A+TY T+ID LCK G V+ A   F +M D+ ++P+ + Y S+I   C  + W +A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + LF+EM+D+G+  + + FN I+D  CK G++ E+  L DLM++ GV+PD  T       
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT------- 398

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GR + AK+LFV+  S G
Sbjct: 399 ---LGRNDEAKDLFVAFSSNG 416



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 25/225 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTH 74
            +A  +FD +LR     P V S+NI+L  L         L L   +   G    PD+ ++
Sbjct: 34  EDARHVFDELLR--RGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +IN F K G        L ++L    +P+VVT              YN+II  LCK  
Sbjct: 92  STVINGFFKEGD-------LDKMLDQRISPNVVT--------------YNSIIAALCKAQ 130

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VDKA E+   M    V P+ +TY S++ GFC +    EA     +M   GV+P+VVT+N
Sbjct: 131 TVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYN 190

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +MD LCKNG+  EA  + D M + G++PD  TY TLL G+   G
Sbjct: 191 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKG 235



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 36/246 (14%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK +  +  + +F ++   GL P+  T+  +I+
Sbjct: 243 LLDLMVRNGIHPNH---YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPD------------------- 119
             CK GRV    +   +++     PD + + SLI  +C  D                   
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 120 -AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
             I +N+IID  CK+G V ++ +LF  M    VKP+++T           ND  EAK LF
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR--------ND--EAKDLF 409

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           +     G+ PN  T+ ++ + +   G ++E   L   M  +G   D+   N ++      
Sbjct: 410 VAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 469

Query: 239 GRVNHA 244
           G +  A
Sbjct: 470 GEITRA 475


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+    K K  D      + +   GL P+L T +++IN  C+ GR+     V
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L  + R  + PD VT+ +L+   CK                    P+ +TY ++I+ +CK
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A E F +M  + + PN  TYT++I GF      +EA R+  EM   G  P++VT
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N +++  C  G+M+EA  LL  M+  GV PD  +Y+T++ GF     ++ A ++ V M
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEM 254



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 133/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   M+R   SP  V ++  ++  + K  + +  +  F +++  GL P+  T++ 
Sbjct: 105 HQALVLHAEMVRNGLSPN-VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTT 163

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +IN F + G +   + VL  + RS F P +VT+ +LI                     K 
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+TII G  +   +D+A ++ ++M  K+V P+ VTY+S+I+G C      EA 
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEAC 283

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM+   + P+  T+  +++  CK G +++A  L D MIQ G  PDA TYN L++G 
Sbjct: 284 DMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL 343

Query: 236 CLTGRVNHAKELFVSM 251
               R   A+ L + +
Sbjct: 344 NKQARSKEARRLLLKL 359



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 21/221 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK- 114
           L  FK +   G  P++ T++ +I+ +CK+ R    F  L  +      P+++TF  +I  
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 115 VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           +C+                    PD +TYNT+++G CK+G   +A  L  +M    + PN
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VVTYTS+I   C A + N A   F +M  +G+ PN  T+  I++   + G +DEA  +L+
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN 182

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M + G  P   TYN L++G C+ GR+  A  L   M   G
Sbjct: 183 EMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  FD M  +    P   ++  ++   A+    D    +   +  +G  P + T++ 
Sbjct: 140 NRAMEFFDQM-HVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNA 198

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C +GR+     +L  ++     PDVV+++++I                     K 
Sbjct: 199 LINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKS 258

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA+TY+++I GLC+Q  + +A ++F +M    + P+  TYT++I  +C   D N+A 
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
            L  EM+ +G  P+ VT+NV+++ L K  +  EA  LL  +      P A TYNTL++  
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENC 378

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G ++ A ++F SM
Sbjct: 379 CNIEFKSAVALVKGFCMKGLMDEADQVFESM 409



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 36/216 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++ ++  L + +       +F+ + +  L PD +T++ LIN +CK G ++    +
Sbjct: 261 PDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHL 320

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIID---- 128
              +++  F PD VT+  LI                         P A+TYNT+I+    
Sbjct: 321 HDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCN 380

Query: 129 -----------GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C +G +D+A ++F  M +KN KPN   Y  +I G C   +  +A +L
Sbjct: 381 IEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + EM+     P+ VT   ++  L   G   E + ++
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVI 476


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 22/252 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ++   P P  ++  N++ G L KN  +        ++ + GL PD YT++ LI  +CK G
Sbjct: 277 LIEQGPKPDVITYNNLIYG-LCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            V     ++G  + + F PD  T+ SLI                     K  KP+ I YN
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+I GL  QG + +A +L  +M +K + P V T+  ++ G C     ++A  L   M+ +
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P++ TFN+++       KM+ A  +LD+M+ +GV PD +TYN+LL+G C T +    
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515

Query: 245 KELFVSMESMGC 256
            E + +M   GC
Sbjct: 516 METYKTMVEKGC 527



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +F+  L      P V  +N ++  L+          L   ++  GL P++ T +I
Sbjct: 373 NRALALFNEALG-KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N  CKMG VS    ++  ++   + PD+ TF              N +I G   Q  +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF--------------NILIHGYSTQLKM 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A E+   M D  V P+V TY S++ G C  + + +    +  M+++G  PN+ TFN++
Sbjct: 478 ENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           ++ LC+  K+DEA  LL+ M    V PDA T+ TL+DGFC  G ++ A  LF  ME 
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 22/252 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M   +   P V S+N ++  L  + ++D    ++ R+   G+ PD+Y+ +I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI--------------- 121
            +  FCK  R      +L  +       +VV + +++     +                 
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 T+N ++  LCK+G V + ++L  K+  + V PN+ TY   I+G C   + + A 
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+   +++QG +P+V+T+N ++  LCKN K  EA   L  M+  G+ PD++TYNTL+ G+
Sbjct: 272 RMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331

Query: 236 CLTGRVNHAKEL 247
           C  G V  A+ +
Sbjct: 332 CKGGMVQLAERI 343



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 16/248 (6%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  T +    AL I D ML  +   P V ++N +L  L K   ++ V+  +K +   G  
Sbjct: 470 GYSTQLKMENALEILDVMLD-NGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+L+T +IL+   C+  ++     +L  +                K   PDA+T+ T+ID
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKN--------------KSVNPDAVTFGTLID 574

Query: 129 GLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CK G +D A  LF KM++   V  +  TY  +I  F    +   A++LF EM+D+ + 
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  T+ +++D  CK G ++     L  M+++G  P   T   +++  C+  RV  A  +
Sbjct: 635 PDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGI 694

Query: 248 FVSMESMG 255
              M   G
Sbjct: 695 IHRMVQKG 702



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLFI 179
           TY ++I+ L   G  +  +E+ + M++ NV  +++   Y   ++ +       EA  +F 
Sbjct: 42  TYRSVIEKLGYYGKFEAMEEVLVDMRE-NVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFE 100

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M     +P V ++N IM  L  +G  D+A  +   M   G+ PD +++   +  FC T 
Sbjct: 101 RMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTS 160

Query: 240 RVNHAKELFVSMESMGC 256
           R + A  L  +M S GC
Sbjct: 161 RPHAALRLLNNMSSQGC 177



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G V +A  +F +M   + +P V +Y +++     +  +++A ++++ M D+G+ P+V 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +F + M   CK  +   A  LL+ M   G   +   Y T++ GF          ELF  M
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207

Query: 252 ESMG 255
            + G
Sbjct: 208 LASG 211


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP    FN+++    K     +   +F  +   GL P + + + LI+  CK G V  GF 
Sbjct: 139 PPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           + G +      PDV TF++LI  +CK                    P+ +T+  +IDG C
Sbjct: 199 LKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A + F  M  + V+P++VTY ++I G C   D  EA+RL  EM   G++P+ +
Sbjct: 259 KGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF  ++D  CK G M+ A  +   M++ G+  D   +  L+ G C  GRV+ A+ +   M
Sbjct: 319 TFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDM 378

Query: 252 ESMG 255
            S G
Sbjct: 379 LSAG 382



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + S  + PD++T S LIN  CK GR+  G ++
Sbjct: 175 PTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLL 234

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ VTFT LI                     +  +PD +TYN +I+GLCK
Sbjct: 235 FDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 294

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+ L  +M    ++P+ +T+T++I G C   D   A  +   M+++G++ + V 
Sbjct: 295 VGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVA 354

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F V++  LC++G++ +A  +L  M+  G +PD  TY  ++D FC  G V    +L   M+
Sbjct: 355 FTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQ 414

Query: 253 SMG 255
           S G
Sbjct: 415 SDG 417



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   +FD M      P  V+ F +++    K    D  L  F+ + + G+ PDL T++ 
Sbjct: 229 DEGSLLFDEMCGKGLVPNGVT-FTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 287

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LIN  CK+G +     ++  +  S   PD +TFT+LI  C                    
Sbjct: 288 LINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEG 347

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D + +  +I GLC+ G V  A+ +   M     KP+  TYT V+  FC   +     
Sbjct: 348 IELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGF 407

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM   G  P VVT+N +M+ LCK G++  A  LLD M+  GV P+  TYN LL+G 
Sbjct: 408 KLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGH 467

Query: 236 CLTG 239
              G
Sbjct: 468 SKHG 471



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 14/191 (7%)

Query: 65  TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
           +G  P+ +  ++L++ FCK+G V    +V   I +    P VV+F              N
Sbjct: 136 SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSF--------------N 181

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+I G CK G V++   L   M+ + V P+V T++++I G C     +E   LF EM  +
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PN VTF V++D  CK GK+D A     +M+  GVRPD  TYN L++G C  G +  A
Sbjct: 242 GLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 301

Query: 245 KELFVSMESMG 255
           + L   M + G
Sbjct: 302 RRLVNEMSASG 312



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++  L K    D    LF  +   GL P+  T ++LI+  CK G+V      
Sbjct: 210 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKN 269

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD+VT+ +LI  +CK                    PD IT+ T+IDG CK
Sbjct: 270 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A E+  +M ++ ++ + V +T +I G C     ++A+R+  +M+  G +P+  T
Sbjct: 330 YGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CK G +     LL  M   G  P   TYN L++G C  G+V +AK L  +M 
Sbjct: 390 YTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAML 449

Query: 253 SMG 255
           ++G
Sbjct: 450 NVG 452



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 31/239 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  F  ML     P  V+ +N ++  L K         L   ++++GL PD  T + LI
Sbjct: 266 ALKNFQMMLAQGVRPDLVT-YNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLI 324

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------K 117
           +  CK G +     +  R++      D V FT LI  +C                    K
Sbjct: 325 DGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFK 384

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TY  ++D  CK+G V    +L  +M+     P VVTY +++ G C       AK L
Sbjct: 385 PDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKML 444

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI---QHGVRPDAFTYNTLLD 233
              M++ GV PN +T+N++++   K+G      S +D+ I   + G+  D  +Y  L++
Sbjct: 445 LDAMLNVGVAPNDITYNILLEGHSKHG------SSVDVDIFNSEKGLVKDYASYTALVN 497


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 27/212 (12%)

Query: 55  VLSLFKRLN------STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
            + LFKR++      +    P +YT++ILI+C+ +M R      V GR+LR+   PDV +
Sbjct: 100 AVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCS 159

Query: 109 FTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           + +LI                     +   PD +TYN++IDGLCK   + K++ +  +M 
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMV 219

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           D  ++PN  TY S+I G+  A  W E+ R+F EM   G+ P VV  N  +  LC++ ++ 
Sbjct: 220 DAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIK 279

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EA  + D M+  G +P+  +Y+TLL G+   G
Sbjct: 280 EAKDIFDSMVLKGPKPNIISYSTLLHGYAAEG 311



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 17/219 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++   A+    D  + +F+ + + G+ PD  T + +I+  C++GR+           
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDA-------- 386

Query: 99  RSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                  +  F  ++ +   P    Y  +I G C  G + KAKEL  +M +K++ P  V 
Sbjct: 387 -------LHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK 439

Query: 158 Y-TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           Y +S+I          E K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M
Sbjct: 440 YFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 499

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              G+ P+ + Y TL+DG+C  GR++ A  +F  M   G
Sbjct: 500 ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG 538



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 384 DDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 443

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN   K GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 444 IINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 503

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y  ++ G   A     AK
Sbjct: 504 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAK 563

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 564 KMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 623

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 624 LKVGRRQEAKELFAAISTYG 643



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++ C  +    +  L++F RL  TGL PD+ +++ LI+ F K G V   + +
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG--- 129
             +++    +PDVVT+ SLI  +CK                    P+  TYN++I G   
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 130 --------------------------------LCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                           LC+   + +AK++F  M  K  KPN+++
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y++++ G+     +     L   M+ +G+ PN   FN++++   + G MD+A  + + M 
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  T+ T++   C  GR++ A   F  M  +G
Sbjct: 360 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 397



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 17/235 (7%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           I D M++    P  V+  ++M G CL  N   +   +L   + S G+ P+ Y +  L++ 
Sbjct: 460 IMDLMVQTGQRPNVVTFNSLMEGYCLVGN--MEEAFALLDAMASIGIEPNCYIYGTLVDG 517

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           +CK GR+     V   +L               K  KP ++ YN I+ GL +      AK
Sbjct: 518 YCKNGRIDDALTVFRDMLH--------------KGVKPTSVLYNIILHGLFQARRTTAAK 563

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F +M +     ++ TY  V+ G C  N  +EA  L  ++    V+ +++TFN+++  +
Sbjct: 564 KMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 623

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K G+  EA  L   +  +G+ P   TYN ++           A  LF+S+E  G
Sbjct: 624 LKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSG 678



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 139/367 (37%), Gaps = 128/367 (34%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL +F  +LR    P  V S+N ++   +K    D    LF ++    + PD+ T++
Sbjct: 138 PELALAVFGRLLRTGLGPD-VCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYN 196

Query: 76  ILINCFCKMGRVS-------------------------HGFVVLG------RILR----S 100
            LI+  CK   +                          +G+   G      R+ +    S
Sbjct: 197 SLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSS 256

Query: 101 CFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ------ 133
              P VV   S I                     K  KP+ I+Y+T++ G   +      
Sbjct: 257 GLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANM 316

Query: 134 -----------------------------GFVDKAKELFLKMKDKNVKPNVVTYTSV--- 161
                                        G +DKA  +F  M++K + P+ VT+ +V   
Sbjct: 317 NSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 376

Query: 162 --------------------------------IRGFCYANDWNEAKRLFIEMMDQGV-QP 188
                                           I+G C   +  +AK L  EMM++ +  P
Sbjct: 377 LCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPP 436

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            V  F+ I++ L K G++ E   ++DLM+Q G RP+  T+N+L++G+CL G +  A  L 
Sbjct: 437 GVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL 496

Query: 249 VSMESMG 255
            +M S+G
Sbjct: 497 DAMASIG 503



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  +NI+L  L + +       +F  +  +G    + T+ +
Sbjct: 525 DDALTVFRDMLHKGVKPTSVL-YNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGV 583

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 584 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMLKVGRR 629

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + P V TY  +I        + EA  LFI +   G  P+    N I
Sbjct: 630 QEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHI 689

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  L K  ++ +AS+ L ++ ++ +  +A T + L   F   G+
Sbjct: 690 VRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGK 733


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 31/278 (11%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ER  S+G+       P+ A+  F  M   H     + SFN +L  L K+K  +T  SL K
Sbjct: 147 ERYASNGK-------PHRAVRTFLSMAE-HGIRQDLHSFNTLLDILCKSKRVETAHSLLK 198

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
            L S    PD  T++IL N +C + R      VL  +++    P +VT+ +++K      
Sbjct: 199 TLTSR-FRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSN 257

Query: 115 ---------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                           C+ D +TY T+I G    G V KAK +F +M  + V PNV TY 
Sbjct: 258 QIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYN 317

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           ++I+  C  +    A  +F EM  +GV  PNVVT+NV++  LC  G M+ A   ++ M +
Sbjct: 318 ALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGE 377

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           HG+R    TYN ++  FC  G V  A E+F  M    C
Sbjct: 378 HGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSC 415



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 130/263 (49%), Gaps = 31/263 (11%)

Query: 17  NEALCIFDYM--LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           N A  +   M  LR+ PSP    +  I+    A N      +  F  +   G+  DL++ 
Sbjct: 121 NSAWALVGRMRSLRLGPSP---KTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSF 177

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------------IKVCK---- 117
           + L++  CK  RV     +L + L S F PD VT+  L             ++V K    
Sbjct: 178 NTLLDILCKSKRVETAHSLL-KTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQ 236

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P  +TYNT++ G  +   + +A E +L+MK +  + +VVTYT+VI GF  A D  +
Sbjct: 237 RGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKK 296

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLL 232
           AKR+F EM+ +GV PNV T+N ++  LCK   ++ A  + + M + GV  P+  TYN ++
Sbjct: 297 AKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVI 356

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G C  G +  A      ME MG
Sbjct: 357 RGLCHVGDMERALGF---MERMG 376



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 16/194 (8%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           +F  +   G+ P++ T++ LI   CK   V +  VV   + R               VC 
Sbjct: 300 VFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREG-------------VCV 346

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TYN +I GLC  G +++A     +M +  ++  V TY  VIR FC A +  +A  +
Sbjct: 347 PNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEV 406

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDE---ASSLLDLMIQHGVRPDAFTYNTLLDG 234
           F +M D    PN+ T+NV++  +    K ++   A  LL  M+  G  P  FT+N +L+G
Sbjct: 407 FGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNG 466

Query: 235 FCLTGRVNHAKELF 248
             +TG  + AKE+ 
Sbjct: 467 LVITGNQDFAKEIL 480



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHSILINCFCKMGRVSHGFV 92
           P V+++N ++  L K    +  + +F+ +   G+  P++ T++++I   C +G +     
Sbjct: 311 PNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALG 370

Query: 93  VLGRI----LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
            + R+    LR+C                    TYN +I   C  G V+KA E+F KM D
Sbjct: 371 FMERMGEHGLRACVQ------------------TYNVVIRYFCDAGEVEKALEVFGKMGD 412

Query: 149 KNVKPNVVTYTSVIRGFCY---ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
            +  PN+ TY  +I        + D   A +L ++M+D+G  P   TFN +++ L   G 
Sbjct: 413 GSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGN 472

Query: 206 MDEASSLLDLMIQHG 220
            D A  +L +  + G
Sbjct: 473 QDFAKEILRMQSRCG 487



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +++  +D   +    + A  L  +M+   + P+  T   +   +      + A R F+ M
Sbjct: 106 SFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSM 165

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            + G++ ++ +FN ++D LCK+ +++ A SLL  +     RPD  TYN L +G+CL  R 
Sbjct: 166 AEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSR-FRPDTVTYNILANGYCLIKRT 224

Query: 242 NHAKELFVSMESMG 255
             A  +   M   G
Sbjct: 225 PMALRVLKEMVQRG 238


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 21/212 (9%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L K+ ++    +LF  ++  G+FP++ T++ +I+ FC  GR S    +L  ++     PD
Sbjct: 20  LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPD 79

Query: 106 VVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVDKAKELFL 144
           +VTF++LI       KV +              P  ITYN++IDG CKQ  VD AK +  
Sbjct: 80  IVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLD 139

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            M  K   P+VVT++++I G+C A   +    +F EM  +G+  N VT+  ++   C+ G
Sbjct: 140 SMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVG 199

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            +D A  LL+ MI  GV PD  T++ +L G C
Sbjct: 200 DLDAAQDLLNEMISCGVAPDYITFHCMLAGLC 231



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 84/140 (60%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D +    I+D LCK G    A+ LF +M +K + PNV+TY  +I  FC++  W++A +
Sbjct: 7   KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQ 66

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M+++ + P++VTF+ +++   K  K+ EA  +   M++  + P   TYN+++DGFC
Sbjct: 67  LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFC 126

Query: 237 LTGRVNHAKELFVSMESMGC 256
              RV+ AK +  SM S GC
Sbjct: 127 KQDRVDDAKRMLDSMASKGC 146



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 21/202 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+     +  +     L + +    + PD+ T S LIN F K  +VS    +
Sbjct: 43  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 102

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +LR    P  +T+ S+I                     K C PD +T++T+I+G CK
Sbjct: 103 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 162

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD   E+F +M  + +  N VTYT++I GFC   D + A+ L  EM+  GV P+ +T
Sbjct: 163 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYIT 222

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
           F+ ++  LC   ++ +A ++L+
Sbjct: 223 FHCMLAGLCSKKELRKAFAILE 244



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TYN +ID  C  G    A +L   M +K + P++VT++++I  F      +EA+ +
Sbjct: 43  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 102

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           + EM+   + P  +T+N ++D  CK  ++D+A  +LD M   G  PD  T++TL++G+C 
Sbjct: 103 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 162

Query: 238 TGRVNHAKELFVSMESMG 255
             RV++  E+F  M   G
Sbjct: 163 AKRVDNGMEIFCEMHRRG 180


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 23/244 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL + ++M +    P     +NI+L  L K+      L L   + +T   PD+YT++IL
Sbjct: 22  QALALLEHM-KNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNIL 80

Query: 78  INCFCKMGRV--SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG- 134
           IN  CK+GR+  + G V + +                 + C  D +TYNT+I GLC++G 
Sbjct: 81  INALCKVGRLEDAQGLVEMMQ----------------ARDCPTDIVTYNTLIHGLCRKGN 124

Query: 135 ---FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
               V++A  LF +M DK   P  VTYT VI          +A+++   M + G   ++V
Sbjct: 125 GRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLV 184

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N++++   K G MD+A  L   M   G  PD  TYN+++DGFC  G+V  A +LF  M
Sbjct: 185 TYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEM 244

Query: 252 ESMG 255
           ++ G
Sbjct: 245 KARG 248



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 20/207 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            L+L + + +  +  +   ++I++   CK G+      +L  +  +              
Sbjct: 23  ALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTS------------- 69

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW--- 171
            C PD  TYN +I+ LCK G ++ A+ L   M+ ++   ++VTY ++I G C   +    
Sbjct: 70  -CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFR 128

Query: 172 -NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASSLLDLMIQHGVRPDAFTYN 229
              A RLF EM+D+G  P  VT+ V++D L +  KMDE A  +LDLM ++G   D  TYN
Sbjct: 129 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRV-KMDEQAQKVLDLMHENGCAFDLVTYN 187

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
            L++ F   G ++ A +LFV M + GC
Sbjct: 188 MLINRFAKAGMMDKAMDLFVEMPTRGC 214



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + +A TY+TI+ G C+ G   +A  L   MK+  V  N   Y  ++   C      EA  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M      P++ T+N++++ LCK G++++A  L+++M       D  TYNTL+ G C
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLC 120

Query: 237 LTG----RVNHAKELFVSMESMG 255
             G    RV  A  LF  M   G
Sbjct: 121 RKGNGRFRVERAFRLFEEMVDKG 143



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%)

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           + N  TY++++RG+C   +  +A  L   M +  V  N   +N+I+  LCK+GK  EA  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           LL  M      PD +TYN L++  C  GR+  A+ L   M++  C
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDC 105


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 23/263 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+  ++     P   SFN+++  + +  ++   L L +R+   G  PD  TH+I
Sbjct: 199 QDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNI 258

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCF-TPDVVTFTSLIK-VCK----------------- 117
           L++  C+  +V+ G  +L R+ R     P+VVT+TS+I   CK                 
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+ +TYN +I+G  K   ++ A  ++ ++  +   P+VVT++S+I G+C     ++A
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDA 378

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
            R++ EM    +QPNV TF++I+  LCK  +  EA   L +L ++  + P  F YN ++D
Sbjct: 379 MRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVID 438

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
             C  G+V  A  +   ME  GC
Sbjct: 439 ILCKGGQVEEANLIVTDMEEKGC 461



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 132/263 (50%), Gaps = 24/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHS 75
            +AL + + M     SP  ++  NI++  L + K  +    L +RL   G+  P++ T++
Sbjct: 235 QKALELVERMTEFGCSPDTIT-HNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYT 293

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            +I+ +CK GR+     V   +L S   P+ VT+  LI                     +
Sbjct: 294 SVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR 353

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PD +T++++IDG C+ G +D A  ++ +M   +++PNV T++ +I   C  N   EA
Sbjct: 354 RCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEA 413

Query: 175 KRLFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
                E+ M   + P    +N ++D LCK G+++EA+ ++  M + G  PD +TY  L+ 
Sbjct: 414 LGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILII 473

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C+ GR+  A  LF  M   GC
Sbjct: 474 GHCMKGRIPEAITLFHKMVETGC 496



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 23/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +FD M       P    F+ + G        D  ++L  + +  G   + Y ++ L
Sbjct: 129 DALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNL 188

Query: 78  INCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLIKV--------------------- 115
           +N     GR      +    ++   ++PD  +F  +IK                      
Sbjct: 189 LNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFG 248

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEA 174
           C PD IT+N ++DGLC+   V++  +L  +++   V  PNVVTYTSVI G+C A    +A
Sbjct: 249 CSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDA 308

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             ++ +M++ G +PN VT+NV+++   K   M+ A  +   +I     PD  T+++L+DG
Sbjct: 309 LSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDG 368

Query: 235 FCLTGRVNHAKELFVSM 251
           +C  G+++ A  ++  M
Sbjct: 369 YCRCGQLDDAMRIWKEM 385



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 23/226 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +++ ML     P  V+ +N+++    K    ++ + ++++L      PD+ T S 
Sbjct: 306 EDALSVYNDMLESGTRPNTVT-YNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSS 364

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------ 117
           LI+ +C+ G++     +   + +    P+V TF+ +I  +CK                  
Sbjct: 365 LIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRA 424

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P    YN +ID LCK G V++A  +   M++K   P+  TYT +I G C      EA
Sbjct: 425 DIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEA 484

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
             LF +M++ G +P+ +T N  +  + K G  +E   ++ +   H 
Sbjct: 485 ITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIMLIASGHA 530



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKR 176
           P   +Y+ +I  LC+ G    A +LF +M D++   P+ V ++ V      A   + A  
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVT 168

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGF 235
           L  +    G +     +N +++ L   G+  +A +L +  IQ G+  PD +++N ++ G 
Sbjct: 169 LLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGV 228

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G    A EL   M   GC
Sbjct: 229 CRVGNFQKALELVERMTEFGC 249



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDE 208
           +V P+  +Y+ VI   C +    +A +LF +M DQ G  P+ V F+ +       G +D 
Sbjct: 106 SVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDA 165

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           A +LL    Q G R + + YN LL+     GR   A  LF S
Sbjct: 166 AVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFES 207


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N +L  L K   +D +  L+  + S  LFP + T+++L++  C+ G V     +
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +++    P VV +T+LI  +C                     P+  TYN ++DG CK
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCK 268

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              V +A  L+  M D  ++PNVVT+  +I   C   +   A+R F++M   GV PNVV 
Sbjct: 269 TANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVV 328

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D   K G   EA+ LL  M +  + PD FTY+ L+   C  G V  A ++   ME
Sbjct: 329 FNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRME 388

Query: 253 SMG 255
             G
Sbjct: 389 KEG 391



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 28/229 (12%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   T    +AL ++  ML      P V +F I++  L K +        F ++   G+
Sbjct: 264 DGYCKTANVKQALHLYQGMLD-DGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGV 322

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            P++   + LI+ + K G  S    +L  + +   +PDV T++ LIK  C+         
Sbjct: 323 VPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADD 382

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLK------MKDKNVKPNVVTYTS 160
                       +++ YN++IDG CK+G ++KA E+F        M+   ++P+ + Y  
Sbjct: 383 ILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAV 442

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           +++G   A    +   L  +M+  G+ PN VT  V+      NG +  A
Sbjct: 443 MLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSA 491



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 36/243 (14%)

Query: 16  PNEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           P  +L + +  +R   S  PP     I+L      +  DT  S+ K+ N       L+ +
Sbjct: 7   PKHSLKLVETKIRFFTSLSPPSDLTTIILHSKTPEQALDTFTSVLKQ-NPNNPTKKLHLY 65

Query: 75  SILINCFCKMGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           S +I+           ++   ++  +  C T D++   +L++ C P  +  N+++     
Sbjct: 66  SAVIH-----------YLTGAKVYPTARCLTKDLIQ--TLLQSCTPRRV--NSLVFNALS 110

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q            ++     P+V  +  +I  F      +EA R+++++   G  P V  
Sbjct: 111 Q------------LRGSKFNPSV--FGVLIIAFSEVGLVDEALRVYLKV---GAFPAVQA 153

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N +++ L K    D    L + M+   + P   TYN L+D  C  G V  AK L   M 
Sbjct: 154 CNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMV 213

Query: 253 SMG 255
             G
Sbjct: 214 KKG 216


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PD  T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM+ +G++P+ +
Sbjct: 259 KKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++  M+ Q
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A+ L+D M+  G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+ +TYT++I G C
Sbjct: 269 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V     L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSRLLKEMQRNG 417



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 139/320 (43%), Gaps = 93/320 (29%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R     P V +FN ++  + + +  D V  L+K ++  G+ PD+YT+  LI  F
Sbjct: 208 VFDEMRRS--VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGF 265

Query: 82  CKMGRVSHGFVVLGRILRS-------CFT----------------------------PDV 106
           C+ GR+ +   +   +  +        FT                            PD+
Sbjct: 266 CRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDL 325

Query: 107 VTFTSLIK-VC--------------------KPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           V + +L+  +C                    KPD +TY T+IDG CK G +D A ++  K
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQK 385

Query: 146 MKDKNV-----------------------------------KPNVVTYTSVIRGFCYAND 170
           M +K V                                   +P+  TYT VI  FC   D
Sbjct: 386 MAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGD 445

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
                +L  EM ++G +P VVT+NVIM+ LCK G+M  A  LL  M+  GV PD  TYN 
Sbjct: 446 VKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNI 505

Query: 231 LLDGFCLTGRVNHAKELFVS 250
           LLDG C  G+V +++EL  S
Sbjct: 506 LLDGQCKHGKVANSEELESS 525



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 27/240 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P PV S     G +++        + + +L   G+ P+    ++L+  F ++G +     
Sbjct: 153 PAPVCS-----GLMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARK 207

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLC 131
           V   + RS   P VVTF +LI  +C                    KPD  TY  +I G C
Sbjct: 208 VFDEMRRS-VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFC 266

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G ++ A ++F +M+D  V PN V +T++I   C   + N    L+ +M  +GV P++V
Sbjct: 267 RTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLV 326

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N +++ LC+   +  A S+++ M   G++PD  TY TL+DG C  G+++ A ++   M
Sbjct: 327 AYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKM 386


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 21/215 (9%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK 117
           F  L  + L PD+  ++I+I+ + K+G V     +  R+     TP +VTF SLI   CK
Sbjct: 419 FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCK 478

Query: 118 --------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               P A+TY T+++  C++G ++K  EL L+M  K+++P VVT
Sbjct: 479 NRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVT 538

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT VI+G C      E+ +L  +M  +G+ P+ +T+N I+   CK   M +A  LLD M+
Sbjct: 539 YTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDML 598

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            H + P   TYN L+DG C  G V  A  + VS++
Sbjct: 599 IHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQ 633



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 14/213 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++++L  L K    D  L L   + +  L PDL T+SILI+  CK G+V     +   + 
Sbjct: 329 YSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEM- 387

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
             CF               P++  ++ I+ GLC++G +  A+  F  +   N++P+V  Y
Sbjct: 388 --CFNR-----------IFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLY 434

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             +I G+    D  EA RL+  + D+ + P++VTFN ++   CKN K+ EA  LL+ +  
Sbjct: 435 NIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKL 494

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           HG+ P A TY TL++ +C  G +N   EL + M
Sbjct: 495 HGLEPSAVTYTTLMNAYCEEGNINKLHELLLEM 527



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 15/220 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V SFN ++    K    D   S F  +   G+ PD Y+++ILI          HG +
Sbjct: 182 APSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILI----------HGLI 231

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNV 151
           V G +  +    + +    L    +PD +TY  +  G    G +  A+E+  KM  D+ +
Sbjct: 232 VAGSMEEALELTNDMEKQGL----QPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGL 287

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP++VTYT +I G C   +  EA RL  +++  G Q NV+ ++V++  LCK G++DEA  
Sbjct: 288 KPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQ 347

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LL  M  + ++PD  TY+ L+ G C  G+V  A +L+  M
Sbjct: 348 LLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEM 387



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V ++ +++  L K +  +  + L + + + GL PD  T++ +I CFCK   +   F 
Sbjct: 533 EPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFE 592

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +L              I   +P   TYN +IDGLC+ G V+ A  + + ++D+N+ 
Sbjct: 593 LLDDML--------------IHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNIN 638

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
              V YT++I+  C   D   A ++F +M+++G + ++  ++ +++ LCK   ++EA   
Sbjct: 639 LTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYY 698

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +M+  GV PD   +  +L+ F   G V+   EL   M   G
Sbjct: 699 FCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFG 741



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A   FD ++ M    P V+ +NIM+    K    +  + L+KRL    + P + T + 
Sbjct: 413 SDARMYFDSLI-MSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNS 471

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------------------IKV 115
           LI  FCK  +V     +L  I      P  VT+T+L                     +K 
Sbjct: 472 LIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD 531

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P  +TY  +I GLCKQ  ++++ +L   M+ K + P+ +TY ++I+ FC A D  +A 
Sbjct: 532 IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAF 591

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M+   ++P   T+NV++D LC+ G +++A  +L  +    +      Y T++   
Sbjct: 592 ELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAH 651

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G    A ++F  M   G
Sbjct: 652 CVKGDAQRAVKVFHQMVEKG 671



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 22/237 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI++  L      +  L L   +   GL PD+ T+ I+   F  +G +S    +
Sbjct: 218 PDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREI 277

Query: 94  LGRILR-SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           + ++L      PD+VT+T LI                        + + I Y+ ++  LC
Sbjct: 278 IQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLC 337

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G VD+A +L  +M+  N++P++VTY+ +I G C      +A +L+ EM    + PN  
Sbjct: 338 KRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSF 397

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             + I+  LC+ G + +A    D +I   +RPD   YN ++DG+   G V  A  L+
Sbjct: 398 AHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLY 454



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 25/242 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L  L   +H D +  ++  +  +G      T SI+++  C   R     + 
Sbjct: 116 PSIQTYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLF 172

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L +     F P VV+F +++ + CK                    PD  +YN +I GL  
Sbjct: 173 LRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIV 232

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVV 191
            G +++A EL   M+ + ++P++VTY  V +GF      + A+ +  +M+ D+G++P++V
Sbjct: 233 AGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLV 292

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ V++   C+ G ++EA  L   ++  G + +   Y+ LL   C  G+V+ A +L   M
Sbjct: 293 TYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEM 352

Query: 252 ES 253
           E+
Sbjct: 353 EA 354



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P   TYN+++  L      D   +++  +KD     +  T + ++ G C  + + +A  
Sbjct: 115 RPSIQTYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAV- 170

Query: 177 LFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           LF+   D +   P+VV+FN IM   CK G  D A S   +M+++G+ PD ++YN L+ G 
Sbjct: 171 LFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGL 230

Query: 236 CLTGRVNHAKELFVSMESMG 255
            + G +  A EL   ME  G
Sbjct: 231 IVAGSMEEALELTNDMEKQG 250


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F +++    KN +    + +F+ +   G+   + T++ LI+  C  G+V  G  +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +     +P+ +TF  ++K  CK                    PD + Y  +IDG  +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRR 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  +   M  K + PNV TY  +I GF  + DW  A  L  EM ++G++ +VVT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++  LC  G++ +A  LLD M + G+ P+  TYNT++ GFC  G +  A E+   ME
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME 501



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 30  HPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           HP   P  SS N +L  L   K  D     F+      + PD+YT + +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------------PDAITYN 124
               V   I      P V T+ SLI   CK                       P A+T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+G CK      A  +F +MK + +  +VVTY S+I G C      E  +L  EM D 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PN +TF  ++   CK G M +A+  +D M +  V PD   Y  L+DG+   G++  A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDA 388

Query: 245 KELFVSMESMG 255
             +  +M   G
Sbjct: 389 MAVKEAMAKKG 399



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 37/263 (14%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   LR   SP  + +FN ++  L +         + K + + GL P + T++ LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 83  K---MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------P 118
           K    G + H  ++L  ++ +  +P  VTF  LI   CK                     
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY------ANDWN 172
             +TYN++I GLC +G V++  +L  +M+D  + PN +T+  V++GFC       ANDW 
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWI 357

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +       M ++ V+P+VV + +++D   + GKM++A ++ + M + G+ P+  TYN L+
Sbjct: 358 DG------MTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF  +G    A  L   M+  G
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKG 434



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 21/206 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD+  ++ILI+ + ++G++     V   + +   +P+V T+  LI               
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K  + D +TYN +I  LC +G V KA +L  +M +  ++PN +TY ++I+GFC 
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +   A  +   M     + NVVT+NV +   C+ GKMDEA+ LL+ M+   + P+  T
Sbjct: 487 KGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMES 253
           Y T+ +G    G     +   VS  S
Sbjct: 547 YETIKEGMMEKGYTPDIRGCTVSQAS 572



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 30/155 (19%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N+++G L         + L   ++  GL P+  T++ +I  FC  G +   + +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R +  C               + + +TYN  I   C+ G +D+A +L  +M DK + PN 
Sbjct: 499 R-MEKCRK-------------RANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           +TY ++  G                MM++G  P++
Sbjct: 545 ITYETIKEG----------------MMEKGYTPDI 563


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 17/226 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L   P  P V SFN  L  L + + +D    L  ++          T +ILI+  C+ G
Sbjct: 406 LLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNG 465

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           RV++   V  ++ +   TPD+VT++SL              I+GL +QG V+ A ELF  
Sbjct: 466 RVNNAIEVFEQMPKYGCTPDIVTYSSL--------------INGLSEQGLVESAIELFQS 511

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M     KP++  Y +V++G C A  W +A  L   M  +   PN +TFN++++ LC+ G 
Sbjct: 512 MP---CKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGL 568

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D A  + + M ++G  PD FTYN L++GF   GR++ A+ L  +M
Sbjct: 569 VDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM 614



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 17/221 (7%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++N +L  L   + ++   +L   +      P+  T +  I  FC+ G +   
Sbjct: 207 PVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRA 266

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L R+ +   TPDVV               Y+T+++G  +QG VD A EL   M    
Sbjct: 267 VQLLDRMPQYGCTPDVVI--------------YSTLVNGFSEQGRVDDAIELLNGML--- 309

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            KPN + Y + ++G C A  W +  +L +EM+ +   PN  TF+++   LC+NG +D A 
Sbjct: 310 CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAM 369

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +L+ M ++G RPDA  YNTL+  F   GRV+ A +L  SM
Sbjct: 370 EVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM 410



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 27/243 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F+++  CL +N   D  + + ++++  G  PD   ++ LI  F + GRV     +
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCK 132
           L  +   C +PDV++F + +K +C+ +                     +T+N +ID LC+
Sbjct: 407 LNSM--PC-SPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQ 463

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+ A E+F +M      P++VTY+S+I G         A  LF  M     +P++  
Sbjct: 464 NGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM---PCKPDIFG 520

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  + ++A  L+  M +    P+  T+N L++  C  G V+ A E+F  M 
Sbjct: 521 YNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMP 580

Query: 253 SMG 255
             G
Sbjct: 581 KYG 583



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 130/324 (40%), Gaps = 89/324 (27%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +   M+R H  PP   +F   +    +N   D  + L  R+   G  PD+  +S L
Sbjct: 230 DAEALMAEMVRNH-CPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTL 288

Query: 78  INCFCKMGRVSHGFVVLGRIL--------------------------------RSCFTPD 105
           +N F + GRV     +L  +L                                R    P+
Sbjct: 289 VNGFSEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPN 348

Query: 106 VVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFL 144
             TF+ L                        C+PDA+ YNT+I    +QG VD A +L  
Sbjct: 349 EATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLN 408

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            M      P+V+++ + ++G C A  W++A+ L ++M+ +      +TFN+++D LC+NG
Sbjct: 409 SMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNG 465

Query: 205 KMDEA-------------------SSLLDLMIQHGV-------------RPDAFTYNTLL 232
           +++ A                   SSL++ + + G+             +PD F YN +L
Sbjct: 466 RVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCKPDIFGYNAVL 525

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C   R   A EL  +M    C
Sbjct: 526 KGLCRAARWEDAGELISNMARKDC 549



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 19/216 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NI++  L   +       +   L + G   D  +H+ L+  +C+ GR++       
Sbjct: 112 VVACNILIKKLCAQRRLADAERVLDALKAAGA-ADPVSHNTLVAGYCRDGRLADA----- 165

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                          +       + +TY T+I+G C+ G +  A  L   M    V P+ 
Sbjct: 166 ----------ERLLAAAGLSGAANVVTYTTLINGYCRSGRLADALALIASMP---VAPDT 212

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +V+ G C A  W +A+ L  EM+     PN VTF   +   C+NG +D A  LLD 
Sbjct: 213 YTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDR 272

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           M Q+G  PD   Y+TL++GF   GRV+ A EL   M
Sbjct: 273 MPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGM 308



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + +  P  P +  +N +L  L +   ++    L   +      P+  T +ILIN  C+ G
Sbjct: 508 LFQSMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKG 567

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     V  ++ +   TPD+               TYN +I+G  +QG +D A+ L   
Sbjct: 568 LVDRAIEVFEQMPKYGSTPDI--------------FTYNALINGFSEQGRLDDARRLLST 613

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           M   + KP+ V+Y S ++G C A  W EA+ +  EM+     PN VTF
Sbjct: 614 M---SCKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D +++NT++ G C+ G +  A E  L     +   NVVTYT++I G+C +    +A  L 
Sbjct: 145 DPVSHNTLVAGYCRDGRLADA-ERLLAAAGLSGAANVVTYTTLINGYCRSGRLADALALI 203

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M    V P+  T+N ++  LC   + ++A +L+  M+++   P+  T+ T +  FC  
Sbjct: 204 ASM---PVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQN 260

Query: 239 GRVNHAKELFVSMESMGC 256
           G ++ A +L   M   GC
Sbjct: 261 GLLDRAVQLLDRMPQYGC 278


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L     ++T  ++FK + S G  P   T++ +I CFC MG +    V+
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L++  +P+V+T+ +LI                        KPDA TY  +I G  +
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  LF  M +  + PN VTYT++I G+      ++A  LF +M++ G  P+  T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++    K   + EA +    M++ G+ P+  TY + +DG C  GR   A ++F  ME
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD M++    P  V+ ++ ++  L      +  + + + +   G+ P +YT++I +
Sbjct: 256 AFAMFDRMVKDGCDPNSVT-YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK--------------------- 117
              C  G  S    +LG++ +    P++ TFT+LI                         
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  +TYN +I+ LC +G  + A  +F  M      P+  TY  +I+ FC   D  +A  +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M+  G  PNV+T+N ++   CK G ++ A  LL++M  +G++PDA+TY  L+ GF  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 238 TGRVNHAKELFVSMESMG 255
            G++ HA  LF  M   G
Sbjct: 495 GGKLEHATSLFYGMMEHG 512



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 136/270 (50%), Gaps = 29/270 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI      +A+ IFD ML+   S P V ++N ++    K  + +  + L + +   GL 
Sbjct: 426 GDI-----QKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD +T++ LI+ F + G++ H   +   ++    +P+ VT+T++I               
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 114 --KVCK----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
             K+ +    P + TYN +I G  K   + +A+    KM  + + PNV+TYTS I G C 
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS--SLLDLMIQHGVRPDA 225
                 A ++F EM  +   PN+ T++ ++  LC+ G+ ++A   +LL  +  +G  P+ 
Sbjct: 600 NGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNV 659

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY TL+ G C  GR   A +L VSM+  G
Sbjct: 660 DTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN M+  L K         +   +     +P+ +T++ LI   C+   +   F +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+++                C P+++TY+T+I+GLC +G +++A ++  +M  K ++P
Sbjct: 260 FDRMVKDG--------------CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V TYT  +   C A   +EA  L  +M  +G  PN+ TF  ++  L ++GK + A  L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G+ P   TYN L++  C+ GR   A  +F  M S G
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           SF  +L  L K    D    ++ ++ ++G+ P L T + +IN  CK GRV    +++  I
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            R                  P+A TY ++I G C+   +D A  +F +M      PN VT
Sbjct: 229 FRY--------------DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVT 274

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C      EA  +  EM+ +G++P V T+ + +  LC  G   EA  LL  M 
Sbjct: 275 YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK 334

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G  P+  T+  L+ G    G+   A  L+  M + G
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT+I+ LCK+G V +AK +   +   +  PN  TYTS+I G C  ++ + A  
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+  G  PN VT++ +++ LC  G+++EA  +L+ M+Q G+ P  +TY   L   C
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A EL   M+  GC
Sbjct: 319 DAGCSSEAVELLGKMKKRGC 338



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 24/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  M+    + P   ++N+M+   +K        +   ++   GL P++ T++ 
Sbjct: 534 DDALALFWKMVE-SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
            I+  C+ GR    F +   + +  + P++ T++SLI                       
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
             C+P+  TY T++ GLC +G   +A +L + M+ K ++P+   Y +++ G C       
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F  M   G Q ++  +  ++  LCK   ++EA  +   M++     D   +  LLD
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLD 772

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G    G  +   +L   MES  C
Sbjct: 773 GLLKEGETDLCLKLLHVMESRNC 795



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 35/231 (15%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
            + P   P    NI    L  +K+ D+VL  F  ++    F     H +  +CF  M   
Sbjct: 71  HLSPKLKPHHVVNI----LQTHKNTDSVLRFFFWISRRKFFK----HDM--SCFVSM--- 117

Query: 88  SHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                 L R++R   F P       +IK C+               +G V +  +   ++
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCR--------------NEGEVKRVTQFLSEI 157

Query: 147 KDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
             K +    + ++T+++      +  + A+ ++I+M++ G++P+++TFN +++ LCK G+
Sbjct: 158 NSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGR 217

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + EA  ++  + ++   P+AFTY +L+ G C    ++ A  +F  M   GC
Sbjct: 218 VQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGC 268



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 61/249 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--F 91
           P V ++   +  L +N        +F  +     FP+LYT+S LI   C+ GR      +
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 92  VVLGRILRSCFTPDVVTFTS------------------------------------LIKV 115
            +L R+      P+V T+T+                                    LI  
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 116 CKPDAIT--------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           CK   +                     Y  +I  LCK+ F+++A+ +F  M +K+   + 
Sbjct: 705 CKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDE 764

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V +T ++ G     + +   +L   M  +    N  T+ ++  EL     +D A  +  +
Sbjct: 765 VVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCAIKIPQI 821

Query: 216 MIQHGVRPD 224
             Q G+  D
Sbjct: 822 SQQLGIVKD 830


>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
 gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 26/281 (9%)

Query: 2   RLKSSGEGDITTI-TPNEALCIFDYMLRMHPS-PPPVSSFNIMLG--CLAKNKHYDTVLS 57
           RL +S     T+I T ++++ + D+M++  PS  P  S+++++L   C   +    +   
Sbjct: 85  RLHNSFLQSYTSISTLDDSISLLDHMVKTLPSLSPDRSTYHVLLSQSCREPDSSLSSAQK 144

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC 116
           +   + + G  P+ +T  + I   C  GRV    +++         PD  T+  L+K +C
Sbjct: 145 VLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLVKCLC 204

Query: 117 K---------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           K                     PD +TY  +ID +C    + +A  L   +K+  +KP+ 
Sbjct: 205 KSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDA 264

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y ++++G+C  N   EA R++ +M ++GV+P++VT+N ++  L K G++ EA  LL +
Sbjct: 265 FLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKI 324

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M++ G  PDA TY +L++G C  G V  A  L   ME  GC
Sbjct: 325 MVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGC 365



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 15/218 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHG 90
           S P   ++N ++ CL K++ +++V S    + S+  + PDL T++ILI+  C    +   
Sbjct: 189 SKPDTFTYNFLVKCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREA 248

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             ++  +L+ C               KPDA  YNTI+ G C      +A  ++ +MK++ 
Sbjct: 249 DRLVA-VLKECG-------------LKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEG 294

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V+P++VTY ++I G       +EAK+L   M++ G  P+ VT+  +M+ +C+ G +  A+
Sbjct: 295 VEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAA 354

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +LL+ M   G  P++ TYNTLL GFC   R+N   EL+
Sbjct: 355 ALLEEMELKGCSPNSCTYNTLLHGFCKGRRLNKGVELY 392



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           IM G    NK  + V  ++K++   G+ PDL T++ LI    K GRVS    +L  ++ S
Sbjct: 270 IMKGYCLLNKGIEAV-RIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVES 328

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
              PD              A+TY ++++G+C++G V  A  L  +M+ K   PN  TY +
Sbjct: 329 GHFPD--------------AVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNT 374

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           ++ GFC     N+   L+  +   G++    ++   +  LC+ G++ EA  + D  ++  
Sbjct: 375 LLHGFCKGRRLNKGVELYGVIKKGGMKLETASYATFVRALCREGRVAEAYEVFDYAVESK 434

Query: 221 VRPDAFTYNTL 231
              D   Y TL
Sbjct: 435 SLTDVAAYTTL 445


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L     ++T  ++FK + S G  P   T++ +I CFC MG +    V+
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L++  +P+V+T+ +LI                        KPDA TY  +I G  +
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  LF  M +  + PN VTYT++I G+      ++A  LF +M++ G  P+  T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++    K   + EA +    M++ G+ P+  TY + +DG C  GR   A ++F  ME
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD M++    P  V+ ++ ++  L      +  + + + +   G+ P +YT++I +
Sbjct: 256 AFAMFDRMVKDGCDPNSVT-YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK--------------------- 117
              C  G  S    +LG++ +    P++ TFT+LI                         
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  +TYN +I+ LC +G  + A  +F  M      P+  TY  +I+ FC   D  +A  +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +M+  G  PNV+T+N ++   CK G ++ A  LL++M  +G++PDA+TY  L+ GF  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 238 TGRVNHAKELFVSMESMG 255
            G++ HA  LF  M   G
Sbjct: 495 GGKLEHATSLFYGMMEHG 512



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 136/270 (50%), Gaps = 29/270 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI      +A+ IFD ML+   S P V ++N ++    K  + +  + L + +   GL 
Sbjct: 426 GDI-----QKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD +T++ LI+ F + G++ H   +   ++    +P+ VT+T++I               
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 114 --KVCK----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
             K+ +    P + TYN +I G  K   + +A+    KM  + + PNV+TYTS I G C 
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS--SLLDLMIQHGVRPDA 225
                 A ++F EM  +   PN+ T++ ++  LC+ G+ ++A   +LL  +  +G  P+ 
Sbjct: 600 NGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNV 659

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            TY TL+ G C  GR   A +L VSM+  G
Sbjct: 660 DTYTTLVKGLCGEGRCYEADQLVVSMQKKG 689



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN M+  L K         +   +     +P+ +T++ LI   C+   +   F +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+++                C P+++TY+T+I+GLC +G +++A ++  +M  K ++P
Sbjct: 260 FDRMVKDG--------------CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V TYT  +   C A   +EA  L  +M  +G  PN+ TF  ++  L ++GK + A  L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G+ P   TYN L++  C+ GR   A  +F  M S G
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           SF  +L  L K    D    ++ ++ ++G+ P L T + +IN  CK GRV    +++  I
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            R                  P+A TY ++I G C+   +D A  +F +M      PN VT
Sbjct: 229 FRY--------------DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVT 274

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C      EA  +  EM+ +G++P V T+ + +  LC  G   EA  LL  M 
Sbjct: 275 YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK 334

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G  P+  T+  L+ G    G+   A  L+  M + G
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+NT+I+ LCK+G V +AK +   +   +  PN  TYTS+I G C  ++ + A  
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+  G  PN VT++ +++ LC  G+++EA  +L+ M+Q G+ P  +TY   L   C
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A EL   M+  GC
Sbjct: 319 DAGCSSEAVELLGKMKKRGC 338



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 24/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  M+    + P   ++N+M+   +K        +   ++   GL P++ T++ 
Sbjct: 534 DDALALFWKMVE-SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
            I+  C+ GR    F +   + +  + P++ T++SLI                       
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
             C+P+  TY T++ GLC +G   +A +L + M+ K ++P+   Y +++ G C       
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  +F  M   G Q ++  +  ++  LCK   ++EA  +   M++     D   +  LLD
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLD 772

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G    G  +   +L   MES  C
Sbjct: 773 GLLKEGETDLCLKLLHVMESRNC 795



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 35/231 (15%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
            + P   P    NI    L  +K+ D+VL  F  ++    F     H +  +CF  M   
Sbjct: 71  HLSPKLKPHHVVNI----LQTHKNTDSVLRFFFWISRRKFFK----HDM--SCFVSM--- 117

Query: 88  SHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                 L R++R   F P       +IK C+               +G V +  +   ++
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCR--------------NEGEVKRVTQFLSEI 157

Query: 147 KDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
             K +    + ++T+++      +  + A+ ++I+M++ G++P+++TFN +++ LCK G+
Sbjct: 158 NSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGR 217

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + EA  ++  + ++   P+AFTY +L+ G C    ++ A  +F  M   GC
Sbjct: 218 VQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGC 268



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 61/249 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--F 91
           P V ++   +  L +N        +F  +     FP+LYT+S LI   C+ GR      +
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 92  VVLGRILRSCFTPDVVTFTS------------------------------------LIKV 115
            +L R+      P+V T+T+                                    LI  
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 116 CKPDAIT--------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           CK   +                     Y  +I  LCK+ F+++A+ +F  M +K+   + 
Sbjct: 705 CKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDE 764

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V +T ++ G     + +   +L   M  +    N  T+ ++  EL     +D A  +  +
Sbjct: 765 VAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCAIKIPQI 821

Query: 216 MIQHGVRPD 224
             Q G+  D
Sbjct: 822 SQQLGIVKD 830


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L  LA+N+    V  LF+ L +    P+++T +I+I+  CK G +     
Sbjct: 165 PPNTRTCNHILLRLARNRQGGLVRRLFEHLPA----PNVFTFNIVIDFLCKQGELVEARA 220

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  R+     +PDVVT+ SLI                       C  D +TYN +I+   
Sbjct: 221 LFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFS 280

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G+++KA   F +MK   V  NVVT ++ +  FC      EA +LF +M  +G+ PN  
Sbjct: 281 KFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEF 340

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  LLD M+  G+ P+  TY  ++DG C  G+V  A ++   M
Sbjct: 341 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM 400

Query: 252 ESMG 255
           E  G
Sbjct: 401 ERAG 404



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V +FNI++  L K        +LF R+ + G  PD+ T++ LI+ + K G +  
Sbjct: 193 HLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEE 252

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIID 128
             +++  + +S    DVVT+ +LI                          + +T +T +D
Sbjct: 253 VELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVD 312

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             CK+G V +A +LF +M+ + + PN  TYTS++ G C A   ++A  L  EM+ QG+ P
Sbjct: 313 AFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVP 372

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NVVT+ V++D LCK GK+  A  +L LM + GV+ +   Y TL+ G  +      A +L 
Sbjct: 373 NVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLL 432

Query: 249 VSMESMG 255
             M++ G
Sbjct: 433 NEMKNKG 439



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +F  M R+    P   ++  ++    K    D  + L   +   GL P++ T++++
Sbjct: 322 EAMKLFAQM-RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++  CK G+V+    VL  + R+    + + +T+LI                     K  
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   Y T+I GLCK   +D+AK L  KM D  ++PN V YT+++  F  A   +EA  
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVA 500

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ D G+QPNVVT+  ++D LCK G + EA S  D M + G+ P+   Y TL+DGFC
Sbjct: 501 LLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFC 560

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++ A  L   M   G
Sbjct: 561 KIGSLSKAVHLMNEMVDKG 579



 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           VS +  ++  L K +  D   SL  +++  GL P+   ++ +++ F K G+ S    +L 
Sbjct: 444 VSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLH 503

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +I  S   P+VVT+ +LI              DGLCK G + +A   F KM++  + PNV
Sbjct: 504 KIPDSGLQPNVVTYCALI--------------DGLCKAGSIYEAISHFDKMRELGLDPNV 549

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             YT++I GFC     ++A  L  EM+D+G+  + V +  ++D   K G +  A +L   
Sbjct: 550 QVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAK 609

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI+ G++ D + Y   + GFC    +  A+ +   M   G
Sbjct: 610 MIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 649



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K       +S F ++   GL P++  ++ LI+ FCK+G +S    +
Sbjct: 512 PNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHL 571

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  ++    + D V +TSL              IDG  KQG +  A  L  KM +  ++ 
Sbjct: 572 MNEMVDKGMSLDKVVYTSL--------------IDGHMKQGDLQGAFALKAKMIETGLQL 617

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  YT  I GFC  N   EA+ +  EM+  G+ P+   +N ++ +  K G M+EASSL 
Sbjct: 618 DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQ 677

Query: 214 DLM 216
           + M
Sbjct: 678 NEM 680



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT-----------YNTIIDGLCKQGFV 136
           +H   +L R+L +   P +    SL+ +    A+            ++T++  L   G +
Sbjct: 92  AHSRRLLSRLLGAGHRPHLAA--SLVDILHRAALALGPHRSALPSVFDTLLSLLADHGLL 149

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A     +++   V PN  T   ++            +RLF  +      PNV TFN++
Sbjct: 150 DDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHL----PAPNVFTFNIV 205

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LCK G++ EA +L   M   G  PD  TYN+L+DG+   G +   + L   M   GC
Sbjct: 206 IDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGC 265


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++  ++  LAKNK     ++L +++ + G  P + T++ L+N  CKMGR+     +L 
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 318

Query: 96  RILRSCFTPDVVTFTSLI-------------KVCKP--------DAITYNTIIDGLCKQG 134
           +I+ +  TPDVVT+TSLI             K+ K         D + Y  +I GL + G
Sbjct: 319 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTG 378

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A  ++  M      P+VVT +++I G   A     A R+F  M  +G+ PN V ++
Sbjct: 379 KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYS 438

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LCK  KMD A  +L  M +    PD  TYN L+DG C +G V  A+  F  M   
Sbjct: 439 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEA 498

Query: 255 GC 256
           GC
Sbjct: 499 GC 500



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P   ++F+I++  L K        SL +   + G   D++T++ ++N   K  ++     
Sbjct: 221 PVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVA 280

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           ++ +I  +  TP + T              YN +++GLCK G +++A +L  K+ D    
Sbjct: 281 LMEKITANGCTPTIAT--------------YNALLNGLCKMGRLEEAIDLLRKIVDNGCT 326

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+VVTYTS+I G        EA +LF EM  +G+  + V +  ++  L + GK+ +ASS+
Sbjct: 327 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSV 386

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              M  HG  PD  T +T++DG    GR+  A  +F SME+ G
Sbjct: 387 YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 429



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 28/243 (11%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V + + M+  L+K       + +FK + + GL P+   +S LI+  CK  ++  
Sbjct: 393 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 452

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              +L ++ ++  TPD +T+  LI                       CKPD  TYN +I 
Sbjct: 453 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 512

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK G  D A  +   M           Y+S++ G C +        LF EM   GV  
Sbjct: 513 GLCKAGNTDAACGVLDDMSSSR-----FVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-A 566

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N  T   ++  LCK  ++DEA SL + + + G+ P  + YN+++     +G+VN  + ++
Sbjct: 567 NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVY 625

Query: 249 VSM 251
             M
Sbjct: 626 QEM 628



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 20/253 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ IF  M     +P  V  ++ ++  L K +  D  L +  ++      PD  T++ILI
Sbjct: 418 AVRIFKSMEARGLAPNEVV-YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 476

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP---DA------------IT 122
           +  CK G V         +L +   PDV T+  LI  +CK    DA              
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV 536

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y++++DGLCK G ++    LF +M+   V  N  T T +I   C AN  +EA  LF  + 
Sbjct: 537 YSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIR 595

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G+ P+   +N I+  L K+GK++E  ++   M +   +PD  TYN LL+G     R++
Sbjct: 596 KEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMTRWW-KPDRVTYNALLNGMIGANRMD 653

Query: 243 HAKELFVSMESMG 255
            A   ++ M   G
Sbjct: 654 RAHYYYLEMTGRG 666



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 27/247 (10%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHG 90
           P V ++N+++   CLA+    +   ++ + +    G+ P L TH+++++  CK G+V   
Sbjct: 152 PDVETWNVLITGYCLAREP--EEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA 209

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDG 129
                 + RS       TF+ LI                       C  D  TY  I++ 
Sbjct: 210 MDHFEAVRRS-MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNW 268

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K   + +A  L  K+      P + TY +++ G C      EA  L  +++D G  P+
Sbjct: 269 LAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           VVT+  ++D L K  +  EA  L   M   G+  D   Y  L+ G   TG++  A  ++ 
Sbjct: 329 VVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYK 388

Query: 250 SMESMGC 256
           +M S GC
Sbjct: 389 TMTSHGC 395



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 23/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + N +L   A+ K +    +L K   +T   PD+ T ++LI  +C        F V+ 
Sbjct: 119 VHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVI- 177

Query: 96  RILRSCF--TPDVVT--------------------FTSLIKVCKPDAITYNTIIDGLCKQ 133
           R +   F   P + T                    F ++ +     A T++ +I+GL K 
Sbjct: 178 REMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKA 237

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  L  +        ++ TYT+++          EA  L  ++   G  P + T+
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY 297

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N +++ LCK G+++EA  LL  ++ +G  PD  TY +L+DG     R   A +LF  M S
Sbjct: 298 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS 357

Query: 254 MG 255
            G
Sbjct: 358 RG 359



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 29/235 (12%)

Query: 21  CIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           C  + + +M  +   P   ++NI++  L K+   +   + F  +   G  PD+YT++ILI
Sbjct: 452 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 511

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------P 118
           +  CK G       VL  +  S F      ++SL+  +CK                    
Sbjct: 512 SGLCKAGNTDAACGVLDDMSSSRFV-----YSSLVDGLCKSGKLEGGCMLFHEMERSGVA 566

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           ++ T   +I  LCK   VD+A  LF  ++ + + P+   Y S+I     +   NE + ++
Sbjct: 567 NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVY 625

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            EM  +  +P+ VT+N +++ +    +MD A      M   G  P     + L D
Sbjct: 626 QEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLAD 679



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 26/204 (12%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   FD ML      P V ++NI++  L K  + D    +   ++S+      + +S L+
Sbjct: 488 ARAFFDEMLEA-GCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSS-----RFVYSSLV 541

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFT-------------------PDVVTFTSLIKVCKPD 119
           +  CK G++  G ++   + RS                        V  F ++ K   P 
Sbjct: 542 DGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPH 601

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
              YN+II  L K G V++ + ++ +M  +  KP+ VTY +++ G   AN  + A   ++
Sbjct: 602 PYAYNSIISALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYL 660

Query: 180 EMMDQGVQPNVVTFNVIMDELCKN 203
           EM  +G  P V   + + D+  K+
Sbjct: 661 EMTGRGYVPPVSILHKLADDRLKD 684



 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G Q +V T N ++D   +  +  EA +LL   +    RPD  T+N L+ G+CL      A
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173

Query: 245 KELFVSME 252
             +   ME
Sbjct: 174 FAVIREME 181



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 136 VDKAKELF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            D A ELF  L       + +V T  +++  F       EA  L    +    +P+V T+
Sbjct: 98  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETW 157

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NV++   C   + +EA +++  M +  GV P   T+N +L G C +G+V  A + F
Sbjct: 158 NVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHF 213


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDL 71
           T T ++A+  F  ML +HP PP + S N +L  + K KHY TV+SL   L+S G   P L
Sbjct: 33  TPTFDDAVSTFHRMLHLHP-PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSL 91

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
            T SI IN    +G++   F V+ +I++  F  D  T T+L+K              GLC
Sbjct: 92  VTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMK--------------GLC 137

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            +G   +A  L+     K    + V Y ++I G C      +A  L  +M   GV+PN++
Sbjct: 138 LKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLI 197

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N+++D LCK G + EA  L   M+  G+  D FTYN+L+ GFC  G+   A  L   M
Sbjct: 198 MYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEM 257



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-----IKVCK------ 117
           PD+YT +IL++  CK+G V+    V G +++    PDVV+  +L     ++ C       
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     P+ I+Y+T+I+G CK   VD+A  L  +M  +N+ P+ VTY  ++ G   
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSK 384

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +        L   M   G  P+++T+NV++D+  K   +D+A +L   ++  G+ P+  T
Sbjct: 385 SGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRT 444

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           YN L+DG C  GR+  AKE+F  +   GC
Sbjct: 445 YNILIDGLCKGGRMKAAKEIFQLLSVKGC 473



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 133/260 (51%), Gaps = 23/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL ++D+ +    S   V    ++ G     K  D +  L +++   G+ P+L  ++++
Sbjct: 144 EALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAI-ELLRKMEKGGVRPNLIMYNMV 202

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------KV 115
           ++  CK G V+    +   ++      DV T+ SLI                      + 
Sbjct: 203 VDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED 262

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD  T+N ++D LCK G V +A+ +F  M  + ++P+VV+  +++ G+C     +EAK
Sbjct: 263 VRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAK 322

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M+++G  PNV++++ +++  CK   +DEA  LL  M Q  + PD  TYN LLDG 
Sbjct: 323 EVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGL 382

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +GRV +  +L  +M + G
Sbjct: 383 SKSGRVLYEWDLVEAMRASG 402



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 21/238 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + + M+      P V +FNI++  L K        ++F  +   GL PD+ + + L+
Sbjct: 250 AVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALM 309

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           N +C  G +S    V  R++     P+V+++++LI   CK                    
Sbjct: 310 NGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLV 369

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD +TYN ++DGL K G V    +L   M+     P+++TY  ++  +      ++A  L
Sbjct: 370 PDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALAL 429

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F  ++D G+ PN+ T+N+++D LCK G+M  A  +  L+   G RP+  TYN +++G 
Sbjct: 430 FQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 32/241 (13%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIM-----LGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           EA  +F  M++    P  VS   +M      GC+++ K       +F R+   G  P++ 
Sbjct: 285 EARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKE------VFDRMVERGKLPNVI 338

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK--------------- 117
           ++S LIN +CK+  V     +L  + +    PD VT+  L+                   
Sbjct: 339 SYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAM 398

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD ITYN ++D   K+  +DKA  LF  + D  + PN+ TY  +I G C     
Sbjct: 399 RASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRM 458

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
             AK +F  +  +G +PN+ T+N++++ L + G +DEA +LL  M+  G  P+A T++ L
Sbjct: 459 KAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPL 518

Query: 232 L 232
           +
Sbjct: 519 V 519



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 22/205 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+      P V S++ ++    K K  D  L L   ++   L PD  T++ 
Sbjct: 319 SEAKEVFDRMVE-RGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNC 377

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----KVC--------------- 116
           L++   K GRV + + ++  +  S   PD++T+  L+     + C               
Sbjct: 378 LLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTG 437

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TYN +IDGLCK G +  AKE+F  +  K  +PN+ TY  +I G       +EA+
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAE 497

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDEL 200
            L +EM+D G  PN VTF+ ++  L
Sbjct: 498 ALLLEMVDDGFPPNAVTFDPLVRAL 522


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K  +    L +F+ ++  G+   + T++ LI    K G+V     +
Sbjct: 285 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 344

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
               +R    PD+V + +LI                     K   PD +TYNT++ GLC 
Sbjct: 345 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 404

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A++L  +M ++ ++P++VTY ++I G+    D  +A R+  EMM++G  P ++T
Sbjct: 405 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 464

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCKNG+ D+A +++  M+++G+ PD  TY +L++G 
Sbjct: 465 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +        L + +   GL PD++T++ILIN  CK G V     +  
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 311

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R      VVT+T+LI                     +  +PD + YN +I+     G
Sbjct: 312 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 371

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E+  +M+ K + P+ VTY +++RG C     +EA++L  EM ++G+QP++VT+N
Sbjct: 372 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 431

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + + M+  G  P   TYN L+ G C  G+ + A+ +   M   
Sbjct: 432 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491

Query: 255 G 255
           G
Sbjct: 492 G 492



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD ML      P    +N ++G        DT L    R+   G+   + T+++
Sbjct: 198 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 257

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR +  + ++  +      PDV               TYN +I+G CK+G V
Sbjct: 258 LVHALFMDGRGTEAYELVEEMGGKGLAPDV--------------FTYNILINGHCKEGNV 303

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F  M  + V+  VVTYT++I          E  +LF E + +G++P++V +N +
Sbjct: 304 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G +D A  ++  M +  + PD  TYNTL+ G CL GRV+ A++L   M   G
Sbjct: 364 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 122/277 (44%), Gaps = 52/277 (18%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-------------FPDLYTHSI 76
           H    P S  N++L   A  + + T L L+ R+ S  L              P     ++
Sbjct: 42  HLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL 101

Query: 77  LINCF-CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
             + F  ++   +  F ++ R L S   P       L ++ +P+A+TYNT+I G C +G 
Sbjct: 102 FADMFRLRLPLCTTTFNIMLRHLCSAGKP-ARALELLRQMPRPNAVTYNTVIAGFCSRGR 160

Query: 136 VDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTF 193
           V  A ++  +M+++  + PN  TY +VI G+C     +EA ++F EM+ +G V+P  V +
Sbjct: 161 VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMY 220

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGV-------------------------------- 221
           N ++   C  GK+D A    D M++ GV                                
Sbjct: 221 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 280

Query: 222 ---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               PD FTYN L++G C  G V  A E+F +M   G
Sbjct: 281 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 317



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL IF+ M R       V ++  ++  L+K         LF      G+ PDL  ++ L
Sbjct: 305 KALEIFENMSR-RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           IN     G +   F ++G + +    PD VT+ +L++ +C                    
Sbjct: 364 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGI 423

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +TYNT+I G   +G V  A  +  +M +K   P ++TY ++I+G C     ++A+ 
Sbjct: 424 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 483

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL 200
           +  EM++ G+ P+  T+  +++ L
Sbjct: 484 MVKEMVENGITPDDSTYISLIEGL 507


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D N+A  L  EM  +G++P+  
Sbjct: 241 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 300

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  ++ G C  GR   A+++   M
Sbjct: 301 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREM 360

Query: 252 ESMG 255
            S+G
Sbjct: 361 LSVG 364



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K +++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 79  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 138

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 139 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 198

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 258

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G +++A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 259 SLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAA 318

Query: 245 KE 246
            E
Sbjct: 319 FE 320



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 192 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 251

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 252 YKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCK 311

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 312 EGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGT 371

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 372 YTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 137 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 190

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G +++A  L  +M  K +KP+  TYT++I G C
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCC 310

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  I+  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 311 KEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTG 370

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 371 TYTMIINEFCKKGDVWKGSKLLKEMQRNG 399



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 110

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 111 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 170

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 171 RLGDLDEGFRLKSAMLASG 189


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P++ T
Sbjct: 324 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 384 YTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 151 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 149 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 202

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI              
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  +   PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 322

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 323 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIG 382

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 383 TYTMIINEFCKKGDVWKGSKLLKEMQRNG 411



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + ++++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 123 FYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 183 RLGDLDEGFRLKSAMLASG 201


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + + G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFX 179

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 180 LKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 299

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  +++  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 300 TYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREM 359

Query: 252 ESMG 255
            S+G
Sbjct: 360 LSVG 363



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 136 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRXGDLDEGFXLKSXMLASGV 189

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI              
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  +   PD ITYNT+I GLCK+G + +A  L  +M  K +KP+ +TYT++I G C
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCC 309

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++   C+ G+  +A  +L  M+  G++PDA 
Sbjct: 310 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDAR 369

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 370 TYTMIINEFCKXGDVWXGSKLLKEMQRDG 398



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 191 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 250

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+I+G CK
Sbjct: 251 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCK 310

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 311 EGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDART 370

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G +   S LL  M + G  P   TYN L++G
Sbjct: 371 YTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 78  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYS 197

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL++G C  G ++ A
Sbjct: 258 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSA 317

Query: 245 KE 246
            E
Sbjct: 318 FE 319



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 50  RSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L   M + G
Sbjct: 170 RXGDLDEGFXLKSXMLASG 188


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 22/241 (9%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           ++F +++   +   +    L  F+RL   GL P+L   + +I   CK G +   F +L  
Sbjct: 241 ATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEE 300

Query: 97  ILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQG 134
           ++   + P+V T TSLI  +CK                     P+ +TY  +I G C++ 
Sbjct: 301 MVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRED 360

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +++A+ L  +MK++ + PN  TYT++I G C A ++  A  L   M  +G  PN+ T+N
Sbjct: 361 KLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYN 420

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            I++ LCK G++ EA  +L+   Q+G++PD FTYN L+   C    +  A  LF  M  +
Sbjct: 421 AIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKI 480

Query: 255 G 255
           G
Sbjct: 481 G 481



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 57/248 (22%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRV-----------SHGFVV------------- 93
           LF+ +   G+ PD  ++ +++  +CK+G +             GFVV             
Sbjct: 192 LFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS 251

Query: 94  -----------LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAI 121
                        R++     P+++ FT +I                     K  KP+  
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVY 311

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           T+ ++IDGLCK+G+ +KA  LFLK+ + +N KPNV+TYT++I G+C  +  N A+ L   
Sbjct: 312 THTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSR 371

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M +QG+ PN  T+  ++D  CK G  + A  L++LM   G  P+  TYN +++G C  GR
Sbjct: 372 MKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGR 431

Query: 241 VNHAKELF 248
           V  A ++ 
Sbjct: 432 VQEAYKML 439



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 131/272 (48%), Gaps = 28/272 (10%)

Query: 6   SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           SG+G  T      AL  F  ++ M   P  ++ F  M+  L K         + + +   
Sbjct: 251 SGKGYTT-----RALWYFRRLVDMGLEPNLIN-FTCMIEGLCKRGSIKQAFEMLEEMVGK 304

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIK-VCKPDAI-- 121
           G  P++YTH+ LI+  CK G     F +  +++RS    P+V+T+T++I   C+ D +  
Sbjct: 305 GWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNR 364

Query: 122 ------------------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIR 163
                             TY T+IDG CK G  ++A +L   M  +   PN+ TY +++ 
Sbjct: 365 AEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVN 424

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           G C      EA ++  +    G++P+  T+N++M E CK   + +A +L + M++ G++P
Sbjct: 425 GLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQP 484

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  +Y TL+  FC   R+  ++  F     +G
Sbjct: 485 DIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +F  ++R     P V ++  M+    +    +    L  R+   GL P+  T++ 
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK G     + ++  +    F+P++ T+ +++  +CK                  
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG 446

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TYN ++   CKQ  + +A  LF KM    ++P++ +YT++I  FC  N   E++
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESE 506

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F E +  G+ P   T+  ++   C+ G +  A      +  HG  PD+ TY  ++ G 
Sbjct: 507 MFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGL 566

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   + + A+ L+ SM   G
Sbjct: 567 CKQSKRDEARSLYDSMIEKG 586



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 21/224 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++    K  +++    L   ++S G  P+L T++ ++N  CK GRV   + +
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 94  LGRILRSCFTPDVVT--------------------FTSLIKV-CKPDAITYNTIIDGLCK 132
           L    ++   PD  T                    F  ++K+  +PD  +Y T+I   C+
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  + +++  F +     + P   TYTS+I G+C   +   A + F  + D G  P+ +T
Sbjct: 499 ENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSIT 558

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  I+  LCK  K DEA SL D MI+ G+ P   T  TL   +C
Sbjct: 559 YGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYC 602



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           +++ GL P+  T + +I    +MG V +  ++   +               ++  +PD+I
Sbjct: 161 MHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMC--------------VRGVQPDSI 206

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +Y  ++   CK G + +A +    M ++    +  T+T +I  F        A   F  +
Sbjct: 207 SYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRL 266

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D G++PN++ F  +++ LCK G + +A  +L+ M+  G +P+ +T+ +L+DG C  G  
Sbjct: 267 VDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWT 326

Query: 242 NHAKELFVSM 251
             A  LF+ +
Sbjct: 327 EKAFRLFLKL 336



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 21/190 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K         + +     GL PD +T++IL++  CK   +     +
Sbjct: 414 PNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALAL 473

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             ++L+    PD+ ++T+LI V C+                    P   TY ++I G C+
Sbjct: 474 FNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCR 533

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +  A + F ++ D    P+ +TY ++I G C  +  +EA+ L+  M+++G+ P  VT
Sbjct: 534 EGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593

Query: 193 FNVIMDELCK 202
              +  E CK
Sbjct: 594 RITLAYEYCK 603



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+  T N II    + G V+ A+ LF +M  + V+P+ ++Y  ++  +C   +  EA + 
Sbjct: 168 PNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKW 227

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+++G   +  TF +I+      G    A      ++  G+ P+   +  +++G C 
Sbjct: 228 LSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCK 287

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A E+   M   G
Sbjct: 288 RGSIKQAFEMLEEMVGKG 305



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 27/238 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           ++LC +    ++ P    +      L C + N+H    +S  +RL+  G+  D  TH   
Sbjct: 25  KSLCYYSSSTQLQPISQTMVQRVCSLVCESYNQHAHMRVSS-QRLH-FGIEVDFLTHEQA 82

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++    +   +   V L     +   P    F  L  VC    I                
Sbjct: 83  VSVVASLASDAGSMVTLSFFHWAIGYPKFRHFMRLYIVCAMSLIG--------------- 127

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
                     ++N +        ++  F       EA  + IEM +QG+ PN  T N I+
Sbjct: 128 ----------NRNSEKACEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWII 177

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               + G ++ A  L + M   GV+PD+ +Y  ++  +C  G +  A +    M   G
Sbjct: 178 KVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERG 235


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD M R     P V ++  +L    K+K       +F R+     +P+  T+S 
Sbjct: 504 EQAQSWFDEM-RSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSA 562

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC----------------FTPDVVTFTSLI------- 113
           LI+  CK G +     V  +++ +                  +P+VVT+ +L+       
Sbjct: 563 LIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQ 622

Query: 114 KV--------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           KV              C+P+ I Y+ ++DG CK G +D A+E+FL+M      P+V TYT
Sbjct: 623 KVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYT 682

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I         + A ++  +M+     PNVVT+  ++D LCK G+ ++A +LL LM + 
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKK 742

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  L+DG    G+V+   ELF+ M++ GC
Sbjct: 743 GCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGC 779



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 121/301 (40%), Gaps = 78/301 (25%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGR 86
           PP    +NI +G +   +      +L L +++    L      + I       C C +G+
Sbjct: 373 PPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGK 432

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
               F ++  ++R  F PD  T+T +I  +C+                    PD  TY  
Sbjct: 433 FEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +ID  CK G +++A+  F +M+     PNVVTYT+++  +  +    +A  +F  M+   
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 186 VQPNVVTFNVIMDELCKNG----------------------------------------- 204
             PN +T++ ++D LCK G                                         
Sbjct: 553 CYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYG 612

Query: 205 ----------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
                     K+ +A  LLD M+  G  P+   Y+ L+DGFC  G ++ A+E+F+ M   
Sbjct: 613 ALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKC 672

Query: 255 G 255
           G
Sbjct: 673 G 673



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 54/272 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K +       L   + + G  P+   +  L++ FCK+G +     V
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIIDGLCK 132
             R+ +  + P V T+TSLI             KV        C P+ +TY  ++DGLCK
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  +KA  L   M+ K   PNVVTYT++I G   A   +    LF++M  +G  PN VT
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVT 785

Query: 193 FNVIMDELCKNG---------------------------------KMDEASSLLDLMIQH 219
           + ++++  C  G                                 +   +  LL+ M  H
Sbjct: 786 YRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESH 845

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              P A  Y  L+D F   GR+  A EL   M
Sbjct: 846 DTAPIAPVYGMLIDSFSKAGRLETALELHKEM 877



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 21/241 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I + M+    +P P S FN ++      + Y     LF R+N+ G  P    ++I I   
Sbjct: 328 IINMMMTEGCNPSP-SLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSI 386

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTS------LIKVCKPDAITYNTIIDGLCKQGF 135
           C    + +              P+++          L+  C  + I        LC  G 
Sbjct: 387 CGREELPN--------------PELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGK 432

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            +KA ++  +M  K   P+  TYT VI   C A   ++A  LF EM   GV P+V T+ +
Sbjct: 433 FEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK G +++A S  D M   G  P+  TY  LL  +  + ++  A ++F  M    
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 256 C 256
           C
Sbjct: 553 C 553



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 17/205 (8%)

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
           +   L    RL   G  P   T++ L+      G+V   F V   +  S F  D  T  S
Sbjct: 185 WGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGS 244

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             +               LCK+G    A +L   ++ ++ K + V  T +I G   A+ +
Sbjct: 245 FAQ--------------ALCKEGRWGDALDL---LEREDFKLDTVLCTQMISGLMEASLF 287

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           NEA      M      PNVVT+  ++    K  ++     ++++M+  G  P    +N+L
Sbjct: 288 NEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSL 347

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +  +C      +A +LF  M + GC
Sbjct: 348 VHTYCNAEDYAYAYKLFNRMNTCGC 372



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 26/238 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  M+  L K    +  L+L   +   G  P++ T++ LI+   K G+V  G  +
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLEL 770

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAIT---------------------YNTIIDGLCK 132
             ++      P+ VT+  LI  C    +                      Y T + G  K
Sbjct: 771 FMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK 830

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +        L  +M+  +  P    Y  +I  F  A     A  L  EMM+     N+ +
Sbjct: 831 RFLASLG--LLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMAS 888

Query: 193 FNV---IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++   ++  LC + +++EA +L   M + G+ PD   +  L+ G     + N A +L
Sbjct: 889 KDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQL 946



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 11/138 (7%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           +K +   L L + + S    P    + +LI+ F K GR+     +           +++ 
Sbjct: 829 SKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALEL---------HKEMME 879

Query: 109 FTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
            +S + +   D   + ++I  LC    V++A  L+ +M+ + + P++  +  +++G    
Sbjct: 880 VSSSLNMASKD--MHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIER 937

Query: 169 NDWNEAKRLFIEMMDQGV 186
           N WNEA +L   +  +GV
Sbjct: 938 NKWNEALQLCYGICQEGV 955


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+S+N+++ C  K    D    + K +   G+ P+L T + LI+ + K+G V +   VL 
Sbjct: 421 VTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLK 480

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++     PD++TFTSLI              +GLC    +D A + F +M +  V+PN 
Sbjct: 481 MLMEHGLIPDIITFTSLI--------------NGLCHTHQLDDAFDCFNEMAEWGVRPNA 526

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  ++   C A   N+A  L  +M   G+ P+  +FN  +   C+  K+D+A ++ + 
Sbjct: 527 HTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNA 586

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M++ GV PD +TYN+L+   C   R++ AKE+ + MES G
Sbjct: 587 MLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSG 626



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 22/216 (10%)

Query: 42  MLGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           +LGC + +K  HY       KR+   GL   + +++++I+CF K G V     ++  +  
Sbjct: 396 LLGCKSSSKANHY------LKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMRE 449

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
               P++VTF              NT+I G  K G V  AK +   + +  + P+++T+T
Sbjct: 450 KGVLPNLVTF--------------NTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFT 495

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I G C+ +  ++A   F EM + GV+PN  T+NV+M  LC  G +++A  LL+ M + 
Sbjct: 496 SLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKD 555

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G+ PDA+++N  +  FC   +V+ A+ +F +M  +G
Sbjct: 556 GITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLG 591



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 19/218 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++   +K  +     ++ K L   GL PD+ T + LIN  C   ++   F  
Sbjct: 454 PNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAF-- 511

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                  CF  ++  +       +P+A TYN ++  LC  G V+KA +L  KMK   + P
Sbjct: 512 ------DCFN-EMAEWG-----VRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITP 559

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  ++ + I  FC     ++A+ +F  M+  GV P+  T+N ++  LC   ++DEA  +L
Sbjct: 560 DAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEIL 619

Query: 214 DLMIQHGVRPDAFTYNT---LLDGFCLTGRVNHAKELF 248
            LM   G    A T++T   ++     TG+ + A +L 
Sbjct: 620 LLMESSG--SSATTHHTHLPIVSALTKTGQFSKAGQLM 655



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP  S++  ML CL+KN+    V+ + K++NS G   D     I+++C  K   +S    
Sbjct: 313 PPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCG 372

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L   ++    P    +  +IK          +++   CK     KA     +M    + 
Sbjct: 373 LLDDFVKKGGNPGFDVYIMVIK----------SLLG--CKSS--SKANHYLKRMVLDGLL 418

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
             V +Y  VI  F  A   ++A  +  EM ++GV PN+VTFN ++    K G +  A ++
Sbjct: 419 SGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAV 478

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L ++++HG+ PD  T+ +L++G C T +++ A + F  M   G
Sbjct: 479 LKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWG 521



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+        +I    + G    A E+F++M    ++P+   Y ++I     A   + A 
Sbjct: 137 CEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAY 196

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F +M   G QP+  T+N ++  +C+ G +DEA  L+  M   G+RP+ FTY  L+DGF
Sbjct: 197 LRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGF 256

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GR   A  +F +M+  G
Sbjct: 257 CNAGRPEDAVHVFDTMKEKG 276



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN +I    + G VD A   F +M     +P+  TY +++ G C     +EA R
Sbjct: 173 RPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALR 232

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           L  +M   G++PNV T+ +++D  C  G+ ++A  + D M + GV P+  +Y TL+ G
Sbjct: 233 LVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHG 290



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 21/142 (14%)

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI  + ++G   +   V  ++ R    P    + +LI                       
Sbjct: 147 LIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADG 206

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+PD  TYNT++ G+C++G +D+A  L  +M+   ++PNV TYT ++ GFC A    +A 
Sbjct: 207 CQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAV 266

Query: 176 RLFIEMMDQGVQPNVVTFNVIM 197
            +F  M ++GV PN  ++  ++
Sbjct: 267 HVFDTMKEKGVSPNEASYRTLV 288



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 14/187 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N ++    +    DT    F+++ + G  PD +T++ L++  C+ G +      
Sbjct: 174 PSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEAL-- 231

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R++R      +          +P+  TY  ++DG C  G  + A  +F  MK+K V P
Sbjct: 232 --RLVRQMEGAGI----------RPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSP 279

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  +Y +++ G       ++A  +  E + +   P+   +  ++  L KN    E   + 
Sbjct: 280 NEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVT 339

Query: 214 DLMIQHG 220
             M   G
Sbjct: 340 KKMNSRG 346



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L    H +  + L  ++   G+ PD Y+ +  I  FC+M +V     +
Sbjct: 524 PNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNI 583

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +LR    PD  T+ SLIK               LC +  +D+AKE+ L M+      
Sbjct: 584 FNAMLRLGVVPDNYTYNSLIK--------------ALCDERRIDEAKEILLLMESSGSSA 629

Query: 154 NV-VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
               T+  ++        +++A +L  +   + VQ
Sbjct: 630 TTHHTHLPIVSALTKTGQFSKAGQLMNKYNRRNVQ 664


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 22/237 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +S  N  +  L K    +  L   +R+  TG+ PD+ T++ LI  +C + R+     +
Sbjct: 268 PSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALEL 327

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           +  +      PD V++ +++  +CK                     PD +TYNT+I  L 
Sbjct: 328 IAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLS 387

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D A     + +DK    + V Y++++  FC     +EAK L I+M  +G  P+VV
Sbjct: 388 KHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVV 447

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T+  I+D  C+ G++DEA  +L  M +HG +P+  +Y  LL+G C +G+   A+E+ 
Sbjct: 448 TYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 504



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E  C+ + M+      P   ++N ++  L+K+ H D  L+  K     G   D   +S 
Sbjct: 357 EEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSA 416

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++ FC+ GR+     +            V+   S  + C PD +TY  I+DG C+ G +
Sbjct: 417 IVHSFCQKGRMDEAKSL------------VIDMYS--RGCNPDVVTYTAIVDGFCRLGRI 462

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+AK++  +M     KPN V+YT+++ G C++    EA+ +     +    PN +T+  +
Sbjct: 463 DEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAV 522

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M  L + GK+ EA  L   M++ G  P     N L+   C   +V  AK+      + GC
Sbjct: 523 MHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGC 582



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 23/257 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +   M R     PP  +F  ++   ++       L +   +   G+ P L   +  I   
Sbjct: 222 VLRLMTRRGIECPP-EAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVL 280

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
            K G++      L R+  +   PD+VT+ SLI                     K C PD 
Sbjct: 281 VKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDK 340

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           ++Y T++  LCK+  +++ K L  KM  + N+ P+ VTY ++I         ++A     
Sbjct: 341 VSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLK 400

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           E  D+G   + V ++ I+   C+ G+MDEA SL+  M   G  PD  TY  ++DGFC  G
Sbjct: 401 EAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLG 460

Query: 240 RVNHAKELFVSMESMGC 256
           R++ AK++   M   GC
Sbjct: 461 RIDEAKKILQQMYKHGC 477



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 56/255 (21%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D   SL   + S G  PD+ T++ +++ FC++GR+     +L ++ +    P+ V++T+L
Sbjct: 428 DEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTAL 487

Query: 113 IK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           +  +C                     P+AITY  ++ GL ++G + +A +L  +M +K  
Sbjct: 488 LNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGF 547

Query: 152 KP-----------------------------------NVVTYTSVIRGFCYANDWNEAKR 176
            P                                   NVV +T+VI GFC   D   A  
Sbjct: 548 FPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALS 607

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  +M   G  P+ VT+  + D L K G++DEA+ L+  M+  G+ P   TY +++  + 
Sbjct: 608 VLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYS 667

Query: 237 LTGRVNHAKELFVSM 251
             GRV+    L   M
Sbjct: 668 QWGRVDDMLNLLEKM 682



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 23/231 (9%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++  ++  L +         L + +   G FP     ++LI   C+  +V  
Sbjct: 510 HWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVE 569

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIID 128
               L   L      +VV FT++I   C+                    PDA+TY  + D
Sbjct: 570 AKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFD 629

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L K+G +D+A EL +KM  K + P  VTY SVI  +      ++   L  +M+ +  QP
Sbjct: 630 ALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKR--QP 687

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
               +N ++++LC  G ++EA  LL  +++   + DA T + L++ +   G
Sbjct: 688 FRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKG 738



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + Y T++D L K      A+ +   M  + ++     +  V+  +  A     A R+   
Sbjct: 201 VVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTL 260

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   GV+P++   N  +  L K GK+++A   L+ M   G++PD  TYN+L+ G+C   R
Sbjct: 261 MQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNR 320

Query: 241 VNHAKELFVSMESMGC 256
           +  A EL   + S GC
Sbjct: 321 IEDALELIAGLPSKGC 336


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S N +L  L K    D    ++K +   G+ P+ YT +IL + FC+ G V      
Sbjct: 212 PSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDF 271

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+    F PD+VT              YNT+I   C++G +D A  L+  M  +NV P
Sbjct: 272 LERMEEEGFEPDIVT--------------YNTLISCYCRKGRLDDAFYLYRIMYRRNVLP 317

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++V+YT+++ G C      EA +LF  M+ +G+ P++V+FN ++   CK GKM E+ SLL
Sbjct: 318 DLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLL 377

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI  G+ PD  T   L++G+    R+  A  L V +E  G
Sbjct: 378 HEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFG 419



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVL----SLFKRLNSTGLFPDLYTH 74
           AL  F ++       P + ++  ++  LA +K +   +     L K +       D++  
Sbjct: 108 ALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQT 167

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQ 133
            +     C    V    +V   +          TF  +++V C P  I+ N +++GL K 
Sbjct: 168 LLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKL 227

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D+  +++ +M    + PN  T+  +   FC   D ++       M ++G +P++VT+
Sbjct: 228 NRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTY 287

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N ++   C+ G++D+A  L  +M +  V PD  +Y  L++G C  G+V  A +LF  M  
Sbjct: 288 NTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIH 347

Query: 254 MG 255
            G
Sbjct: 348 RG 349



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 69/323 (21%)

Query: 1   ERLKSSG-EGDITTITP-----------NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAK 48
           ER++  G E DI T              ++A  ++  M R +  P  VS   +M G L K
Sbjct: 273 ERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNG-LCK 331

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
                    LF R+   GL PD+ + + LI  +CK G++     +L  ++ S   PD VT
Sbjct: 332 EGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVT 391

Query: 109 FTSL------------------------------------IKVCK--------------- 117
              L                                    + +C+               
Sbjct: 392 CQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRIS 451

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                P    YN +I+ LCK   +  A  +  +M  +N+KP+ +TY ++I   C  +   
Sbjct: 452 QRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSM 511

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA+ L  EM+  G+ P+      +M   CK   + +A +LL    +     D+ +YNTL+
Sbjct: 512 EAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLV 571

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
             +C         EL   M  +G
Sbjct: 572 KTYCEDADATRLMELQDRMLKVG 594



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 14/181 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N ++  L K+      L +   +    + P   T+  LI C C+  R      +
Sbjct: 457 PGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESL 516

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +L+S   PD     +L+ V               CK+  + KA+ L      +    
Sbjct: 517 MEEMLQSGMLPDPDICRALMHV--------------YCKERDIGKAETLLQTFAKEFQIF 562

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  +Y ++++ +C   D      L   M+  G  PN+ TF  ++  L K   +++   LL
Sbjct: 563 DSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWKAMAVEKDKLLL 622

Query: 214 D 214
           +
Sbjct: 623 E 623


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F++M R+H   P + +  ++L  LAK +  + V  ++K++   G+ P+++  ++
Sbjct: 169 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 227

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           LI+  CK G V     +L  +      PD+ T+ +LI + CK                  
Sbjct: 228 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 287

Query: 118 --PDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             PD +TYN++I G C++   +++A  L   M+ + + P VVTY S++R  C      +A
Sbjct: 288 VSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDA 347

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            RL  EM ++ V+P+ VT N +++  CK G M  A  +   M++ G++PD FT+  L+ G
Sbjct: 348 NRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHG 407

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           FC    V+ AKE    M   G
Sbjct: 408 FCKLHEVDSAKEFLFEMLDAG 428



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 23/257 (8%)

Query: 22  IFDYMLRMHPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           + + ++R+H  P   S   + ++   A ++     + +F+ +   G  P L+  ++L+N 
Sbjct: 137 VLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNS 196

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPD 119
             K    +  + V  +++R    P++  F  LI  C                      PD
Sbjct: 197 LAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPD 256

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY-ANDWNEAKRLF 178
             TYNT+I   CK+G   +A  +  +M+   V P++VTY S+I GFC   ND  EA RL 
Sbjct: 257 LFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLR 316

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M  +G+ P VVT+N I+ +LC+ GK+ +A+ LL+ M +  V PD  T NTL++ +C  
Sbjct: 317 EVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKI 376

Query: 239 GRVNHAKELFVSMESMG 255
           G +  A ++   M   G
Sbjct: 377 GDMGSAMKVKKKMLEAG 393



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 57/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN+++    K+   +    L   + S  +FPDL+T++ LI+ +CK G       +
Sbjct: 220 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 279

Query: 94  LGRILRSCFTPDVVTFTS-------------------------------------LIKVC 116
             R+ R   +PD+VT+ S                                     L K+C
Sbjct: 280 QDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 339

Query: 117 K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           +                    PD +T NT+I+  CK G +  A ++  KM +  +KP+  
Sbjct: 340 EEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQF 399

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           T+ ++I GFC  ++ + AK    EM+D G  P+  T++ ++D        +    L D +
Sbjct: 400 TFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDEL 459

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + G+  D   Y  L+   C   ++  A+ +F  M+  G
Sbjct: 460 SRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 498



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL I D M R   SP  V+  +++ G   +    +  L L + +   GL P + T++ +
Sbjct: 275 EALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSI 334

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +   C+ G++     +L  +      PD VT  +LI                        
Sbjct: 335 LRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL 394

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK- 175
           KPD  T+  +I G CK   VD AKE   +M D    P+  TY+ ++  + Y  D  EA  
Sbjct: 395 KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSY-YDQDNKEAVI 453

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL  E+  +G+  ++  +  ++  LCK  K++ A  +  LM   G++ D+  Y +L   +
Sbjct: 454 RLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAY 513

Query: 236 CLTGRVNHAKELFVSME 252
              G+   A ++   M+
Sbjct: 514 FKAGKAIAASDMLDEMD 530


>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 95/142 (66%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K+ +P+ I Y+TIIDG+CK   V+ A +L+ +M  K + P+V+TY+++I GFC     N+
Sbjct: 44  KLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVITYSALISGFCIVGKLND 103

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              LF +M  + + P+V TFN+ +D  CK G++ EA  +L +M++HG++P   TYNTL++
Sbjct: 104 TIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMN 163

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+CL   +N AK++F +M   G
Sbjct: 164 GYCLVKEMNMAKDIFNTMNQSG 185



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 73/276 (26%)

Query: 54  TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
             L L +R++   + P++  +S +I+  CK   V+  F +   ++    +PDV+T+++LI
Sbjct: 33  AALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVITYSALI 92

Query: 114 ---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
                                +   PD  T+N  +D  CK+G V +AK +   M    +K
Sbjct: 93  SGFCIVGKLNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIK 152

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLF--------IEMMDQGVQ----------------- 187
           P+VVTY +++ G+C   + N AK +F        ++M+D+ +                  
Sbjct: 153 PSVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSGVVKMIDEAINLYEEMHCRKNIPDVVTY 212

Query: 188 -------------PNVVTFNVIMDE--------------LCKNGKMDEASSLLDLMIQHG 220
                        P+++T+N I+D               LC++GK+ +A  + + ++  G
Sbjct: 213 SSLVDIMHDRGQPPDIITYNSILDGIRPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKG 272

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              D +TY  ++ GFC  G    A  L   ME  GC
Sbjct: 273 YNLDVYTYTVMIQGFCDKGLFKEALALLSKMEDNGC 308



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 41/237 (17%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  + K K  +    L+  + +  + PD+ T+S LI+ FC +G+++    +
Sbjct: 48  PNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVITYSALISGFCIVGKLNDTIGL 107

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++      PDV TF              N  +D  CK+G V +AK +   M    +KP
Sbjct: 108 FNKMTAENINPDVYTF--------------NISVDAFCKEGRVKEAKYVLSMMMKHGIKP 153

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLF--------IEMMDQGVQ-----------PNVVTFN 194
           +VVTY +++ G+C   + N AK +F        ++M+D+ +            P+VVT++
Sbjct: 154 SVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSGVVKMIDEAINLYEEMHCRKNIPDVVTYS 213

Query: 195 VIMDELCKNGKMDEA---SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            ++D +   G+  +    +S+LD     G+RPD +TY   + G C +G++  A+++F
Sbjct: 214 SLVDIMHDRGQPPDIITYNSILD-----GIRPDMYTYTIFIKGLCQSGKLKDARKVF 265



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 36/223 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG--CLAKN-----------------KHYDTVLSL 58
           EA  +   M++ H   P V ++N ++   CL K                  K  D  ++L
Sbjct: 138 EAKYVLSMMMK-HGIKPSVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSGVVKMIDEAINL 196

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           ++ ++     PD+ T+S L++     G+                 PD++T+ S++   +P
Sbjct: 197 YEEMHCRKNIPDVVTYSSLVDIMHDRGQ----------------PPDIITYNSILDGIRP 240

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  TY   I GLC+ G +  A+++F  +  K    +V TYT +I+GFC    + EA  L 
Sbjct: 241 DMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALALL 300

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            +M D G  P+   + +++  L +  + D A  LL  MI  G+
Sbjct: 301 SKMEDNGCIPDAKIYEIVILSLFEKDENDMAEKLLREMIARGL 343



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 46/263 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+ + +F+ M   + +P  V +FNI +    K         +   +   G+ P + T++ 
Sbjct: 102 NDTIGLFNKMTAENINPD-VYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNT 160

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFT-------------------PDVVTFTSLIKVCK 117
           L+N +C +  ++    +   + +S                      PDVVT++SL+ +  
Sbjct: 161 LMNGYCLVKEMNMAKDIFNTMNQSGVVKMIDEAINLYEEMHCRKNIPDVVTYSSLVDIMH 220

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD ITYN+I+DG                     ++P++ TYT  I+G C +    
Sbjct: 221 DRGQPPDIITYNSILDG---------------------IRPDMYTYTIFIKGLCQSGKLK 259

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A+++F +++ +G   +V T+ V++   C  G   EA +LL  M  +G  PDA  Y  ++
Sbjct: 260 DARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALALLSKMEDNGCIPDAKIYEIVI 319

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
                    + A++L   M + G
Sbjct: 320 LSLFEKDENDMAEKLLREMIARG 342


>gi|302791469|ref|XP_002977501.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
 gi|300154871|gb|EFJ21505.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
          Length = 233

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 17/226 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++         D+ L L + + +TG  PD+ T++ LI+  CK G+       
Sbjct: 4   PNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKE------ 57

Query: 94  LGRILRSCF-TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
               +++ F  PDV+T+   +    PD +T++T+++G C  G VD AK L  +M   +  
Sbjct: 58  ----MKAKFCNPDVITYKQAVL---PDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDCS 110

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+V TYTS++ GFC      E +R+   M  +G QPNVVT+  ++D  C+ GK   A  L
Sbjct: 111 PDVYTYTSLVDGFCKVRRLVEVRRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKL 170

Query: 213 LDLMIQHGVRPDAFTYNTL---LDGFCLTGRVNHAKELFVSMESMG 255
           L+ M+ +GV+P+  TY +L   +D  C TGR++   EL  +++  G
Sbjct: 171 LEEMVGNGVQPNVITYRSLIVMMDRLCRTGRMSAVLELLEAIKQSG 216



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 2/142 (1%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+ +TYN++I G C    VD    L  +M      P+++TY ++I G C A    +AK 
Sbjct: 3   EPNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKEMKAKF 62

Query: 177 LFIEMM--DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              +++   Q V P++VTF+ +++  C  G +D+A  LL+ M+     PD +TY +L+DG
Sbjct: 63  CNPDVITYKQAVLPDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDCSPDVYTYTSLVDG 122

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC   R+   + +   M   GC
Sbjct: 123 FCKVRRLVEVRRVLKRMAKRGC 144



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           ++PNVVTY S+I GFC AN  +    L  EM   G  P+++T+N ++D LCK GK  +A 
Sbjct: 2   IEPNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKEMKAK 61

Query: 211 SLLDLMI--QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                +I  +  V PD  T++TL++G+C  G V+ AK L   M +  C
Sbjct: 62  FCNPDVITYKQAVLPDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDC 109



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G++PNVVT+N ++   C   ++D    L++ M   G  PD  TYNTL+DG C  G+   A
Sbjct: 1   GIEPNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKEMKA 60

Query: 245 K 245
           K
Sbjct: 61  K 61



 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G+ P+  TYN+L+ GFC+  RV+    L   M + GC
Sbjct: 1   GIEPNVVTYNSLIHGFCMANRVDSTLLLMEEMTATGC 37


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ML  H   P    + +++    K  +    LS+F+ L++ G+ PD+ T S  
Sbjct: 273 EAAKYFDEMLD-HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 331

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K GRV     V   +      PDV T++SLI               G CKQG V+
Sbjct: 332 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI--------------SGFCKQGEVE 377

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL  +M  K + PN+  Y +++ G C + D   A++LF  M ++G++P+ VT++ ++
Sbjct: 378 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 437

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK+  + EA SL   M   GV+P +F YN L+ G C  G +  A  LF  M   G
Sbjct: 438 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++ CL+K    +   +    +   GL PD  T    I  + K G+++     
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L     P+   +T LI                         PD  T +  I GL K
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 337

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A ++F ++K+K + P+V TY+S+I GFC   +  +A  L  EM  +G+ PN+  
Sbjct: 338 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 397

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK+G +  A  L D M + G+ PD+ TY+T++DG+C +  V  A  LF  M 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 253 SMG 255
           S G
Sbjct: 458 SKG 460



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I+   L + K  +     F+ +  TGL PD    S LI+ F + G +    + 
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE-VLR 66

Query: 94  LGRILRSCFTP-DVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +  ++ SC  P +++T+  LI                       CKP++ T+  +I+G C
Sbjct: 67  IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 126

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++  + +A EL  +M+ +N+ P+ V+Y ++I G C+  D + A +L  +M   G++PNVV
Sbjct: 127 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++      G+++EA  LLD M   GV PD F YN ++      G++  A    + +
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 252 ESMG 255
           +  G
Sbjct: 247 QGRG 250



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 40/272 (14%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M      P  V+ ++ M+    K+++     SLF  + S G+ P  + ++ L++  
Sbjct: 417 LFDGMPEKGLEPDSVT-YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC 475

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK-----------------PDA 120
           CK G +     +   +L+  F    ++F +LI    K CK                 PD 
Sbjct: 476 CKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH 534

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKN-----------------VKPNVVTYTSVIR 163
           +TY T+ID  CK G +++A  LF +M+++N                 VKP+ VTY  VI 
Sbjct: 535 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIY 594

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             C  ++  EA +L  E++ +G+       ++++  LCK   + EAS LLD M + G++P
Sbjct: 595 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 654

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                +TL+  F   G+++ A  +F  ++S+G
Sbjct: 655 SLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 686



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI     +E L I D M+     P  + ++N+++  L K    +    + K + + G 
Sbjct: 58  EGDI-----DEVLRIKDVMVSC-GIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 111

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------- 116
            P+  T  +LI  +C+   +     +L  + +    P  V++ ++I  +C          
Sbjct: 112 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 171

Query: 117 ----------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                     KP+ + Y+T+I G   +G +++A+ L   M    V P++  Y ++I    
Sbjct: 172 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 231

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A    EA    +E+  +G++P+ VTF   +    K GKM EA+   D M+ HG+ P+  
Sbjct: 232 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 291

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y  L++G    G +  A  +F  + ++G
Sbjct: 292 LYTVLINGHFKAGNLMEALSIFRHLHALG 320



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 21/215 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA- 120
           +   GL P+ YT++I+    C+  R++   +    + ++   PD    ++LI     +  
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 121 --------------------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                               ITYN +I GLCK G ++KA E+   M     KPN  T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I G+C  ++   A  L  EM  + + P+ V++  +++ LC    +  A+ LL+ M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++P+   Y+TL+ G+   GR+  A+ L   M   G
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 215



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M +K + PN  TYT +  G C A   NEAK  F EM   G++P+    + ++D   + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +DE   + D+M+  G+  +  TYN L+ G C  G++  A E+   M ++GC
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 111



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 18/234 (7%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+      +A+ +F  ML+         SFN ++    K+        LF+ + +  +
Sbjct: 478 EGDM-----EKAMNLFREMLQ--KGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 530

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV--TFTSLI-KVCKPDAITYN 124
            PD  T++ +I+  CK G++    ++   +       D V   F  ++ K  KPD +TY 
Sbjct: 531 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYG 590

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV----IRGFCYANDWNEAKRLFIE 180
            +I   CK+   D   E F K++D+ V   ++T  ++    I   C   D  EA +L  E
Sbjct: 591 LVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDE 646

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           M + G++P++   + ++    + GKMDEA+ + + +   G+ PD  T   L++G
Sbjct: 647 MGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 700


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 135/279 (48%), Gaps = 37/279 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRL--- 62
           T++  +A  +FD +LR    P P  S N     LA+              ++LF R+   
Sbjct: 50  TLSTEDAHHLFDELLR-QTIPVPERSLNGFFTALARAPSSAACRDGPSLAVALFNRICRE 108

Query: 63  --NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
                   P + T++IL++C C+  R + GF + GR L++    DV+  + L+K      
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAK 168

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM--KDKNVKPNVV 156
                             +PD I+YNT++  LC+     +A +L   M  K     PNVV
Sbjct: 169 RSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVV 228

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY +VI G     + ++A  LF EMM QGV P+VVT+  I+D LCK   MD+A  +L  M
Sbjct: 229 TYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQM 288

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I +G +P+  TYN ++ G+ ++G+      +F  M S G
Sbjct: 289 ISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQG 327



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 24/240 (10%)

Query: 40  NIMLGCLAKNKHYDTVLSLF-KRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +I+L CL   K  D V++L   R+   G+ PD  +++ ++   C+  R      +L  ++
Sbjct: 158 SILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMV 217

Query: 99  RSCF--TPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGF 135
           +     +P+VVT+ ++I          K C            PD +TY +IID LCK   
Sbjct: 218 KKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARA 277

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +DKA+ +  +M     +PN VTY  +I G+  +  W E   +F EM  QG+ PN+VT N 
Sbjct: 278 MDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNS 337

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M  LCK+GK  EA+   D M   G +P+  TY+ LL G+   G       LF SME  G
Sbjct: 338 YMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNG 397



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 17/219 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++    K    D  + +F ++   G+ PD  T+ I+I  F +MGR++          
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADA-------- 456

Query: 99  RSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVV 156
                  +  F  +I +  KP+ I Y+++I G C  G + KAKEL  +M  + + +PN+V
Sbjct: 457 -------MDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIV 509

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            + S+I   C      EA  +F  ++  G +P+V+TFN ++D     GK+++A  +LD M
Sbjct: 510 FFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAM 569

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I  G+ PD  +YNTL+DG+C  GR++    LF  M S G
Sbjct: 570 ISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKG 608



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L +        +LF  +   G+ PD+ T++ +I+  CK   +    +V
Sbjct: 225 PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELV 284

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +++ + F P+ VT+  +I                     +   P+ +T N+ +  LCK
Sbjct: 285 LRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCK 344

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A E F  M  K  KPN+VTY+ ++ G+     + +   LF  M   G+  +   
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRV 404

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN+++D   K G MDE   +   M + GV PDA TY  ++  F   GR+  A + F  M 
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 253 SMG 255
           +MG
Sbjct: 465 AMG 467



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD+++ +   P  V +FN ++         +    +   + S G+ PD+ +++ L
Sbjct: 526 EAHDIFDFVIHIGERPD-VITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTL 584

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ +C+ GR+  G ++ G +L               K  KP  ITY  I+ GL   G   
Sbjct: 585 IDGYCRNGRIDDGLILFGEMLS--------------KGVKPTTITYGIILHGLFNDGRTV 630

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK++  +M +     ++ T   ++ G C  N  +EA  +F ++    V+ N+   N ++
Sbjct: 631 GAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMI 690

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D + K  K +EA  L D +   G+ P+A TY  ++      G V  A  +F  ME  GC
Sbjct: 691 DAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGC 749



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S+  I+LG L +N   D  +++FK+L +  +  ++   + +I+   K+ +         
Sbjct: 648 ISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEA----- 702

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
              +  F  D ++ T L+    P+A TY  +I  L K+G V++A  +F  M+     P+ 
Sbjct: 703 ---KELF--DSISATGLV----PNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSS 753

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
                +IR      +  +A     ++  + +     T +++M    + GK  E   LL  
Sbjct: 754 RLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREGKYWEDVKLLPA 813

Query: 216 MIQ 218
             Q
Sbjct: 814 KYQ 816


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 120/264 (45%), Gaps = 23/264 (8%)

Query: 16  PNEALCIFDYMLRMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
             E     D +  M   P   P  S +N  +  L K+      + + K +      PD+ 
Sbjct: 31  AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVV 90

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T + LI   CK GR+     VL  + RS F  ++VT+ +LI                   
Sbjct: 91  TFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM 150

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNE 173
              PD  TYN II G CK G +D+A     +MK +    P+  TY+ +I G C +++  +
Sbjct: 151 TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRK 210

Query: 174 AKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           A  L  EM+  +    +VV FN ++D  CK   +D A  LL  M++HG  PD  TY+T++
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTII 270

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
           DG C  G V+    L   M S GC
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRGC 294



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L K    D    +   +  +G   +L T++ LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           +  +     TPD  T+ ++I                        C PD  TY+ +I+GLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 132 KQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K   + KA EL  +M   K+   +VV + +++ G+C A D + A+ L   M++ G  P+V
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ I+D LC+ G +D+  +LL+ M+  G +PD  TY  L+ G C  G++  A  L   
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 251 MESMGC 256
           M   GC
Sbjct: 324 MLEDGC 329



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHG 90
           + P   ++N ++    K+   D      + +    G  PD +T+SILIN  CK   +   
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L  ++               K C    + +NT++DG CK   +D+A+EL   M +  
Sbjct: 212 DELLQEMIGR-------------KDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
             P+VVTY+++I G C   D ++   L  +M+ +G +P+VVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            L+  M++ G  P+A TY+ + DG C   +++ A +L  S+   G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           D YT+ +L+   C  G +     +L  + +    P +           P    YN  +  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQ---PGMA----------PTPSMYNFFVHA 63

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G V +A E+   MKD   KP+VVT+ ++I G C A   +EA+++  EM   G   N
Sbjct: 64  LCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +VT+N +++ L   G+  EA  ++  M      PD  TYN ++ GFC +G ++ A     
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFCKSGEIDRAYGFLE 180

Query: 250 SM-ESMGC 256
            M +  GC
Sbjct: 181 EMKQRAGC 188



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 14/133 (10%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V +++ ++  L +    D   +L +++ S G  PD+ T+++L+   CK G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              ++ R+L                 C P+A+TY+ + DGLCK   +D A +L   ++DK
Sbjct: 317 ACRLVKRMLED--------------GCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362

Query: 150 NVKPNVVTYTSVI 162
               +VV + +++
Sbjct: 363 GRVTDVVAFETLL 375


>gi|242069951|ref|XP_002450252.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
 gi|241936095|gb|EES09240.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
          Length = 406

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 59/294 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCL--------AKNKHYDTVLSLFKRLN---ST 65
           ++AL +FD ML  H SP  V++FN +   L        +     + V+SLF R+    S 
Sbjct: 51  DDALKLFDEMLP-HASPASVTAFNQLFTVLFCASSRRSSSTSESELVVSLFNRMVRDCSN 109

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------- 114
            + P+LYT+SILI CFC MG + HGF   G IL++ +  + +  T LIK           
Sbjct: 110 KVAPNLYTYSILIGCFCCMGFLEHGFAAFGLILKTGWRVNDIVITHLIKGLCDAKRVDEA 169

Query: 115 --------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                                C  D ++YNT+I G   +G VDKA  LFL+M    V PN
Sbjct: 170 MNRAEEALELLQMMADCQGRSCPRDVVSYNTVIKGFFNEGQVDKAYSLFLEM---GVSPN 226

Query: 155 VVTYTSVIRGFCYANDWNEAKRL-------------FIEMMDQGVQPNVVTFNVIMDELC 201
           VVTYT++I G C A   ++A  +             ++    +G++P+V  +++++    
Sbjct: 227 VVTYTTIIDGLCKAQSVDKADGVKPDHDTYNCLIHGYLSTRQKGIKPDVTIYSIMLHGYG 286

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G + E    L+LM+ +G+ P+   +NT++  +     ++ A  +F+ M+  G
Sbjct: 287 TKGALSEMHDRLNLMVANGISPNHRIFNTMIYAYAKEAMIDEAMHIFIKMKQQG 340



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 17/165 (10%)

Query: 106 VVTFTSLIKVCK----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
           V  F  +++ C     P+  TY+ +I   C  GF++     F  +     + N +  T +
Sbjct: 97  VSLFNRMVRDCSNKVAPNLYTYSILIGCFCCMGFLEHGFAAFGLILKTGWRVNDIVITHL 156

Query: 162 IRGFCYA-------NDWNEAKRLFIEMMD-QGVQ--PNVVTFNVIMDELCKNGKMDEASS 211
           I+G C A       N   EA  L   M D QG     +VV++N ++      G++D+A S
Sbjct: 157 IKGLCDAKRVDEAMNRAEEALELLQMMADCQGRSCPRDVVSYNTVIKGFFNEGQVDKAYS 216

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           L    ++ GV P+  TY T++DG C    V+ A  +    ++  C
Sbjct: 217 LF---LEMGVSPNVVTYTTIIDGLCKAQSVDKADGVKPDHDTYNC 258



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN M+   AK    D  + +F ++   GL PD  +++ LI+  CK+GRV    +   +++
Sbjct: 313 FNTMIYAYAKEAMIDEAMHIFIKMKQQGLSPDAVSYAELIDALCKLGRVDDAVLQFKQMI 372

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
               TPD V F              N+++ GLC     +K +  F K
Sbjct: 373 NEGVTPDNVVF--------------NSLVYGLCTVDKWEKVENYFSK 405


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 13/219 (5%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    + +  D    L + + S    PD++T+ ILI   C+  R+S    +LG +
Sbjct: 294 TYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTL 353

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                             C P+ ++YNT+IDG  K   V+ A +LFL+M      P+VVT
Sbjct: 354 RNE-------------DDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVT 400

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++IRG C A   +EA     EM+ + + P V  ++ ++  LC+ G++D AS++ D M+
Sbjct: 401 YSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMV 460

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +G +P+   YN+L+ G C TGR+  AK     M   GC
Sbjct: 461 ANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGC 499



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 26/244 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++   +K    +    LF  + + G  PD+ T+S LI   C  GR S     
Sbjct: 361 PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSY 420

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++     P V  ++S+I                       C+P+   YN++I GLCK
Sbjct: 421 LEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCK 480

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  AK    +M ++   P+ VTY ++I G C  +  +EA  L++  ++QG++ +  +
Sbjct: 481 TGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETS 540

Query: 193 FNVIMDEL-CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            NV++  L C    +++A  +L +++  G  P AF Y T+++  C    +  A++L   M
Sbjct: 541 CNVVIASLRC----LEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDM 596

Query: 252 ESMG 255
              G
Sbjct: 597 IGAG 600



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 22/220 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +   +L  L K+ + +  L  F++++S    P   T +ILI+   +  RV      
Sbjct: 158 PVVLTCKFLLNALCKSGNLELALRYFEKMSS---IPCAATWTILIDGLFRAIRVDE---- 210

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +C+  + +  T++     P+  TY  +I+GL K G V +A+ +  +M      P
Sbjct: 211 ------ACYYFEEMKHTAI-----PNNWTYTVVINGLVKAGKVAEAERVLQEMP----VP 255

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            +  YTSVI G C A D  +A  L  +M  +G Q + +T+N ++   C+  ++D A  LL
Sbjct: 256 TLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELL 315

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + M  +   PD FTY+ L+ G C   R++ A++L  ++ +
Sbjct: 316 EEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRN 355



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 23/236 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N     L +    +    LFK      L PD  T+ ILI   C  G++     +  
Sbjct: 90  VHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYE 149

Query: 96  RILRSCFTPDVVTFTSLI-KVCK-----------------PDAITYNTIIDGLCKQGFVD 137
            ++     P V+T   L+  +CK                 P A T+  +IDGL +   VD
Sbjct: 150 EMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDGLFRAIRVD 209

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A   F +MK   + PN  TYT VI G   A    EA+R+  EM      P +  +  ++
Sbjct: 210 EACYYFEEMKHTAI-PNNWTYTVVINGLVKAGKVAEAERVLQEM----PVPTLANYTSVI 264

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              CK G M +A  LL+ M + G + D  TYNTL+ G C    ++ A EL   M+S
Sbjct: 265 GGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKS 320



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 54/274 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ ++  L +    D   ++F  + + G  P+L  ++ LI   CK GR+    + 
Sbjct: 431 PKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLR 490

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK----------------------------------- 117
           +  +     +PD VT+ +LI  +C+                                   
Sbjct: 491 VKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRC 550

Query: 118 -----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                            P A  Y T+I+ LCK+  + +A++L   M    +KP+  T  +
Sbjct: 551 LEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDA 610

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH- 219
           ++   C  +    A     EM+  G +P+V T++ +++ L K GK  EA  +L  +I H 
Sbjct: 611 LVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHT 670

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
              PD   Y  L+  +    +V  A+ +   ++S
Sbjct: 671 SCFPDELWYVGLIAAYSNQDQVEEARNVLQELKS 704



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+ + ++G + +       ++  + +   G  P + T+S L+N   K G+ S   VV
Sbjct: 603 PDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVV 662

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+         ++ TS    C PD + Y  +I     Q  V++A+ +  ++K K    
Sbjct: 663 LRRL---------ISHTS----CFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQ 709

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++V Y ++++G     +      L  EM       N  TFN+++   C+ G+ D A  +L
Sbjct: 710 SIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVL 769

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
             M +  + P A     L+D      R   +K+L
Sbjct: 770 SEM-KKVLTPSAAIIKFLVDELARAEREQESKDL 802



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%)

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           ++ +  V TY              EA RLF E   Q + P+ +T+ +++  LC  GK+  
Sbjct: 84  QDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKL 143

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           A SL + M+  G+RP   T   LL+  C +G +  A   F  M S+ C
Sbjct: 144 ACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPC 191



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 15/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +  ++  L K  +      L + +   G+ PD  T   L+   C+  +       
Sbjct: 568 PTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKA------ 621

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
              ++   F  ++V   S     KP   TY+T+++ L K G   +A  +  ++    +  
Sbjct: 622 ---VVAMAFLEEMVRLGS-----KPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCF 673

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+ + Y  +I  +   +   EA+ +  E+  +    ++V +N ++  L +   +     L
Sbjct: 674 PDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYEL 733

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           L  M ++    +  T+N L+ GFC  G+ + A  +   M+ +
Sbjct: 734 LREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKV 775


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 120/264 (45%), Gaps = 23/264 (8%)

Query: 16  PNEALCIFDYMLRMHPSP---PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
             E     D +  M   P   P  S +N  +  L K+      + + K +      PD+ 
Sbjct: 31  AGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVV 90

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------ 114
           T + LI   CK GR+     VL  + RS F  ++VT+ +LI                   
Sbjct: 91  TFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM 150

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNE 173
              PD  TYN II G CK G +D+A     +MK +    P+  TY+ +I G C +++  +
Sbjct: 151 TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRK 210

Query: 174 AKRLFIEMMD-QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           A  L  EM+  +    +VV FN ++D  CK   +D A  LL  M++HG  PD  TY+T++
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTII 270

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
           DG C  G V+    L   M S GC
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRGC 294



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L K    D    +   +  +G   +L T++ LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 94  LGRILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLC 131
           +  +     TPD  T+ ++I                        C PD  TY+ +I+GLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 132 KQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K   + KA EL  +M   K+   +VV + +++ G+C A D + A+ L   M++ G  P+V
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT++ I+D LC+ G +D+  +LL+ M+  G +PD  TY  L+ G C  G++  A  L   
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 251 MESMGC 256
           M   GC
Sbjct: 324 MLEDGC 329



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS-TGLFPDLYTHSILINCFCKMGRVSHG 90
           + P   ++N ++    K+   D      + +    G  PD +T+SILIN  CK   +   
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L  ++               K C    + +NT++DG CK   +D+A+EL   M +  
Sbjct: 212 DELLQEMIGR-------------KDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
             P+VVTY+++I G C   D ++   L  +M+ +G +P+VVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            L+  M++ G  P+A TY+ + DG C   +++ A +L  S+   G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           D YT+ +L+   C  G +     +L  + +    P +           P    YN  +  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQ---PGMA----------PTPSMYNFFVHA 63

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G V +A E+   MKD   KP+VVT+ ++I G C A   +EA+++  EM   G   N
Sbjct: 64  LCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           +VT+N +++ L   G+  EA  ++  M      PD  TYN ++ GFC +G ++ A     
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFCKSGEIDRAYGFLE 180

Query: 250 SM-ESMGC 256
            M +  GC
Sbjct: 181 EMKQRAGC 188



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 14/133 (10%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V +++ ++  L +    D   +L +++ S G  PD+ T+++L+   CK G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              ++ R+L                 C P+A+TY+ + DGLCK   +D A +L   ++DK
Sbjct: 317 ACRLVKRMLED--------------GCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362

Query: 150 NVKPNVVTYTSVI 162
               +VV + +++
Sbjct: 363 GRITDVVAFEALL 375


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 22/263 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P++AL IF  M  +    P + S+N +L  L ++  +D   S F    + GL P+L T++
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI   C+  +      +L  +    F+PDV ++ +LI                     +
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNE 173
              PD   YN +IDG  K+G +  A E++ ++ K  +V PN+ +Y  +I G C    ++E
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +  ++  M       ++ T++ ++  LC +G +D A+ +   M ++GV PD   YNT+L+
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   GR+    EL+  ME  GC
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC 356



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 117/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++  LAKN +    L LF  +   G+ PD+  ++ILI+ F K G + +   +
Sbjct: 182 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 241

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+L+    P V           P+  +YN +I+GLCK G  D++ E++ +MK      
Sbjct: 242 WERLLKG---PSVY----------PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY+++I G C + + + A R++ EM + GV P+VV +N +++   + G+++E   L 
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +M + G R    +YN L+ G     +V+ A  ++  +    C
Sbjct: 349 KVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDC 390



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 22/237 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M + H   P     N ++    +    +  L  F  + S G FP + T++ 
Sbjct: 446 DEVAGVLDQMTK-HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNT 504

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---------------------SLIKV 115
           LIN   K  R S  + ++  +L   + P+++T++                     +L K 
Sbjct: 505 LINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKG 564

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD   +N II GLC  G V+ A +L+ +MK +   PN+VT+ +++ GF    D+  A 
Sbjct: 565 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERAS 624

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +++  ++  G QP+++++N+ +  LC   ++ +A   L+  +  GV P A T+N L+
Sbjct: 625 KIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++  L +N   D  +S+++ L       D  T+ +L++  CK G ++    +L 
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 418

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
                    D   ++S+I                       CKP+    N +I+G  +  
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRAS 478

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A   F  M  K   P VVTY ++I G   A  ++EA  L  EM+ +G +PN++T++
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++M+ LC+  K+D A +L    ++ G +PD   +N ++ G C +G+V  A +L+  M+  
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 255 GC 256
            C
Sbjct: 599 KC 600



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 21/219 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV---------- 87
           ++ +++  L KN + +  LS+ +   +     D + +S +IN  C+ GR+          
Sbjct: 396 TYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM 455

Query: 88  -SHGF--------VVLGRILRSCFTPDVVTF--TSLIKVCKPDAITYNTIIDGLCKQGFV 136
             HG          V+   +R+    D + F    + K C P  +TYNT+I+GL K    
Sbjct: 456 TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF 515

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  +M  K  KPN++TY+ ++ G C     + A  L+ + +++G +P+V   N+I
Sbjct: 516 SEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 575

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +  LC +GK+++A  L   M Q    P+  T+NTL++GF
Sbjct: 576 IHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLI------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           SH   V   IL+  F P +V   S I      + CK       T+I    K    D+A +
Sbjct: 40  SHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALD 99

Query: 142 LFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +F +M +    +P + +Y S++     +N W+EA+  F+     G+ PN+ T+N+++   
Sbjct: 100 IFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKIS 159

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+  + D+A  LL+ M + G  PD F+Y TL++     G ++ A +LF  M   G
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERG 214



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 94/194 (48%), Gaps = 21/194 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L+K + +    +L K +   G  P++ T+S+L+N  C+  ++     +
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNL 556

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             + L   F PDV     +I                     + C P+ +T+NT+++G  K
Sbjct: 557 WCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               ++A +++  +     +P++++Y   ++G C  +  ++A     + +D+GV P  +T
Sbjct: 617 VRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAIT 676

Query: 193 FNVIMDELCKNGKM 206
           +N+++  +  NG +
Sbjct: 677 WNILVRAVLDNGAL 690


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI   CK                    P+ + + T+IDG C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 241

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 301

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ   R D   Y  L+ G C  GR   A+++   M
Sbjct: 302 TYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREM 361

Query: 252 ESMG 255
            S+G
Sbjct: 362 LSVG 365



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++    K    D    LF  +   GL P+    + LI+  CK GRV     +
Sbjct: 193 PDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEI 252

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 253 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCK 312

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N + + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 313 EGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDART 372

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 373 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  +      +
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 217

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ V FT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 218 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ +  + + V 
Sbjct: 278 KGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVX 337

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC  G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 338 YTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 397

Query: 253 SMG 255
             G
Sbjct: 398 RDG 400



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 21/238 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G +  
Sbjct: 84  HKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJ 143

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              V   I +    P VV++ +L+                        +PD  TY+ +I+
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+   D A ELF +M  K + PN V +T++I G C     + A  ++ +M+ Q + P
Sbjct: 204 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A E
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFE 321



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +    +        T   V+        +     
Sbjct: 52  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 172 RLGDLDEGFRLKSAMLASG 190


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 22/263 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P++AL IF  M  +    P + S+N +L  L ++  +D   S F    + GL P+L T++
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI   C+  +      +L  +    F+PDV ++ +LI                     +
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNE 173
              PD   YN +IDG  K+G +  A E++ ++ K  +V PN+ +Y  +I G C    ++E
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 273

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +  ++  M       ++ T++ ++  LC +G +D A+ +   M ++GV PD   YNT+L+
Sbjct: 274 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   GR+    EL+  ME  GC
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC 356



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 117/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++  LAKN +    L LF  +   G+ PD+  ++ILI+ F K G + +   +
Sbjct: 182 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 241

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+L+    P V           P+  +YN +I+GLCK G  D++ E++ +MK      
Sbjct: 242 WERLLKG---PSVY----------PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY+++I G C + + + A R++ EM + GV P+VV +N +++   + G+++E   L 
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +M + G R    +YN L+ G     +V+ A  ++  +    C
Sbjct: 349 KVMEKEGCRT-VVSYNILIRGLFENAKVDEAISIWELLPEKDC 390



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++  L +N   D  +S+++ L       D  T+ +L++  CK G ++    +L 
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 418

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
                    D   ++S+I                       CKP+    N +I+G  +  
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRAS 478

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A   F  M  K   P VVTY ++I G   A  ++EA  L  EM+ +G +PN++T++
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++M+ LC+  K+D A +L    ++ G +PD   +N ++ G C +G+V  A +L+  M+  
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 255 GC 256
            C
Sbjct: 599 KC 600



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 21/219 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV---------- 87
           ++ +++  L KN + +  LS+ +   +     D + +S +IN  C+ GR+          
Sbjct: 396 TYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM 455

Query: 88  -SHGF--------VVLGRILRSCFTPDVVTF--TSLIKVCKPDAITYNTIIDGLCKQGFV 136
             HG          V+   +R+    D + F    + K C P  +TYNT+I+GL K    
Sbjct: 456 TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF 515

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  +M  K  KPN++TY+ ++ G C     + A  L+ + +++G +P+V   N+I
Sbjct: 516 SEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 575

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +  LC +GK+++A  L   M Q    P+  T+NTL++GF
Sbjct: 576 IHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLI------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           SH   V   IL+  F P +V   S I      + CK       T+I    K    D+A +
Sbjct: 40  SHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALD 99

Query: 142 LFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +F +M +    +P + +Y S++     +N W+EA+  F+     G+ PN+ T+N+++   
Sbjct: 100 IFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKIS 159

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+  + D+A  LL+ M + G  PD F+Y TL++     G ++ A +LF  M   G
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERG 214



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 15/202 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M + H   P     N ++    +    +  L  F  + S G FP + T++ 
Sbjct: 446 DEVAGVLDQMTK-HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNT 504

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN   K  R S  + ++  +L               K  KP+ ITY+ +++GLC+   +
Sbjct: 505 LINGLSKAERFSEAYALVKEMLH--------------KGWKPNMITYSLLMNGLCQGKKL 550

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A  L+ +  +K  KP+V  +  +I G C +    +A +L+ EM  +   PN+VT N +
Sbjct: 551 DMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTL 610

Query: 197 MDELCKNGKMDEASSLLDLMIQ 218
           M+   K    + AS + D ++Q
Sbjct: 611 MEGFYKVRDFERASKIWDHILQ 632


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  +T    EA+ +F  M R     P V + N ++G L K         +F  +   G  
Sbjct: 300 GYSSTGQWKEAVRVFKEM-RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD+++++I++N +   G +     +   +L     P + TF  LIK              
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 418

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    KP  +TY T+I  LC+ G +D A E F +M D+ V P+   Y  +I+GFC 
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +AK L  E+M+ G++ ++V F  I++ LCK G++ +A ++ DL +  G+ PDA  
Sbjct: 479 HGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVV 538

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN L+DG+CL G++  A  +F +M S G
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAG 566



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 126/296 (42%), Gaps = 63/296 (21%)

Query: 16  PNEALCIFDYMLRMHPSP----PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           P  A+ +F+        P    P   ++ I++ C  +    +  L+ F +L  TGL  D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 72  YTHSILINCFCKMGRVSHGF-VVLGRILRSCFTPDVVTFTSLIK---------------- 114
              S L+  FC+  R      ++L R       PDV ++  L+K                
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLR 208

Query: 115 -------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                  VC PD + YNT+IDG  K+G V+KA +LF +M  + + P++VTY+SV+   C 
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK 268

Query: 168 A-----------------------------------NDWNEAKRLFIEMMDQGVQPNVVT 192
           A                                     W EA R+F EM  Q + P+VV 
Sbjct: 269 ARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVA 328

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            N +M  LCK GK+ EA  + D M   G  PD F+Y  +L+G+   G +    +LF
Sbjct: 329 LNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF 384



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 37/276 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P EA  + D + R   +P      N  L  LA+              ++LF R  S 
Sbjct: 44  TLRPEEAHDLLDELQR-RGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASR 102

Query: 66  G-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
                 L P  YT++IL++C  +  R        G++LR+    D +  + L+K      
Sbjct: 103 AQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAK 162

Query: 115 ----------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVV 156
                            C PD  +YN ++  LC QG   +A +L   M +      P+VV
Sbjct: 163 RTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVV 222

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            Y +VI GF    D N+A  LF EM+ +G+ P++VT++ ++  LCK   MD+A + L  M
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  GV PD +TYN L+ G+  TG+   A  +F  M 
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 318



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ IF+ M R H   P V ++  ++  L +    D  +  F ++   G+ PD Y +  
Sbjct: 413 DKAMIIFNEM-RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC  G +     ++  I+ +    D+V F S              II+ LCK G V
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS--------------IINNLCKLGRV 517

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ +F    +  + P+ V Y  ++ G+C      +A R+F  M+  G++PNVV +  +
Sbjct: 518 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CK G++DE  SL   M+Q G++P    YN ++DG    GR   AK  F  M   G
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+ IML   A       +  LF  +   G+ P + T ++L
Sbjct: 344 EARDVFDTMA-MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVL 402

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      P VVT+ ++I  +C+                   
Sbjct: 403 IKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD   Y+ +I G C  G + KAKEL  ++ +  ++ ++V + S+I   C      +A+ 
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F   ++ G+ P+ V +N++MD  C  GKM++A  + D M+  G+ P+   Y TL++G+C
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR++    LF  M   G
Sbjct: 583 KIGRIDEGLSLFREMLQKG 601



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IFD  + +   P  V  +N+++         +  L +F  + S G+ P++  +  L
Sbjct: 519 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +N +CK+GR+  G  +   +L+              K  KP  I YN IIDGL + G   
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQ--------------KGIKPSTILYNIIIDGLFEAGRTV 623

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK  F +M +  +  N  TY+ V+RG      ++EA  LF E+    V+ +++T N ++
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 683

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             + +  +++EA  L   + + G+ P A TY+ ++      G V  A+++F SM++ GC
Sbjct: 684 AGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 742



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 70/303 (23%)

Query: 17  NEALCIFDYMLRMHPSP-----PPVSSFNIMLGCL---AKNKHYDTVLSLFKRLNSTGLF 68
           +EAL I      +H +P     P V S+NI+L  L    K+   D +L +      T   
Sbjct: 165 DEALDIL-----LHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAE-GGTVCS 218

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK---------- 117
           PD+  ++ +I+ F K G V+    +   +++    PD+VT++S++  +CK          
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 118 ----------PDAITYNTIIDG-----------------------------------LCK 132
                     PD  TYN +I G                                   LCK
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+++F  M  K   P+V +YT ++ G+       +   LF  M+  G+ P + T
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 398

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV++      G +D+A  + + M  HGV+P   TY T++   C  G+++ A E F  M 
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 253 SMG 255
             G
Sbjct: 459 DQG 461



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 22/244 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD M+     P  V  +  ++    K    D  LSLF+ +   G+ P    ++I
Sbjct: 553 EKALRVFDAMVSAGIEPN-VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611

Query: 77  LINCFCKMGRV--------------------SHGFVVLGRILRSCFTPDVVTFTSLIKV- 115
           +I+   + GR                     ++  V+ G     CF   +  F  L  + 
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            K D IT NT+I G+ +   V++AK+LF  +    + P  VTY+ +I          EA+
Sbjct: 672 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAE 731

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M + G +P+    N ++ EL K  ++  A + L  + +     +  T   L+D F
Sbjct: 732 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 791

Query: 236 CLTG 239
              G
Sbjct: 792 SSKG 795



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I+L  L KN+ +D  + LFK L +  +  D+ T + +I    +  RV     +   I
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 702

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P           C   A+TY+ +I  L K+G V++A+++F  M++   +P+   
Sbjct: 703 SRSGLVP-----------C---AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 748

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
              V+R     N+   A     ++ ++      +T  +++D     G   E    L
Sbjct: 749 LNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           FDY  +M      P VS++N+++  L  +   D    + K ++  GL PD  T++ILIN 
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PD 119
           +C+ G V   F +   ++     P  VT+TSLI V                       PD
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
            I +N +IDG C  G +D+A  +  +M    V P+ VT+ ++++G C       A+ L  
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIE 495

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM  +G++P+ +++N ++    K G M +A  + D M+  G  P   TYN L+ G C   
Sbjct: 496 EMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555

Query: 240 RVNHAKELFVSMESMG 255
             +HA++L   M S G
Sbjct: 556 EGDHAEQLLKEMISKG 571



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  IFD M +     P   ++   +  + K    +    + +++   GL P   T++ LI
Sbjct: 245 ARMIFDLM-KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----CK----------------- 117
           + +C  G +   F    +++R    P V T+  LI      CK                 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD++TYN +I+G C+ G V KA  L  +M  K ++P  VTYTS+I          +A  L
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDL 423

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +++ +G+ P+++ FN ++D  C NG MD A ++L  M Q  V PD  T+NTL+ G C 
Sbjct: 424 FEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCR 483

Query: 238 TGRVNHAKELFVSMESMG 255
            G+V  A+EL   M+S G
Sbjct: 484 EGKVEAARELIEEMKSRG 501



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  ++  M RM      V +FNIM+  L K             + + G+ P++ T++ 
Sbjct: 173 EKAWVLYAEMFRMRIKSS-VVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNT 231

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+ +C  GRV    ++    L  C            +  KPD+ TY + I G+CK+G +
Sbjct: 232 IIHGYCSRGRVEGARMIFD--LMKC------------RGVKPDSYTYGSFISGMCKEGKL 277

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A  +  KMK+  ++P  VTY ++I G+C   +   A     +M+ +G+ P V T+N++
Sbjct: 278 EEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNML 337

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L  + KMDEA  ++  M + G+ PD+ TYN L++G+C  G V  A  L   M S G
Sbjct: 338 IHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKG 396



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 14/206 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +++++    + K  D     F  +   G+ P ++  + +++ F K  R    +V+   + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R      VVTF              N +I+ LCK+G + KAKE    M+   +KPNVVTY
Sbjct: 184 RMRIKSSVVTF--------------NIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTY 229

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I G+C       A+ +F  M  +GV+P+  T+   +  +CK GK++EAS +L+ M +
Sbjct: 230 NTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKE 289

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHA 244
            G+RP A TYNTL+DG+C  G +  A
Sbjct: 290 IGLRPTAVTYNTLIDGYCNKGNLEMA 315



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 76/135 (56%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + Y+ +I   C+    D A E F  MK K V P+V     ++  F  +N   +A  L+ E
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M    ++ +VVTFN++++ LCK GK+ +A   + LM   G++P+  TYNT++ G+C  GR
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 241 VNHAKELFVSMESMG 255
           V  A+ +F  M+  G
Sbjct: 242 VEGARMIFDLMKCRG 256


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   FD ML  H   P    + +++    K  +    LS+F+ L++ G+ PD+ T S  
Sbjct: 472 EAAKYFDEMLD-HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 530

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K GRV     V   +      PDV T++SLI               G CKQG V+
Sbjct: 531 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI--------------SGFCKQGEVE 576

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL  +M  K + PN+  Y +++ G C + D   A++LF  M ++G++P+ VT++ ++
Sbjct: 577 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 636

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK+  + EA SL   M   GV+P +F YN L+ G C  G +  A  LF  M   G
Sbjct: 637 DGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++ CL+K    +   +    +   GL PD  T    I  + K G+++     
Sbjct: 417 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L     P+   +T LI                         PD  T +  I GL K
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 536

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A ++F ++K+K + P+V TY+S+I GFC   +  +A  L  EM  +G+ PN+  
Sbjct: 537 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 596

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK+G +  A  L D M + G+ PD+ TY+T++DG+C +  V  A  LF  M 
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656

Query: 253 SMG 255
           S G
Sbjct: 657 SKG 659



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA   F+ M +    P   ++ + ++    +    D VL +   + S G+  +L T+++
Sbjct: 226 NEAKLTFEEMQKTGLKPD-YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 284

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK G++     +L  ++     P+  TF  LI+  C+                  
Sbjct: 285 LIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 344

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P A++Y  +I+GLC    +  A +L  KM    +KPNVV Y+++I G+       EA+
Sbjct: 345 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEAR 404

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M   GV P++  +N I+  L K GKM+EAS+ L  +   G++PDA T+   + G+
Sbjct: 405 RLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 464

Query: 236 CLTGRVNHAKELFVSMESMG 255
             TG++  A + F  M   G
Sbjct: 465 SKTGKMTEAAKYFDEMLDHG 484



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I+   L + K  +     F+ +  TGL PD    S LI+ F + G +    + 
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE-VLR 265

Query: 94  LGRILRSCFTP-DVVTFTSLIK---------------------VCKPDAITYNTIIDGLC 131
           +  ++ SC  P +++T+  LI                       CKP++ T+  +I+G C
Sbjct: 266 IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 325

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++  + +A EL  +M+ +N+ P+ V+Y ++I G C+  D + A +L  +M   G++PNVV
Sbjct: 326 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 385

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++      G+++EA  LLD M   GV PD F YN ++      G++  A    + +
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445

Query: 252 ESMG 255
           +  G
Sbjct: 446 QGRG 449



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++  L K+        LF  +   GL PD  T+S +I+ +CK   V+  F +
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDA--------------------ITYNTIIDGLCKQ 133
              +      P    + +L+  C  +                     +++NT+IDG CK 
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 711

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             + +A +LF +M  K + P+ VTYT+VI   C A    EA  LF EM ++ +  + VT+
Sbjct: 712 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 771

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
             +M    K G+  E  +L + M+  GV+PD  TY  ++   C
Sbjct: 772 TSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 814



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 63/303 (20%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI       A  +FD M      P  V+ ++ M+    K+++     SLF  + S G+ 
Sbjct: 608 GDI-----QRARKLFDGMPEKGLEPDSVT-YSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 661

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK------- 117
           P  + ++ L++  CK G +     +   +L+  F    ++F +LI    K CK       
Sbjct: 662 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQL 720

Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                     PD +TY T+ID  CK G +++A  LF +M+++N+  + VTYTS++ G+  
Sbjct: 721 FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK 780

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIM----------------DE------------ 199
               +E   LF +M+ +GV+P+ VT+ +++                DE            
Sbjct: 781 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 840

Query: 200 -------LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
                  LCK   + EAS LLD M + G++P     +TL+  F   G+++ A  +F  ++
Sbjct: 841 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 900

Query: 253 SMG 255
           S+G
Sbjct: 901 SLG 903



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI     +E L I D M+     P  + ++N+++  L K    +    + K + + G 
Sbjct: 257 EGDI-----DEVLRIKDVMVSCGI-PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 310

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------- 116
            P+  T  +LI  +C+   +     +L  + +    P  V++ ++I  +C          
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 117 ----------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                     KP+ + Y+T+I G   +G +++A+ L   M    V P++  Y ++I    
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A    EA    +E+  +G++P+ VTF   +    K GKM EA+   D M+ HG+ P+  
Sbjct: 431 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 490

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y  L++G    G +  A  +F  + ++G
Sbjct: 491 LYTVLINGHFKAGNLMEALSIFRHLHALG 519



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D+VL  F+  N  G  P ++   ILI+ + +MG +     V            ++   SL
Sbjct: 142 DSVLFWFR--NYGGSSPVVF--DILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL 197

Query: 113 IKVCK----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
             + +    P+  TY  I  GLC+   +++AK  F +M+   +KP+    +++I GF   
Sbjct: 198 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 257

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
            D +E  R+   M+  G+  N++T+NV++  LCK GKM++A+ +L  MI  G +P++ T+
Sbjct: 258 GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 317

Query: 229 NTLLDGFCLTGRVNHAKELFVSME 252
             L++G+C    +  A EL   ME
Sbjct: 318 CLLIEGYCREHNMGRALELLDEME 341



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 18/154 (11%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFL------------------KMKDKNVKPNVVTYTSVI 162
           + ++ +ID   + G +D+A  +F                    M +K + PN  TYT + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            G C A   NEAK  F EM   G++P+    + ++D   + G +DE   + D+M+  G+ 
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +  TYN L+ G C  G++  A E+   M ++GC
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 310



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 36/252 (14%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+      +A+ +F  ML+         SFN ++    K+        LF+ + +  +
Sbjct: 677 EGDM-----EKAMNLFREMLQ--KGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQI 729

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD  T++ +I+  CK G++    ++   +       D VT+TSL+              
Sbjct: 730 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFA 789

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV----I 162
                  K  KPD +TY  +I   CK+   D   E F K++D+ V   ++T  ++    I
Sbjct: 790 LFEKMVAKGVKPDEVTYGLVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLI 845

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
              C   D  EA +L  EM + G++P++   + ++    + GKMDEA+ + + +   G+ 
Sbjct: 846 TALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV 905

Query: 223 PDAFTYNTLLDG 234
           PD  T   L++G
Sbjct: 906 PDTTTLIDLVNG 917



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 22/222 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M+     P  V+ +  ++    K    +    LFK +    L  D  T++ 
Sbjct: 715 QEASQLFQEMIAKQIMPDHVT-YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTS 773

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAIT------------- 122
           L+  + K+G+ S  F +  +++     PD VT+  +I   CK D +              
Sbjct: 774 LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 833

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  ++ +I  LCK+  + +A +L  +M +  +KP++   ++++R F  A   +EA 
Sbjct: 834 MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 893

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           R+F  +   G+ P+  T   +++    +   ++A +L+  ++
Sbjct: 894 RVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L KN        +++++   G+FP+LYT++ ++N  CK GR    F +   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                + ++VT+ +LI  +C+                    P+ ITYNT+IDG C  G +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA  L   +K + + P++VTY  ++ GFC   D + A ++  EM ++G++P+ +T+ ++
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTIL 414

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D   +   M++A  L   M + G+ PD  TY+ L+ GFC+ G++N A  LF  M
Sbjct: 415 IDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLM 469



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 21/207 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------- 116
           D+Y+  I+I   C+ G +   F +L  +    F+P+VV +T+LI  C             
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 117 --------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                     +  TY  +I GL K G   +  E++ KM++  V PN+ TY  V+   C  
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               +A +LF EM ++GV  N+VT+N ++  LC+  K +EA+ ++D M   G+ P+  TY
Sbjct: 282 GRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITY 341

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           NTL+DGFC  G++  A  L   ++S G
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRG 368



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 15/235 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M R       + ++N ++G L +    +    +  ++ S G+ P+L T++ L
Sbjct: 286 DAFKLFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTL 344

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FC +G+       LG+ L  C   D+ +     +   P  +TYN ++ G CK+G   
Sbjct: 345 IDGFCGVGK-------LGKALSLC--RDLKS-----RGLSPSLVTYNILVSGFCKKGDTS 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A ++  +M+++ +KP+ +TYT +I  F   ++  +A +L   M + G+ P+V T++V++
Sbjct: 391 GAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLI 450

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
              C  G+M+EAS L  LM+   + P+   YNT++ G+C  G    A  LF  ME
Sbjct: 451 HGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREME 505



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 23  FDYMLRMHP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           FD ++ +     SP  V    ++ GC  K    +    LF  +   GL  + +T+++LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGC-CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
              K G    GF +  ++      P++ T              YN +++  CK G    A
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEDGVFPNLYT--------------YNCVMNQHCKDGRTKDA 287

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            +LF +M+++ V  N+VTY ++I G C     NEA ++  +M   G+ PN++T+N ++D 
Sbjct: 288 FKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDG 347

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            C  GK+ +A SL   +   G+ P   TYN L+ GFC  G  + A ++   ME  G
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 22/231 (9%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           +  NEA  + D M +     P + ++N ++            LSL + L S GL P L T
Sbjct: 317 MKANEANKVMDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVT 375

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           ++IL++ FCK G  S    V+  +      P  +T+T LI                    
Sbjct: 376 YNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPME 435

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD  TY+ +I G C +G +++A  LF  M  K ++PN V Y +++ G+C      
Sbjct: 436 ELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSY 495

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
            A RLF EM ++ + PNV ++  +++ LCK  K  EA  L++ MI  G+ P
Sbjct: 496 RALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDP 546



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 92  VVLGRILRSCFTPD-VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           V+ G+I    FT   ++ + +  +  +  +  Y  +I+   +   +D +   F +M DK 
Sbjct: 65  VISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKG 124

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
             P    + +++     ++ +N+  R F E   + V  +V +F +++   C+ G+++++ 
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIK-VDLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  + + G  P+   Y TL+DG C  G +  AK+LF  M   G
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFG 228


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 21/249 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R H    P+     +L  + K     T+   +  +   G   ++Y  +IL+N FCK G +
Sbjct: 197 RKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNI 256

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTI 126
           S    V   I +    P VV+F +LI   CK                    PD  TY+ +
Sbjct: 257 SDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSAL 316

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+ LCK+  +D A  LF +M  + + PN V +T++I G     + +  K  + +M+ +G+
Sbjct: 317 INALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGL 376

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           QP++V +N +++  CKNG +  A +++D MI+ G+RPD  TY TL+DGFC  G V  A E
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALE 436

Query: 247 LFVSMESMG 255
           +   M+  G
Sbjct: 437 IRKEMDQNG 445



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG+I+     +A  +FD + +     P V SFN ++    K  + D    L  ++  +  
Sbjct: 253 EGNIS-----DAQKVFDEITK-RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD++T+S LIN  CK  ++     +   + +    P+ V FT+LI              
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKE 366

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  K  +PD + YNT+++G CK G +  A+ +   M  + ++P+ +TYT++I GFC
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC 426

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D   A  +  EM   G++ + V F+ ++  +CK G++ +A   L  M++ G++PD  
Sbjct: 427 RGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDV 486

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  ++D FC  G      +L   M+S G
Sbjct: 487 TYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515



 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 22/237 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD M +    P  V  F  ++   ++N   D +   ++++ S GL PD+  ++ L+
Sbjct: 329 AHGLFDEMCKRGLIPNDVI-FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLV 387

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------- 118
           N FCK G +     ++  ++R    PD +T+T+LI   C+                    
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIE 447

Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            D + ++ ++ G+CK+G V  A+    +M    +KP+ VTYT ++  FC   D     +L
Sbjct: 448 LDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKL 507

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             EM   G  P+VVT+NV+++ LCK G+M  A  LLD M+  GV PD  TYNTLL+G
Sbjct: 508 LKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N+++G L + +  D  + L + +   GL PDLYT+ ILIN FC   R     ++
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307

Query: 94  LGRILRSCFTPDVVTFTSLIK-------------------VCKPDA--ITYNTIIDGLCK 132
           L  ++     P+ +T+ +LI                     C  +A  I +NT+++G+CK
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++KA E+  +M +K V+P+  TY+ +I G C   +   A  L  EM  + + P V+T
Sbjct: 368 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++VI++ LC+ G +   +++L  M+ +G++P+A  Y TL+      GRV  ++ +   M 
Sbjct: 428 YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMR 487

Query: 253 SMG 255
             G
Sbjct: 488 EQG 490



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 21/244 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG++T     EA  +F ++L        V ++++++  L++N        +F  L   GL
Sbjct: 578 EGNVT-----EAFSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 631

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ LI+  CK G V     +L  +      PD+VT              YN +I
Sbjct: 632 LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT--------------YNILI 677

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DGLCK G +++AK LF  ++ + + PN VTY +++ G+C + +   A +L  EM+ +GV 
Sbjct: 678 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP 737

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+   +NVI++  CK  K ++A  L   M++ G      ++NTL++G+C +G++  A  L
Sbjct: 738 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHL 796

Query: 248 FVSM 251
              M
Sbjct: 797 LEEM 800



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S N +LG L K    +    +F  + +  + PD+YT++ +I+  CK+G V     V
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +                K C P+ +TYN II GLC+   +D+A EL   M DK + P
Sbjct: 238 LLEMGE--------------KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVP 283

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY  +I GFC      EAK + +EM+D G++P  +T+N ++D   + G +++A  + 
Sbjct: 284 DLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIK 343

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M+  G+  +   +NTLL+G C  G++  A E+   M   G
Sbjct: 344 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++   +   +K    +     F  + S G+ P++  ++ LI   CK G V+  F V
Sbjct: 528 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV 587

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              IL      DV T++ LI                     K   P+A TYN++I G CK
Sbjct: 588 FRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 647

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG VDKA +L  +M  K + P++VTY  +I G C A +   AK LF ++  +G+ PN VT
Sbjct: 648 QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 707

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  CK+     A  LL+ M+  GV PDAF YN +L+  C   +   A +LF  M 
Sbjct: 708 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 767

Query: 253 SMG 255
             G
Sbjct: 768 EKG 770



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 20/234 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++  L K    +   +LF  +   GL P+  T++ +++ +CK    +  F +
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPD--------------------AITYNTIIDGLCKQ 133
           L  +L     PD   +  ++  C  +                     +++NT+I+G CK 
Sbjct: 728 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKS 787

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  L  +M +K   PN VTYTS+I   C A    EAKRL++EM ++ V P   T+
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
             ++      G M E S+L + M+  G+ PD  TY  ++D +C  G V  A +L
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 901



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 21/248 (8%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M+   P    +  ++   AK    +    + +R+   G+ PD++ ++ LI  FCK  R+ 
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTII 127
                L  +L     P+  T+ + I                         P+   Y  +I
Sbjct: 513 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +G CK+G V +A  +F  +  + V  +V TY+ +I G       +EA  +F E+ ++G+ 
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN  T+N ++   CK G +D+AS LL+ M   G+ PD  TYN L+DG C  G +  AK L
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 248 FVSMESMG 255
           F  +E  G
Sbjct: 693 FDDIEGRG 700



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L +  +     ++ + +   GL P+   ++ L+    K GRV    ++
Sbjct: 423 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 482

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R+      PDV  + SLI                     +  +P+A TY   IDG  K
Sbjct: 483 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A   F +M    V PNV  YT++I G C   +  EA  +F  ++ + V  +V T
Sbjct: 543 AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT 602

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++V++  L +NGKM EA  +   + + G+ P+AFTYN+L+ G C  G V+ A +L   M
Sbjct: 603 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 16/229 (6%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   +  P  A  + + ML +   PP    +N++L    K + ++  L LF+ +   G 
Sbjct: 713 DGYCKSKNPTAAFQLLEEML-LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG- 770

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
           F    + + LI  +CK G++     +L  ++   F P+ VT+TSLI              
Sbjct: 771 FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI-------------- 816

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D  CK G + +AK L+L+M+++NV P   TYTS++ G+    + +E   LF EM+ +G++
Sbjct: 817 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIE 876

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           P+ +T+ V++D  C+ G + EA  L D ++  G+      Y+ L+   C
Sbjct: 877 PDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALC 925



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 123/260 (47%), Gaps = 23/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  IF   L+     P   ++N ++    K  + D    L + +   G+ PD+ T++I
Sbjct: 617 HEAFGIFSE-LQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI 675

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK G +     +   I     TP+ VT+ +++   CK                  
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA  YN I++  CK+   +KA +LF +M +K    + V++ ++I G+C +    EA 
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 794

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM+++   PN VT+  ++D  CK G M EA  L   M +  V P A TY +LL G+
Sbjct: 795 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G ++    LF  M + G
Sbjct: 855 HNIGNMSEVSALFEEMVAKG 874



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M   H   P V ++  M+    K  +      +   +   G  P+L T++++I   
Sbjct: 202 VFDGMC-AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGL 260

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           C+   +         + RS     +V          PD  TY+ +I+G C +    +AK 
Sbjct: 261 CRARLLDEAI----ELKRSMVDKGLV----------PDLYTYDILINGFCMEKRSREAKL 306

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           + L+M D  +KP  +TY ++I GF    D  +A R+  EM+  G++ N++ +N +++ +C
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           K GKM++A  ++  M++ GV PD+ TY+ L++G C    +  A EL   M+
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 82/139 (58%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  ++ N+++  L K   V+   ++F  M    V P+V TYT++I   C   +  +AKR
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           + +EM ++G  PN+VT+NVI+  LC+   +DEA  L   M+  G+ PD +TY+ L++GFC
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 237 LTGRVNHAKELFVSMESMG 255
           +  R   AK + + M  +G
Sbjct: 297 MEKRSREAKLMLLEMIDVG 315



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 97  ILRSCFTPDVVTFTSLIKVCK-----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I+R+  +P +    S++K  +     P+++ ++ ++D   K GF+ +A  +FL  K+   
Sbjct: 118 IIRNSDSP-LAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEF 176

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P++++  S++      N      ++F  M    V P+V T+  ++   CK G + +A  
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +L  M + G  P+  TYN ++ G C    ++ A EL  SM   G
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG 280



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           N  PN V +  ++  +       EA  +F+   +   +P++++ N ++ +L K  K++  
Sbjct: 140 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 199

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             + D M  H V PD +TY  ++   C  G V  AK + + M   GC
Sbjct: 200 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGC 246



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P   ++  +L       +   V +LF+ + + G+ PD  T+ ++I+ +C+ G V      
Sbjct: 842  PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV------ 895

Query: 94   LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                + +C   D +    L+K        Y+ +I  LCK+    +  +L  ++ +   + 
Sbjct: 896  ----MEACKLKDEI----LVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRL 947

Query: 154  NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
             + T + + RGF  A + +EA  +   M+  G   N  +   ++D        +++ +LL
Sbjct: 948  GLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLL 1007

Query: 214  DLM 216
              M
Sbjct: 1008 KQM 1010


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+++T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK+G +D A      MIQ   R D   Y  L+ G C  G+   A+++   M
Sbjct: 319 TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A E   +M  +N + + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 DGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 234

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 235 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ +  + + V 
Sbjct: 295 KGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVV 354

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 355 YTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 253 SMG 255
             G
Sbjct: 415 RDG 417



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 69  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 22/254 (8%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           + ++ +EA  + + +L  H     V+S+N +   L++    D +  LFK + + G+ P+L
Sbjct: 132 SCVSSHEARFVLN-LLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNL 190

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------ 113
            + + ++N  CK+G V         +++  F  D  T+TSLI                  
Sbjct: 191 ISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEI 250

Query: 114 ---KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
              + C  + ++Y  +I G C+ G +D+A ELF +MK+    P+V TYT ++  FC    
Sbjct: 251 MPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK 310

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
             EA + F EM++ G++PNV T+ V++D  CK GKMDE   +L  M++ G+      +N 
Sbjct: 311 ETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370

Query: 231 LLDGFCLTGRVNHA 244
           L+DG+C  G +  A
Sbjct: 371 LIDGYCKRGMMEDA 384



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+C+ D M +++   P   ++N ++    + K  D  ++L  ++    L P+L T++ L
Sbjct: 383 DAICVLDSM-KLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTL 441

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK   V   + +   +++  F PD  TF + I              D LCK G V+
Sbjct: 442 IHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFI--------------DCLCKMGKVE 487

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++F  +K+K+ + N   YT++I G+C A  +++A  LF  M+ +G  PN +TFNV++
Sbjct: 488 QAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLL 547

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D L K GK+++A SL+D+M +   +P   TY  L++        + A      M S GC
Sbjct: 548 DGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGC 606



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 15/237 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F + ++     P V ++ +++    +       L  F+ +   G+ P++YT+++
Sbjct: 277 DEALELF-FQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTV 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK+G++  G  +L  +L       VV F              N +IDG CK+G +
Sbjct: 336 LIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPF--------------NALIDGYCKRGMM 381

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  +   MK   V PN  TY  +I GFC     + A  L  +M +  + PN+VT+N +
Sbjct: 382 EDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTL 441

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +  LCK   +D A  L  LMI+ G  PD  T+   +D  C  G+V  A ++F S++ 
Sbjct: 442 IHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE 498



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 122/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + + M     SP  V+ +N ++  L K +  D+   L   +   G  PD  T   
Sbjct: 417 DRAMALLNKMYENKLSPNLVT-YNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCA 475

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I+C CKMG+V     V   +       +   +T+LI                     + 
Sbjct: 476 FIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P++IT+N ++DGL K+G V+ A  L   M   + KP V TYT +I      +D++ A 
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRAN 595

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               +M+  G QPNVVT+   +   C+ G++ EA  ++  + + G+  D+F Y+ L++ +
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAY 655

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G+++ A  + + M   GC
Sbjct: 656 GCIGQLDSAFGVLIRMFDTGC 676



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 48/285 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+ +   H          ++ G     K  D  L LFKR+   G FP+  T ++L
Sbjct: 488 QAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHL-LFKRMLFEGCFPNSITFNVL 546

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           ++   K G+V     ++  + +    P V T+T LI+                      C
Sbjct: 547 LDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGC 606

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+ +TY   I   C+QG + +A+E+ +K+K++ +  +   Y  ++  +      + A  
Sbjct: 607 QPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFG 666

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL---------------CKNGKMDEA-----------S 210
           + I M D G +P+  T+++++  L                 N  +D A           +
Sbjct: 667 VLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIIT 726

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            L + M++ G  P+  TY+ L+ G C    ++ A  LF  M+  G
Sbjct: 727 MLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESG 771



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 100/212 (47%), Gaps = 4/212 (1%)

Query: 49  NKHYDTVLSLFKRLN-STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           N H  T L+ FK ++   G    ++++  L+    + G +     V   +++SC +    
Sbjct: 80  NLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEA 139

Query: 108 TFTSLIKVCKPDAIT---YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
            F   +      +++   YN +   L + G +D+   LF  M +  V+PN++++ +++  
Sbjct: 140 RFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNA 199

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            C   +   AK  F  +M  G   +  T+  ++   CK  ++ +A  + ++M Q G   +
Sbjct: 200 HCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRN 259

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +Y  L+ GFC  G+++ A ELF  M+  GC
Sbjct: 260 EVSYTNLIHGFCEVGKIDEALELFFQMKEDGC 291



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 15/225 (6%)

Query: 44  GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN--CFCKMGRVSHGF--------VV 93
           GC+ +    D+   +  R+  TG  P   T+SIL+    F K  +   G         V 
Sbjct: 656 GCIGQ---LDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVD 712

Query: 94  LGRILR-SCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
              I + + F    + F  +++  C P+  TY+ +I GLCK   +  A  LF  MK+  +
Sbjct: 713 NANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGI 772

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+   + S++   C      EA RL   MM+     ++ ++ +++  L + G  ++A  
Sbjct: 773 SPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEE 832

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   ++  G   D   +  LLDG    G V+   +L   ME  GC
Sbjct: 833 IFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGC 877



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
           ++ +  LF+++   G  P++ T+S LI   CK+  +S  F +   +  S  +P      S
Sbjct: 722 FEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNS 781

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
           L+  C              CK G  ++A  L   M + N   ++ +Y  ++ G     + 
Sbjct: 782 LLSSC--------------CKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQ 827

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A+ +F  ++  G   + V + V++D L + G +DE S L D+M + G R  + T+  L
Sbjct: 828 EKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  FD M +     P V ++N ++    K +  D    L + +   GL P+L +++++I
Sbjct: 224 ALRFFDRMEK-KGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI 282

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
           N  C+ GR+     VL  + +  ++ D VT+ +LIK  CK                    
Sbjct: 283 NGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLS 342

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  ITY ++I  +CK G +++A E   +M+ + + PN  TYT+++ GF      NEA R+
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM+D G  P+VVT+N +++  C  GKM +A ++L+ M + G+ PD  +Y+T+L GFC 
Sbjct: 403 LKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCR 462

Query: 238 TGRVNHAKELFVSMESMG 255
           +  V+ A  +   M + G
Sbjct: 463 SYDVDEALRVKRKMVAKG 480



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   MLR H   P V ++  ++  + K  + +       ++   GL P+  T++ 
Sbjct: 327 HQALVMHAEMLR-HGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ F + G ++  + VL  ++ + F+P VVT+ +LI                     K 
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKG 445

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+T++ G C+   VD+A  +  KM  K +KP+ +TY+S+I+GFC      EA 
Sbjct: 446 LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM+  G+ P+  T+  +++  C  G + +A  L + M++ GV PD  TY+ L++G 
Sbjct: 506 DLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGL 565

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L + +
Sbjct: 566 NKQARTREAKRLLLKL 581



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 20  LCIFD------YMLRMHPSPPPVSSFNIMLGCLAKNK-HYDTVLSLFKRLNSTGLFPDLY 72
           LC+ D      ++ + H   P V S+N +L    ++K +     ++FK +  + + P+++
Sbjct: 147 LCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVF 206

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++ILI  FC  G +        R+ +              K C P+ +TYNT+IDG CK
Sbjct: 207 TYNILIRGFCLAGNLDVALRFFDRMEK--------------KGCLPNVVTYNTLIDGYCK 252

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D   EL   M  K ++PN+++Y  VI G C      E   +  EM  +G   + VT
Sbjct: 253 LRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVT 312

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++   CK G   +A  +   M++HG+ P   TY +L+   C  G +N A E    M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR 372

Query: 253 SMG 255
             G
Sbjct: 373 VRG 375



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A    D M R+    P   ++  ++   ++  + +    + K +   G  P + T++ 
Sbjct: 362 NRATEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNA 420

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C  G++     VL  +     TPDVV++++++                     K 
Sbjct: 421 LINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG 480

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD ITY+++I G C+Q    +A +LF +M    + P+  TYT++I  +C   D  +A 
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAI 540

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
           +L  EM+++GV P+VVT++V+++ L K  +  EA  LL  +      P   TY+TL++  
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENC 600

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G +  A ++F SM
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESM 631



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 37/275 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M+    SP  V+   ++ G     K  D + ++ + +   GL PD+ ++S 
Sbjct: 397 NEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI-AVLEDMKEKGLTPDVVSYST 455

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +++ FC+   V     V  +++     PD +T++SLI+  C+                  
Sbjct: 456 VLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG 515

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  TY  +I+  C +G + KA +L  +M +K V P+VVTY+ +I G        EAK
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAK 575

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDE---------------LCKNGKMDEASSLLDLMIQHG 220
           RL +++  +   P+ VT++ +++                 C  G M EA  + + M++  
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKN 635

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +PD   YN ++ G C  G +  A  L+  M   G
Sbjct: 636 HKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSG 670



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 36/246 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ +L    ++   D  L + +++ + G+ PD  T+S LI  FC+  R      +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +LR    PD  T+T+LI                     K   PD +TY+ +I+GL K
Sbjct: 508 FDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTY---------------TSVIRGFCYANDWNEAKRL 177
           Q    +AK L LK+  +   P+ VTY                S+I+GFC      EA ++
Sbjct: 568 QARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M+++  +P+   +NV++   C+ G + +A SL   M++ G      T   L+     
Sbjct: 628 FESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHK 687

Query: 238 TGRVNH 243
            G+VN 
Sbjct: 688 EGKVNE 693



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 2/197 (1%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD MLR+   PP   ++  ++            + L   +   G+ PD+ T+S+L
Sbjct: 503 EACDLFDEMLRV-GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVL 561

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-DAITYNTIIDGLCKQGFV 136
           IN   K  R      +L ++      P  VT+ +LI+ C   +  +  ++I G C +G +
Sbjct: 562 INGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ++F  M +KN KP+   Y  +I G C   D  +A  L+ EM+  G   + VT   +
Sbjct: 622 TEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIAL 681

Query: 197 MDELCKNGKMDEASSLL 213
           +  L K GK++E +S++
Sbjct: 682 VKTLHKEGKVNELNSVI 698



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNE 173
           +C   +  ++ ++    +   +DKA  +    +     P V++Y +V+     +  + + 
Sbjct: 129 LCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ +F EM+   V PNV T+N+++   C  G +D A    D M + G  P+  TYNTL+D
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C   +++   EL  SM   G
Sbjct: 249 GYCKLRKIDDGFELLRSMALKG 270



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 184 QGVQPNVVTFNVIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            G  P V+++N ++D   ++ + +  A ++   M+Q  V P+ FTYN L+ GFCL G ++
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLD 222

Query: 243 HAKELFVSMESMGC 256
            A   F  ME  GC
Sbjct: 223 VALRFFDRMEKKGC 236


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 126/261 (48%), Gaps = 27/261 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL + + M  M   P   +  +++LG L K    +    +  R+   G  PD  T+  
Sbjct: 263 NEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321

Query: 77  LINCFCKMGRVS---------------------HGFVVLGRILRS-CFTPDVVTFTSLIK 114
           L+N  CK+GRV                      HGFV  GR+  +     D+VT   ++ 
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV- 380

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  TYN++I G  K+G V  A E+   M++K  KPNV +YT ++ GFC     +EA
Sbjct: 381 ---PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 437

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM   G++PN V FN ++   CK  ++ EA  +   M + G +PD +T+N+L+ G
Sbjct: 438 YNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 497

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C    + HA  L   M S G
Sbjct: 498 LCEVDEIKHALWLLRDMISEG 518



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 21/264 (7%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G +T    ++A  +   M+  +   P V ++N ++    K       L + + + + G  
Sbjct: 356 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCK 415

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           P++Y+++IL++ FCK+G++   + +L  +      P+ V F  LI               
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K CKPD  T+N++I GLC+   +  A  L   M  + V  N VTY ++I  F  
Sbjct: 476 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 535

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +  EA++L  EM+ QG   + +T+N ++  LC+ G++D+A SL + M++ G+ P + +
Sbjct: 536 RGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSIS 595

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
            N L++G C +G V  A E    M
Sbjct: 596 CNILINGLCRSGMVEEAVEFQKEM 619



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V S+ I++    K    D   +L   +++ GL P+    + LI+ FCK  R
Sbjct: 409 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHR 468

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNT 125
           +     +   + R    PDV TF SLI  +C+ D I                    TYNT
Sbjct: 469 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 528

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+   ++G + +A++L  +M  +    + +TY S+I+G C A + ++A+ LF +M+  G
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+ ++ N++++ LC++G ++EA      M+  G  PD  T+N+L++G C  GR+    
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 246 ELFVSMESMG 255
            +F  +++ G
Sbjct: 649 TMFRKLQAEG 658



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 19/258 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +   M + H   P    +  ++  L+K    +  L L + +   G  PD  T + 
Sbjct: 228 DSALSVLRDMTK-HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 286

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPD 119
           +I   CK  R++    ++ R+L   FTPD +T+  L+                 ++ KP 
Sbjct: 287 VILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPT 346

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           ++ +NT+I G    G +D AK +   M     + P+V TY S+I G+        A  + 
Sbjct: 347 SVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVL 406

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            +M ++G +PNV ++ +++D  CK GK+DEA +LL+ M   G++P+   +N L+  FC  
Sbjct: 407 RDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKE 466

Query: 239 GRVNHAKELFVSMESMGC 256
            R+  A E+F  M   GC
Sbjct: 467 HRIPEAVEIFREMPRKGC 484



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FN ++    K       + +F+ +   G  PD+YT + LI+  C++  + H   +
Sbjct: 451 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 510

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++      + VT+ +LI                          D ITYN++I GLC+
Sbjct: 511 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCR 570

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VDKA+ LF KM    + P+ ++   +I G C +    EA     EM+ +G  P++VT
Sbjct: 571 AGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 630

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           FN +++ LC+ G++++  ++   +   G+ PD  TYNTL+   C  G V  A
Sbjct: 631 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDA 682



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ IF  M R     P V +FN ++  L +       L L + + S G+  +  T++ L
Sbjct: 471 EAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 529

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN F + G +     ++  ++      D +T+ SLIK +C+                   
Sbjct: 530 INAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P +I+ N +I+GLC+ G V++A E   +M  +   P++VT+ S+I G C A    +   
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 649

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +F ++  +G+ P+ VT+N +M  LCK G + +A  LLD  I+ G  P+  T++ LL   
Sbjct: 650 MFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 121/263 (46%), Gaps = 26/263 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +   +   M  ++   P   S+N++L  L     +    ++F  + S  + P L+T  
Sbjct: 156 PGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFG 215

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
           +++   C +  V     VL  + +    P+ V + +LI                      
Sbjct: 216 VVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 275

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PDA T+N +I GLCK   +++A ++  +M  +   P+ +TY  ++ G C     + A
Sbjct: 276 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA 335

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
           K LF  +     +P  V FN ++     +G++D+A ++L D++  +G+ PD  TYN+L+ 
Sbjct: 336 KDLFYRI----PKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 391

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   G V  A E+   M + GC
Sbjct: 392 GYWKKGLVGLALEVLRDMRNKGC 414



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++  L +    D   SLF+++   GL P   + +ILIN  C+ G V         +
Sbjct: 560 TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM 619

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           +    TPD+VTF              N++I+GLC+ G ++    +F K++ + + P+ VT
Sbjct: 620 VLRGSTPDIVTF--------------NSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVT 665

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           Y +++   C      +A  L  E ++ G  PN  T+++++  L     +D  +
Sbjct: 666 YNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDRRT 718



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 13/213 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           + +++G L  N  + T+  L  ++   G+   ++  S+ I+      +   GF   G+  
Sbjct: 108 YQVLIGKLGSNGEFKTIDRLLMQMKDEGI---VFKESLFISIMRDYDKA--GFP--GQTT 160

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R      ++     +  C+P   +YN +++ L        A  +F  M  + + P + T+
Sbjct: 161 R------LMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTF 214

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             V++  C  N+ + A  +  +M   G  PN V +  ++  L K  +++EA  LL+ M  
Sbjct: 215 GVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 274

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            G  PDA T+N ++ G C   R+N A ++   M
Sbjct: 275 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 307



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K GF  +   L L+M++  + +P   +Y  V+      N    A  +F +M+ + + P +
Sbjct: 152 KAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTL 211

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF V+M  LC   ++D A S+L  M +HG  P++  Y TL+       RVN A +L   
Sbjct: 212 FTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 271

Query: 251 MESMGC 256
           M  MGC
Sbjct: 272 MFLMGC 277



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   + +  S P + +FN ++  L +    +  L++F++L + G+ PD  T++ L++  C
Sbjct: 615 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLC 674

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           K G V    ++L   +   F P+  T++ L++   P
Sbjct: 675 KGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVP 710


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 130/295 (44%), Gaps = 72/295 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+++ ++G L      +    LF+ +   G+ P +YT++ILI+ FCK G +      
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +LR   TP+VVT+TSLI                        KP+ +TY  +IDG CK
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCK 570

Query: 133 QGFVDKAKELFLKMK--------------DKN--VKPNVVTYTSVIRGFCYANDWNEAKR 176
            G +DKA +++ +M+              D N    PN++TY +++ G C AN   EA  
Sbjct: 571 AGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHE 630

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL----- 231
           L   M   G +PN + ++ ++D  CK GK++ A  +   M + G  P+ +TY++L     
Sbjct: 631 LLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLF 690

Query: 232 ------------------------------LDGFCLTGRVNHAKELFVSMESMGC 256
                                         +DG C  G+   A  L + ME +GC
Sbjct: 691 KEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGC 745



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 38/271 (14%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD MLR + +P  V+  +++   L   K +D    LF+ +   G  P++ T++ LI+  C
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDAN-KLFEMMLLEGSKPNVVTYTALIDGHC 569

Query: 83  KMGRVSHGFVVLGRIL----------------RSCFTPDVVTFTSLI------------- 113
           K G++     +  R+                   C TP+++T+ +L+             
Sbjct: 570 KAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 114 --------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                     C+P+ I Y+ +IDG CK G ++ A+E+F+KM ++   PN+ TY+S+I   
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                 +   ++  +M++    PNVV +  ++D LCK GK +EA  L+  M + G  P+ 
Sbjct: 690 FKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNV 749

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            TY  ++DGF   G++    EL+  M S GC
Sbjct: 750 ITYTAMIDGFGKIGKIEQCLELYRDMCSKGC 780



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 111/262 (42%), Gaps = 65/262 (24%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     +D    +   + S G  PD  T+S +I   C   +V   F++   + ++   P
Sbjct: 427 CLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVP 486

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
            V T+T LI              D  CK G + +A+  F +M   N  PNVVTYTS+I  
Sbjct: 487 SVYTYTILI--------------DSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHA 532

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD----------------- 207
           +  A    +A +LF  M+ +G +PNVVT+  ++D  CK G++D                 
Sbjct: 533 YLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSD 592

Query: 208 ----------------------------------EASSLLDLMIQHGVRPDAFTYNTLLD 233
                                             EA  LLD M  +G  P+   Y+ L+D
Sbjct: 593 IDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALID 652

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           GFC TG++ +A+E+FV M   G
Sbjct: 653 GFCKTGKLENAQEVFVKMSERG 674



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++  L K    +    L   ++  G  P+   +  LI+ FCK G++ +   V
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++    + P++ T++SLI                       C P+ + Y  +IDGLCK
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  ++A  L LKM++    PNV+TYT++I GF       +   L+ +M  +G  PN +T
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + V+++  C  G +DEA  LLD M Q        +Y  +++GF
Sbjct: 787 YRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF 829



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 20/220 (9%)

Query: 39  FNIMLGCLAKNKHY--DTVLSLFKRLNST----GLFPDLYTHSILINCFCKMGRVSHGFV 92
           +NI +G +  N+      +L L ++  S     G+  +    S    C C  G+    F 
Sbjct: 380 YNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFE 439

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           ++  ++   F PD             D+ TY+ +I  LC    V+KA  LF +MK   + 
Sbjct: 440 IICEMMSKGFVPD-------------DS-TYSKVIGFLCDASKVEKAFLLFEEMKKNGIV 485

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+V TYT +I  FC A    +A+  F EM+     PNVVT+  ++    K  K+ +A+ L
Sbjct: 486 PSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKL 545

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++M+  G +P+  TY  L+DG C  G+++ A +++  M+
Sbjct: 546 FEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQ 585



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 29/250 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIML-GCLAKNK--HYDTVLSLFKRLNSTGLFPDLYT 73
            EA+ I D M R     P V ++ I+L GCL K +      +LS+   + + G +P+   
Sbjct: 289 QEAMDILDRM-RSISCIPNVVTYRILLSGCLGKGQLGRCKRILSM---MMTEGCYPNREM 344

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCK 132
            + L++ +CK    S+ + +               F  +IK  C+P  + YN  I  +C 
Sbjct: 345 FNSLVHAYCKSRDYSYAYKL---------------FKKMIKCGCQPGYLLYNIFIGSICS 389

Query: 133 ------QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
                    ++ A++ + +M D  V  N V  ++  R  C A  +++A  +  EMM +G 
Sbjct: 390 NEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGF 449

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+  T++ ++  LC   K+++A  L + M ++G+ P  +TY  L+D FC  G +  A+ 
Sbjct: 450 VPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARN 509

Query: 247 LFVSMESMGC 256
            F  M    C
Sbjct: 510 WFDEMLRDNC 519



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 18/216 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N ++    +N  ++  L    RL   G      T++ LI  F +  ++   F+V   + 
Sbjct: 173 LNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMS 232

Query: 99  RSCFTPDVVTFTSLI-KVCK-----------------PDAITYNTIIDGLCKQGFVDKAK 140
            S F  D  T       +CK                 PD + YN ++ GLC+     +A 
Sbjct: 233 NSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAM 292

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++  +M+  +  PNVVTY  ++ G          KR+   MM +G  PN   FN ++   
Sbjct: 293 DILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAY 352

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           CK+     A  L   MI+ G +P    YN  +   C
Sbjct: 353 CKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSIC 388



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 15/161 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M + +  P  +SS+  ++     N+ + T + L   L+     P    + I
Sbjct: 801 DEAHRLLDEMKQTY-WPRHISSYRKIIEGF--NREFITSIGLLDELSENESVPVESLYRI 857

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K GR+     +L  I  S   P +      +         Y ++I+ L     V
Sbjct: 858 LIDNFIKAGRLEGALNLLEEISSS---PSLAVANKYL---------YTSLIESLSHASKV 905

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           DKA EL+  M +KNV P + T+  +I+G      W EA +L
Sbjct: 906 DKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQL 946


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 16/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +  LCIFD+M + +   P ++ +N+++   ++  H +  L LF  +   G  PD++T + 
Sbjct: 604 SAGLCIFDFMCK-NAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNT 662

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I C+C   R+     +  ++            TS  +  +P+AIT+  +ID  C++G +
Sbjct: 663 MICCYCNFKRLDDAVQLFAKM------------TS--EQLRPNAITFTILIDAFCREGRM 708

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPNVVTFNV 195
           D A  +F KM ++  +PN+VTY+ +I G+  +    E+  +L+ EM++  + PN+V++++
Sbjct: 709 DDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSI 768

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++D LCK G M EAS      +   + PD   Y  L+ G+C  GR+  A  L+ +M
Sbjct: 769 LIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNM 824



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 123/235 (52%), Gaps = 22/235 (9%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F+ ++R+ P P  V +F+ ++    K  + D    LF  +   G+ PDL  +SILI+   
Sbjct: 295 FNMVVRIGPKPN-VVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTS-------------LIKVCK--------PDAI 121
           K GR+  G  +L   L      DVV F+S             +I++ K        P+ +
Sbjct: 354 KAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVV 413

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           + + +I G C+ G + +A  LF+++     +P+++TY+++I GFC + +  +   L+ +M
Sbjct: 414 SCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDM 473

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           + +  +P+ + ++V+++ LCK G + +A       +  G+ P+ FT NTLLD FC
Sbjct: 474 IKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFC 528



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N +L    + K     + ++  +    +  D  T++ILI    + GRV    ++
Sbjct: 515 PNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALML 574

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++L+  F PDV+T+ +LI  +CK                    PD   YN +I+   +
Sbjct: 575 FFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSR 634

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A  LF+ + ++  KP+V T+ ++I  +C     ++A +LF +M  + ++PN +T
Sbjct: 635 EGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAIT 694

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F +++D  C+ G+MD+A  +   M++ G  P+  TY+ L+ G+
Sbjct: 695 FTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGY 737



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I+  ML    SP  VS  +I++    +N        LF ++   G  P + T+S LI  F
Sbjct: 399 IYKRMLNEGISPNVVSC-SILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGF 457

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDA 120
           CK G +  GF +   +++    PD + ++ LI  +CK                    P+ 
Sbjct: 458 CKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNV 517

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            T NT++D  C+   +  A +++  M   N+K + VTYT +I+G       +EA  LF +
Sbjct: 518 FTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQ 577

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +  +P+V+T+  ++D LCK  K      + D M ++ V PD   YN L++     G 
Sbjct: 578 MLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGH 637

Query: 241 VNHAKELFVSMESMG 255
           +  A  LFV +   G
Sbjct: 638 LEAALGLFVHVVERG 652



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  +L++    P + +++ ++    K+ +      L++ +      PD   +S+L
Sbjct: 430 EACGLFVQILKLG-FEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVL 488

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KV--------C 116
           IN  CK G V        + +    +P+V T  +L+             KV         
Sbjct: 489 INGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNI 548

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D +TY  +I G  + G VD+A  LF +M  K+ KP+V+TY ++I G C     +    
Sbjct: 549 KADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLC 608

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M    V P++  +NV+++   + G ++ A  L   +++ G +PD FT+NT++  +C
Sbjct: 609 IFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYC 668

Query: 237 LTGRVNHAKELFVSMES 253
              R++ A +LF  M S
Sbjct: 669 NFKRLDDAVQLFAKMTS 685



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 14/198 (7%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           F  +   G  P++ T S LI+ +CK G +   FV+   +  +  TPD+            
Sbjct: 295 FNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDL------------ 342

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
             I Y+ +IDGL K G ++  + L L   DK +K +VV ++S +  +    D     +++
Sbjct: 343 --IVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIY 400

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M+++G+ PNVV+ ++++   C+NG++ EA  L   +++ G  P   TY+ L+ GFC +
Sbjct: 401 KRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKS 460

Query: 239 GRVNHAKELFVSMESMGC 256
           G +     L+  M    C
Sbjct: 461 GNLRDGFYLYEDMIKKRC 478



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +++++  L K       L  F +  + GL P+++T + L++ FC++  +     V
Sbjct: 480 PDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKV 539

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
              +       D VT+T LIK                       KPD ITY T+IDGLCK
Sbjct: 540 YYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCK 599

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                    +F  M    V P++  Y  +I           A  LF+ ++++G +P+V T
Sbjct: 600 LKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFT 659

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++   C   ++D+A  L   M    +RP+A T+  L+D FC  GR++ A  +F  M 
Sbjct: 660 FNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKML 719

Query: 253 SMG 255
             G
Sbjct: 720 EEG 722



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++LG L  +   + ++  +  L S         +  ++N F   G V  G      +++ 
Sbjct: 207 LLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQG 266

Query: 101 CFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKA 139
            F  D++T   ++K                       KP+ +T++T+ID  CK+G +DKA
Sbjct: 267 GFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKA 326

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             LF  M    V P+++ Y+ +I G   A    + +RL +  +D+G++ +VV F+  MD 
Sbjct: 327 FVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDA 386

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             K G +     +   M+  G+ P+  + + L+ GFC  GR+  A  LFV +  +G
Sbjct: 387 YVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLG 442



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 35/171 (20%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLK--MKDKNVKPNVV--------------------- 156
           ++ Y  +I+  C++G  DK+ ++F+   +K   V PNVV                     
Sbjct: 167 SVVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYG 226

Query: 157 ------------TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
                        Y  V+  F    +     R    ++  G   +++T N I+  +    
Sbjct: 227 ELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQN 286

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  A    +++++ G +P+  T++TL+D +C  G ++ A  LF  M   G
Sbjct: 287 DIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNG 337



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  ML   P P  V+   ++ G        ++ L L+  +    + P++ ++SI
Sbjct: 709 DDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSI 768

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK G +          L     PDV+ +T LI+              G CK G +
Sbjct: 769 LIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIR--------------GYCKVGRL 814

Query: 137 DKAKELFLKMKDKNVKPN 154
            +A  L+  M    + P+
Sbjct: 815 TEAMMLYDNMLLNRLTPD 832


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            +S+N+++    K+   +  L +   L+ T + P+  T+  ++   C  G++     VL 
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
           R L+S   PDVVT T LI                     K CKPD +TYN +I G CK+G
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A     K+     + +V+++  ++R  C    W +A +L   M+ +G  P+VVTFN
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFN 315

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++++ LC+ G + +A ++L++M +HG  P++ ++N L+ GFC    ++ A E    M S 
Sbjct: 316 ILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSR 375

Query: 255 GC 256
           GC
Sbjct: 376 GC 377



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D  L+     P V +  +++    K       + LF  +   G  PD+ T+++L
Sbjct: 189 QAMQVLDRQLQ-SKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVL 247

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTF---------------------TSLIKVC 116
           I  FCK GR+    + L ++       DV++                      T L K C
Sbjct: 248 IKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  +T+N +I+ LC++G + KA  +   M      PN  ++  +I+GFC     + A  
Sbjct: 308 FPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIE 367

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               M+ +G  P++VT+N+++  LCK+GK+D+A  +L  +   G  P   +YNT++DG  
Sbjct: 368 HLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 427

Query: 237 LTGRVNHAKELFVSM 251
             G+   A EL   M
Sbjct: 428 KVGKAELAVELLEEM 442



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+  H   P   SFN ++      K  D  +   + + S G +PD+ T++IL+   CK G
Sbjct: 336 MMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDG 395

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           +V    V+L ++                K C P  I+YNT+IDGL K G  + A EL  +
Sbjct: 396 KVDDAVVILSQLSS--------------KGCSPSLISYNTVIDGLLKVGKAELAVELLEE 441

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K +KP+++T TSV+ G       +EA + F  +   G++PN   +N IM  LCK  +
Sbjct: 442 MCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQ 501

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              A   L  M+ +G +P   +Y TL+ G    G    A +L   + S G
Sbjct: 502 TSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ IF   L  +     V S N++L  L     +   + L   +   G FP + T +I
Sbjct: 258 DEAI-IFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNI 316

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C+ G +     VL  + +   TP+  +F  LI                     + 
Sbjct: 317 LINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRG 376

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TYN ++  LCK G VD A  +  ++  K   P++++Y +VI G         A 
Sbjct: 377 CYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAV 436

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM  +G++P+++T   ++  L + GK+ EA      +   G++P+AF YN+++ G 
Sbjct: 437 ELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGL 496

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   + + A +  V M + GC
Sbjct: 497 CKAQQTSLAIDFLVDMVANGC 517



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 18/229 (7%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L +N   +      + + + G  PD+   + LI  FCK+GR  +   ++G +  S    D
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 106 VVTFTSLIKV-CK-----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
             ++  LI   CK                 P+A TY+ ++  LC +G + +A ++  +  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQL 198

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
                P+VVT T +I   C  +   +A +LF EM  +G +P+VVT+NV++   CK G++D
Sbjct: 199 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLD 258

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           EA   L  +  +G + D  ++N +L   C  GR   A +L  +M   GC
Sbjct: 259 EAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI+L  L K+   D  + +  +L+S G  P L +++ +I+   K+G+      +
Sbjct: 379 PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVEL 438

Query: 94  LGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNTIIDGLCK 132
           L  +      PD++T TS++       KV               KP+A  YN+I+ GLCK
Sbjct: 439 LEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCK 498

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                 A +  + M     KP   +YT++I+G  Y     EA +L  E+  +G+    + 
Sbjct: 499 AQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSLI 558

Query: 193 FNVIMD 198
             V  D
Sbjct: 559 VKVSQD 564


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A     +MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ FCK G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  TY+
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++ +  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E    M  +N++ + V YT++I G C      +A+++  EM+  G++  + T
Sbjct: 324 EGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S L+  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 16/219 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSIL 77
           A+  + YM  M      V S N+++  L KN    D    +F+ +   G  PD YT+  L
Sbjct: 139 AMSFYKYMREMGVRQS-VVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTL 197

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN  CK+G+               F    +      K C P  +TY+ ++ GLC+ G VD
Sbjct: 198 INGLCKLGKT--------------FEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVD 243

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  LF KMK K ++PNV TY+S++ G C      EA  L   M+ +  +PN+VT++ ++
Sbjct: 244 EAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLI 303

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           + LCK GK+ EA   LD M   G++PDA  Y  +++GFC
Sbjct: 304 NGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 16/241 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ +F  M      P   S  ++    L +       +S +K +   G+   + + +
Sbjct: 101 PLDAIRVFHKMNDFGCKPTDKSYISV-FAILVEENQLKVAMSFYKYMREMGVRQSVVSLN 159

Query: 76  ILINCFCK-MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +LI   CK  G +   F +   + +              + C PD+ TY T+I+GLCK G
Sbjct: 160 VLIKALCKNSGTIDAAFEIFREMPK--------------RGCDPDSYTYGTLINGLCKLG 205

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
              +AKELF +M  K   P+VVTY+ ++ G C A + +EA  LF +M  + ++PNV T++
Sbjct: 206 KTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYS 265

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            +MD LCKNG   EA  LL++M++   +P+  TY+TL++G C  G++  A E    M+  
Sbjct: 266 SLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQ 325

Query: 255 G 255
           G
Sbjct: 326 G 326



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 29/270 (10%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           T + A  IF  M +    P   +   ++ G     K ++    LFK +++ G  P + T+
Sbjct: 171 TIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAK-ELFKEMDTKGCSPSVVTY 229

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------- 113
           S L++  C+ G V     +  ++ +    P+V T++SL+                     
Sbjct: 230 SCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVR 289

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K  KP+ +TY+T+I+GLCK+G + +A E   +MK + +KP+   Y  +I GFC    + E
Sbjct: 290 KRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQE 349

Query: 174 AKRLFIEMMDQGVQPNVVTF-------NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           A     EM+   + PN VT+       N+++  LC NG ++ +  L   M   G+  DA 
Sbjct: 350 AATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAG 409

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           T+++L+  FC  G ++ A  +F  M   GC
Sbjct: 410 TFDSLVKCFCKKGDLHKAARIFDEMVLDGC 439



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F KM D   KP   +Y SV       N    A   +  M + GV+ +VV+ NV++ 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 199 ELCKN-GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCKN G +D A  +   M + G  PD++TY TL++G C  G+   AKELF  M++ GC
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGC 222



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 102/201 (50%), Gaps = 10/201 (4%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ + + M+R    P  V+   ++ G   + K  + V +L  R+   GL PD   +  +
Sbjct: 279 EAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETL-DRMKLQGLKPDAGLYGKI 337

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN FC + +       L  ++    +P+ VT++  +K+        N ++ GLC  G ++
Sbjct: 338 INGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKL-------NNMVVQGLCTNGNLN 390

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           ++ +L++ M+ + +  +  T+ S+++ FC   D ++A R+F EM+  G  P+   ++ ++
Sbjct: 391 RSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVV 450

Query: 198 DELCKNGKMDEA--SSLLDLM 216
                  K+ EA  S +++LM
Sbjct: 451 GGFWDRRKVREAFESIVVELM 471


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F +++    KN +    + +F+ +   G+   + T++ LI+  C  G+V  G  +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +     +P+ +TF  ++K  CK                    PD + YN +ID   +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  +   M  K + PNV TY  +I GF  + DW  A  L  EM ++G++ +VVT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++  LC  G++ +A  LLD M + G+ P+  TYNT++ GFC  G +  A E+   ME
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME 501



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 30  HPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           HP   P  SS N +L  L   K  D     F+      + PD+YT + +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------------PDAITYN 124
               V   I      P V T+ SLI   CK                       P A+T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+G CK      A  +F +MK + +  +VVTY S+I G C      E  +L  EM D 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PN +TF  ++   CK G M +A+  +D M +  V PD   YN L+D +   G++  A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 245 KELFVSMESMG 255
             +  +M   G
Sbjct: 389 MAVKEAMAKKG 399



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 37/263 (14%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   LR   SP  + +FN ++  L +         + K + + GL P + T++ LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 83  K---MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------P 118
           K    G + H  ++L  ++ +  +P  VTF  LI   CK                     
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY------ANDWN 172
             +TYN++I GLC +G V++  +L  +M+D  + PN +T+  V++GFC       ANDW 
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWI 357

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +       M ++ V+P+VV +N+++D   + GKM++A ++ + M + G+ P+  TYN L+
Sbjct: 358 DG------MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF  +G    A  L   M+  G
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKG 434



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 21/192 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD+  ++ILI+ + ++G++     V   + +   +P+V T+  LI               
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K  + D +TYN +I  LC +G V KA +L  +M +  ++PN +TY ++I+GFC 
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +   A  +   M     + NVVT+NV +   C+ GKMDEA+ LL+ M+   + P+  T
Sbjct: 487 KGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546

Query: 228 YNTLLDGFCLTG 239
           Y T+ +G    G
Sbjct: 547 YETIKEGMMEKG 558



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F+ M +       V ++N ++  L      +  + L + +   GL P+  T   ++
Sbjct: 283 AVRVFEEM-KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVL 341

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK--------------------- 117
             FCK G ++     +  +      PDVV +  LI V +                     
Sbjct: 342 KGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGIS 401

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+  TYN +I G  + G    A  L  +MK+K ++ +VVTY  +I   C   +  +A +L
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM + G++PN +T+N I+   C  G +  A  +   M +   R +  TYN  +  FC 
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 238 TGRVNHAKELFVSM 251
            G+++ A +L   M
Sbjct: 522 IGKMDEANDLLNEM 535


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 21/249 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R H    P+     +L  + K     TV   +  +   G   ++Y  +IL+N FCK G +
Sbjct: 197 RKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNI 256

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTI 126
                V   I +    P VV+F +LI   CK                    PD  TY+ +
Sbjct: 257 CDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSAL 316

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+ LCK+  +D A  LF +M ++ + PN V +T++I G       +  K  + +M+ +G+
Sbjct: 317 INALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGL 376

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           QP++V +N +++  CKNG +  A +++D MI+ G+RPD  TY TL+DGFC  G V+ A E
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALE 436

Query: 247 LFVSMESMG 255
           +   M+  G
Sbjct: 437 IRKEMDQNG 445



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 21/217 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F  ++   ++N   D +   ++++ S GL PD+  ++ L+N FCK G +     ++  ++
Sbjct: 348 FTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407

Query: 99  RSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQGFVD 137
           R    PD VT+T+LI   C+                     D + ++ +I G+CK+G V 
Sbjct: 408 RRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVI 467

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+    +M    +KP+ VTYT ++  FC   D     +L  EM   G  PNVVT+NV++
Sbjct: 468 DAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLL 527

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + LCK G+M  A  LLD M+  GV PD  TYNTLL+G
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG 564



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K  + D    L   +  +   PD++T+S LIN  CK  ++     +
Sbjct: 273 PTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRL 332

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +      P+ V FT+LI                     K  +PD + YNT+++G CK
Sbjct: 333 FYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A+ +   M  + ++P+ VTYT++I GFC   D + A  +  EM   G++ + V 
Sbjct: 393 NGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVG 452

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+ ++  +CK G++ +A   L  M++ G++PD  TY  ++D FC  G      +L   M+
Sbjct: 453 FSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512

Query: 253 SMG 255
           S G
Sbjct: 513 SDG 515



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           MLR    P  V+ + +M+    K     T   L K + S G  P++ T+++L+N  CK+G
Sbjct: 476 MLRAGMKPDDVT-YTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLG 534

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
           ++ +  ++L  +L     PD +T+ +L++
Sbjct: 535 QMKNADMLLDAMLNVGVVPDDITYNTLLE 563


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 195 LKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHC 254

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 255 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKF 314

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 315 TYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 374

Query: 252 ESMG 255
            S+G
Sbjct: 375 LSVG 378



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 21/236 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G +  
Sbjct: 97  HKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRV 156

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              V   I +    P VV++ +L+                         PD  TY+ +I+
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLIN 216

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q + P
Sbjct: 217 GLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 276

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 277 DLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTA 332



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 27/265 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G 
Sbjct: 151 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGX 204

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 205 XPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 264

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 265 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCC 324

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G+ PDA 
Sbjct: 325 KEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAG 384

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
           TY  +++ FC  G V    +L   M
Sbjct: 385 TYTMIINEFCKKGDVWKGSKLLKEM 409



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +    +  +     T   V+        +     
Sbjct: 65  RSDIYVFSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWG 124

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 125 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 184

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 185 RLGDLDEGFRLKSAMLASG 203


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 299

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 300 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 359

Query: 252 ESMG 255
            S+G
Sbjct: 360 LSVG 363



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 191 PDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 250

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 251 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 310

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 311 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 370

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 371 YTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 78  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 197

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A  LF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 198 VLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 258 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 317

Query: 245 KE 246
            E
Sbjct: 318 FE 319



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 136 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 189

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 250 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 309

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 310 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 369

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 370 TYTMIVNEFCKKGDVWKGSKLLKEMQRDG 398



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 50  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 170 RLGDLDEGFRLKSAMLASG 188


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D+A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A +L++ M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD  +R     P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  
Sbjct: 158 VFD-AIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGL 216

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK  ++     +   +L     P+ VTFT+LI                     +   PD 
Sbjct: 217 CKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDL 276

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ITYNT+I GLCK+G + +A+ L  +M  K +KP+ +TYT++I G C   D   A      
Sbjct: 277 ITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKR 336

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+++ ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD+ TY  +++ FC  G 
Sbjct: 337 MIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGD 396

Query: 241 VNHAKELFVSMESMG 255
           V    +L   M+  G
Sbjct: 397 VWTGSKLLKEMQRDG 411



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L    +PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK G ++ A E   +M ++N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +I++E CK G +   S LL  M + G  P   T
Sbjct: 377 LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 126/265 (47%), Gaps = 56/265 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLN--------STGLFPDLYTHSILINCFCKMG 85
           P V +F I++  + K +  D  L + ++++        S  + PD+  ++ LI+  CK+G
Sbjct: 338 PNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVG 397

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           R   G  ++ R +RS             K C PD ITYN +IDG CK G ++K KELF +
Sbjct: 398 RQQEGLGLMER-MRSQ------------KGCAPDTITYNCLIDGFCKAGEIEKGKELFDE 444

Query: 146 MKDKNVKPNV-----------------------------------VTYTSVIRGFCYAND 170
           M  + V PNV                                   VTYT++I  FC  N+
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNN 504

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           + +A  LF EM+  G  P+ + +  ++    + G+M +AS +L  + + G+RPD   YNT
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNT 564

Query: 231 LLDGFCLTGRVNHAKELFVSMESMG 255
           L+ GFC T + +   E+   ME  G
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAG 589



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 21/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E L + + M       P   ++N ++    K    +    LF  +N  G+ P++ T + L
Sbjct: 401 EGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTL 460

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +   C+ GRVS          R     D VT+T+LI                       C
Sbjct: 461 VGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGC 520

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PDAI Y T+I G  + G +  A  +  ++K   ++P+ V Y ++I GFC  N ++    
Sbjct: 521 SPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFE 580

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM + G++P+ +T+N ++    KNG +  A  ++  MI+ GV P   TY  +++ +C
Sbjct: 581 MLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYC 640

Query: 237 LTGRVNHAKELFVSMES 253
           L G  N A E+F  M++
Sbjct: 641 LNGNGNEAMEIFKDMKA 657



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N +L  LA+  +++ +  L +++    + P++ T  ILIN  CK  RV     VL ++  
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK-DKNVKPNVVTY 158
              +  +          +PD + YNT+IDGLCK G   +   L  +M+  K   P+ +TY
Sbjct: 369 GKESGGISV------SVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITY 422

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             +I GFC A +  + K LF EM  +GV PNVVT N ++  +C+ G++  A +      +
Sbjct: 423 NCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR 482

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            G++ DA TY  L++ FC       A ELF  M   GC
Sbjct: 483 RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGC 520



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V  +N ++  L K       L L +R+ S  G  PD  T++ LI+ FCK G +  G  
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +   + +    P+VVT  +L+                     +  K DA+TY  +I+  C
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
                +KA ELF +M      P+ + Y ++I GF  A    +A  +  E+   G++P+ V
Sbjct: 501 NVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTV 560

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N ++   C+  K      +L  M + G++PD  TYNTL+      G +  A+++   M
Sbjct: 561 CYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKM 620

Query: 252 ESMG 255
              G
Sbjct: 621 IKAG 624



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 110/259 (42%), Gaps = 27/259 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHS 75
           +A+ +F+ ML+   SP  +  + ++ G     +  D   VL+  K+L   G+ PD   ++
Sbjct: 507 KAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKL---GIRPDTVCYN 563

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK----- 117
            LI  FC+  +    F +L  +  +   PD +T+ +LI             KV +     
Sbjct: 564 TLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA 623

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNE 173
              P   TY  +I+  C  G  ++A E+F  MK  + V PN V Y  +I   C  N    
Sbjct: 624 GVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKS 683

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  L  +M   GV PN  T+N I   L     +++    +D MI+H   PD  T   L +
Sbjct: 684 AVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE 743

Query: 234 GFCLTGRVNHAKELFVSME 252
                G +   K+     E
Sbjct: 744 WLSAVGEIERLKKFVAGCE 762



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ IF  M      PP    +NI++  L KN    + +SL + +   G+ P+  T++ 
Sbjct: 646 NEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNA 705

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +         +   F  + R++                 C PD IT   + + L   G +
Sbjct: 706 IFKGLRDEKDLEKVFEFMDRMIE--------------HACNPDYITMEILTEWLSAVGEI 751

Query: 137 DKAKEL 142
           ++ K+ 
Sbjct: 752 ERLKKF 757



 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 24/252 (9%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSL-FKRLNSTGLFPDLYT 73
           + ++AL   +Y+    PS P   S          +  +  +  L F   +S      LY 
Sbjct: 95  SSSQALKFLNYLQNNSPSSPDTQSL--------LSYTFQAIFELAFCEPDSNANLSRLYK 146

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
            S  +N    +   S      GR         ++ F  L    K +    N  +  L + 
Sbjct: 147 TSKELNIPLTVNAASFLLRASGR--SELVEESLILFNDLDPSVK-NTYLRNVWLSILLRS 203

Query: 134 GFVDKA----KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA-------KRLFIEMM 182
           G V  A     E+F    D N +PN  T   ++  F    + NE          L ++  
Sbjct: 204 GRVKDALKVIDEMFESNDDSNCRPNDAT-GDILFSFLLKRERNEELLSEDEIVNLVLKFG 262

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           + GV  +      ++  LC+N K +    L   MI+ G   ++   N+LL G    G  N
Sbjct: 263 EHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFN 322

Query: 243 HAKELFVSMESM 254
              EL   M  M
Sbjct: 323 RMNELMEKMVEM 334


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A  LF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIVNEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F   LR     P V ++N ++    +  + D    +   +   GL PD+ T +IL
Sbjct: 365 EALLLFSE-LRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTIL 423

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           +  FC+MG +     +   +L     PD + +T+ I                     +  
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGF 483

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITYN +I+GLCK G  D A EL  KM+ + + P+ VTYTS+I     +    +A+ 
Sbjct: 484 PPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEE 543

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M+ +G+ P+VVT+ V++      G++D A    D M   GV P+  TYN L+ G C
Sbjct: 544 VFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLC 603

Query: 237 LTGRVNHAKELFVSMESMGC 256
               ++ A  LF  MES G 
Sbjct: 604 KENMMDVAYNLFAEMESKGV 623



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M RM    P   S+N+++  L+    +D    L ++++  GL    +T++ LI
Sbjct: 226 AVEVLDVM-RMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLI 284

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             FCK         +   +L     P VVT              YNTI+  LC+ G V  
Sbjct: 285 RGFCKKEMFEEANDLRREMLGRGALPTVVT--------------YNTIMYSLCRLGRVSD 330

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+     M ++++ P++V+Y ++I G+    ++ EA  LF E+  + + P+VVT+N ++D
Sbjct: 331 ARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLID 390

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C+ G +D A  + D MI+HG+ PD  T+  L+ GFC  G +  AKELF  M S G
Sbjct: 391 GGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 21/221 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F I++    +  +      LF  + S GL PD   ++  I    K+G  S  F +
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +    F PD++T+  LI  +CK                    PD +TY +II     
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLI 534

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA+E+F  M  K + P+VVTYT +I  +      + AK+ F EM D+GV PNV+T
Sbjct: 535 SGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT 594

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +N ++  LCK   MD A +L   M   GV P+ +TY  L++
Sbjct: 595 YNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 22/232 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD ML     P  ++    ++G L K  +      + + + + G  PDL T+++LIN  
Sbjct: 439 LFDEMLSRGLKPDCIAYTTRIVGEL-KLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGL 497

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK+G       ++ ++      PD VT+TS+I                     K   P  
Sbjct: 498 CKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSV 557

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TY  +I     +G +D AK+ F +M+DK V PNV+TY ++I G C  N  + A  LF E
Sbjct: 558 VTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAE 617

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           M  +GV PN  T+ ++++E        +A  L   M+   ++PD+ T++ L+
Sbjct: 618 MESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALM 669



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 22/219 (10%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G++    P++A  + + M +    PP + ++N+++  L K  ++D    L +++   G+ 
Sbjct: 461 GELKLGNPSKAFGMKEEM-KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIV 519

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD  T++ +I+     G +     V   +L+    P VVT+T LI               
Sbjct: 520 PDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKY 579

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K   P+ ITYN +I GLCK+  +D A  LF +M+ K V PN  TYT +I     
Sbjct: 580 FDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSN 639

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
              W +A +L+ +M+D+ ++P+  T + +M  L K+ K+
Sbjct: 640 LQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 53/259 (20%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S   V   ++++   AK    +  L +F ++ + GL PD+       NC     RV    
Sbjct: 133 SEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVR------NC----NRV---- 178

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVC--KPDAITYNTIIDGLCKQGFV------------- 136
             L  +       +V    S++  C  +P  +T+NT++D  CK+G V             
Sbjct: 179 --LKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMF 236

Query: 137 ----------------------DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                                 D+AKEL  +M    +K +  TY  +IRGFC    + EA
Sbjct: 237 GCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEA 296

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L  EM+ +G  P VVT+N IM  LC+ G++ +A   LD+M+   + PD  +YNTL+ G
Sbjct: 297 NDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYG 356

Query: 235 FCLTGRVNHAKELFVSMES 253
           +   G    A  LF  + S
Sbjct: 357 YSRLGNFAEALLLFSELRS 375



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 11/248 (4%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F ++ +        ++F  +L  LAKN        + ++     +  D     
Sbjct: 65  PLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKV--DGGVLD 122

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK-------PDAITYNTIID 128
           +L+   C  GR S   V L  +L   F   ++    L+   K       PD    N ++ 
Sbjct: 123 VLVGIGC--GRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLK 180

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            L  +  V++ +E++  M    ++P +VT+ +++   C   +   A  +   M   G  P
Sbjct: 181 LLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDP 240

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N V++NV+++ L   G+ D A  L++ M   G++  A TYN L+ GFC       A +L 
Sbjct: 241 NDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLR 300

Query: 249 VSMESMGC 256
             M   G 
Sbjct: 301 REMLGRGA 308


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +AK+L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V+
Sbjct: 289 KGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVS 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LCK G+  +A  +L  M+  G++PD  TY  ++  FC  G V    +L   M+
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 14/221 (6%)

Query: 35  PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           P  +   +L  L K K++  V S +K +        LY  +IL++ FCK G +       
Sbjct: 100 PFDTCRKVLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEI------- 152

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
            R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   M    V+P+
Sbjct: 153 -RLAQSVF--DGITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPD 205

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           V TY+ +I G C  +  +EA +LF EM+D+G+ PN VTF  ++D  CKNGK+D A  +  
Sbjct: 206 VYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYK 265

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M+  G  PD  TYNTL+ G C  G +  AK+L   M   G
Sbjct: 266 QMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKG 306



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +     +  ++L   F+PD +T+ +LI                     K  KPD ITY T
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V+YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ ++M E CKNG +   S LL  M + G  P
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M   G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMHRDG 417



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F +++    KN +    + +F+ +   G+   + T++ LI+  C  G+V  G  +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +     +P+ +TF  ++K  CK                    PD + YN +ID   +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A  +   M  K + PNV TY  +I GF  + DW  A  L  EM ++G++ +VVT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +NV++  LC  G++ +A  LLD M + G+ P+  TYNT++ GFC  G +  A E+   ME
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME 501



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 30  HPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           HP   P  SS N +L  L   K  D     F+      + PD+YT + +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIK-VCK-----------------------PDAITYN 124
               V   I      P V T+ SLI   CK                       P A+T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+G CK      A  +F +MK + +  +VVTY S+I G C      E  +L  EM D 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL 328

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+ PN +TF  ++   CK G M +A+  +D M +  V PD   YN L+D +   G++  A
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 245 KELFVSMESMG 255
             +  +M   G
Sbjct: 389 MAVKEAMAKKG 399



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 37/263 (14%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   LR   SP  + +FN ++  L +         + K + + GL P + T++ LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 83  K---MGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------P 118
           K    G + H  ++L  ++ +  +P  VTF  LI   CK                     
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY------ANDWN 172
             +TYN++I GLC +G V++  +L  +M+D  + PN +T+  V++GFC       ANDW 
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWI 357

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +       M ++ V+P+VV +N+++D   + GKM++A ++ + M + G+ P+  TYN L+
Sbjct: 358 DG------MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            GF  +G    A  L   M+  G
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKG 434



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 21/206 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           PD+  ++ILI+ + ++G++     V   + +   +P+V T+  LI               
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K  + D +TYN +I  LC +G V KA +L  +M +  ++PN +TY ++I+GFC 
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCD 486

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +   A  +   M     + NVVT+NV +   C+ GKMDEA+ LL+ M+   + P+  T
Sbjct: 487 KGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMES 253
           Y T+ +G    G     +   VS  S
Sbjct: 547 YETIKEGMMEKGYTPDIRGCTVSQAS 572



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 30/155 (19%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N+++G L         + L   ++  GL P+  T++ +I  FC  G +   + +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R +  C               + + +TYN  I   C+ G +D+A +L  +M DK + PN 
Sbjct: 499 R-MEKCRK-------------RANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           +TY ++  G                MM++G  P++
Sbjct: 545 ITYETIKEG----------------MMEKGYTPDI 563


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K +      S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 241 KNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 300

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 301 TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 360

Query: 252 ESMG 255
            S+G
Sbjct: 361 LSVG 364



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 157 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 216

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCK 276

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A +L  +M  K +KP+ +TYT++I G C   D + A      M+ + ++ + V 
Sbjct: 277 KGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 336

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  ++  LC+ G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L 
Sbjct: 337 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +  +G    LY  +IL++ FCK  
Sbjct: 79  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKER 138

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 139 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 198

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQ 258

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY  L+DG C  G ++ A
Sbjct: 259 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTA 318

Query: 245 KE 246
            E
Sbjct: 319 FE 320



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 23/208 (11%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 185 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 244

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L     PD++T+ +LI                     K  KPD ITY  
Sbjct: 245 VDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTA 304

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 305 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 364

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++P+  T+ +I++E CK G + + S LL
Sbjct: 365 LKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 23/183 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD ML     P  V+ F  ++    KN   D  L ++K++ S  L PDL T++ 
Sbjct: 211 DDANELFDEMLVKGLVPNGVT-FTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNT 269

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LI   CK G +     ++  +      PD +T+T+LI  C                    
Sbjct: 270 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQEN 329

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEA 174
            + D + Y  +I GLC++G    A+++  +M    +KP+  TYT +I  FC   D W  +
Sbjct: 330 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGS 389

Query: 175 KRL 177
           K L
Sbjct: 390 KLL 392



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 62/139 (44%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 110

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK   +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 111 FYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 170

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 171 RLGDLDEGFRLKSAMHASG 189


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   ++++G  PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I G CK
Sbjct: 229 FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + + ++L  +M  K +KP+ +TYT++I G C   D   A     +M+++ ++ + V 
Sbjct: 289 KGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVV 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LCK G+  +A  +L  M+  G++PD+ TY  +++ FC  G VN   +L   M+
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 21/240 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G +
Sbjct: 93  REHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEI 152

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYNTI 126
               +V   I +    P VV+F +L    IK+                  +PD  TY+ +
Sbjct: 153 RLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVL 212

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I+GLCK+  +D+A ELF +M +K + PN VT+T++I G C     + A  ++ +++ QG+
Sbjct: 213 INGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGL 272

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            P+++T+N ++   CK G + +   L+D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 273 SPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK G+
Sbjct: 197 MHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +     +  +IL    +PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 LDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   KM ++N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ ++M+E CKNG ++  S LL  M + G  P   T
Sbjct: 377 LKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 23/262 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F   L  H SPP   +FNI++  L +    +    LF  + S G  PD+ T++ 
Sbjct: 180 HEAIFLFKENLAFH-SPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNT 238

Query: 77  LINCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLI----KVCK-------------- 117
           LI+  CK   +     +L  +  R+  +PDV+T+TS+I    K+ K              
Sbjct: 239 LISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRS 298

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P  +T+N +IDG  K G +  A+ +  KM   +  P+VVT+TS+I G+C   D    
Sbjct: 299 GIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLG 358

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +++  M  + V PN+ T++VI++ LCK+ ++ EA  LL  +    V P  F YN ++DG
Sbjct: 359 LKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDG 418

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC  G V+ A  +   ME   C
Sbjct: 419 FCKAGNVDEANVIVTEMEEKRC 440



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 22/245 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFV 92
           P V ++N ++  L K    D    L K + S     PD+ T++ +I+ F K+G++    V
Sbjct: 231 PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASV 290

Query: 93  VLGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLC 131
           +   ++RS   P VVTF  LI                       C PD +T+ ++IDG C
Sbjct: 291 LFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYC 350

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +    +++  MK +NV PN+ TY+ +I   C  N  +EA+ L  ++    V P   
Sbjct: 351 RTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPF 410

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N ++D  CK G +DEA+ ++  M +   RPD  T+  L+ G C+ GR+  A ++F  M
Sbjct: 411 IYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKM 470

Query: 252 ESMGC 256
            ++GC
Sbjct: 471 LAIGC 475



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 17/231 (7%)

Query: 26  MLRMHPSPPPVSSF--NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           ++ +      +SSF  N +L  L K       + LFK   +    P+ +T +ILI   C+
Sbjct: 151 IIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCR 210

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +G V  GF +   +          +F      C PD +TYNT+I GLCK   +D+A +L 
Sbjct: 211 VGEVEKGFELFNAMQ---------SFG-----CLPDVVTYNTLISGLCKANELDRACDLL 256

Query: 144 LKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
            +++ +N   P+V+TYTS+I GF        A  LF EM+  G++P VVTFNV++D   K
Sbjct: 257 KEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGK 316

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            G M  A ++ + M  +   PD  T+ +L+DG+C TG +    +++  M++
Sbjct: 317 IGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKA 367



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K    +    LF+ +  +G+ P + T ++LI+ F K+G +     +
Sbjct: 267 PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAM 326

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++      PDVVTFTSLI                     +   P+  TY+ II+ LCK
Sbjct: 327 HEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A++L  ++K  +V P    Y  VI GFC A + +EA  +  EM ++  +P+ VT
Sbjct: 387 DNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           F +++   C  G+M EA  +   M+  G  PD  T ++L+      G+ + A
Sbjct: 447 FTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEA 498



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY  +I  LC+ G  D  + +   M+      +      ++  F  A  ++ AK+L IE+
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEV 154

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +  + +   +N +++EL K GK+ EA  L    +     P+ +T+N L+ G C  G V
Sbjct: 155 QGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEV 214

Query: 242 NHAKELFVSMESMGC 256
               ELF +M+S GC
Sbjct: 215 EKGFELFNAMQSFGC 229



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 15/195 (7%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
           F RLN + L     T+ +LI   C+MG      +V+G +              LI     
Sbjct: 82  FCRLNFS-LIHCFSTYELLIRSLCQMGLHDLVEMVIGYMRSD---------GHLI----- 126

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D+     ++    + G  D AK+L ++++ +  + +   Y  ++         +EA  LF
Sbjct: 127 DSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLF 186

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            E +     PN  TFN+++  LC+ G++++   L + M   G  PD  TYNTL+ G C  
Sbjct: 187 KENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKA 246

Query: 239 GRVNHAKELFVSMES 253
             ++ A +L   ++S
Sbjct: 247 NELDRACDLLKEVQS 261


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI   CK                    P+ + + T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ   R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++    K    D    LF  +   GL P+    + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N + + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 330 EGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  +      +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 234

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ V FT+LI                     +   PD ITYNT+I GLCK
Sbjct: 235 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ +  + + V 
Sbjct: 295 KGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVX 354

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC  G+  +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 355 YTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 253 SMG 255
             G
Sbjct: 415 RDG 417



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 21/238 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G +  
Sbjct: 101 HKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJ 160

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              V   I +    P VV++ +L+                        +PD  TY+ +I+
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK+   D A ELF +M  K + PN V +T++I G C     + A  ++ +M+ Q + P
Sbjct: 221 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A E
Sbjct: 281 DLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFE 338



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +    +        T   V+        +     
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K  +    L +F+ ++  G+   + T++ LI    K G+V     +
Sbjct: 654 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 713

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
               +R    PD+V + +LI                     K   PD +TYNT++ GLC 
Sbjct: 714 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 773

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A++L  +M ++ ++P++VTY ++I G+    D  +A R+  EMM++G  P ++T
Sbjct: 774 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 833

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCKNG+ D+A +++  M+++G+ PD  TY +L++G 
Sbjct: 834 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +        L + +   GL PD++T++ILIN  CK G V     +  
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 680

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R      VVT+T+LI                     +  +PD + YN +I+     G
Sbjct: 681 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 740

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E+  +M+ K + P+ VTY +++RG C     +EA++L  EM ++G+QP++VT+N
Sbjct: 741 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 800

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + + M+  G  P   TYN L+ G C  G+ + A+ +   M   
Sbjct: 801 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 860

Query: 255 G 255
           G
Sbjct: 861 G 861



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD ML      P    +N ++G        DT L    R+   G+   + T+++
Sbjct: 567 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 626

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR +  + ++  +      PDV               TYN +I+G CK+G V
Sbjct: 627 LVHALFMDGRGTEAYELVEEMGGKGLAPDV--------------FTYNILINGHCKEGNV 672

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F  M  + V+  VVTYT++I          E  +LF E + +G++P++V +N +
Sbjct: 673 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G +D A  ++  M +  + PD  TYNTL+ G CL GRV+ A++L   M   G
Sbjct: 733 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 52/272 (19%)

Query: 35  PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-------------FPDLYTHSILINCF 81
           P S  N++L   A  + + T L L+ R+ S  L              P     ++  + F
Sbjct: 416 PSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFALFADMF 475

Query: 82  -CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
             ++   +  F ++ R L S   P       L ++ +P+A+TYNT+I G C +G V  A 
Sbjct: 476 RLRLPLCTTTFNIMLRHLCSAGKP-ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAAL 534

Query: 141 ELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMD 198
           ++  +M+++  + PN  TY +VI G+C     +EA ++F EM+ +G V+P  V +N ++ 
Sbjct: 535 DIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG 594

Query: 199 ELCKNGKMDEASSLLDLMIQHGV-----------------------------------RP 223
             C  GK+D A    D M++ GV                                    P
Sbjct: 595 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAP 654

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D FTYN L++G C  G V  A E+F +M   G
Sbjct: 655 DVFTYNILINGHCKEGNVKKALEIFENMSRRG 686



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL IF+ M R       V ++  ++  L+K         LF      G+ PDL  ++ L
Sbjct: 674 KALEIFENMSRRGVRAT-VVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           IN     G +   F ++G + +    PD VT+ +L++ +C                    
Sbjct: 733 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGI 792

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +TYNT+I G   +G V  A  +  +M +K   P ++TY ++I+G C     ++A+ 
Sbjct: 793 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 852

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL 200
           +  EM++ G+ P+  T+  +++ L
Sbjct: 853 MVKEMVENGITPDDSTYISLIEGL 876


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 14/240 (5%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ +F  M + +   P   S+  +   L         L  ++ +   G+ P + + +
Sbjct: 101 PLDAVRVFRKM-KEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLN 159

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +LI   CK        +   RI R    P+        + C P + TY T+I GLC+ G 
Sbjct: 160 VLIKALCKNSGTMDAAL---RIFRE--MPN--------RGCPPHSYTYGTLIXGLCRLGK 206

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +AKELF +M+ K   P VVTY S+I G C + D + A RL  EM  +G++PNV T++ 
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +MD  CK+G    A  LLD+M+     P+  TY+TL+ G C  G++  A E+   M+  G
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQG 326



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSIL 77
           AL  + YM  M   PP V+S N+++  L KN    D  L +F+ + + G  P  YT+  L
Sbjct: 139 ALRFYRYMREM-GIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTL 197

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   C++G++     +   +                K C P  +TY ++I GLC+   +D
Sbjct: 198 IXGLCRLGKIGEAKELFKEME--------------TKACSPTVVTYXSLIHGLCQSKDLD 243

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L  +M  K +KPNV TY+S++ G C +   + A  L   M+ +   PN++T++ ++
Sbjct: 244 SAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLV 303

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
             LCK GK+ EA  +LD M   G+RPDA  Y  ++ GFC
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC 342



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  +F KMK+   +P+  +Y +V       N    A R +  M + G+ P+V + NV++ 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 199 ELCKN-GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LCKN G MD A  +   M   G  P ++TY TL+ G C  G++  AKELF  ME+  C
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKAC 222


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +FD + +    P  VS +N ++    +    D    L   ++++G+
Sbjct: 155 EGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFKLKSAMHASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT              T+I
Sbjct: 209 XPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFT--------------TLI 254

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK G VD A E++ +M  +++ P+++TY ++I G C   D N+A  L  EM  +G++
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLK 314

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+ +T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 248 FVSMESMG 255
              M S+G
Sbjct: 375 MREMLSVG 382



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 23/229 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 203 MHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L     PD++T+ +LI                     K  KPD ITY T
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTT 322

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVG 382

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++P+  T+ +I++E+CK G + + S LL  M   G  P   TYN L++G
Sbjct: 383 LKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++     G    LY  +IL + FCK G
Sbjct: 97  LTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                         PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G +++A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 78/131 (59%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N +    CK+G +  A+ +F  +    ++P+VV+Y +++ G+    D +E  +L   M 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             GV P+V T++V+++ LCK  KMD A+ L D M+  G+ P+  T+ TL+DG C  GRV+
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 243 HAKELFVSMES 253
            A E++  M S
Sbjct: 265 LAMEIYKQMLS 275



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 62/139 (44%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E ++ G   ++  FN++    CK G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++   +L  +M + G
Sbjct: 189 RLGDLDEGFKLKSAMHASG 207


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   ++  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG 306


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K  +    L +F+ ++  G+   + T++ LI    K G+V     +
Sbjct: 659 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 718

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
               +R    PD+V + +LI                     K   PD +TYNT++ GLC 
Sbjct: 719 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 778

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A++L  +M ++ ++P++VTY ++I G+    D  +A R+  EMM++G  P ++T
Sbjct: 779 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 838

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCKNG+ D+A +++  M+++G+ PD  TY +L++G 
Sbjct: 839 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +        L + +   GL PD++T++ILIN  CK G V     +  
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 685

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R      VVT+T+LI                     +  +PD + YN +I+     G
Sbjct: 686 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 745

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E+  +M+ K + P+ VTY +++RG C     +EA++L  EM ++G+QP++VT+N
Sbjct: 746 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 805

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + + M+  G  P   TYN L+ G C  G+ + A+ +   M   
Sbjct: 806 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865

Query: 255 G 255
           G
Sbjct: 866 G 866



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD ML      P    +N ++G        DT L    R+   G+   + T+++
Sbjct: 572 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 631

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR +  + ++  +      PDV               TYN +I+G CK+G V
Sbjct: 632 LVHALFMDGRGTEAYELVEEMGGKGLAPDV--------------FTYNILINGHCKEGNV 677

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F  M  + V+  VVTYT++I          E  +LF E + +G++P++V +N +
Sbjct: 678 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G +D A  ++  M +  + PD  TYNTL+ G CL GRV+ A++L   M   G
Sbjct: 738 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 122/277 (44%), Gaps = 52/277 (18%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-------------FPDLYTHSI 76
           H    P S  N++L   A  + + T L L+ R+ S  L              P     ++
Sbjct: 416 HLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL 475

Query: 77  LINCF-CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
             + F  ++   +  F ++ R L S   P       L ++ +P+A+TYNT+I G C +G 
Sbjct: 476 FADMFRLRLPLCTTTFNIMLRHLCSAGKP-ARALELLRQMPRPNAVTYNTVIAGFCSRGR 534

Query: 136 VDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTF 193
           V  A ++  +M+++  + PN  TY +VI G+C     +EA ++F EM+ +G V+P  V +
Sbjct: 535 VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMY 594

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGV-------------------------------- 221
           N ++   C  GK+D A    D M++ GV                                
Sbjct: 595 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 654

Query: 222 ---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               PD FTYN L++G C  G V  A E+F +M   G
Sbjct: 655 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 691



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL IF+ M R       V ++  ++  L+K         LF      G+ PDL  ++ L
Sbjct: 679 KALEIFENMSRRGVRAT-VVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           IN     G +   F ++G + +    PD VT+ +L++ +C                    
Sbjct: 738 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGI 797

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +TYNT+I G   +G V  A  +  +M +K   P ++TY ++I+G C     ++A+ 
Sbjct: 798 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 857

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL 200
           +  EM++ G+ P+  T+  +++ L
Sbjct: 858 MVKEMVENGITPDDSTYISLIEGL 881


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  +++    +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M+ K +KP+ +TYT++I G C   D + A  L   M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC    V  A +L   M+
Sbjct: 349 YTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RQG 411



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 21/247 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +++A +LF +M DK + PN VT+T++I G C     + A   + +M+ Q
Sbjct: 211 VLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
              P+++T+N ++  LCK G + +A  LLD M   G++PD  TY TL+DG C  G ++ A
Sbjct: 271 CFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSA 330

Query: 245 KELFVSM 251
            EL  +M
Sbjct: 331 FELRETM 337



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    +    LF  +   GL P+  T + LI+  CK G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V        ++L  CF PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A EL   M  ++++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK   +  A+ LL  M + G  P
Sbjct: 377 LKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM+ +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + ++G+ PD+YT+S+LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +++   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D+G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +FD ML      P    +N ++G        D  L   + +   G+   + T+++
Sbjct: 200 EDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNL 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++      R S  + VL  + ++ F+PDV               TYN +I+G CK+G  
Sbjct: 260 LMHALFMDARASDAYAVLEEMQKNGFSPDV--------------FTYNILINGYCKEGNE 305

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F +M  K V+   VTYTS+I  F       E  RLF   + +G++P+VV +N +
Sbjct: 306 KKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNAL 365

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C  G M+ A  ++  M +  + PD  TYNTL+ GFCL GR++ A+ L   M   G
Sbjct: 366 INSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRG 424



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +       ++ + +   G  PD++T++ILIN +CK G       V  
Sbjct: 254 VATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFE 313

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            + +       VT+TSLI V                      +PD + YN +I+  C  G
Sbjct: 314 EMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGG 373

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +++A E+  +M+ K + P+ +TY +++RGFC     +EA+ L  EM  +G+QP++V++N
Sbjct: 374 DMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYN 433

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + D M+  G  P   TYN L+ G C   + + A+ L   M + 
Sbjct: 434 TLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAK 493

Query: 255 G 255
           G
Sbjct: 494 G 494



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K  +    L +F+ ++  G+     T++ LI  F + G+V     +
Sbjct: 287 PDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRL 346

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
               ++    PDVV + +LI                     K   PD +TYNT++ G C 
Sbjct: 347 FNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCL 406

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A+ L  +M  + ++P++V+Y ++I G+    D  +A R+  EMMD+G  P ++T
Sbjct: 407 LGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMT 466

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCK  + D+A +L+  M+  G+ PD  TY +L++G 
Sbjct: 467 YNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 55/295 (18%)

Query: 12  TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPD 70
           + ++ + ALC    +  +  SP   S  +++L   A  + + T L L+ +L S  +  P 
Sbjct: 29  SALSADRALCPLSVLPHLSASP---SLPHLLLTASAAARPHATSLRLYAQLKSLSVPIPV 85

Query: 71  LYTHSILINC--------FCKMGRV-----SHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
              H +L +         F  + R+     +  F ++ R L +   P V     L ++ +
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKP-VRALELLRQMPR 144

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+A+TYNT+I G C +G V  A E+  +M+++  + P+  TY ++I G+C      +A +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 177 LFIEMMDQG-VQPNVVTFNVIMDELCKNGKMD---------------------------- 207
           +F EM+ +G V P+ V +N ++   C  GK+D                            
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 208 -------EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                  +A ++L+ M ++G  PD FTYN L++G+C  G    A E+F  M   G
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKG 319



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N ++         D   +L   +   G+ PDL +++ LI+ +   G +     
Sbjct: 391 PPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALR 450

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   ++   F P +              +TYN +I GLCK    D A+ L  +M  K + 
Sbjct: 451 VRDEMMDKGFNPTL--------------MTYNALIQGLCKIRQGDDAENLMKEMVAKGIT 496

Query: 153 PNVVTYTSVIRGFCYAND 170
           P+  TY S+I G    ++
Sbjct: 497 PDDSTYISLIEGLTTEDE 514


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 136 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFR 195

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 196 LKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 255

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 256 KNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 315

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 316 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREM 375

Query: 252 ESMG 255
            S+G
Sbjct: 376 LSVG 379



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 207 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEI 266

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 267 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 326

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V Y ++I G C      +A+++  EM+  G++P+  T
Sbjct: 327 EGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGT 386

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 387 YTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +  H D    L   + ++G+
Sbjct: 152 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGHLDEGFRLKSAMLASGV 205

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 206 LPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAME 265

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 266 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 325

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 326 KEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 385

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 386 TYTMIINEFCKKGDVWKGSKLLKEMQRNG 414



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 94  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 153

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                         PD  TY+
Sbjct: 154 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYS 213

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++  M+ Q
Sbjct: 214 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQ 273

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 274 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 333

Query: 245 KE 246
            E
Sbjct: 334 FE 335



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 66  RSDIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 125

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 126 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 185

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 186 RLGHLDEGFRLKSAMLASG 204


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+++T+ T+IDG C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 241

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 301

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK+G +D A      MIQ   R D   Y  L+ G C  G    A+++   M
Sbjct: 302 TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREM 361

Query: 252 ESMG 255
            S+G
Sbjct: 362 LSVG 365



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 139

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 140 DIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 199

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 200 VLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 260 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 319

Query: 245 KE 246
            E
Sbjct: 320 FE 321



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 193 PDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEI 252

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 253 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCK 312

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A E   +M  +N + + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 313 DGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDART 372

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 373 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 217

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 218 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K +KP+ +TYT++I G C   D + A      M+ +  + + V 
Sbjct: 278 KGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVV 337

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G   +A  +L  M+  G++PDA TY  +++ FC  G V    +L   M+
Sbjct: 338 YTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 397

Query: 253 SMG 255
             G
Sbjct: 398 RDG 400



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 52  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 172 RLGDLDEGFRLKSAMLASG 190


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 22/249 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ + D ++ +    P V  +N ++  L +N+  DT L +   +   G+ PD+ T++ 
Sbjct: 160 QEAMSLVDQIVGL-GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI      G+      +L  ++R    PDV+TF+++I V                     
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TYN++I+GLC  G +D+AK++   M  K   PN VTY +++ G+C +   ++A 
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAM 338

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++   M   GV  +  T+N +    C+ G+ + A  +L  M+  GV PD +T+N LLDG 
Sbjct: 339 KILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGL 398

Query: 236 CLTGRVNHA 244
           C  G++  A
Sbjct: 399 CEHGKIEKA 407



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 19/251 (7%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           ERL+S     + +I  N+AL +F  M    P P  V  F+ +L  +AK K Y+ V+SLF+
Sbjct: 43  ERLRSG----LHSIKFNDALTLFCDMAESRPLPSIVD-FSRLLVAIAKLKKYEAVISLFR 97

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
            +   G+  DLY+ S LI+CFC+  R+S     LG++++  F P +VTF SL+       
Sbjct: 98  HIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLV------- 150

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
                  +G C    + +A  L  ++     +PNVV Y ++I   C     + A  +   
Sbjct: 151 -------NGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNH 203

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G++P+V+T+N ++  L  +GK   ++ +L  M++ G+ PD  T++ ++D F   G+
Sbjct: 204 MEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQ 263

Query: 241 VNHAKELFVSM 251
           +  AK+ +  M
Sbjct: 264 LLEAKKQYDEM 274



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL + ++M +M   P  V ++N ++  L  +  +     +   +   G+ PD+ T S 
Sbjct: 195 DTALDVLNHMEKMGIRPD-VITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSA 253

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK- 117
           +I+ F K G++         +++    P++VT+ SLI                   V K 
Sbjct: 254 MIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKG 313

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+A+TYNT+++G CK   VD A ++   M    V  +  TY ++ +G+C A  +N A+
Sbjct: 314 FFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAE 373

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++   M+  GV P++ TFN+++D LC++GK+++A   L+ + +        TYN ++ G 
Sbjct: 374 KVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGM 433

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +V  A  LF S+   G
Sbjct: 434 CKANKVEDAWYLFCSLALKG 453



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 22/216 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA   +D M++     P + ++N ++  L  +   D    +   + S G FP+  T++ L
Sbjct: 266 EAKKQYDEMIQ-RSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTL 324

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           +N +CK  RV     +L  +       D  T+ +L +  C+                   
Sbjct: 325 VNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGV 384

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T+N ++DGLC+ G ++KA      ++       ++TY  +I+G C AN   +A  
Sbjct: 385 LPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWY 444

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           LF  +  +GV P+V+T+  +M  L +     EA  L
Sbjct: 445 LFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHEL 480



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 23/194 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + ++M+     P  V+ +N ++    K+K  D  + +   ++  G+  D +T++ 
Sbjct: 300 DEAKKVLNFMVSKGFFPNAVT-YNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNT 358

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCKP----------- 118
           L   +C+ G+ +    VL R++     PD+ TF  L+       K+ K            
Sbjct: 359 LYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSE 418

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                ITYN II G+CK   V+ A  LF  +  K V P+V+TYT+++ G      W EA 
Sbjct: 419 TVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAH 478

Query: 176 RLFIEM-MDQGVQP 188
            L+ +M  D G+ P
Sbjct: 479 ELYRKMKKDDGLMP 492



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 72/138 (52%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  + ++ ++  + K    +    LF  ++   +  ++ +++++I  FC  +  + A   
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +MM  G +P++VTF  +++  C   ++ EA SL+D ++  G  P+   YNT++D  C 
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 190

Query: 238 TGRVNHAKELFVSMESMG 255
             +V+ A ++   ME MG
Sbjct: 191 NRQVDTALDVLNHMEKMG 208



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 56/119 (47%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A  LF  M +    P++V ++ ++        +     LF  +   G+  ++ +F+ +
Sbjct: 55  NDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTL 114

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D  C+  ++  A S L  M++ G  P   T+ +L++GFC   R+  A  L   +  +G
Sbjct: 115 IDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLG 173



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 49/98 (50%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y   +R   ++  +N+A  LF +M +    P++V F+ ++  + K  K +   SL   + 
Sbjct: 41  YRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIE 100

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+  D ++++TL+D FC   R++ A      M  +G
Sbjct: 101 ILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLG 138


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  + ++P+ +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKI 299

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 300 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREM 359

Query: 252 ESMG 255
            ++G
Sbjct: 360 LNVG 363



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 191 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 250

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 251 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCK 310

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM++ G++P+  T
Sbjct: 311 EGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRT 370

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 371 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 136 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 189

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI              
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  +   PD ITYNT+I GLCK+G + +A  L  +M  K +KP+ +TYT++I G C
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCC 309

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD+ 
Sbjct: 310 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSR 369

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 370 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 398



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 78  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 197

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M    ++PD  TY TL+DG C  G ++ A
Sbjct: 258 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSA 317

Query: 245 KE 246
            E
Sbjct: 318 FE 319



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 50  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 170 RLGDLDEGFRLKSAMLASG 188



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D M      P  ++   ++ GC  K    D+     KR+    +  D   ++ 
Sbjct: 280 KQAHHLIDEMSMKELKPDKITYTTLIDGC-CKEGDLDSAFEHRKRMIQENIRLDEVAYTA 338

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ GR      +L  +L     PD  T+T               II+  CK+G V
Sbjct: 339 LISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYT--------------MIINEFCKKGDV 384

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRG 164
            K  +L  +M+     P+VVTY  ++ G
Sbjct: 385 WKGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 195 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 254

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 255 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 314

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +  D   Y  L+ G C  GR   A+++   M
Sbjct: 315 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREM 374

Query: 252 ESMG 255
            S+G
Sbjct: 375 LSVG 378



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 206 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 265

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 266 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCK 325

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N+  + V YT++I G C      +A+++  EM+  G++PN  T
Sbjct: 326 EGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRT 385

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 386 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 93  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDG 152

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 153 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 212

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++  M+ Q
Sbjct: 213 VLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 272

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 273 SLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 332

Query: 245 KE 246
            E
Sbjct: 333 FE 334



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 151 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 204

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 264

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A  L  +M  K +KP+ +TYT++I G C
Sbjct: 265 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCC 324

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + +  + V +  ++  LC+ G+  +A  +L  M+  G++P+  
Sbjct: 325 KEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXR 384

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 385 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 413



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 43/75 (57%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+   G 
Sbjct: 129 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 188

Query: 241 VNHAKELFVSMESMG 255
           ++    L  +M + G
Sbjct: 189 LDEGFRLKSAMLASG 203


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 56/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N  +  L +    D  + +  RL   G  PD+ T++ LI   CK  +     V 
Sbjct: 249 PNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           LG+++     PD  T+ +LI   CK                    PD  TY ++IDGLC 
Sbjct: 309 LGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCH 368

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  ++A  LF +   K +KPNV+ Y ++I+G        EA +L  EM ++G+ P V T
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQT 428

Query: 193 FNVIMDELCKNG-----------------------------------KMDEASSLLDLMI 217
           FN++++ LCK G                                   KM+ A  +LD+M+
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMM 488

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +GV PD +TYN+LL+G C T +     E + +M   GC
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGC 527



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 22/255 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M   +   P V S+N ++  L  + ++D    ++ R+   G+ PD+Y+ +I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI--------------- 121
            +  FC+  R      +L  +       +VV + +++     +                 
Sbjct: 152 RMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211

Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                 T+N ++  LCK+G V + ++L  K+  + V PN+ TY   I+G C   + + A 
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+   ++DQG +P+VVT+N ++  LCKN K  EA   L  ++  G+ PD+FTYNTL+ G+
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 236 CLTGRVNHAKELFVS 250
           C  G V  A+ + V+
Sbjct: 332 CKGGMVQLAERILVN 346



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 15/238 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +F+  L      P V  +N ++  L+          L   ++  GL P++ T +I
Sbjct: 373 NRALALFNEALG-KGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNI 431

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+N  CKMG VS    ++  ++   + PD+ TF              N +I G   Q  +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF--------------NILIHGYSTQLKM 477

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A E+   M D  V P+V TY S++ G C  + + +    +  M+++G  PN+ TFN++
Sbjct: 478 ENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++ LC+  K+D+A  LL+ M    V PDA T+ TL+DGFC  G ++ A  LF  ME +
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEV 595



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S+FN +L  L K         L  ++   G+ P+L+T++  I   C+ G +     ++G
Sbjct: 216 LSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVG 275

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R++     P            KPD +TYN +I GLCK     +A+    K+ ++ ++P+ 
Sbjct: 276 RLIDQ--GP------------KPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDS 321

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G+C       A+R+ +  +  G  P+  T+  ++D LC  G+ + A +L + 
Sbjct: 322 FTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNE 381

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  G++P+   YNTL+ G    G +  A +L   M   G
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKG 421



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 16/248 (6%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G  T +    AL I D M+  +   P V ++N +L  L K   Y+ V+  +K +   G  
Sbjct: 470 GYSTQLKMENALEILDVMMD-NGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           P+L+T +IL+   C+  ++     +L  +                K   PDA+T+ T+ID
Sbjct: 529 PNLFTFNILLESLCRYHKLDKALGLLEEMKN--------------KSVNPDAVTFGTLID 574

Query: 129 GLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CK G +D A  LF KM++   V  +  TY  +I  F    +   A++LF EM+D+ + 
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+  T+ +++D  CK G +D     L  M+++G  P   T   +++  C+  RV  A  +
Sbjct: 635 PDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGI 694

Query: 248 FVSMESMG 255
              M   G
Sbjct: 695 IHRMVQKG 702



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLFI 179
           TY +II+ L   G  +  +E+ + M+ +NV  +++   Y   ++ +       EA  +F 
Sbjct: 42  TYRSIIEKLGLYGKFEAMEEVLVDMR-QNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFE 100

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            M     +P V ++N IM  L  +G  D+A  +   M   G+ PD +++   +  FC T 
Sbjct: 101 RMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTS 160

Query: 240 RVNHAKELFVSMESMGC 256
           R + A  L  +M S GC
Sbjct: 161 RPHAALRLLNNMSSQGC 177



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 63/124 (50%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G V +A  +F +M   + +P V +Y +++     +  +++A ++++ M D+G+ P+V 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +F + M   C+  +   A  LL+ M   G   +   Y T++ GF      +   ELF  M
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKM 207

Query: 252 ESMG 255
            + G
Sbjct: 208 LASG 211


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 27/244 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++   ++    D  L LFK L+S G  P+  T++ +I       R+      
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
               L      DV+++T++IK                      C P+ + Y  +IDGL K
Sbjct: 357 FDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++   + F  M   +  P   TYT VI G C A    +A ++F +M+ +G  P+ +T
Sbjct: 411 AGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D   K  KMDEA  LLD+M+  G  P A TY +++ GFC    +N AKE+   M 
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 530

Query: 253 SMGC 256
             GC
Sbjct: 531 ERGC 534



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 121/261 (46%), Gaps = 28/261 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA   FD  L        V S+  ++  LA +K  D    LF++L + G  P++  ++ 
Sbjct: 351 EEAKAFFDEAL-------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTA 403

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+   K GR+  G      +  S   P   T+T +I                     K 
Sbjct: 404 VIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKG 463

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD ITY T+IDG  K   +D+A++L   M  K  +P  VTY S++ GFC  +  NEAK
Sbjct: 464 CVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAK 523

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M ++G +P +  F  ++      G+ +EA  +L  M   G  PD   Y +L+D  
Sbjct: 524 EVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 583

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             TGRV  A+ +F SM   GC
Sbjct: 584 FSTGRVPEARHVFDSMIEKGC 604



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  LA     D     F  +   G  PD+   + LI+ FCK G+   G ++
Sbjct: 53  PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHML 112

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L + L+  F PDV  +TS+I                       C PDA  Y  +ID LCK
Sbjct: 113 LNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCK 171

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A ELF +M+      + VT+ ++I         +EA  L+ EM+++G +P +  
Sbjct: 172 LGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEV 231

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            + ++  LCK GK+DEA+ +   ++   V      YN+L+DG+C  GRV+   +L + M
Sbjct: 232 QDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQM 290



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D ML   P P  V+  +I+ G   K    +    +  ++   G  P L+  + 
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ +   GR    + VL  +      PDV+ +TSLI                     K 
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PDA+TY TII    K G V+ A E+   M    V P+   Y S++ G+      ++A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDG 234
            ++  M+  G++PN VTFNV+M  L K+GK D A SL   M++   V P   +Y  L+DG
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GRV+ A   F  M   G
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRG 744



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 16/240 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+    +P  ++ +  ++   +K  + +    + + +  +G+ PD + ++ L
Sbjct: 591 EARHVFDSMIEKGCAPDALT-YGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 649

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ + K+ RV   F V  R++ S                KP+A+T+N ++ GL K G  D
Sbjct: 650 MDGYVKLERVDQAFGVYDRMVASGI--------------KPNAVTFNVLMHGLFKDGKTD 695

Query: 138 KAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +A  LF +M +K+ V P +V+YT +I G   A   +EA   F EM+D+G+ P   T+  +
Sbjct: 696 RAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSL 755

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G++ EA  L++ M++ GV PD   Y+ L+ G   +  V+ A ++F  M   GC
Sbjct: 756 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGC 815



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+  L+     P V ++  ++  L K    +  L  F+ ++ +   P   T+++
Sbjct: 380 DEACELFE-KLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTV 438

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  CK   +     V  ++++    PD +T+T+LI                     K 
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P A+TY +I+ G CK   +++AKE+  +M+++  +P +  +TS++  +       EA 
Sbjct: 499 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAY 558

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++  EM  +G  P+V+ +  ++D L   G++ EA  + D MI+ G  PDA TY T++  F
Sbjct: 559 QVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNF 618

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G V  A E+   M   G
Sbjct: 619 SKIGNVEAAGEILELMAKSG 638



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 19/236 (8%)

Query: 23  FDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
            D +  MH +   P V + NI+L  L K +  D  + LF  + S G  P + +++ +I+ 
Sbjct: 5   LDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISG 64

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKA 139
              + ++   +                 F S+I   C+PD I + T+I G CK G   + 
Sbjct: 65  LASIDKMDEAYKF---------------FNSMIDNGCEPDVIAFTTLIHGFCKAG-QPQV 108

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             + L    K  +P+V  YTSVI G+C A D +   ++  EM+  G  P+   + V++D 
Sbjct: 109 GHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDP 168

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK G++DEA  L + M + G   D  T+ TL++     G+++ A EL+  M   G
Sbjct: 169 LCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 17/205 (8%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           +  L   K +++TGL PD+   +I++N  CK  ++                  +  F  +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKA---------------IELFLEM 46

Query: 113 IKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             + C+P  ++YNT+I GL     +D+A + F  M D   +P+V+ +T++I GFC A   
Sbjct: 47  PSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP 106

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
                L  + + +  +P+V  +  ++   CK G +D    +L+ M+  G  PDA  Y  L
Sbjct: 107 QVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVL 165

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +D  C  GRV+ A ELF  M   GC
Sbjct: 166 IDPLCKLGRVDEAYELFERMRKSGC 190



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 27/244 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++ +++  L K    D    LF+R+  +G   D  T   LI      G++     +
Sbjct: 157 PDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACEL 216

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKP--------------------DAITYNTIIDGLCK 132
              ++   + P +    SLI  +CK                       + YN+++DG CK
Sbjct: 217 YREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCK 276

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD   +L L+M + +  P++ TY  ++ GF  AN  ++A  LF  +   G +PN  T
Sbjct: 277 LGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAAT 336

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I+  L    +M+EA +  D  +      D  +Y T++ G   + R++ A ELF  ++
Sbjct: 337 YTTIIQGLYDAQRMEEAKAFFDEAL------DVISYTTVIKGLADSKRIDEACELFEKLK 390

Query: 253 SMGC 256
           + GC
Sbjct: 391 TAGC 394



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++A +   +M    + P+VV    V+ G C A   ++A  LF+EM   G +P +V++N 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           ++  L    KMDEA    + MI +G  PD   + TL+ GFC  G+
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ 105



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 21/173 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F  ML     PP + S+ I++  L K        S F+ +   G+ P+ +T++ 
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTS 754

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI    K GR+     ++  +++    PDV  +++LI               GL     V
Sbjct: 755 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT--------------GLIDSSMV 800

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGV 186
           D A ++F +M  +   PN VTY  + RGF  A    D    K+ F     QGV
Sbjct: 801 DTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHF----SQGV 849



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+EA   L  M   G+ PD    N +L+G C   +++ A ELF+ M SMGC
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGC 51


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 22/263 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P++AL IF  M  +    P + S+N +L  L ++  +D   S F    + GL P+L T++
Sbjct: 69  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 128

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI   C+  +      +L  +    F+PDV ++ +LI                     +
Sbjct: 129 ILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 188

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNE 173
              PD   YN +IDG  K+G +  A E++ ++ K  +V PN+ +Y  +I G C    ++E
Sbjct: 189 GVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 248

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +  ++  M       ++ T++ ++  LC +G +D A+ +   M ++GV PD   YNT+L+
Sbjct: 249 SFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 308

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   GR+    EL+  ME  GC
Sbjct: 309 GYLRAGRIEECLELWKVMEKEGC 331



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 122/240 (50%), Gaps = 22/240 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M +    P P     ++ G +  +K  D  L  F  + S G FP + T++ 
Sbjct: 421 DEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDA-LRFFGNMVSKGCFPTVVTYNT 479

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---------------------SLIKV 115
           LIN   K  R S  + ++  +L+  + P+++T++                     +L K 
Sbjct: 480 LINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKG 539

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD   +N II GLC  G V+ A +L+ +MK +N  PN+VT+ +++ GF    D+  A 
Sbjct: 540 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERAS 599

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +++  ++  G+QP+++++N+ +  LC   ++ +A   L+  +  GV P A T+N L+ G+
Sbjct: 600 KIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGY 659



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++  L +N   D  +S+++ L       D  T+ +L++  CK G ++    +L 
Sbjct: 334 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 393

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
                    D   ++S+I                       CKP+    N +I+G  +  
Sbjct: 394 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRAS 453

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A   F  M  K   P VVTY ++I G   A  ++EA  L  EM+ +G +PN++T++
Sbjct: 454 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYS 513

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++M+ LC+  K+D A +L    ++ G +PD   +N ++ G C +G+V  A +L+  M+  
Sbjct: 514 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 573

Query: 255 GC 256
            C
Sbjct: 574 NC 575



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 117/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++  LAKN +    L LF  +   G+ PD+  ++ILI+ F K G + +   +
Sbjct: 157 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 216

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+L+    P V           P+  +YN +I+GLCK G  D++ E++ +MK      
Sbjct: 217 WERLLKG---PSVY----------PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 263

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY+++I G C + + + A R++ EM + GV P+VV +N +++   + G+++E   L 
Sbjct: 264 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 323

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +M + G R    +YN L+ G     +V+ A  ++  +    C
Sbjct: 324 KVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDC 365


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 15/234 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M  M    P V S+ IML   A       +  LF  +   G+ PD+YT ++LI  +
Sbjct: 16  VFDTM-AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 74

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
              G +    ++   +                   KP  +TY T+I  LC+ G +D A E
Sbjct: 75  ANCGMLDKAMIIFNEMRDHG--------------VKPHVVTYMTVIAALCRIGKMDDAME 120

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
            F +M D+ V P+   Y  +I+GFC      +AK L  E+M+ G++ ++V F  I++ LC
Sbjct: 121 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 180

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G++ +A ++ DL +  G+ PDA  YN L+DG+CL G++  A  +F +M S G
Sbjct: 181 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 234



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 106/200 (53%), Gaps = 1/200 (0%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           ++F    + GL PD   +++L++ +C +G++     V   ++ +   P+VV    L K  
Sbjct: 190 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG-EMLQKGI 248

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP  I YN IIDGL + G    AK  F +M +  +  N  TY+ V+RG      ++EA  
Sbjct: 249 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIF 308

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF E+    V+ +++T N ++  + +  +++EA  L   + + G+ P A TY+ ++    
Sbjct: 309 LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLI 368

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G V  A+++F SM++ GC
Sbjct: 369 KEGLVEEAEDMFSSMQNAGC 388



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 66/126 (52%)

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G + + +++F  M  K   P+V +YT ++ G+       +   LF  M+  G+ P+
Sbjct: 4   LCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 63

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + TFNV++      G +D+A  + + M  HGV+P   TY T++   C  G+++ A E F 
Sbjct: 64  IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFN 123

Query: 250 SMESMG 255
            M   G
Sbjct: 124 QMIDQG 129



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 1/157 (0%)

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKEL 142
           M + ++  V+ G     CF   +  F  L  +  K D IT NT+I G+ +   V++AK+L
Sbjct: 285 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 344

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  +    + P  VTY+ +I          EA+ +F  M + G +P+    N ++ EL K
Sbjct: 345 FASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLK 404

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
             ++  A + L  + +     +  T   L+D F   G
Sbjct: 405 KNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 441



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++I+L  L KN+ +D  + LFK L +  +  D+ T + +I    +  RV     +   I
Sbjct: 289 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 348

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            RS   P           C   A+TY+ +I  L K+G V++A+++F  M++   +P+   
Sbjct: 349 SRSGLVP-----------C---AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 394

Query: 158 YTSVIRGFCYANDWNEA 174
              V+R     N+   A
Sbjct: 395 LNHVVRELLKKNEIVRA 411



 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           M  LCK GK+ E   + D M   G  PD F+Y  +L+G+   G +    +LF
Sbjct: 1   MGSLCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF 52


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 126/261 (48%), Gaps = 27/261 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL + + M  M   P   +  +++LG L K    +    +  R+   G  PD  T+  
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327

Query: 77  LINCFCKMGRVS---------------------HGFVVLGRILRS-CFTPDVVTFTSLIK 114
           L+N  CK+GRV                      HGFV  GR+  +     D+VT   ++ 
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV- 386

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  TYN++I G  K+G V  A E+   M++K  KPNV +YT ++ GFC     +EA
Sbjct: 387 ---PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +  EM   G++PN V FN ++   CK  ++ EA  +   M + G +PD +T+N+L+ G
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C    + HA  L   M S G
Sbjct: 504 LCEVDEIKHALWLLRDMISEG 524



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 21/264 (7%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G +T    ++A  +   M+  +   P V ++N ++    K       L +   + + G  
Sbjct: 362 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
           P++Y+++IL++ FCK+G++   + VL  +      P+ V F  LI               
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K CKPD  T+N++I GLC+   +  A  L   M  + V  N VTY ++I  F  
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             +  EA++L  EM+ QG   + +T+N ++  LC+ G++D+A SL + M++ G  P   +
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS 601

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
            N L++G C +G V  A E    M
Sbjct: 602 CNILINGLCRSGMVEEAVEFQKEM 625



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V S+ I++    K    D   ++   +++ GL P+    + LI+ FCK  R
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNT 125
           +     +   + R    PDV TF SLI  +C+ D I                    TYNT
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I+   ++G + +A++L  +M  +    + +TY S+I+G C A + ++A+ LF +M+  G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+ ++ N++++ LC++G ++EA      M+  G  PD  T+N+L++G C  GR+    
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 246 ELFVSMESMG 255
            +F  +++ G
Sbjct: 655 TMFRKLQAEG 664



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    FN ++    K       + +F+ +   G  PD+YT + LI+  C++  + H   +
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++      + VT+ +LI                          D ITYN++I GLC+
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VDKA+ LF KM      P+ ++   +I G C +    EA     EM+ +G  P++VT
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           FN +++ LC+ G++++  ++   +   G+ PD  T+NTL+   C  G V  A
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 18/245 (7%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P    +  ++  L+K    +  L L + +   G  PD  T + +I   CK  R++ 
Sbjct: 246 HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINE 305

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPDAITYNTIIDGLCK 132
              ++ R+L   F PD +T+  L+                 ++ KP+ + +NT+I G   
Sbjct: 306 AAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVT 365

Query: 133 QGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G +D AK +   M     + P+V TY S+I G+        A  +  +M ++G +PNV 
Sbjct: 366 HGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVY 425

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ +++D  CK GK+DEA ++L+ M   G++P+   +N L+  FC   R+  A E+F  M
Sbjct: 426 SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 485

Query: 252 ESMGC 256
              GC
Sbjct: 486 PRKGC 490



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 22/237 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ IF  M R     P V +FN ++  L +       L L + + S G+  +  T++ L
Sbjct: 477 EAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           IN F + G +     ++  ++      D +T+ SLIK +C+                   
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  I+ N +I+GLC+ G V++A E   +M  +   P++VT+ S+I G C A    +   
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +F ++  +G+ P+ VTFN +M  LCK G + +A  LLD  I+ G  P+  T++ LL 
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 26/263 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +   +   M  ++   P   S+N++L  L     +    ++F  + S  + P L+T  
Sbjct: 162 PGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFG 221

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
           +++  FC +  +     +L  + +    P+ V + +LI                      
Sbjct: 222 VVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 281

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PDA T+N +I GLCK   +++A ++  +M  +   P+ +TY  ++ G C     + A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
           K LF  +     +P +V FN ++     +G++D+A ++L D++  +G+ PD  TYN+L+ 
Sbjct: 342 KDLFYRI----PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   G V  A E+   M + GC
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGC 420



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           SP    ++N ++  L +    D   SLF+++   G  P   + +ILIN  C+ G V    
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
                ++    TPD+VTF              N++I+GLC+ G ++    +F K++ + +
Sbjct: 620 EFQKEMVLRGSTPDIVTF--------------NSLINGLCRAGRIEDGLTMFRKLQAEGI 665

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
            P+ VT+ +++   C      +A  L  E ++ G  PN  T+++++  +     +D 
Sbjct: 666 PPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K GF  +   L L+M++  + +P   +Y  V+      N    A  +F +M+ + + P +
Sbjct: 158 KAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTL 217

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF V+M   C   ++D A SLL  M +HG  P++  Y TL+       RVN A +L   
Sbjct: 218 FTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277

Query: 251 MESMGC 256
           M  MGC
Sbjct: 278 MFLMGC 283



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F   + +  S P + +FN ++  L +    +  L++F++L + G+ PD  T + L++  C
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119
           K G V    ++L   +   F P+  T++ L++   P 
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQ 717


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++NI++    K  +    L +F+ ++  G+   + T++ LI    K G+V     +
Sbjct: 212 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKL 271

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
               +R    PD+V + +LI                     K   PD +TYNT++ GLC 
Sbjct: 272 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 331

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A++L  +M  + ++P++VTY ++I G+    D  +A R+  EMM++G  P ++T
Sbjct: 332 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 391

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCKNG+ D+A +++  M+++G+ PD  TY +L++G 
Sbjct: 392 YNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +        L + +   GL PD++T++ILIN  CK G V     +  
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 238

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R      VVT+TSLI                     +  +PD + YN +I+     G
Sbjct: 239 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 298

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E+  +M+ K + P+ VTY +++RG C     +EA++L  EM  +G+QP++VT+N
Sbjct: 299 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 358

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + + M+  G  P   TYN L+ G C  G+ + A+ +   M   
Sbjct: 359 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418

Query: 255 G 255
           G
Sbjct: 419 G 419



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD ML      P    +N ++G        DT L    R+   G+   + T+++
Sbjct: 125 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 184

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR +  + ++  +      PDV               TYN +I+G CK+G V
Sbjct: 185 LVHALFMDGRGTEAYELVEEMGGKGLAPDV--------------FTYNILINGHCKEGNV 230

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F  M  + V+  VVTYTS+I          E  +LF E + +G++P++V +N +
Sbjct: 231 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G +D A  ++  M +  + PD  TYNTL+ G CL GRV+ A++L   M   G
Sbjct: 291 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 64/247 (25%)

Query: 55  VLSLFKRLNSTGLFPDLY---------THSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           +LS      +  LF D++         T +I++   C  G+ +    +L ++ R      
Sbjct: 16  LLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR------ 69

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRG 164
                       P+A+TYNT+I G C +G V  A ++  +M+++  + PN  TY +VI G
Sbjct: 70  ------------PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 117

Query: 165 FCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-- 221
           +C     +EA ++F EM+ +G V+P  V +N ++   C  GK+D A    D M++ GV  
Sbjct: 118 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 177

Query: 222 ---------------------------------RPDAFTYNTLLDGFCLTGRVNHAKELF 248
                                             PD FTYN L++G C  G V  A E+F
Sbjct: 178 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 237

Query: 249 VSMESMG 255
            +M   G
Sbjct: 238 ENMSRRG 244



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL IF+ M R       V ++  ++  L+K         LF      G+ PDL  ++ L
Sbjct: 232 KALEIFENMSR-RGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           IN     G +   F ++G + +    PD VT+ +L++ +C                    
Sbjct: 291 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGI 350

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +TYNT+I G   +G V  A  +  +M +K   P ++TY ++I+G C     ++A+ 
Sbjct: 351 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 410

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL 200
           +  EM++ G+ P+  T+  +++ L
Sbjct: 411 MVKEMVENGITPDDSTYISLIEGL 434


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 23/239 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S N+++  L K    +  L         G  PD  T + L+N  C+ G +  G  ++  +
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM 328

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           L   F  DV T+ SLI                     + C+P+ +TYNT+I  LCK+  V
Sbjct: 329 LEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV 388

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A EL   +  K V P+V T+ S+I+G C  ++   A  LF EM ++G  P+  T++++
Sbjct: 389 EAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LC   ++ EA  LL  M   G   +   YNTL+DG C   RV  A+++F  ME +G
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLG 507



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ I  +M+     P  V+ +N ++G L K  H +    L + L S G+ PD+ T + 
Sbjct: 354 DEAVEILHHMVSRDCEPNTVT-YNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI   C          +   +                K C PD  TY+ +I+ LC +  +
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKE--------------KGCDPDEFTYSILIESLCSERRL 458

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  L  +M+      NVV Y ++I G C  N   +A+ +F +M   GV  + VT+N +
Sbjct: 459 KEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTL 518

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ LCK+ +++EA+ L+D MI  G++PD FTY T+L  FC  G +  A ++  +M   GC
Sbjct: 519 INGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++  L    + +  + LF+ +   G  PD +T+SILI   C   R+    ++
Sbjct: 405 PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALML 464

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +  S               C  + + YNT+IDGLCK   V  A+++F +M+   V  
Sbjct: 465 LKEMELSG--------------CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSR 510

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY ++I G C +    EA +L  +M+ +G++P+  T+  ++   C+ G +  A+ ++
Sbjct: 511 SSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIV 570

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M  +G  PD  TY TL+ G C  GRV+ A +L  S++  G
Sbjct: 571 QNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKG 612



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 19/243 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP VS+FNI++  L K       + + + + + GL PD  T + L+  F +   V     
Sbjct: 196 PPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALR 255

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK------------------PDAITYNTIIDGLCKQ 133
           +   ++ S      V+   L+  +CK                  PD +T+N +++GLC+ 
Sbjct: 256 IKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRT 315

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +  E+   M +K  + +V TY S+I G C   + +EA  +   M+ +  +PN VT+
Sbjct: 316 GHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTY 375

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N ++  LCK   ++ A+ L  ++   GV PD  T+N+L+ G CLT     A ELF  M+ 
Sbjct: 376 NTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKE 435

Query: 254 MGC 256
            GC
Sbjct: 436 KGC 438



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 22/223 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  L KN        +F ++   G+     T++ LIN  CK  RV     ++ 
Sbjct: 477 VVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMD 536

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           +++     PD  T+T+++K                      C+PD +TY T+I GLCK G
Sbjct: 537 QMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAG 596

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD A +L   ++ K +      Y  VI+  C      EA RLF EMM++G  P+V+T+ 
Sbjct: 597 RVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYK 656

Query: 195 VIMDELCK-NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++   LC   G + EA      M++ G+ P+  ++  L +G C
Sbjct: 657 IVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLC 699



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 25/245 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M  +  S   V+ +N ++  L K+K  +    L  ++   GL PD +T++ ++  F
Sbjct: 499 IFDQMEMLGVSRSSVT-YNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYF 557

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI------------------- 121
           C+ G +     ++  +  +   PD+VT+ +LI  +CK   +                   
Sbjct: 558 CQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTP 617

Query: 122 -TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-WNEAKRLFI 179
             YN +I  LCK+    +A  LF +M +K   P+V+TY  V RG C       EA    +
Sbjct: 618 QAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTV 677

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM+++G+ P   +F  + + LC     D    L++++++ G    + T  +++ GF    
Sbjct: 678 EMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSET--SIIRGFLKIQ 735

Query: 240 RVNHA 244
           + N A
Sbjct: 736 KFNDA 740



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL +F +           S F+ +L  LA+   +D++L+L ++++S+ +  D  T  I
Sbjct: 73  SSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLI 132

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            +  +     +      L  ++   F              KPD   YN  +  L K   +
Sbjct: 133 FLETYATSHHLHAEINPLFLLMERDFA------------VKPDTRFYNVALSLLVKANKL 180

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
              + L  KM    V P+V T+  +IR  C A+    A  +  +M + G++P+  TF  +
Sbjct: 181 KLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTL 240

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M    +   ++ A  + +LM++ G    + + N L++G C  GR+  A
Sbjct: 241 MQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEA 288



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 22/232 (9%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI----LINCFCKMG 85
           HP PP  S  + +L  L +     + LSLF+  ++    P+   H      L+    + G
Sbjct: 51  HPLPPDFSP-SQLLDLLRRQPDSSSALSLFQWASAQ---PNYSAHPSVFHELLRQLARAG 106

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
                  +L ++  S    D  TF   ++       TY T            +   LFL 
Sbjct: 107 SFDSMLTLLRQMHSSKIPVDESTFLIFLE-------TYAT------SHHLHAEINPLFLL 153

Query: 146 M-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           M +D  VKP+   Y   +     AN     + L  +M+   V P+V TFN+++  LCK  
Sbjct: 154 MERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAH 213

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++  A  +L+ M  +G+RPD  T+ TL+ GF     V  A  +   M   GC
Sbjct: 214 QLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGC 265


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 29/252 (11%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS---TGLFPDLYTHSILI 78
           +F  M +   SP  VS   +++ C    +    VL   K LN+    G   D  T +++I
Sbjct: 211 MFVEMCQRGVSPDCVSFKLMVVACCNMGR----VLEAEKWLNAMVERGFIVDNATCTLII 266

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           + FC+ G V+       +++     P+V+ FT+LI                     +  K
Sbjct: 267 DAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWK 326

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           P+  T+ T+IDGLCK+G+ +KA  LFLK+ +    KPNV TYT++I G+C  +  N A+ 
Sbjct: 327 PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEM 386

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   M +QG+ PN  T+  ++D  CK G    A  L+DLM + G  P+ +TYN ++DG C
Sbjct: 387 LLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLC 446

Query: 237 LTGRVNHAKELF 248
             G ++ A  L 
Sbjct: 447 KKGSLDEAYRLL 458



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 22/237 (9%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           +++    +  + + V+  F ++   GL P++   + LIN  CK G +   F +L  ++R 
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 101 CFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQGFVDK 138
            + P+V T T+LI  +CK                     P+  TY  +I+G CK+  +++
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+ L  +M+++ + PN  TYT++I G C   ++  A  L   M  +G  PN+ T+N I+D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK G +DEA  LL+ +  HG++ D  TY  L+   C     N +   F  M  +G
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG 500



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 23/261 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSI 76
           +A  + + M+R     P V +   ++  L K    +    LF +L  S G  P+++T++ 
Sbjct: 312 QAFELLEEMVR-RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTA 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           +IN +CK  +++   ++L R+      P+  T+T+LI   CK                  
Sbjct: 371 MINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEG 430

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TYN IIDGLCK+G +D+A  L  K+    ++ + VTYT ++   C   D N + 
Sbjct: 431 FSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSL 490

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             F +M+  G  P++ ++  ++   C+  +M E+  L +  +  G+ P   TY +++ G+
Sbjct: 491 VFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGY 550

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G  + A +LF  M + GC
Sbjct: 551 CRYGNTSLAVKLFQRMSNHGC 571



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  ++R     P V ++  M+    K    +    L  R+   GL P+  T++ L
Sbjct: 347 KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTL 406

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK+G     + ++  + +  F+P++ T+ ++I  +CK                   
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  ++   C+Q   +++   F KM      P++ +YT++I  FC      E++R
Sbjct: 467 QADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESER 526

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF E +  G+ P   T+  ++   C+ G    A  L   M  HG  PD+ TY  L+ G C
Sbjct: 527 LFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLC 586

Query: 237 LTGRVNHAKELFVSMESMG 255
              +++ A+ L+ +M   G
Sbjct: 587 KESKLDDARNLYDAMMDKG 605



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 24/236 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K    D    L  +++  GL  D  T++IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             ++L+  FTPD+ ++T+LI   C+                    P   TY ++I G C+
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A +LF +M +    P+ +TY ++I G C  +  ++A+ L+  MMD+G+ P  VT
Sbjct: 553 YGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVT 612

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              +  E CK    D++S+ ++++ +   R    T NTL+   C  G+++ A   F
Sbjct: 613 RLTLAYEYCKK---DDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 14/206 (6%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
            A+N      +++   + + GL     T + +++    MG V     +   + +   +PD
Sbjct: 164 FAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPD 223

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
            V+F  ++  C              C  G V +A++    M ++    +  T T +I  F
Sbjct: 224 CVSFKLMVVAC--------------CNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAF 269

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C     N     F +M++ G+ PNV+ F  +++ LCK G + +A  LL+ M++ G +P+ 
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNV 329

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSM 251
           +T+ TL+DG C  G    A  LF+ +
Sbjct: 330 YTHTTLIDGLCKKGWTEKAFRLFLKL 355



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T N ++D     G V+ A+ +F++M  + V P+ V++  ++   C      EA++    M
Sbjct: 191 TLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAM 250

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +++G   +  T  +I+D  C+ G ++        M++ G+ P+   +  L++G C  G +
Sbjct: 251 VERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSI 310

Query: 242 NHAKELFVSMESMG 255
             A EL   M   G
Sbjct: 311 KQAFELLEEMVRRG 324



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 50/108 (46%)

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           +KN++        ++  F       EA  + +EM +QG+  +  T N ++D     G ++
Sbjct: 147 NKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVE 206

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            A ++   M Q GV PD  ++  ++   C  GRV  A++   +M   G
Sbjct: 207 IAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERG 254



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 54/194 (27%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N +L  F+ ML++  +P  + S+  ++    + K       LF+   S GL P   T++ 
Sbjct: 487 NRSLVFFNKMLKVGFTPD-IHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----------------------- 113
           +I  +C+ G  S    +  R+      PD +T+ +LI                       
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 114 -------------KVCKPD----AI-------------TYNTIIDGLCKQGFVDKAKELF 143
                        + CK D    AI             T NT++  LC +G +D A   F
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665

Query: 144 LKMKDKNVKPNVVT 157
            K+ DK    N VT
Sbjct: 666 HKLLDKEPNVNRVT 679


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 15/235 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I+  M+R     P ++  N  + C+ K    +   ++F+ + S G  PD+ ++SILI+  
Sbjct: 512 IYKEMIR-RGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G+      +   + +  F  D              A  YN ++DGLCK G VDKA E
Sbjct: 571 TKAGQARETSNIFQAMSQQGFALD--------------ARAYNAVVDGLCKSGKVDKAYE 616

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +  +MK K+V P V TY S++ G    +  +EA  LF E   +G++ NV+ ++ ++D   
Sbjct: 617 VLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFG 676

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA  +L+ M++ G+ P+ +T+N+L+D    T  ++ A   F SM+ M C
Sbjct: 677 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC 731



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP S++ +++G LA+ +  +  L L +++   G    +   + L+    + G++     +
Sbjct: 174 PPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALAL 233

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           +  +  SC  PD+V +   I                        +PD ++Y +++  LCK
Sbjct: 234 VDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCK 293

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+ELF +M+ +   P    Y ++I G+  A  +++A +L   + ++G  P+VV+
Sbjct: 294 AGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVS 353

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN I+  L K  K+DEA +L D+M +   +P+  TYN ++D  C+ GRVN A ++   ME
Sbjct: 354 FNSILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEME 412

Query: 253 SMG 255
             G
Sbjct: 413 LAG 415



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 22/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V SFN +L CL K +  D  L+LF  +      P++ T++I+I+  C  GR
Sbjct: 342 LRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAK-PNISTYNIIIDMLCMAGR 400

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V+  + +   +  +   P++++   ++                     + C P+++TY +
Sbjct: 401 VNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCS 460

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGL K+G +D A  LF KM D     N + YTS+IR F       +  +++ EM+ +G
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P++   N  MD + K G++++  ++ + M   G  PD  +Y+ L+ G    G+     
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580

Query: 246 ELFVSMESMG 255
            +F +M   G
Sbjct: 581 NIFQAMSQQG 590



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR+   +++
Sbjct: 628 PTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLI 687

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++   TP+V T              +N+++D L K   +D+A   F  MK+    P
Sbjct: 688 LEEMMKKGLTPNVYT--------------WNSLMDALVKTEEIDEALICFQSMKEMKCSP 733

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY+ +I G C    +N+A   + EM  QG+ PNVVT+  ++  L K G + +A SL 
Sbjct: 734 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLF 793

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +    +G  PD+ ++N L++G     R   A ++F      GC
Sbjct: 794 ERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGC 836



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 22/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  F  ++  LA+    +  L+L   +  + L PD+  +++ I+CF K G V   +    
Sbjct: 211 VPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFH 270

Query: 96  RILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQG 134
            +      PD V++TS++ V CK                    P A  YNT+I G     
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             D A +L  +++++   P+VV++ S++         +EA  LF ++M +  +PN+ T+N
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLF-DVMKKDAKPNISTYN 389

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +I+D LC  G+++EA  + D M   G+ P+  + N ++D  C   ++  A  +F S    
Sbjct: 390 IIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASER 449

Query: 255 GC 256
           GC
Sbjct: 450 GC 451



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  I D M  +    P + S NIM+  L K    +    +F+  +  G  P+  T+  
Sbjct: 402 NEAYKIRDEM-ELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCS 460

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
           LI+   K G++   + +  ++L +    + + +TSLI+                      
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD    NT +D + K G V+K + +F  MK     P+V +Y+ +I G   A    E  
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M  QG   +   +N ++D LCK+GK+D+A  +L+ M    V P   TY +++DG 
Sbjct: 581 NIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640

Query: 236 CLTGRVNHAKELFVSMESMG 255
               R++ A  LF   +S G
Sbjct: 641 AKIDRLDEAYMLFEEAKSKG 660



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + L+ H   P   S+  M+  L K         LF ++ +    P  Y ++ +I  + 
Sbjct: 268 FFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYG 327

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
              R    + +L R+      P VV+F              N+I+  L K+  VD+A  L
Sbjct: 328 SAERFDDAYKLLERLRERGCIPSVVSF--------------NSILTCLGKKRKVDEALTL 373

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  MK K+ KPN+ TY  +I   C A   NEA ++  EM   G+ PN+++ N+++D LCK
Sbjct: 374 FDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCK 432

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++EA  + +   + G  P++ TY +L+DG    G+++ A  LF  M   G
Sbjct: 433 ANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAG 485



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + L+    +  R+   F V+G +    F P    +T LI                L +  
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLI--------------GALAEAR 190

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             ++A EL  +M+D   + +V  +T+++R          A  L  E+    ++P++V +N
Sbjct: 191 QPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYN 250

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           V +D   K G +D A      +  HG+RPD  +Y +++   C  GR+  A+ELF  ME+
Sbjct: 251 VCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEA 309



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            ++  L +   ++ A  +   M+    +P    YT +I     A     A  L  +M D 
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDV 205

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G + +V  F  ++  L + G+M+ A +L+D +    + PD   YN  +D F   G V+ A
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265

Query: 245 KELFVSMESMG 255
            + F  +++ G
Sbjct: 266 WKFFHELKAHG 276


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       AL +FD + +    P  V SFN ++    +    D    L   ++++G+
Sbjct: 153 EGDIRV-----ALSVFDAITKWGLRPS-VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGV 206

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT              T+I
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFT--------------TLI 252

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++
Sbjct: 253 DGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK 312

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+ +++  ++D  CK G ++ A      MIQ  +R D   Y  L+ G C  GR   A+++
Sbjct: 313 PDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKM 372

Query: 248 FVSMESMG 255
              M S+G
Sbjct: 373 LREMLSVG 380



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 95  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEG 154

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 155 DIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 214

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 215 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQ 274

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  +Y TL+DG C  G +  A
Sbjct: 275 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETA 334

Query: 245 KE 246
            E
Sbjct: 335 FE 336



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 201 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 260

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     V  ++L    +PD++T+ +LI                     K  KPD I+Y T
Sbjct: 261 VDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTT 320

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 321 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVG 380

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++P+  T+ +I++E CK G +   S LL  M + G  P   TYN L++G
Sbjct: 381 LRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 23/236 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK------RLNSTGLFPDLYTHSILIN 79
           +L   PS     S+N +L  L +    D  L L +      RL S    P+  +++ L+ 
Sbjct: 46  LLSALPSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASR---PNAISYTTLMR 102

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
             C   R +    +L R ++ C               +PD +TY T+I GLC    VD A
Sbjct: 103 ALCADRRAAQAVGLL-RSMQDCGV-------------RPDVVTYGTLIRGLCDAADVDTA 148

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            EL  +M +  ++PNVV Y+ ++ G+C    W    ++F EM  +G++P+VV +  ++D 
Sbjct: 149 VELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDS 208

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LC++GK+ +A+ ++D+M + G+ P+  TYN L++  C  G V  A +L  +M   G
Sbjct: 209 LCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKG 264



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P   S+  ++  L  ++     + L + +   G+ PD+ T+  LI   C    V    
Sbjct: 90  SRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAV 149

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +L  +  S   P+VV ++ L+   CK                    PD + Y  +ID L
Sbjct: 150 ELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSL 209

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G V KA  +   M ++ ++PNVVTY  +I   C      EA  L   M ++GVQP+V
Sbjct: 210 CRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDV 269

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           VT+N ++  L    +MDEA +LL+ M+Q    VRPD  T+N+++ G C  G +  A ++ 
Sbjct: 270 VTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVR 329

Query: 249 VSMESMGC 256
             M   GC
Sbjct: 330 AMMAENGC 337



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 60/281 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L      DT + L   +  +G+ P++  +S L++ +CK GR      V
Sbjct: 127 PDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKV 186

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              +      PDVV +T+LI  +C+                    P+ +TYN +I+ +CK
Sbjct: 187 FEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCK 246

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPN 189
           +G V +A +L   M +K V+P+VVTY ++I G     + +EA  L  EMM QG   V+P+
Sbjct: 247 EGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMM-QGETRVRPD 305

Query: 190 VVTFNVIMDELCKNG-----------------------------------KMDEASSLLD 214
           ++TFN ++  LCK G                                   K+ +A  L+D
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M   G++PD+FTY+ L++GFC   +V  A+     M   G
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQG 406



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 23/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +  ++  L ++        +   +   GL P++ T+++LIN  CK G V     +
Sbjct: 197 PDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDL 256

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYNTIIDGL 130
              +      PDVVT+ +LI                          +PD +T+N++I GL
Sbjct: 257 RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGL 316

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G++ +A ++   M +   + N+V +  +I G    +   +A  L  EM   G+QP+ 
Sbjct: 317 CKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDS 376

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T++++++  CK  +++ A S L  M   G+ P+   Y  LL   C  G +  A++LF  
Sbjct: 377 FTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNE 436

Query: 251 ME 252
           M+
Sbjct: 437 MD 438



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 15/214 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN+++G L +       + L   + S+GL PD +T+SILIN FCKM +V      L  +
Sbjct: 343 AFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEM 402

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                 P+ V +  L+K               +C QG + +A++LF +M D+N K +   
Sbjct: 403 RHQGMEPEPVHYIPLLK--------------AMCDQGMMGQARDLFNEM-DRNCKLDAAA 447

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G   + +   A+    +M+D+G+ P+ VT+++ ++   K+G +  A  +L  M 
Sbjct: 448 YSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMT 507

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G  PD   +++L+ G+   G      EL   M
Sbjct: 508 ASGFVPDVAVFDSLIQGYGAKGDTEKILELTREM 541



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
            ++++ M+    K+          K +   GL PD  T+SI IN F K G ++    VL 
Sbjct: 445 AAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLK 504

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--P 153
           ++  S F PDV  F SLI+              G   +G  +K  EL  +M  K+V   P
Sbjct: 505 QMTASGFVPDVAVFDSLIQ--------------GYGAKGDTEKILELTREMTAKDVALDP 550

Query: 154 NVVT 157
            +++
Sbjct: 551 KIIS 554


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 130/248 (52%), Gaps = 18/248 (7%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           +    P E+  + + M+    +P  V +FN ++   A++ + +    +++ +  +G  PD
Sbjct: 127 VKEAKPEESYKVLEEMMAAGCNPD-VFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRI-LRSC-FTPDVVTFTSLIKVCKPDAITYNTIID 128
             ++ ILI+   K+G++     +L  + +R+  + P+V+TF+              T+I 
Sbjct: 186 NVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFS--------------TLIH 231

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLC+ G ++KA E+F  M +   KPN  TYT++I G C A    +A+ LF +M    + P
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + V +N ++   CK G MDEA  L   M    G++P   T+NTL+DGFC  G++  A EL
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 248 FVSMESMG 255
              M + G
Sbjct: 352 VAEMGTKG 359



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 50/256 (19%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ ++  LAK       L +F+ + S    P L T+++LIN  C  G       +   +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            R              K  +PD  TYNT+I GLC  G  + A++L  +M+DKN+  NV T
Sbjct: 72  KRE-------------KRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFT 118

Query: 158 YTSVIR-----------------------------------GFCYANDWNEAKRLFIEMM 182
           Y+S+I+                                   GF  +N+  +A+ ++  M+
Sbjct: 119 YSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMV 178

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH--GVRPDAFTYNTLLDGFCLTGR 240
           + G +P+ V++++++  L K GK+DE+  +L  M     G  P+  T++TL+ G C TG 
Sbjct: 179 ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGE 238

Query: 241 VNHAKELFVSMESMGC 256
           +  A E+F SM   GC
Sbjct: 239 LEKALEVFGSMLEAGC 254



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 25/259 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHSILIN 79
           ++ +M+     P  VS ++I++  LAK    D  L +   +   + G  P++ T S LI+
Sbjct: 173 VYQHMVESGYKPDNVS-YHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIH 231

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------P 118
             C+ G +     V G +L +   P+  T+T+LI  +C+                    P
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           DA+ YN++I G CK+G +D+A++L+ +M     ++P +VT+ ++I GFC       A  L
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM  +G+  +  T+ +++  L +  K+DEA  +   M +     D  +  + + G C 
Sbjct: 352 VAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCK 411

Query: 238 TGRVNHAKELFVSMESMGC 256
           TG ++ A  +F +    G 
Sbjct: 412 TGNIDQAYAVFEATRKSGA 430



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 23/255 (9%)

Query: 17  NEALCIFDYM-LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +E+L I   M +R     P V +F+ ++  L +    +  L +F  +   G  P+ YT++
Sbjct: 203 DESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYT 262

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI   C+  +V     +  ++ ++C  PD V + SLI   CK                 
Sbjct: 263 TLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 322

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P  +T+NT+IDG CK G + +A EL  +M  K +  +  TY  +I G   A   +E
Sbjct: 323 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDE 382

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++ +M ++    + V+    +  LCK G +D+A ++ +   + G  P+  T+  L +
Sbjct: 383 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 442

Query: 234 GFCLTGRVNHAKELF 248
                GRV  A++L 
Sbjct: 443 SLIKLGRVEDAQKLM 457



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           C +G  ++ FVV            +  F ++  + C P  +TYN +I+  C  G   KA 
Sbjct: 6   CAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKAL 65

Query: 141 ELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           +LF  MK +K V+P+  TY ++I G C + +   A++L  EM D+ +  NV T++ I+  
Sbjct: 66  DLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKS 125

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L K  K +E+  +L+ M+  G  PD F +N ++ GF  +  +  A+E++  M   G
Sbjct: 126 LVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C      Y+ ++  L K G + +A E+F  MK ++  P++VTY  +I   C A ++ +A 
Sbjct: 6   CAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKAL 65

Query: 176 RLFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            LF  M  ++ V+P+  T+N ++  LC +G  + A  LL  M    +  + FTY++++  
Sbjct: 66  DLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKS 125

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
                +   + ++   M + GC
Sbjct: 126 LVKEAKPEESYKVLEEMMAAGC 147


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM+ +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    +    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWGLRPS-VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           N  CK  ++    V+   +L     P+ VTFT+LI                     +   
Sbjct: 214 NGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ITYNT+I GLCK+G + +A++L  +M  K +KP+ +TYT++I G C   D   A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 238 TGRVNHAKELFVSMESMG 255
            G V    +L   M+  G
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G +P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +++   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D+G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 22/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +S  N+ +  L      D  L   +R+   G+ PD+YT++ LI   C   RV     +
Sbjct: 195 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 254

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           +G +L++   PD +++ +++  +CK                     PD +TYN +I GL 
Sbjct: 255 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 314

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D+A E   + + K  + + V Y++++  FC      EAK +  EM+ +G QP+VV
Sbjct: 315 KHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVV 374

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++ ++D  C+ G++D+A  ++  M ++  +P+  T+  LL+G C  G+ + A EL    
Sbjct: 375 TYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKS 434

Query: 252 ES 253
           E 
Sbjct: 435 EE 436



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP   S+  ++  L K K  + V  L +R+ N  GLFPD  T+++LI+   K G      
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 323

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
             L       F  D V +++++                     K C+PD +TY+T++DG 
Sbjct: 324 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D+A+++   M   + KPN VT+T+++ G C     +EA  L  +  ++   P+ 
Sbjct: 384 CRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSD 443

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T++V+M    + GK+ E+  ++  M+Q G  P     N L+   C   +   AK+    
Sbjct: 444 ITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQ 503

Query: 251 MESMGC 256
            +S GC
Sbjct: 504 CQSKGC 509



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 49/253 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKR---------------------LN--------- 63
           P   ++N+++  LAK+ H D  L   +                      LN         
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 64  -----STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
                S G  PD+ T+S +++ FC++G +        ++++  +  D          CKP
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQA----RKMMKHMYKND----------CKP 406

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + +T+  +++GLCK G   +A EL  K +++   P+ +TY+ V+ GF       E+  + 
Sbjct: 407 NTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVV 466

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           ++M+ +G  P  V  N+++  LCK+ K  EA   ++     G   +   + T++ GF   
Sbjct: 467 VQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQ 526

Query: 239 GRVNHAKELFVSM 251
           G +  A  L   M
Sbjct: 527 GDLESALSLMDDM 539



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 21/227 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    +    D    + K +      P+  TH+ L+N  CK+G+ S  + +
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 94  LGRILRSCFTPDVVTFT----------SLIKVCK-----------PDAITYNTIIDGLCK 132
           L +     +TP  +T++           L + C            P  +  N +I  LCK
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                +AK+   + + K    NVV +T+VI GF    D   A  L  +M      P+VVT
Sbjct: 491 DRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVT 550

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + V++D L K G++ EA+ L++ M+  GV P   TY T++  +C  G
Sbjct: 551 YTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A+ +   M  + V+     +  ++  +  A     A R+   M   G  P++   N+ 
Sbjct: 144 DPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA 203

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ L   G++D+A    + M + GV PD +TYN L+ G C   RV  A E+   M   GC
Sbjct: 204 VNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGC 263



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 94/252 (37%), Gaps = 56/252 (22%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
           L++   GD+       A   F +  R          F+ ML  L+  + +D    + + +
Sbjct: 99  LRAQARGDV-----RRAFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLM 153

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
              G+       + L+  + + G++     VL  + +    PD       I +C      
Sbjct: 154 IRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPD-------ISIC------ 200

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
            N  ++ L   G VDKA E                                    F E M
Sbjct: 201 -NMAVNVLVVAGRVDKALE------------------------------------FAERM 223

Query: 183 DQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            + GV+P+V T+N ++  LC   ++ +A  ++ +M+Q+G  PD  +Y T++   C   RV
Sbjct: 224 RRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 242 NHAKELFVSMES 253
              + L   M +
Sbjct: 284 EEVRGLLQRMRN 295


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 22/242 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +S  N+ +  L      D  L   +R+   G+ PD+YT++ LI   C   RV     +
Sbjct: 195 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 254

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           +G +L++   PD +++ +++  +CK                     PD +TYN +I GL 
Sbjct: 255 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 314

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D+A E   + + K  + + V Y++++  FC      EAK +  EM+ +G QP+VV
Sbjct: 315 KHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVV 374

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T++ ++D  C+ G++D+A  ++  M ++  +P+  T+  LL+G C  G+ + A EL    
Sbjct: 375 TYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKS 434

Query: 252 ES 253
           E 
Sbjct: 435 EE 436



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP   S+  ++  L K K  + V  L +R+ N  GLFPD  T+++LI+   K G      
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 323

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
             L       F  D V +++++                     K C+PD +TY+T++DG 
Sbjct: 324 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D+A+++   M   + KPN VT+T+++ G C     +EA  L  +  ++   P+ 
Sbjct: 384 CRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSD 443

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T++V+M    + GK+ E+  ++  M+Q G  P     N L+   C   +   AK+    
Sbjct: 444 ITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQ 503

Query: 251 MESMGC 256
            +S GC
Sbjct: 504 CQSKGC 509



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 49/253 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKR---------------------LN--------- 63
           P   ++N+++  LAK+ H D  L   +                      LN         
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 64  -----STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
                S G  PD+ T+S +++ FC++G +        ++++  +  D          CKP
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQA----RKMMKHMYKND----------CKP 406

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + +T+  +++GLCK G   +A EL  K +++   P+ +TY+ V+ GF       E+  + 
Sbjct: 407 NTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVV 466

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           ++M+ +G  P  V  N+++  LCK+ K  EA   ++     G   +   + T++ GF   
Sbjct: 467 VQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQ 526

Query: 239 GRVNHAKELFVSM 251
           G +  A  L   M
Sbjct: 527 GDLESALSLMDDM 539



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 21/227 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    +    D    + K +      P+  TH+ L+N  CK+G+ S  + +
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 94  LGRILRSCFTPDVVTFT----------SLIKVCK-----------PDAITYNTIIDGLCK 132
           L +     +TP  +T++           L + C            P  +  N +I  LCK
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                +AK+   + + K    NVV +T+VI GF    D   A  L  +M      P+VVT
Sbjct: 491 DRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVT 550

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + V++D L K G++ EA+ L++ M+  GV P   TY T++  +C  G
Sbjct: 551 YTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A+ +   M  + V+     +  ++  +  A     A R+   M   G  P++   N+ 
Sbjct: 144 DPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA 203

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ L   G++D+A    + M + GV PD +TYN L+ G C   RV  A E+   M   GC
Sbjct: 204 VNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGC 263



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 94/252 (37%), Gaps = 56/252 (22%)

Query: 3   LKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL 62
           L++   GD+       A   F +  R          F+ ML  L+  + +D    + + +
Sbjct: 99  LRAQARGDV-----RRAFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLM 153

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
              G+       + L+  + + G++     VL  + +    PD       I +C      
Sbjct: 154 IRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPD-------ISIC------ 200

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
            N  ++ L   G VDKA E                                    F E M
Sbjct: 201 -NMAVNVLVVAGRVDKALE------------------------------------FAERM 223

Query: 183 DQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
            + GV+P+V T+N ++  LC   ++ +A  ++ +M+Q+G  PD  +Y T++   C   RV
Sbjct: 224 RRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 242 NHAKELFVSMES 253
              + L   M +
Sbjct: 284 EEVRGLLQRMRN 295


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 130/236 (55%), Gaps = 19/236 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           +F  ML    SP  V ++NI++   C A N   D  L+LF ++ + G  P++ T++ LI+
Sbjct: 192 VFKEMLESQVSPN-VFTYNILIRGFCFAGN--IDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            +CK+ ++  GF    ++LRS            +K  +P+ I+YN +I+GLC++G + + 
Sbjct: 249 GYCKLRKIDDGF----KLLRSM----------ALKGLEPNLISYNVVINGLCREGRMKEV 294

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             +  +M  +    + VTY ++I+G+C   ++++A  +  EM+  G+ P+V+T+  ++  
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +CK G M+ A   LD M   G+ P+  TY TL+DGF   G +N A  +   M   G
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 133/256 (51%), Gaps = 22/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +   MLR H   P V ++  ++  + K  + +  +    ++   GL P+  T++ 
Sbjct: 327 HQALVMHAEMLR-HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ F + G ++  + VL  +  + F+P VVT+ +LI                     K 
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++Y+T++ G C+   VD+A  +  +M +K +KP+ +TY+S+I+GFC      EA 
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ EM+  G+ P+  T+  +++  C  G +++A  L + M++ GV PD  TY+ L++G 
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565

Query: 236 CLTGRVNHAKELFVSM 251
               R   AK L + +
Sbjct: 566 NKQSRTREAKRLLLKL 581



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 37/271 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+   D M R+    P   ++  ++   ++  + +    + + +N  G  P + T++ 
Sbjct: 362 NRAMEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C  G++     VL  +     +PDVV++++++                     K 
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KPD ITY+++I G C+Q    +A +L+ +M    + P+  TYT++I  +C   D  +A 
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
           +L  EM+++GV P+VVT++V+++ L K  +  EA  LL  +      P   TY+TL++  
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600

Query: 234 -------------GFCLTGRVNHAKELFVSM 251
                        GFC+ G +  A ++F SM
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESM 631



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 15/220 (6%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR-VSHGFVVLG 95
           S F++++   ++    D  LS+     + G  P + +++ +++   +  R +S    V  
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +L S  +P+V               TYN +I G C  G +D A  LF KM+ K   PNV
Sbjct: 195 EMLESQVSPNV--------------FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV 240

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTY ++I G+C     ++  +L   M  +G++PN++++NV+++ LC+ G+M E S +L  
Sbjct: 241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE 300

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G   D  TYNTL+ G+C  G  + A  +   M   G
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 36/252 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ +L    ++   D  L + + +   G+ PD  T+S LI  FC+  R      +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +LR    PD  T+T+LI                     K   PD +TY+ +I+GL K
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTY---------------TSVIRGFCYANDWNEAKRL 177
           Q    +AK L LK+  +   P+ VTY                S+I+GFC      EA ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M+ +  +P+   +N+++   C+ G + +A +L   M++ G      T   L+     
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687

Query: 238 TGRVNHAKELFV 249
            G+VN    + V
Sbjct: 688 EGKVNELNSVIV 699



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 2/197 (1%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +++ MLR+   PP   ++  ++         +  L L   +   G+ PD+ T+S+L
Sbjct: 503 EACDLYEEMLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVL 561

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-DAITYNTIIDGLCKQGFV 136
           IN   K  R      +L ++      P  VT+ +LI+ C   +  +  ++I G C +G +
Sbjct: 562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ++F  M  KN KP+   Y  +I G C A D  +A  L+ EM+  G   + VT   +
Sbjct: 622 TEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIAL 681

Query: 197 MDELCKNGKMDEASSLL 213
           +  L K GK++E +S++
Sbjct: 682 VKALHKEGKVNELNSVI 698



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNE 173
           +C   +  ++ ++    +   +DKA  +    +     P V++Y +V+     +  + + 
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ +F EM++  V PNV T+N+++   C  G +D A +L D M   G  P+  TYNTL+D
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C   +++   +L  SM   G
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKG 270



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 184 QGVQPNVVTFNVIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            G  P V+++N ++D   ++ + +  A ++   M++  V P+ FTYN L+ GFC  G ++
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222

Query: 243 HAKELFVSMESMGC 256
            A  LF  ME+ GC
Sbjct: 223 VALTLFDKMETKGC 236


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 22/251 (8%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           ++++     P +S  N+ +  L      D  L   +R+   G+ PD+YT++ LI   C  
Sbjct: 153 HLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGA 212

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAIT 122
            RV     ++G +L++   PD +++ +++  +CK                     PD +T
Sbjct: 213 RRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVT 272

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN +I GL K G  D+A E   + + K  + + V Y++++  FC      EAK +  EM+
Sbjct: 273 YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 332

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G QP+VVT++ ++D  C+ G++D+A  ++  M ++  +P+  T+  LL+G C  G+ +
Sbjct: 333 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 392

Query: 243 HAKELFVSMES 253
            A EL    E 
Sbjct: 393 EAWELLNKSEE 403



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 22/246 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP   S+  ++  L K K  + V  L +R+ N  GLFPD  T+++LI+   K G      
Sbjct: 231 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 290

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
             L       F  D V +++++                     K C+PD +TY+T++DG 
Sbjct: 291 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 350

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D+A+++   M   + KPN VT+T+++ G C     +EA  L  +  ++   P+ 
Sbjct: 351 CRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSD 410

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T++V+M    + GK+ E+  ++  M+Q G  P     N L+   C  G+   AK+    
Sbjct: 411 ITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQ 470

Query: 251 MESMGC 256
            +S GC
Sbjct: 471 CQSKGC 476



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 49/253 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKR---------------------LN--------- 63
           P   ++N+++  LAK+ H D  L   +                      LN         
Sbjct: 268 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 327

Query: 64  -----STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
                S G  PD+ T+S +++ FC++G +        ++++  +  D          CKP
Sbjct: 328 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQA----RKMMKHMYKND----------CKP 373

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + +T+  +++GLCK G   +A EL  K +++   P+ +TY+ V+ GF       E+  + 
Sbjct: 374 NTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVV 433

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           ++M+ +G  P  V  N+++  LCK+GK  EA   ++     G   +   + T++ GF   
Sbjct: 434 VQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQ 493

Query: 239 GRVNHAKELFVSM 251
           G +  A  L   M
Sbjct: 494 GDLESALSLMDDM 506



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    +    D    + K +      P+  TH+ L+N  CK+G+ S  + +
Sbjct: 338 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 397

Query: 94  LGRILRSCFTPDVVTFT----------SLIKVCK-----------PDAITYNTIIDGLCK 132
           L +     +TP  +T++           L + C            P  +  N +I  LCK
Sbjct: 398 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 457

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +AK+   + + K    NVV +T+VI GF    D   A  L  +M      P+VVT
Sbjct: 458 DGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVT 517

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + V++D L K G++ EA+ L++ M+  G+ P   TY T++  +C  G
Sbjct: 518 YTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKG 564



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 98  LRSCFTPDV-VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           LR  ++P +      L++V  P  +    ++    + G V +A E F     +    +  
Sbjct: 74  LRESWSPKLEAQLRHLLRVLSPPQV--RAVLRAQAR-GDVRRAFEFFRWADRQWRYRHAP 130

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
            +  ++  +  A     A R+   M   G  P++   N+ ++ L   G++D+A    + M
Sbjct: 131 EFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERM 190

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + GV PD +TYN L+ G C   RV  A E+   M   GC
Sbjct: 191 RRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGC 230



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 55/122 (45%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +  A  +   M+     P++      +     A   ++A      M   GV+P+V 
Sbjct: 141 RAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVY 200

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++  LC   ++ +A  ++ +M+Q+G  PD  +Y T++   C   RV   + L   M
Sbjct: 201 TYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRM 260

Query: 252 ES 253
            +
Sbjct: 261 RN 262


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 26/235 (11%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNSTGLF----PDLYTHSILINC 80
           +P P  + N +L  LA+              + LFKR++         P ++T++ILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           + ++ R   G  ++GR+L++   PD  +++               +I G  K G VDKA 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSYS---------------LIYGFVKDGEVDKAH 230

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            LFL+M ++ V P ++   S+I+  C   + ++A+ +  +M+D G+ P++ T+++I+D L
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK+  MD+A  +L+ M++ G RP++ TYN+L+ G+ ++G  N +  +F  M S G
Sbjct: 291 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 345



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 32/267 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVL-----SLFKRLNSTGLFPD 70
           NEA CIFD M+   P P  +S S N    C      Y TV+     ++F  + + G+ P+
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTNASWVCY----WYVTVVWVMWHNIFNLMLTKGIAPN 422

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------ 117
            +  +ILIN + + G +    ++   +      PD VTF ++I  +C+            
Sbjct: 423 KHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFN 482

Query: 118 --------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY-TSVIRGFCYA 168
                   P    Y  +I G C  G + KAKEL  +M +K++ P  V Y +S+I   C  
Sbjct: 483 HMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKE 542

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               E K +   M+  G +PNVVTFN +M+  C  G M+EA +LLD M   G+ P+ + Y
Sbjct: 543 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 602

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
            TL+DG+C  GR++ A  +F  M   G
Sbjct: 603 GTLVDGYCKNGRIDDALTVFRDMLHKG 629



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 25/246 (10%)

Query: 15  TPNEALCIFDYMLRM---HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
            P  A+ +F  M R      SPP + ++NI++ C  +    D  L++  RL   GL PD 
Sbjct: 152 APALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDD 211

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
           +++S LI  F K G V     +   ++     P ++   S+IK +CK             
Sbjct: 212 FSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQK 270

Query: 118 -------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
                  PD  TY+ IIDGLCK   +DKA+ +  +M +   +PN +TY S+I G+  +  
Sbjct: 271 MVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGM 330

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           WNE+ R+F +M   GV P V   N  +  L K+G+ +EA  + D M+  G +PD  +Y+T
Sbjct: 331 WNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 231 LLDGFC 236
                C
Sbjct: 391 NASWVC 396



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F++M+ +   P       ++ GC    +       + + +N     P +   S 
Sbjct: 475 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 534

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +IN  CK GRV+ G  ++  ++++   P+VVTF SL++  C                   
Sbjct: 535 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 594

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+   Y T++DG CK G +D A  +F  M  K VKP  V Y+ ++ G   A     AK
Sbjct: 595 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAK 654

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F EM++ G   ++ T+ V++  LC+N   DEA+ LL+ +    V+ D  T+N ++   
Sbjct: 655 KMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAM 714

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR   AKELF ++ + G
Sbjct: 715 FKVGRRQEAKELFDAISTYG 734



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 137/299 (45%), Gaps = 61/299 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + + M+     P  ++ +N ++   + +  ++  + +FK+++S G+ P +   + 
Sbjct: 297 DKAERVLEQMVEAGTRPNSIT-YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNS 355

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS------------------------L 112
            I+   K GR +    +   ++     PD++++++                        L
Sbjct: 356 FIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLML 415

Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV----------- 161
            K   P+   +N +I+   + G +DKA  +F  M++K + P+ VT+ +V           
Sbjct: 416 TKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLD 475

Query: 162 ------------------------IRGFCYANDWNEAKRLFIEMMDQGV-QPNVVTFNVI 196
                                   I+G C   +  +AK L  EMM++ +  P V  F+ I
Sbjct: 476 DALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 535

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ LCK G++ E   ++D+M+Q G RP+  T+N+L++G+CL G +  A  L  +M S+G
Sbjct: 536 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 594



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +F  ML     P  V  ++I+L  L + +       +F  +  +G    ++T+ +
Sbjct: 616 DDALTVFRDMLHKGVKPTSVL-YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGV 674

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C+        ++L ++    F  +V          K D IT+N +I  + K G  
Sbjct: 675 VLGGLCRNNCTDEANMLLEKL----FAMNV----------KFDIITFNIVISAMFKVGRR 720

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKELF  +    + PN+ TY+ +I        + EA  LFI +   G   +    N I
Sbjct: 721 QEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 780

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  L    ++ +AS+ L ++ ++ +  +A T + L   F   G+
Sbjct: 781 VRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 824


>gi|357138636|ref|XP_003570896.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Brachypodium distachyon]
          Length = 500

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 22/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H   P V S N  +    + K  +  ++ F+++    + PD YT ++++  FC +GR
Sbjct: 159 MRAHGLLPRVESCNTFISAALRLKRPEIAVAFFRQMRRCCISPDTYTANMMLAAFCALGR 218

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYN 124
           V+    +L  +        VV+F +LI                        C PDA+TYN
Sbjct: 219 VADAAKMLDEMPEWGVYRTVVSFNTLIAAYCRGHGGLENALELKRRMEKEGCAPDAVTYN 278

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           TII GLCK+  + +A +L ++M+   V PN VTY  +I G     D   A R+  EM+  
Sbjct: 279 TIIHGLCKERQMRQANQLLIEMRVMRVAPNTVTYNMLIHGHVMLGDNKTASRVREEMVKN 338

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G+Q ++VT+N ++  LC+ GK+ E+  LL  + + G+ P+A T+  L+ G   T     A
Sbjct: 339 GLQLDIVTYNTLILGLCREGKVKESEHLLQELDKRGLEPNASTFAALITGHWKTQNSERA 398

Query: 245 KELFVSMESMG 255
            +L   M+  G
Sbjct: 399 LQLLNVMKKSG 409



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 26/236 (11%)

Query: 36  VSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK--MGRVSHGFV 92
           V SFN ++    + +   +  L L +R+   G  PD  T++ +I+  CK    R ++  +
Sbjct: 238 VVSFNTLIAAYCRGHGGLENALELKRRMEKEGCAPDAVTYNTIIHGLCKERQMRQANQLL 297

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +  R++R    P+ VT+  LI                        + D +TYNT+I GLC
Sbjct: 298 IEMRVMR--VAPNTVTYNMLIHGHVMLGDNKTASRVREEMVKNGLQLDIVTYNTLILGLC 355

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G V +++ L  ++  + ++PN  T+ ++I G     +   A +L   M   G  PN  
Sbjct: 356 REGKVKESEHLLQELDKRGLEPNASTFAALITGHWKTQNSERALQLLNVMKKSGFHPNYD 415

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           TF +++   CKN   + A  ++  ++   + PD    +   DG     +++ A++L
Sbjct: 416 TFKIVVSTFCKNKDFEGAVDVMKDILGRCMAPDKALLHEFFDGLSKAKKLHLAEDL 471



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 39/88 (44%)

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           AN  ++A   F  M   G+ P V + N  +    +  + + A +    M +  + PD +T
Sbjct: 146 ANKLSQATLAFRAMRAHGLLPRVESCNTFISAALRLKRPEIAVAFFRQMRRCCISPDTYT 205

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
            N +L  FC  GRV  A ++   M   G
Sbjct: 206 ANMMLAAFCALGRVADAAKMLDEMPEWG 233


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 57/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L CL K    D  L +F+ +    + P+L T++I+I   CK G V   F V
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   P+V T   +I                     KVC PD  T+ ++IDGL K
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG VD A  ++ +M D +  PNVV YTS+IR F   +   +  +++ EMM  G  P+++ 
Sbjct: 353 QGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLML 412

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT------------------------- 227
            N  MD + K G+ ++  +L + +   G  PD  +                         
Sbjct: 413 LNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMK 472

Query: 228 ----------YNTLLDGFCLTGRVNHAKELFVSMESMG 255
                     YNT++DGFC +G+VN A +L   M++MG
Sbjct: 473 DQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMG 510



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M  M   P  V+  +++ G LAK    D    LF+   S G+  +   +S 
Sbjct: 497 NKAYQLLEEMKTMGHHPTVVTYGSVVDG-LAKIDRLDEAYMLFEEAKSNGIELNQVIYSS 555

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GRV   ++V+  +++   TP+V T              +N ++DGL K   +
Sbjct: 556 LIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYT--------------WNCLLDGLVKAEEI 601

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F  MKD    PN +TY  +I G C    +N+A   + EM  QG++PN +T+  +
Sbjct: 602 NEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAM 661

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K+G + +ASSL +     G  PD+ +YN +++G  +  R   A +LF      GC
Sbjct: 662 ISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGC 721



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M+R   SP  +   N  + C+ K    +   +LF+ + + G  PD  ++SILI+  
Sbjct: 397 MYKEMMRSGCSPD-LMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G     + +               +    + C  D   YNT+IDG CK G V+KA +
Sbjct: 456 VKAGFARETYELY--------------YAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 501

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +MK     P VVTY SV+ G    +  +EA  LF E    G++ N V ++ ++D   
Sbjct: 502 LLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFG 561

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K G++DEA  +++ M+Q G+ P+ +T+N LLDG      +N A   F SM+ + C
Sbjct: 562 KVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKC 616



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + NIM+  L K +  D   S+F+ ++     PD  T   LI+   K GRV   + +
Sbjct: 303 PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRI 362

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
             R+L +   P+VV +TSLI+                      C PD +  NT +D + K
Sbjct: 363 YERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFK 422

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  +K + LF ++K +   P+  +Y+ +I     A    E   L+  M DQG   +   
Sbjct: 423 AGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRA 482

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK+GK+++A  LL+ M   G  P   TY +++DG     R++ A  LF   +
Sbjct: 483 YNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 542

Query: 253 SMG 255
           S G
Sbjct: 543 SNG 545



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 16/228 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+R     P  S++  ++G L++    D +L+LF ++   G   +++  + LI  F + G
Sbjct: 51  MMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREG 110

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           RV     +L  +  + F  D+V               YN  ID   K G VD A + F +
Sbjct: 111 RVDAALSLLDEMKSNTFDADIVL--------------YNVCIDCFGKVGKVDMAWKFFHE 156

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNG 204
           MK   + P+ VTYTS++   C AN  +EA  +F E M+Q  Q P    +N ++      G
Sbjct: 157 MKANGLVPDDVTYTSMMGVLCKANRLDEAVEIF-EQMEQNRQVPCAYAYNTMIMGYGSAG 215

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           K DEA SLL+     G  P    YN +L      G+ + A  +F  M+
Sbjct: 216 KFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK 263



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 21/232 (9%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           + + +++D +  +   ++  G  P  YT   L+    K  ++   F +L  +    F P 
Sbjct: 1   MVRTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPA 60

Query: 106 VVTFTSLI----KVCKPDAIT-----------------YNTIIDGLCKQGFVDKAKELFL 144
              +T+LI    +V + D +                    T+I    ++G VD A  L  
Sbjct: 61  FSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLD 120

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +MK      ++V Y   I  F      + A + F EM   G+ P+ VT+  +M  LCK  
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++DEA  + + M Q+   P A+ YNT++ G+   G+ + A  L     + GC
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGC 232



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 15/194 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + + M++   +P  V ++N +L  L K +  +  L  F+ +      P+  T+ I
Sbjct: 567 DEAYLVMEEMMQKGLTPN-VYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCI 625

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  CK+ + +  FV    + +                 KP+ ITY  +I GL K G V
Sbjct: 626 LINGLCKVRKFNKAFVFWQEMQKQGL--------------KPNTITYTAMISGLAKSGNV 671

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF + +     P+  +Y ++I G   AN   +A +LF E   +G   +  T   +
Sbjct: 672 AQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVAL 731

Query: 197 MDELCKNGKMDEAS 210
           +D L K   +++A+
Sbjct: 732 LDALHKAECLEQAA 745


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 20/246 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI     + AL +F+  L      P +  +N ++  L++       L L   ++  G+
Sbjct: 341 DGDI-----DHALALFEEALG-KGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGM 394

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD++T++++IN  CKMG VS    +L   +   + PD+ TF              NT+I
Sbjct: 395 SPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTF--------------NTLI 440

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK+  +D A  +   M    V P+V+TY S++ G C A    +    F  +M++G  
Sbjct: 441 DGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCL 500

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN++T+N++++ LCK  K+ EA  LL+ +   G+ PD  ++ T++ GFC  G ++ A +L
Sbjct: 501 PNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQL 560

Query: 248 FVSMES 253
           F  ME 
Sbjct: 561 FRRMEQ 566



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 131/302 (43%), Gaps = 64/302 (21%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ MLR+   P  +++FN ++  L K  H      L  ++   G+ P+L+T +I 
Sbjct: 199 EAYELFNKMLRLGIFPH-IATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 78  INCFCKMG--------------------------------RVSHGFVVLG------RILR 99
           I   C+ G                                 + +G+  +G      RIL+
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317

Query: 100 SC----FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
                 F PD  T+ SLI                     K  KP  + YNT+I GL +QG
Sbjct: 318 DAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG 377

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V KA +L   M  + + P++ TY  VI G C     ++A  L    + +G  P++ TFN
Sbjct: 378 LVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFN 437

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D  CK  KMD A  +LD M  HGV PD  TYN++L+G C   +     E F  +   
Sbjct: 438 TLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEK 497

Query: 255 GC 256
           GC
Sbjct: 498 GC 499



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M   +   P + S+N ++  L +  +++    ++ R+   G+ PD+ T +I
Sbjct: 93  QEAVDVFERM-DFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTI 151

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            I  FC+  R      +L  +      P         + C+ +A+ Y T+I G  ++ + 
Sbjct: 152 RIKSFCRTKRPLAALRLLNNM------PS--------QGCELNAVVYCTVISGFYEENYQ 197

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ELF KM    + P++ T+  ++   C      E ++L  +++  GV PN+ TFN+ 
Sbjct: 198 VEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 197 MDELCKNG-------KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  LC+ G       K+ EA + L  M+  G+ PD FTYNT++ G+   G++  A  + 
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL 316



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ I D M   H   P V ++N +L  L K    + V+  FK +   G  P++ T++I
Sbjct: 450 DNAIGILDSMWS-HGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNI 508

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI   CK  +V+    +L  I      PD V+F               T+I G C  G +
Sbjct: 509 LIESLCKARKVTEALDLLEEIRNRGLIPDPVSF--------------GTVISGFCNNGDL 554

Query: 137 DKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           D+A +LF +M+ +  +   V TY  +I  F    D + A++LF EM D+G  P+  T+ V
Sbjct: 555 DEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRV 614

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           ++D  CK G ++     L   I+ G  P   T+  +++  C+  RV+ A
Sbjct: 615 MIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEA 663



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 14/199 (7%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            + +F+R++     P +++++ ++N   + G  +    V  R+      PDV TFT  IK
Sbjct: 95  AVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIK 154

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                           C+      A  L   M  +  + N V Y +VI GF   N   EA
Sbjct: 155 --------------SFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEA 200

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF +M+  G+ P++ TFN +M  LCK G + E   LL+ ++++GV P+ FT+N  + G
Sbjct: 201 YELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQG 260

Query: 235 FCLTGRVNHAKELFVSMES 253
            C  G +  A    V  E+
Sbjct: 261 LCRKGVLEGANSKVVEAEN 279



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 26/183 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++  L K +     L L + + + GL PD  +   +I+ FC  G +   + +
Sbjct: 501 PNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQL 560

Query: 94  LGRI---LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
             R+    R C T  V T+  +I                     K C PD+ TY  +IDG
Sbjct: 561 FRRMEQQYRICHT--VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDG 618

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            CK G V+   +  LK  +    P++ T+  VI   C  +  +EA  +   M+  GV P 
Sbjct: 619 FCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPE 678

Query: 190 VVT 192
            V 
Sbjct: 679 AVV 681



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 67/134 (50%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            Y + +    ++G V +A ++F +M   N +P++ +Y +++        +N+A ++++ M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G+ P+V TF + +   C+  +   A  LL+ M   G   +A  Y T++ GF      
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQ 197

Query: 242 NHAKELFVSMESMG 255
             A ELF  M  +G
Sbjct: 198 VEAYELFNKMLRLG 211



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLF 178
           +TY  +I+ L   G  D  + + ++M+  NV  +++   Y S +R +       EA  +F
Sbjct: 41  LTYKRMIEKLGFHGEFDAMERVLMEMR-LNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVF 99

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M     +P++ ++N IM+ L + G  ++A  +   M   G+ PD  T+   +  FC T
Sbjct: 100 ERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRT 159

Query: 239 GRVNHAKELFVSMESMGC 256
            R   A  L  +M S GC
Sbjct: 160 KRPLAALRLLNNMPSQGC 177


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 19/239 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR-LNSTGLFPDLYTHSI 76
           E++ +F  M  +  SP  V +FN ++  L K    +    ++   L + G+ PD  T+++
Sbjct: 166 ESMKLFQTMKSIAVSPS-VVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNV 224

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FCK   V  GF    R  R     ++ +F      C  D +TYNT++DGLC+ G V
Sbjct: 225 LIRGFCKNSMVDEGF----RFFR-----EMESFN-----CDADVVTYNTLVDGLCRAGKV 270

Query: 137 DKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             A+ L   M  K   + PNVVTYT++IRG+C   +  EA  +  EM  +G++PN++T+N
Sbjct: 271 RIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYN 330

Query: 195 VIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++  LC+  K+D+   +L+ M    G  PD FT+NT++   C  G ++ A ++F SM+
Sbjct: 331 TLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMK 389



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 30/268 (11%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT----VLSLFKRLNSTGLFPDL 71
           P++AL  F +  +   S  P S F IML  L + ++ +     + S+ K    T    D 
Sbjct: 91  PSKALRFFKWTQQKGFSHTPESYF-IMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDR 149

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------- 115
           + +S LI  + + G       +   +     +P VVTF SL+ +                
Sbjct: 150 FFNS-LIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDE 208

Query: 116 ------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                   PD  TYN +I G CK   VD+    F +M+  N   +VVTY +++ G C A 
Sbjct: 209 MLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAG 268

Query: 170 DWNEAKRLFIEMMD--QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               A+ L   M    +G+ PNVVT+  ++   C   +++EA  +L+ M   G++P+  T
Sbjct: 269 KVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMIT 328

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL+ G C   +++  K++   M+S G
Sbjct: 329 YNTLVKGLCEAHKLDKMKDVLERMKSDG 356



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           + S+IR +  A  + E+ +LF  M    V P+VVTFN +M  L K G+ + A  + D M+
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210

Query: 218 -QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +GV PD  TYN L+ GFC    V+     F  MES  C
Sbjct: 211 GTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNC 250



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 38/265 (14%)

Query: 1   ERLKSSGEGDITTITPN-------------EALCIFDYMLRMHPSPPPVSSFNIMLGCLA 47
           ER+KS G     T T N             EAL +F+ M +    P   +S++ ++  L 
Sbjct: 350 ERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRI-PADSASYSTLIRSLC 408

Query: 48  KNKHYDTVLSLFKRL-------NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           +   YD    LF  L       +  G  P   +++ +    C+ G+         R++R 
Sbjct: 409 QKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKA----ERVIRQ 464

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                      L+K    D  +Y T+I G CK+G  +   EL + M  ++  P++  Y  
Sbjct: 465 -----------LMKRGTQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDY 513

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I GF   +    AK    +M+    QP   T++ ++ +L + G   E+S ++ +M++  
Sbjct: 514 LIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKN 573

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAK 245
           VR +       L    L GR  H +
Sbjct: 574 VRQNINLSTESLQ--LLFGREQHER 596



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 31/251 (12%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSI 76
           EAL + + M      P  ++ +N ++  L +    D +  + +R+ S G F PD +T + 
Sbjct: 309 EALVVLEEMTSRGLKPNMIT-YNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNT 367

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           +I+  C  G +     V   + +     D  ++++LI+ +C                   
Sbjct: 368 IIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKE 427

Query: 117 --------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                   KP A +YN I + LC+ G   KA+ +  ++  +  + +  +YT+VI G C  
Sbjct: 428 ILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQ-DPQSYTTVIMGHCKE 486

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
             +     L + M+ +   P++  ++ ++D   +  K   A   L+ M++   +P   T+
Sbjct: 487 GAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTW 546

Query: 229 NTLLDGFCLTG 239
           +++L      G
Sbjct: 547 HSVLAKLLEKG 557


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A  LF +M DK + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANVLFDEMLDKGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D MI  G++PD FTY TL+DG C  G +  A E
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFE 332



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + ++G+ PD+YT+S+LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+  TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G +P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +++   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D+G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 123/276 (44%), Gaps = 54/276 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+N ++  LA     D     F  +   G  PD+   + LI+ FCK G+   G  +
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP-----------------DAITYNTIIDGLCKQGF 135
           L + L+  F PDV  +TS+I   CK                  D I+Y T+I GL     
Sbjct: 65  LNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKR 123

Query: 136 VDKAKELFLKMKDKNVKPNVV-----------------------------------TYTS 160
           +D+A ELF ++K     PNVV                                   TYT 
Sbjct: 124 IDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTV 183

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           VI G C A    +A ++F +M+ +G  P+ +T+  ++D   K  KMDEA  LLD+M+  G
Sbjct: 184 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 243

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             P A TY +++ GFC    +N AKE+   M   GC
Sbjct: 244 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGC 279



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 21/242 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+  ++  LA +K  D    LF+ L + G  P++  ++ +I+   K GR+  G     
Sbjct: 108 VISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 167

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            +  S   P   T+T +I                     K C PD ITY T+IDG  K  
Sbjct: 168 EMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 227

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A++L   M  K  +P  VTY S++ GFC  +  NEAK +  +M ++G +P +  F 
Sbjct: 228 KMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFT 287

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G+ +EA  +L  M   G  PD   Y +L+D    TGRV  A+ +F SM   
Sbjct: 288 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK 347

Query: 255 GC 256
           GC
Sbjct: 348 GC 349



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D ML   P P  V+  +I+ G   K    +    +  ++   G  P L+  + 
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 288

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L++ +   GR    + VL  +      PDV+ +TSLI                     K 
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PDA+TY TII    K G V+ A E+   M    V P+   Y S++ G+      ++A 
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDG 234
            ++  M+  G++PN VTFNV+M  L K+GK D A SL   M++   V P   +Y  L+DG
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               GRV+ A   F  M   G
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRG 489



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+  L+     P V ++  ++  L K    +  L  F+ ++ +   P   T+++
Sbjct: 125 DEACELFEE-LKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTV 183

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+  CK   +     V  ++++    PD +T+T+LI                     K 
Sbjct: 184 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 243

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P A+TY +I+ G CK   +++AKE+  +M+++  +P +  +TS++  +       EA 
Sbjct: 244 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAY 303

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++  EM  +G  P+V+ +  ++D L   G++ EA  + D MI+ G  PDA TY T++  F
Sbjct: 304 QVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNF 363

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G V  A E+   M   G
Sbjct: 364 SKIGNVEAAGEILELMAKSG 383



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 125/240 (52%), Gaps = 16/240 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M+    +P  ++ +  ++   +K  + +    + + +  +G+ PD + ++ L
Sbjct: 336 EARHVFDSMIEKGCAPDALT-YGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 394

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ + K+ RV   F V  R++ S                KP+A+T+N ++ GL K G  D
Sbjct: 395 MDGYVKLERVDQAFGVYDRMVASGI--------------KPNAVTFNVLMHGLFKDGKTD 440

Query: 138 KAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +A  LF +M +K  V P +V+YT +I G   A   +EA   F EM+D+G+ P   T+  +
Sbjct: 441 RAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSL 500

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G++ EA  L++ M++ GV PD   Y+ L+ G   +  V+ A ++F  M   GC
Sbjct: 501 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGC 560



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P  ++YNT+I GL     +D+A + F  M D   +P+V+ +T++I GFC A       
Sbjct: 3   CEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGH 62

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP----DAFTYNTL 231
           +L  + + +  +P+V  +  ++   CK G +D             V P    D  +Y T+
Sbjct: 63  KLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYF-------RAVTPKASLDVISYTTV 114

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           + G   + R++ A ELF  +++ GC
Sbjct: 115 IKGLADSKRIDEACELFEELKTAGC 139



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +F  ML     PP + S+ I++  L K          F+ +   G+ P+ +T++ 
Sbjct: 440 DRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTS 499

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI    K GR+     ++  +++    PDV  +++LI               GL     V
Sbjct: 500 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT--------------GLIDSSMV 545

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGV 186
           D A ++F +M  +   PN VTY  + RGF  A    D    K+ F     QGV
Sbjct: 546 DTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHF----SQGV 594



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           G +P +V++N ++  L    KMDEA    + MI +G  PD   + TL+ GFC  G+
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ 57


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    +    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWGLRPTAVS-FNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++ +   +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDYANELFNEMLDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ VT+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P   + + L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A ELF +M D  + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDYANELFNEMLDNGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 299 IDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFE 332



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD +TY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S L+  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  V +F  ++  L +       L+L  R+   G  PD  T+  ++N  CK+G       
Sbjct: 7   PANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALN 66

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L ++  S                K + + Y+ I+D LCK G   KA+ +F +M +K + 
Sbjct: 67  MLRKMDESQI--------------KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIF 112

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNV+TY  +I G+C    W++A++L  +M+++ + P+VVTF+ +++   K GK+  A  L
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              M++  + P   TY++++DGFC   R+  AK +F  M S GC
Sbjct: 173 YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGC 216



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 124/240 (51%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +F  M+    SP  V+  N +L  L +N   +  L +FK    + +  D  T +I
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTC-NTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGF 135
           +IN  CK  +V   + +               F SL +   + D +TYN +I    K+G 
Sbjct: 307 IINGMCKGNKVDEAWDL---------------FNSLPVNGVETDVVTYNILIGVFVKEGN 351

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             +A++++L+M  K + P+ VTY S++ GFC  N   EA+++   M+ +G  P+VVTF+ 
Sbjct: 352 FLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFST 411

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   CK G++D+   L   M Q G+  D  TYN L+ GFC  G +N A+++F  M S G
Sbjct: 412 LIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSG 471



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 32/255 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F+ ++    K         L++ +    +FP   T+S +I+ FCK  R+     +
Sbjct: 148 PDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHM 207

Query: 94  LGRILRSCFTPDVVTFTSLIKVC--------------------------------KPDAI 121
              ++    +PD++T  +LI  C                                 PD +
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIV 267

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T NT++ GLC+ G ++KA E+F   +   +  +  T   +I G C  N  +EA  LF  +
Sbjct: 268 TCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSL 327

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
              GV+ +VVT+N+++    K G    A  +   M+  G+ P   TYN+++DGFC   R+
Sbjct: 328 PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRL 387

Query: 242 NHAKELFVSMESMGC 256
             A+++  SM S GC
Sbjct: 388 EEARQMVDSMVSEGC 402



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 21/199 (10%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           ++ NI++  + K    D    LF  L   G+  D+ T++ILI  F K G       +   
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 97  ILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGF 135
           +L     P  VT+ S++                     + C PD +T++T+I G CK G 
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD   ELF +M  + +  + +TY ++I GFC   D N A+ +F EM+  GV P+ +TF  
Sbjct: 422 VDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRS 481

Query: 196 IMDELCKNGKMDEASSLLD 214
           ++  LC   ++ +  ++L+
Sbjct: 482 MLAGLCTKAELQKGLTMLE 500



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 35/141 (24%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP----------------- 188
           M +     NVVT+T+++ G C      +A  L   M+++G QP                 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 189 ------------------NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
                             NVV ++ I+D LCK+G   +A ++   M + G+ P+  TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 231 LLDGFCLTGRVNHAKELFVSM 251
           ++DG+C  G+ + A++L   M
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDM 141


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 25/272 (9%)

Query: 10  DITTITPNEALCIFDYMLR----MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           D+T  T    LC  D +      +   PP  +S+N ++  L +      V S+   +   
Sbjct: 171 DVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGR 230

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           GL P++ T++ +++ FCK G +     +L R++ +  TP+VVTFT+L++           
Sbjct: 231 GLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDA 290

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        P  ++YN +I GLC  G +  A  +   M+     PNV TY+++I G
Sbjct: 291 LDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 350

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           F  A D   A  ++ +M   G +PNVV +  ++D  CK    ++A SL+D M+     P+
Sbjct: 351 FSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 410

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             T+NTL+   C   RV  A  +F  M   GC
Sbjct: 411 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 442



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++ +M+    +P  VS +NI++  L          S+   +   G FP++ T+S 
Sbjct: 288 HDALDMWRWMVAEGWAPSTVS-YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 346

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+ F K G +     +   + RS   P+VV +T+++ V                     
Sbjct: 347 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLEN 406

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+NT+I  LC    V +A  +F +M+     PN  TY  +I G     +  +A 
Sbjct: 407 CPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDAL 466

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM   G++ ++VT+N ++  LC+     EA   +  MI  G++P+AFT++ ++  +
Sbjct: 467 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 526

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A  +  +M  + C
Sbjct: 527 CKEGEVRMAAWMLGAMNVVNC 547



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 26/246 (10%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            PP   +       L +N        +   +   G  PD  T++ +++  CK+ R+    
Sbjct: 132 QPPHRRAAAGRTWALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEAT 191

Query: 92  VVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGL 130
            VL     +   P   ++ +++  +C+                    P+ ITY TI+D  
Sbjct: 192 EVL-----AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAF 246

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G +  A  +  +M      PNVVT+T+++RG       ++A  ++  M+ +G  P+ 
Sbjct: 247 CKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPST 306

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V++N+++  LC  G +  ASS+L+ M QHG  P+  TY+TL+DGF   G +  A  ++  
Sbjct: 307 VSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWND 366

Query: 251 MESMGC 256
           M   GC
Sbjct: 367 MSRSGC 372



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P V +++ ++   +K       +S++  ++ +G  P++  ++ +++ FCK   
Sbjct: 332 MEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLM 391

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
            +    ++ ++L     P+ VTF +LI+                      C P+  TYN 
Sbjct: 392 FNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 451

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GL ++G    A  +  +M+   ++ ++VTY +V+ G C      EA     +M+ QG
Sbjct: 452 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 511

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +QPN  TF+ I+   CK G++  A+ +L  M       +   Y  L+   C
Sbjct: 512 IQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELC 562



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + D ML +   PP   +FN ++  L   +     L +F  +   G  P+  T++ 
Sbjct: 393 NQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 451

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   + G       ++  +        +VT              YNT++ GLC+    
Sbjct: 452 LIHGLFREGNCGDALHMVTEMQSHGIELSLVT--------------YNTVVSGLCQTRMS 497

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A     KM  + ++PN  T++++I  +C   +   A  +   M       N++ + ++
Sbjct: 498 REAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTIL 557

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           M ELC   K+ +A + L  M+  G+ P+  T+N L+ G
Sbjct: 558 MAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRG 595


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A  LF +M DK + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANVLFDEMLDKGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D MI  G++PD FTY TL+DG C  G +  A E
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFE 332



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + ++G+ PD+YT+S+LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+  TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G +P   T
Sbjct: 384 YTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +++   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D+G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S N  L  L      D  L+ ++ +    + P+ YT +++++  CK G++     V
Sbjct: 162 PTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEV 221

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +     TP+VV++ +LI                        +P+ +T+N++I G CK
Sbjct: 222 LREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCK 281

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A   F +MK  NV PN VTY ++I G+    + N A +++ EMM  GV+ +++T
Sbjct: 282 EGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILT 341

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LCK GK  +A+ L+  + +  + P+A TY+ L+ G C     + A +L+ SM 
Sbjct: 342 YNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMV 401

Query: 253 SMGC 256
             GC
Sbjct: 402 RSGC 405



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++              L   +   GL P++ T + LI+ FCK G++      
Sbjct: 232 PNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRF 291

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIIDGLCK 132
              +     TP+ VT+ +LI             KV         K D +TYN +I GLCK
Sbjct: 292 FSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCK 351

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G   KA  L  ++  +N+ PN  TY+++I G C   + + A +L+  M+  G  PN  T
Sbjct: 352 EGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQT 411

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F ++     KN   + A ++L  M    +  D+ T   + DG C  G+ N A +L   ME
Sbjct: 412 FKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEME 471

Query: 253 S 253
           +
Sbjct: 472 A 472



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 53  DTVLSL-----FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL--RSCFTP- 104
           D VLSL      K LN   L   L THSI+++   K  +      +L  +L  RS   P 
Sbjct: 55  DHVLSLEFFNSLKTLNPISL--TLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPG 112

Query: 105 ---DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
              D + F+   ++C      ++++            A ++F +MKD    P V +  + 
Sbjct: 113 KLFDTLLFS--YRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAY 170

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +      +  + A   + EM    + PN  TFN+++  LCK+GK+++A  +L  M   G+
Sbjct: 171 LSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGI 230

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKEL 247
            P+  +YNTL+ G C  G ++ A +L
Sbjct: 231 TPNVVSYNTLIAGHCNKGLLSIATKL 256



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 21/212 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    K          F  +    + P+  T++ LIN + ++G  +    V
Sbjct: 267 PNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKV 326

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++R+    D++T+ +LI  +CK                    P+A TY+ +I G C 
Sbjct: 327 YEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCA 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +   D+A +L+  M      PN  T+  +   F    D+  A  + ++M  + +  +  T
Sbjct: 387 RKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
              I D LC+ GK + A  L   M    + P+
Sbjct: 447 LLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%)

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           + S+ + + + N +  A  +F  M D G  P V + N  +  L    ++D A +    M 
Sbjct: 132 FDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMR 191

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  + P+++T+N +L   C +G++  A E+   MES+G
Sbjct: 192 RCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVG 229


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    D   ++   +   G  PDL T+++ +N FC    +     +L  + 
Sbjct: 223 YNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLME 282

Query: 99  RSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCKQGFVD 137
           RS   PDV ++  L+K +CK                     D ++YNTII   CK G   
Sbjct: 283 RSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTT 342

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A +LF +M  K + P+VVT+T  I+ F     +N AK+L  +M + G+ P+ + +  I+
Sbjct: 343 SAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTII 402

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK+GK++ A S+   M++ G+ PD  ++N L++GFC   RV+ A  L+  M++ G
Sbjct: 403 DHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRG 460



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 15/204 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI L  L      D  L +F+++   G  PD+ T++I+I+  CK+ +       
Sbjct: 112 PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQF 171

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
              ++   F+PD        K C         I+ GLC    VD A EL +  MK   VK
Sbjct: 172 WRDMIHKGFSPDN-------KAC-------GAIVVGLCDGRKVDLAYELIIDVMKSGRVK 217

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            + + Y ++I GFC A   ++A+ +   M   G +P++VT+NV ++  C    +D+A  L
Sbjct: 218 LSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKL 277

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFC 236
           L LM + G+ PD ++YN LL G C
Sbjct: 278 LKLMERSGIEPDVYSYNQLLKGIC 301



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 23/223 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTV-LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V S+N +L  + K    D   L +  ++   GL  D+ +++ +I  FCK+G  +  + 
Sbjct: 288 PDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGL-CDVVSYNTIIKAFCKIGDTTSAYK 346

Query: 93  VLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
           +   + +    PDVVTFT  IK                        PD I Y TIID LC
Sbjct: 347 LFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLC 406

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G V+ A  +F  M ++ + P+V+++ ++I GFC  +  +EA  L+ EM ++G  P+ V
Sbjct: 407 KSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEV 466

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           T+ +I+  L +  K+  A  +   M+  G   D     TL+ G
Sbjct: 467 TYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIRG 509



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 116/250 (46%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P + ++N+ L         D    L K +  +G+ PD+Y+++ L+   CK   
Sbjct: 246 MRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNC 305

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNT 125
               ++++   +      DVV++ ++IK  CK                    PD +T+  
Sbjct: 306 PDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTI 365

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
            I     +G  + AK+L  +M +  + P+ + YT++I   C +     A  +F +M++QG
Sbjct: 366 FIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQG 425

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P+V++FN +++  CK  ++ EA  L + M   G  PD  TY  ++ G     +++ A 
Sbjct: 426 ISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIAC 485

Query: 246 ELFVSMESMG 255
            ++  M   G
Sbjct: 486 MVWGQMMDKG 495



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 16/254 (6%)

Query: 4   KSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN 63
           +S   G +     ++A+ +FD M + +     +  +N  +G L  +  +D     + ++ 
Sbjct: 13  RSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSID-YNRFIGVLINHSRFDLANHYYSQMG 71

Query: 64  STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
           + G     +T+S  I   CK+      F  +  +L    T +          C PD   +
Sbjct: 72  TRGFSLSSFTYSRFITGLCKV----KNFTFIDELLHDMETLN----------CLPDIWAF 117

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N  +  L  +G +D A E+F K+     KP+VVTYT +I G C    ++ A + + +M+ 
Sbjct: 118 NIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIH 177

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           +G  P+      I+  LC   K+D A  L+ D+M    V+     YN L+ GFC  GR++
Sbjct: 178 KGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRID 237

Query: 243 HAKELFVSMESMGC 256
            A+ +   M   GC
Sbjct: 238 KAQAIKSFMRRNGC 251



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 35/170 (20%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP--------------------------- 153
           + Y + I G  K G +DKA ++F +M   N +                            
Sbjct: 10  LIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQ 69

Query: 154 --------NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
                   +  TY+  I G C   ++     L  +M      P++  FN+ +  L   G+
Sbjct: 70  MGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGR 129

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  + + ++++G +PD  TY  ++ G C   + + A + +  M   G
Sbjct: 130 IDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKG 179



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 47/108 (43%)

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
           +++  + + Y S I G+  A   ++A ++F EM     +   + +N  +  L  + + D 
Sbjct: 3   QSLGAHRLIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDL 62

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           A+     M   G    +FTY+  + G C         EL   ME++ C
Sbjct: 63  ANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNC 110


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 21/244 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG++T     EA  +F ++L        V ++++++  L++N        +F  L   GL
Sbjct: 569 EGNVT-----EAFSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 622

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            P+ +T++ LI+  CK G V     +L  +      PD+VT              YN +I
Sbjct: 623 LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT--------------YNILI 668

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DGLCK G +++AK LF  ++ + + PN VTY +++ G+C + +   A +L  EM+ +GV 
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVP 728

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+   +NVI++  CK  K ++A  L   M++ G      ++NTL++G+C +G++  A  L
Sbjct: 729 PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHL 787

Query: 248 FVSM 251
              M
Sbjct: 788 LEEM 791



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++   +   +K    +     F  + S G+ P++  ++ LI   CK G V+  F V
Sbjct: 519 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV 578

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              IL      DV T++ LI                     K   P+A TYN++I G CK
Sbjct: 579 FRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 638

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG VDKA +L  +M  K + P++VTY  +I G C A +   AK LF ++  +G+ PN VT
Sbjct: 639 QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 698

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D  CK+     A  LL+ M+  GV PDAF YN +L+  C   +   A +LF  M 
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758

Query: 253 SMG 255
             G
Sbjct: 759 EKG 761



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 21/236 (8%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++L    K +  D  + L + +   GL PDLYT+ ILIN FC   R     ++L  ++  
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 101 CFTPDVVTFTSLIK-------------------VCKPDA--ITYNTIIDGLCKQGFVDKA 139
              P+ +T+ +LI                     C  +A  I +NT+++G+CK G ++KA
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            E+  +M +K V+P+  TY+ +I G C   +   A  L  EM  + + P V+T++VI++ 
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 425

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LC+ G +   +++L  M+ +G++P+A  Y TL+      GRV  ++ +   M   G
Sbjct: 426 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 20/234 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++NI++  L K    +   +LF  +   GL P+  T++ +++ +CK    +  F +
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPD--------------------AITYNTIIDGLCKQ 133
           L  +L     PD   +  ++  C  +                     +++NT+I+G CK 
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKS 778

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  L  +M +K   PN VTYTS+I   C A    EAKRL++EM ++ V P   T+
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 838

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
             ++      G M E S+L + M+  G+ PD  TY  ++D +C  G V  A +L
Sbjct: 839 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 21/248 (8%)

Query: 29  MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
           M+   P    +  ++   AK    +    + +R+   G+ PD++ ++ LI  FCK  R+ 
Sbjct: 444 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 503

Query: 89  HGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTII 127
                L  +L     P+  T+ + I                         P+   Y  +I
Sbjct: 504 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +G CK+G V +A  +F  +  + V  +V TY+ +I G       +EA  +F E+ ++G+ 
Sbjct: 564 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 623

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN  T+N ++   CK G +D+AS LL+ M   G+ PD  TYN L+DG C  G +  AK L
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683

Query: 248 FVSMESMG 255
           F  +E  G
Sbjct: 684 FDDIEGRG 691



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S N +LG L K    +    +F  + +  + PD+YT++ +I+  CK+G V     V
Sbjct: 187 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 246

Query: 94  L---GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           L   G   R       +  + + K   PD  TY+ +I+G C +    +AK + L+M D  
Sbjct: 247 LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG 306

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           +KP  +TY ++I GF    D  +A R+  EM+  G++ N++ +N +++ +CK GKM++A 
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 366

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++  M++ GV PD+ TY+ L++G C    +  A EL   M+
Sbjct: 367 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 408



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 22/254 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +G   +  P  A  + + ML +   PP    +N++L    K + ++  L LF+ +   G 
Sbjct: 704 DGYCKSKNPTAAFQLLEEML-LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG- 761

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
           F    + + LI  +CK G++     +L  ++   F P+ VT+TSLI              
Sbjct: 762 FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI-------------- 807

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D  CK G + +AK L+L+M+++NV P   TYTS++ G+    + +E   LF EM+ +G++
Sbjct: 808 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIE 867

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMI------QHGVRPDAFTYNTLLDGFCLTGRV 241
           P+ +T+ V++D  C+ G + EA  L D ++      + G R    T + +  GF + G +
Sbjct: 868 PDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNM 927

Query: 242 NHAKELFVSMESMG 255
           + A E+  SM   G
Sbjct: 928 DEAAEVLRSMVKFG 941



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L +  +     ++ + +   GL P+   ++ L+    K GRV    ++
Sbjct: 414 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 473

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R+      PDV  + SLI                     +  +P+A TY   IDG  K
Sbjct: 474 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ A   F +M    V PNV  YT++I G C   +  EA  +F  ++ + V  +V T
Sbjct: 534 AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT 593

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++V++  L +NGKM EA  +   + + G+ P+AFTYN+L+ G C  G V+ A +L   M
Sbjct: 594 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 17/145 (11%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  ++ N+++  L K   V+   ++F  M    V P+V TYT++I   C   +  +AKR
Sbjct: 186 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 245

Query: 177 LFIE-----------------MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           + +E                 M+D+G+ P++ T++++++  C   +  EA  +L  MI  
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHA 244
           G++P+  TYN L+DGF   G +  A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQA 330



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%)

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           N  PN V +  ++  +       EA  +F+   +   +P++++ N ++ +L K  K++  
Sbjct: 149 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 208

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             + D M  H V PD +TY  ++   C  G V  AK + + M
Sbjct: 209 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM 250


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 25/272 (9%)

Query: 10  DITTITPNEALCIFDYMLR----MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           D+T  T    LC  D +      +   PP  +S+N ++  L +      V S+   +   
Sbjct: 198 DVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGR 257

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           GL P++ T++ +++ FCK G +     +L R++ +  TP+VVTFT+L++           
Sbjct: 258 GLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDA 317

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        P  ++YN +I GLC  G +  A  +   M+     PNV TY+++I G
Sbjct: 318 LDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 377

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           F  A D   A  ++ +M   G +PNVV +  ++D  CK    ++A SL+D M+     P+
Sbjct: 378 FSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 437

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             T+NTL+   C   RV  A  +F  M   GC
Sbjct: 438 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 469



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 18/243 (7%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
            P+ P +  +N ++  L +      V+ ++  +   G+ P+++T+++L+   C+  RV  
Sbjct: 124 RPTEPRL--YNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGA 181

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV-CK---------------PDAITYNTIIDGLCKQ 133
              +L  + R    PD VT+ +++ V CK               P A +YN I+  LC++
Sbjct: 182 ARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCRE 241

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             + +   +   M  + ++PNV+TYT+++  FC A +   A  +   M+  G  PNVVTF
Sbjct: 242 FRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTF 301

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++  L  +G++ +A  +   M+  G  P   +YN L+ G C  G +  A  +  SME 
Sbjct: 302 TALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 361

Query: 254 MGC 256
            GC
Sbjct: 362 HGC 364



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++ +M+    +P  VS +NI++  L          S+   +   G FP++ T+S 
Sbjct: 315 HDALDMWRWMVAEGWAPSTVS-YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 373

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+ F K G +     +   + RS   P+VV +T+++ V                     
Sbjct: 374 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLEN 433

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+NT+I  LC    V +A  +F +M+     PN  TY  +I G     +  +A 
Sbjct: 434 CPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDAL 493

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM   G++ ++VT+N ++  LC+     EA   +  MI  G++P+AFT++ ++  +
Sbjct: 494 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 553

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A  +  +M  + C
Sbjct: 554 CKEGEVRMAAWMLGAMNVVNC 574



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 27/256 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++D M R     P V ++N+++  L +N        +   +   G  PD  T++ +++  
Sbjct: 150 VYDNM-RKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVL 208

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDA 120
           CK+ R+     VL     +   P   ++ +++  +C+                    P+ 
Sbjct: 209 CKLDRLDEATEVL-----AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNV 263

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ITY TI+D  CK G +  A  +  +M      PNVVT+T+++RG       ++A  ++  
Sbjct: 264 ITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRW 323

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G  P+ V++N+++  LC  G +  ASS+L+ M QHG  P+  TY+TL+DGF   G 
Sbjct: 324 MVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGD 383

Query: 241 VNHAKELFVSMESMGC 256
           +  A  ++  M   GC
Sbjct: 384 LGGAISIWNDMSRSGC 399



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P V +++ ++   +K       +S++  ++ +G  P++  ++ +++ FCK   
Sbjct: 359 MEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLM 418

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
            +    ++ ++L     P+ VTF +LI+                      C P+  TYN 
Sbjct: 419 FNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 478

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GL ++G    A  +  +M+   ++ ++VTY +V+ G C      EA     +M+ QG
Sbjct: 479 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 538

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +QPN  TF+ I+   CK G++  A+ +L  M       +   Y  L+   C
Sbjct: 539 IQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELC 589



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + D ML +   PP   +FN ++  L   +     L +F  +   G  P+  T++ 
Sbjct: 420 NQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 478

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   + G       ++  +        +VT              YNT++ GLC+    
Sbjct: 479 LIHGLFREGNCGDALHMVTEMQSHGIELSLVT--------------YNTVVSGLCQTRMS 524

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A     KM  + ++PN  T++++I  +C   +   A  +   M       N++ + ++
Sbjct: 525 REAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTIL 584

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           M ELC   K+ +A + L  M+  G+ P+  T+N L+ G
Sbjct: 585 MAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRG 622



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A  +   +  L   G VD  +    +M+ + V        + +  F  A   + A + F 
Sbjct: 55  ARAHEAAVRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFY 114

Query: 180 EMM-DQG----VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             + D G     +P +  +N ++D L +   +     + D M + GV P+ FTYN L+  
Sbjct: 115 RAVHDLGCARPTEPRL--YNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRA 172

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C   RV  A+++   M   GC
Sbjct: 173 LCQNNRVGAARKMLDEMARKGC 194


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 25/272 (9%)

Query: 10  DITTITPNEALCIFDYMLR----MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           D+T  T    LC  D +      +   PP  +S+N ++  L +      V S+   +   
Sbjct: 194 DVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGR 253

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           GL P++ T++ +++ FCK G +     +L R++ +  TP+VVTFT+L++           
Sbjct: 254 GLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDA 313

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        P  ++YN +I GLC  G +  A  +   M+     PNV TY+++I G
Sbjct: 314 LDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 373

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           F  A D   A  ++ +M   G +PNVV +  ++D  CK    ++A SL+D M+     P+
Sbjct: 374 FSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 433

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             T+NTL+   C   RV  A  +F  M   GC
Sbjct: 434 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 465



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++ +M+    +P  VS +NI++  L          S+   +   G FP++ T+S 
Sbjct: 311 HDALDMWRWMVAEGWAPSTVS-YNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 369

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+ F K G +     +   + RS   P+VV +T+++ V                     
Sbjct: 370 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLEN 429

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+NT+I  LC    V +A  +F +M+     PN  TY  +I G     +  +A 
Sbjct: 430 CPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDAL 489

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM   G++ ++VT+N ++  LC+     EA   +  MI  G++P+AFT++ ++  +
Sbjct: 490 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 549

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V  A  +  +M  + C
Sbjct: 550 CKEGEVRMAAWMLGAMNVVNC 570



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 19/243 (7%)

Query: 32  SPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           +PPP           C  +N     VL ++  +   G+ P+++T+++L+   C+  RV  
Sbjct: 119 APPPSRGSTTTSSTRCCGENMVGAVVL-VYDNMRKDGVHPNVFTYNLLVRALCQNNRVGA 177

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKV-CK---------------PDAITYNTIIDGLCKQ 133
              +L  + R    PD VT+ +++ V CK               P A +YN I+  LC++
Sbjct: 178 ARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCRE 237

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             + +   +   M  + ++PNV+TYT+++  FC A +   A  +   M+  G  PNVVTF
Sbjct: 238 FRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTF 297

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++  L  +G++ +A  +   M+  G  P   +YN L+ G C  G +  A  +  SME 
Sbjct: 298 TALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQ 357

Query: 254 MGC 256
            GC
Sbjct: 358 HGC 360



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 27/256 (10%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++D M R     P V ++N+++  L +N        +   +   G  PD  T++ +++  
Sbjct: 146 VYDNM-RKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVL 204

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDA 120
           CK+ R+     VL     +   P   ++ +++  +C+                    P+ 
Sbjct: 205 CKLDRLDEATEVL-----AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNV 259

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ITY TI+D  CK G +  A  +  +M      PNVVT+T+++RG       ++A  ++  
Sbjct: 260 ITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRW 319

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G  P+ V++N+++  LC  G +  ASS+L+ M QHG  P+  TY+TL+DGF   G 
Sbjct: 320 MVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGD 379

Query: 241 VNHAKELFVSMESMGC 256
           +  A  ++  M   GC
Sbjct: 380 LGGAISIWNDMSRSGC 395



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 21/231 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P V +++ ++   +K       +S++  ++ +G  P++  ++ +++ FCK   
Sbjct: 355 MEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLM 414

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
            +    ++ ++L     P+ VTF +LI+                      C P+  TYN 
Sbjct: 415 FNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 474

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GL ++G    A  +  +M+   ++ ++VTY +V+ G C      EA     +M+ QG
Sbjct: 475 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 534

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +QPN  TF+ I+   CK G++  A+ +L  M       +   Y  L+   C
Sbjct: 535 IQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELC 585



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + D ML +   PP   +FN ++  L   +     L +F  +   G  P+  T++ 
Sbjct: 416 NQAKSLIDKML-LENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNE 474

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+   + G       ++  +        +VT              YNT++ GLC+    
Sbjct: 475 LIHGLFREGNCGDALHMVTEMQSHGIELSLVT--------------YNTVVSGLCQTRMS 520

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A     KM  + ++PN  T++++I  +C   +   A  +   M       N++ + ++
Sbjct: 521 REAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTIL 580

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           M ELC   K+ +A + L  M+  G+ P+  T+N L+ G
Sbjct: 581 MAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRG 618


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 25/246 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV--SHG 90
           PP V +FN+++  L +    +  + + +++   G  P+  +++ L++ FCK  ++  +  
Sbjct: 83  PPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 142

Query: 91  FVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDG 129
           FV L  + R C+ PD+V++ +L+                     K C P  I+YNT+IDG
Sbjct: 143 FVEL-MVSRGCY-PDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDG 200

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K G   +A EL  +M  K ++P+++TYT++  G C  +   EA R F ++ D G++P 
Sbjct: 201 LTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPT 260

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           VV +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G V  A++L  
Sbjct: 261 VVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLG 320

Query: 250 SMESMG 255
            + S G
Sbjct: 321 QLCSRG 326



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L + +   G  P++ T ++LI+  C+ G V     V
Sbjct: 49  PNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEV 108

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +I +   TP+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 109 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCR 168

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A +L  ++K K   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 169 NGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIIT 228

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I   LC+  K++EA      +   G+RP    YN +L G C     ++A +LF  M 
Sbjct: 229 YTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMI 288

Query: 253 SMGC 256
           S GC
Sbjct: 289 SNGC 292



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 85/143 (59%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K C PD ITYN +++G+C++G VD A E    +     +PN V+Y  V++G   A  W +
Sbjct: 10  KGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWED 69

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A++L  EM  +G  PNVVTFN+++  LC+ G ++ A  +L+ + ++G  P++ +YN LL 
Sbjct: 70  AEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLH 129

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            FC   +++ A      M S GC
Sbjct: 130 AFCKQKKMDKAMAFVELMVSRGC 152



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 24/225 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N +L    K K  D  ++  + + S G +PD+ +++ L+   C+ G V     +
Sbjct: 119 PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDL 178

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++     +P ++++ ++I                     K  +PD ITY TI  GLC+
Sbjct: 179 LHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCR 238

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +++A   F K++D  ++P VV Y +++ G C   + + A  LF  M+  G  PN  T
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNEST 298

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN---TLLDG 234
           + ++++ L   G + EA  LL  +   GV    F       +LDG
Sbjct: 299 YTILVEGLAYEGLVKEARDLLGQLCSRGVVNKKFMKKGAVKMLDG 343


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I D M R+    P   ++  ++  + K    +    LF ++   GL P+  T++ LI+ +
Sbjct: 306 ILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 364

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           C  G +   F     +++    P V T+  L+                     K   PDA
Sbjct: 365 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 424

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ITYN +I+G  + G   KA +L  +M  K ++P  VTYTS+I      N   EA  LF +
Sbjct: 425 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 484

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           ++DQGV P+V+ FN ++D  C NG ++ A  LL  M +  V PD  T+NTL+ G C  G+
Sbjct: 485 ILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 544

Query: 241 VNHAKELFVSMESMG 255
           V  A+ L   M+  G
Sbjct: 545 VEEARMLLDEMKRRG 559



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA   F YM++     P + + N ML    K    +    L+  +    +   +YT +I
Sbjct: 196 DEAFKCF-YMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI 254

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++N  CK G++      +G +    F P+VV++ ++I                     K 
Sbjct: 255 MVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 314

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD+ TY ++I G+CK+G +++A  LF KM +  + PN VTY ++I G+C   D   A 
Sbjct: 315 IEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAF 374

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               EM+ +G+ P+V T+N+++  L   G+M EA  ++  M + G+ PDA TYN L++G+
Sbjct: 375 SYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 434

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G    A +L   M S G
Sbjct: 435 SRCGNAKKAFDLHNEMLSKG 454



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N+++  L           + K +   G+ PD  T++ILIN + + G     F +
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P  VT+TSLI V              L ++  + +A +LF K+ D+ V P
Sbjct: 447 HNEMLSKGIEPTHVTYTSLIYV--------------LSRRNRMKEADDLFEKILDQGVSP 492

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V+ + +++ G C   +   A  L  EM  + V P+ VTFN +M   C+ GK++EA  LL
Sbjct: 493 DVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 552

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M + G++PD  +YNTL+ G+   G +  A  +   M S+G
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG 594



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++   ++  +      L   + S G+ P   T++ LI    +  R+     +
Sbjct: 422 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 481

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +IL    +PDV+ F +++                     K   PD +T+NT++ G C+
Sbjct: 482 FEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 541

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V++A+ L  +MK + +KP+ ++Y ++I G+    D  +A R+  EM+  G  P ++T
Sbjct: 542 EGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLT 601

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +N ++  LCKN + D A  LL  M+  G+ PD  TY +L++G 
Sbjct: 602 YNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +I ++ ++   C+    D+A + F  MK+K + P + T   ++  F   N    A  L+ 
Sbjct: 179 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM    +   V TFN++++ LCK GK+ +A   +  M   G +P+  +YNT++ G+   G
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 240 RVNHAKELFVSMESMG 255
            +  A+ +  +M   G
Sbjct: 299 NIEGARRILDAMRVKG 314



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++    +    +    L   +   G+ PD  +++ LI+ + + G +   F 
Sbjct: 526 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 585

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L   F P ++T+ +LIK               LCK    D A+EL  +M +K + 
Sbjct: 586 VRDEMLSIGFNPTLLTYNALIKC--------------LCKNQEGDLAEELLKEMVNKGIS 631

Query: 153 PNVVTYTSVIRGF 165
           P+  TY S+I G 
Sbjct: 632 PDDSTYLSLIEGM 644



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL L     +VK ++V +  ++R  C     +EA + F  M ++G+ P + T N ++   
Sbjct: 166 ELTLSRDRLSVKSSIV-FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLF 224

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K  +M+ A  L   M +  +    +T+N +++  C  G++  A+E    ME +G
Sbjct: 225 LKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG 279


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  +V     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI V CK                    PD ITYNT+I GLCK
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + + + L  +M    +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+ D+A  +   M+  G++PD  TY  +++ FC  G V  A  L   M+
Sbjct: 349 YTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   +K +   G    LY  +I+++ FCK G
Sbjct: 91  LTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  VD+A ELF +M D+ + PN VT+T++I   C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+++T+N ++  LCK G + +  +L+D M  +G++PD  TY TL+DG C  G +  A
Sbjct: 271 GFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETA 330

Query: 245 KEL 247
            E 
Sbjct: 331 FEF 333



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNT 125
           V     +  ++L   F+PD++T+ +LI  +CK                    PD ITY T
Sbjct: 257 VDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  ++++ + V YT+++ G C     ++A+++F EM+  G
Sbjct: 317 LIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK G +  AS LL  M + G  P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K  + D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C       A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGNLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 124/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  I D M R+    P   ++  ++  + K    +    LF ++   GL P+  T++ LI
Sbjct: 281 ARRILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           + +C  G +   F     +++    P V T+  L+                     K   
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 399

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDAITYN +I+G  + G   KA +L  +M  K ++P  VTYTS+I      N   EA  L
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +++DQGV P+V+ FN ++D  C NG ++ A  LL  M +  V PD  T+NTL+ G C 
Sbjct: 460 FEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 519

Query: 238 TGRVNHAKELFVSMESMG 255
            G+V  A+ L   M+  G
Sbjct: 520 EGKVEEARMLLDEMKRRG 537



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA   F YM++     P + + N ML    K    +    L+  +    +   +YT +I
Sbjct: 174 DEAFKCF-YMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI 232

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++N  CK G++      +G +    F P+VV++ ++I                     K 
Sbjct: 233 MVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 292

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD+ TY ++I G+CK+G +++A  LF KM +  + PN VTY ++I G+C   D   A 
Sbjct: 293 IEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAF 352

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
               EM+ +G+ P+V T+N+++  L   G+M EA  ++  M + G+ PDA TYN L++G+
Sbjct: 353 SYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 412

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G    A +L   M S G
Sbjct: 413 SRCGNAKKAFDLHNEMLSKG 432



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N+++  L           + K +   G+ PD  T++ILIN + + G     F +
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 424

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P  VT+TSLI V              L ++  + +A +LF K+ D+ V P
Sbjct: 425 HNEMLSKGIEPTHVTYTSLIYV--------------LSRRNRMKEADDLFEKILDQGVSP 470

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V+ + +++ G C   +   A  L  EM  + V P+ VTFN +M   C+ GK++EA  LL
Sbjct: 471 DVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLL 530

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M + G++PD  +YNTL+ G+   G +  A  +   M S+G
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG 572



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++   ++  +      L   + S G+ P   T++ LI    +  R+     +
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +IL    +PDV+ F +++                     K   PD +T+NT++ G C+
Sbjct: 460 FEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 519

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V++A+ L  +MK + +KP+ ++Y ++I G+    D  +A R+  EM+  G  P ++T
Sbjct: 520 EGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLT 579

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +N ++  LCKN + D A  LL  M+  G+ PD  TY +L++G
Sbjct: 580 YNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 621



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +I ++ ++   C+    D+A + F  MK+K + P + T   ++  F   N    A  L+ 
Sbjct: 157 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM    +   V TFN++++ LCK GK+ +A   +  M   G +P+  +YNT++ G+   G
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 240 RVNHAKELFVSMESMG 255
            +  A+ +  +M   G
Sbjct: 277 NIEGARRILDAMRVKG 292



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++    +    +    L   +   G+ PD  +++ LI+ + + G +   F 
Sbjct: 504 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 563

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L   F P ++T+ +LIK               LCK    D A+EL  +M +K + 
Sbjct: 564 VRDEMLSIGFNPTLLTYNALIKC--------------LCKNQEGDLAEELLKEMVNKGIS 609

Query: 153 PNVVTYTSVIRG 164
           P+  TY S+I G
Sbjct: 610 PDDSTYLSLIEG 621



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL L     +VK ++V +  ++R  C     +EA + F  M ++G+ P + T N ++   
Sbjct: 144 ELTLSRDRLSVKSSIV-FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLF 202

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K  +M+ A  L   M +  +    +T+N +++  C  G++  A+E    ME +G
Sbjct: 203 LKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG 257


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 25/264 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLA-KNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           P+  L +F  +LR       +++ N +L CL   N+  + V  L  R++  G  P+  ++
Sbjct: 173 PDLGLALFGCILRTGLKMDQITA-NTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSY 231

Query: 75  SILINCFCKMGRVSHGFVVLGRILRS--CFTPDVVTFTSLI----------KVC------ 116
           SI++   C          +L  + +     +PDVV ++++I          K C      
Sbjct: 232 SIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEM 291

Query: 117 -----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                KPD +TYN IID LCK   +DKA+ +  +M     +P+ VTY+ +I G+      
Sbjct: 292 TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRL 351

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA ++F EM  +G+ PN+VT N  +  LCK+G+  EA+   D M   G +PD F+Y TL
Sbjct: 352 KEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTL 411

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           L G+   G       LF SM+S G
Sbjct: 412 LHGYASEGCFADMIGLFNSMKSNG 435



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 19/246 (7%)

Query: 16  PNEALCIFDYMLRMHP----SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           P  AL +F+ + R       + P   ++NI++ C  + +  D  L+LF  +  TGL  D 
Sbjct: 133 PALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQ 192

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
            T + L+ C C   R      VL   +                 C P+A++Y+ ++  LC
Sbjct: 193 ITANTLLKCLCYANRTEEAVNVLLHRMSELG-------------CVPNAVSYSIVLKALC 239

Query: 132 KQGFVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
                 +A +L   M  +     P+VV Y++VI GF    +  +A  LF EM  QGV+P+
Sbjct: 240 DNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPD 299

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           VVT+N+I+D LCK   MD+A  +L  M   G +PD  TY+ ++ G+   GR+  A ++F 
Sbjct: 300 VVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFR 359

Query: 250 SMESMG 255
            M+  G
Sbjct: 360 EMKKRG 365



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 22/239 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F I++   AK    D  + +F  +   G+ PD+ T+S +I+ F +MGR++       +++
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMV 502

Query: 99  RSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFV 136
                P+   ++S+I+                      + +PD + ++++I+ LCK G V
Sbjct: 503 ARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRV 562

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A ++F    D   +P V+T+ S+I G+C     ++A ++   M   GV+P++VT+N +
Sbjct: 563 MDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTL 622

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D   KNG++++  +L   M + GV+P+  TY  +L G    GR   A++ F  M   G
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 122/260 (46%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +F  M R     P V ++N+++  L K +  D    + +++ + G  PD  T+S 
Sbjct: 282 GKACSLFHEMTR-QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSC 340

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS-LIKVCK------------------ 117
           +I+ +  +GR+     +   + +    P++VT  S L  +CK                  
Sbjct: 341 MIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKG 400

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD  +Y T++ G   +G       LF  MK   +  N   +T +I  +      ++A 
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM  QGV P+VVT++ ++    + G++ +A    + M+  G++P+   Y++++ GF
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G +  AKEL   M + G
Sbjct: 521 CMHGGLVKAKELVSEMINKG 540



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 96/208 (46%), Gaps = 21/208 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KV 115
           PD+   S +IN  CK GRV     +          P V+TF SLI             K+
Sbjct: 544 PDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKI 603

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                    +PD +TYNT++DG  K G ++    LF +M+ K VKPN VTY  ++ G   
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A     A++ F EM++ G    V  + +I+  LC+N   DEA  L   +    V+     
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITI 723

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
            NT+++      R   AKELF ++ + G
Sbjct: 724 LNTMINAMYKVQRKEEAKELFATISASG 751



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  F+ ++  L K+        +F      G  P + T + LI+ +C +G++   F +
Sbjct: 544 PDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKI 603

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +      PD+VT+ +L+                     K  KP+ +TY  ++ GL +
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A++ F +M +      V  Y  ++ G C  N  +EA  LF ++    V+ ++  
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITI 723

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N +++ + K  + +EA  L   +   G+ P+  TY  ++      G V  A  +F SME
Sbjct: 724 LNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSME 783

Query: 253 SMG 255
             G
Sbjct: 784 KSG 786



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++         D    +   +   G+ PD+ T++ L++ + K GR++ G  +
Sbjct: 579 PGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTL 638

Query: 94  LGRILRSCFTPDVVTF----TSLIKVCKPDAI-----------------TYNTIIDGLCK 132
              + R    P+ VT+      L +  +  A                   Y  I+ GLC+
Sbjct: 639 FREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCR 698

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A  LF K+   NVK ++    ++I          EAK LF  +   G+ PN  T
Sbjct: 699 NNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNEST 758

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + V++  L K+G +++A+++   M + G+ P +   N ++      G +  A
Sbjct: 759 YGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR------- 86
           P + ++N +L    KN   +  L+LF+ +   G+ P+  T+ I++    + GR       
Sbjct: 614 PDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKK 673

Query: 87  ------------VSHGFVVLGRILRS-CFTPDVVTFTSLIKVCKPDAIT-YNTIIDGLCK 132
                       VS   ++LG + R+ C    ++ F  L  +    +IT  NT+I+ + K
Sbjct: 674 FHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               ++AKELF  +    + PN  TY  +I          +A  +F  M   G+ P    
Sbjct: 734 VQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRL 793

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
            N I+  L + G++ +A + L  +    +  +A T + +L  F   G+
Sbjct: 794 LNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGK 841



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           E   Q   P   T+N++MD  C+  + D   +L   +++ G++ D  T NTLL   C   
Sbjct: 147 EAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYAN 206

Query: 240 RVNHAKELFV-SMESMGC 256
           R   A  + +  M  +GC
Sbjct: 207 RTEEAVNVLLHRMSELGC 224


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++     +   D    L + + ++GL P+ +T S+LI+  CK  RV    ++
Sbjct: 280 PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLL 339

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           LG +++              K  K + I Y ++IDGLCK G    A  L   +  +   P
Sbjct: 340 LGSLIQ--------------KGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVP 385

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +  TY+S+I G C   + +EA  +  +MM++GVQP+ VT+ +I+DEL +    D +  +L
Sbjct: 386 DAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKIL 445

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D MI  G++PD FTY   +  +C  GR+  A+ + + M   G
Sbjct: 446 DKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHG 487



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 21/222 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            +S+F  + + G  PD + ++ +++  C  GR      +L   +   F P+VV + +LI 
Sbjct: 161 AMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALID 220

Query: 114 --------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                                 C P+  TY  +I G CK   +D+A  LF +M D  + P
Sbjct: 221 GYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVP 280

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTYT++I+G C     + A RL   M + G+ PN  T +V++D LCK+ ++ EA  LL
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLL 340

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +IQ G++ +   Y +L+DG C  GR   A  L  ++ S G
Sbjct: 341 GSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQG 382



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 25/238 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N  L  LA+++    + S   R+ +     +L T++ LIN +C  G +      L  +L
Sbjct: 44  LNAFLMALARHRMLADMESFASRMPAR----NLRTYTTLINAYCLAGDLPASKRHLSSLL 99

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           R+ F PD   +TS +                     + C   A TY  ++ GLC  G V 
Sbjct: 100 RAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVR 159

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +F  M+     P+   Y +++ G C A    EA+ L  + M +G +PNVV +N ++
Sbjct: 160 EAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALI 219

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  C  G ++ A  + + M  +G  P+  TY  L+ GFC + +++ A  LF  M   G
Sbjct: 220 DGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG 277



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 38/274 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D M+     P PV+ + I++  L +    D    +  ++ + G+ PD++T++I
Sbjct: 404 SEAMLVLDDMMEKGVQPSPVT-YTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTI 462

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            +  +C  GR+     ++  ++     P++VT+ +LI                       
Sbjct: 463 FVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG 522

Query: 116 CKPDAITYNTIIDGLCKQGFVD----------KAKE------LFLKMKDKNVKPNVVTYT 159
           CKP+  +Y  ++  L K+   +          K  E      L  +M    +   +  Y 
Sbjct: 523 CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYN 582

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
             +   C  +  +EAK L IEM    + P+   +  I+   C+   + EA + +D M++ 
Sbjct: 583 CFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS 642

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           G  P   +Y  ++   C  G +  AK++F  M S
Sbjct: 643 GYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLS 676



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 8/233 (3%)

Query: 26  MLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           ML M  H   P + ++N ++   A         S FK + + G  P+  ++++L+    K
Sbjct: 480 MLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIK 539

Query: 84  M---GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI-TYNTIIDGLCKQGFVDKA 139
                 +    V + +I    +   +     ++K+  P  I  YN  +  LC+   +D+A
Sbjct: 540 KESSNNIPANSVSIWKIAEMKYLHGL--LEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEA 597

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           K L ++M+  N+ P+   YTS+I   C      EA      M+  G  P + ++  I+  
Sbjct: 598 KILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISS 657

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           LC+ G +  A  +   M+      +   +  L+DG    G V     L   ME
Sbjct: 658 LCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVME 710



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 34/180 (18%)

Query: 77  LINCF----CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-----KPDAITYNTII 127
           + NCF    C++ R+    ++L  +  +  TP    +TS+I  C       +A+T+   +
Sbjct: 580 IYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTF---V 636

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D + K G++                P + +Y  +I   C       AK++F +M+ +   
Sbjct: 637 DSMVKSGYI----------------PQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYN 680

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
              + + +++D L + G + E SSLL +M +   RP    Y        LTG++  A ++
Sbjct: 681 YEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYAR------LTGKITDANDI 734



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 21/165 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  +N  L  L +    D    L   + S  L P    ++ +I C C++  ++    
Sbjct: 575 PSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALT 634

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLC 131
            +  +++S + P + ++  +I  +C+                     + I +  +IDGL 
Sbjct: 635 FVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLL 694

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           ++G+V +   L   M++KN +P+   Y  +      AND  E  R
Sbjct: 695 QKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQEIAR 739


>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 137/276 (49%), Gaps = 34/276 (12%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T+ P  A  +FD +LR  P P        +   LA+ +            + LF R+   
Sbjct: 31  TLWPELAHQLFDELLR-QPVPVSARPLGGLFSALARAQPSTACADGPALAIDLFNRMTRA 89

Query: 66  G----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--- 117
                + PD YT++ILI+C  +  R   G    GR+L++  TPDV+T++SL++  C    
Sbjct: 90  RRRRVIAPDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKR 149

Query: 118 ----------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYT 159
                           PDAI+Y+ I+   C  G    A +L   M +K  +  P+VV+Y 
Sbjct: 150 TEEALDLLLHRVSGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYN 209

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            VI GF    + ++A  LF  M+ QG  P+VVT+N +++ LCK   MD+A  +L  M+ +
Sbjct: 210 LVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHN 269

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            V+PDA TYN+L+ G+ + G++     L   M S G
Sbjct: 270 SVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQG 305



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 26/241 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-V 92
           P   ++NI++ C  +    D   + F RL  TG+ PD+ T+S L+ CFC M R      +
Sbjct: 97  PDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEALDL 156

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VC----------------------KPDAITYNTIIDG 129
           +L R+  S   PD ++++ ++K  C                       P  ++YN +I G
Sbjct: 157 LLHRV--SGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHG 214

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
             K+G + KA  LF  M  +   P+VVTY SVI   C A   ++A+ +   M+   VQP+
Sbjct: 215 FFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPD 274

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
            VT+N ++      G++ E   LL +M   GV P   T ++++D  C  G++  A+E+F 
Sbjct: 275 AVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFY 334

Query: 250 S 250
           S
Sbjct: 335 S 335



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N+++    K         LF  +   G  PD+ T++ +IN  CK   +    VV
Sbjct: 203 PSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVV 262

Query: 94  LGRILRSCFTPDVVTFTSLI----------------KVCK-----PDAITYNTIIDGLCK 132
           L  ++ +   PD VT+ SLI                KV +     P  +T ++++D LCK
Sbjct: 263 LRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCK 322

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A+E+F        KP++V Y+ ++ G+       +   L   M   GV P++  
Sbjct: 323 HGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPC 382

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN++++   K G MD A    + M++ GV+P+ FTY T++  FC  GR++ A E F  M 
Sbjct: 383 FNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMI 442

Query: 253 SMG 255
            MG
Sbjct: 443 DMG 445



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + + ++  L K+        +F      G  PD+  +SI++          HG+ +
Sbjct: 308 PSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIML----------HGYAI 357

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            G +++     +V+    ++    PD   +N +I+   K G +D A   F  M  + VKP
Sbjct: 358 EGSLVKMIDLCEVMARDGVV----PDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKP 413

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY +VI  FC     ++A   F EM+D GV  +   +  +++    +G   +A   +
Sbjct: 414 NEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEGYLNHGDSMKAEEFI 473

Query: 214 DLM 216
             M
Sbjct: 474 TKM 476



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  ++IML   A       ++ L + +   G+ PDL   +ILIN + K G +    + 
Sbjct: 343 PDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAMLF 402

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L+              +  KP+  TY T+I   CK G +D A E F +M D  V  
Sbjct: 403 FEDMLK--------------QGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPL 448

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +   Y  ++ G+    D  +A+    +M +  + 
Sbjct: 449 DTEVYMCMVEGYLNHGDSMKAEEFITKMKNMDIH 482


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++  L ++   +      K +   GL PD +T+  LIN  CK  R +    +L  +
Sbjct: 259 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 318

Query: 98  LRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLCKQGFV 136
             +   P+VV + +LI             K+ K        P+ ITY+ ++ GLCK G +
Sbjct: 319 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 378

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L  +M   + +P+ +TY  +I G    +   +A RL  EM + G+ PNV T++++
Sbjct: 379 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIM 438

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LC++G+ ++AS LL+ M   G++P+AF Y  L+ G+C  G V+ A E+F  M
Sbjct: 439 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 493



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 14/208 (6%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K + +DT   +   +   G   +  T+++LI   C+ G V   F          F  D+ 
Sbjct: 234 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF---------GFKKDME 284

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            +  +     PD  TY  +I+GLCK    ++AK L  +M    +KPNVV Y ++I GF  
Sbjct: 285 DYGLV-----PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 339

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             + +EA ++  EM+  GVQPN +T++ ++  LCK G+MD AS LL  M++   RPD  T
Sbjct: 340 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTIT 399

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN +++G         A  L   ME+ G
Sbjct: 400 YNLIIEGHFRHHSKKDAFRLLSEMENAG 427



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M      P  V   N++ G + +  + D    + K + + G+ P+  T+  
Sbjct: 309 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 367

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CKMG++    ++L +++R                 +PD ITYN II+G  +    
Sbjct: 368 LVRGLCKMGQMDRASLLLKQMVRDSH--------------RPDTITYNLIIEGHFRHHSK 413

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L  +M++  + PNV TY+ +I G C + +  +A  L  EM  +G++PN   +  +
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G +  A  + D M +  V PD + YN+L+ G    GRV  + + F  M+  G
Sbjct: 474 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 532



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 115/260 (44%), Gaps = 55/260 (21%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K+   + V S FK +   G+  D   + ILI+     G +   F VL  I ++   PDV 
Sbjct: 584 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 643

Query: 108 TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            ++SLI  +CK                    P+ + YN +IDGLCK G +  A+ +F  +
Sbjct: 644 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----------------- 189
             K + PN VTYTS+I G C   D + A  L+ EM+  G+ P+                 
Sbjct: 704 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 763

Query: 190 -----------------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
                            + +FN ++D  CK GKM E   LL +++  G+ P+A T   ++
Sbjct: 764 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 823

Query: 233 DGFCLTGRVNHAKELFVSME 252
            G    G+++    +FV ++
Sbjct: 824 SGLSEAGKLSEVHTIFVELQ 843



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M +++   P +  +N ++  L+K    +     F ++   GL P+ +T+S LI+ +
Sbjct: 489 IFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAIT------------------ 122
            K G +     ++ R+L +   P+ V +  L++   K D I                   
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 123 --YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             Y  +I  L   G ++ A  +   ++     P+V  Y+S+I G C   D  +A  +  E
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 667

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +GV PN+V +N ++D LCK+G +  A ++ + ++  G+ P+  TY +L+DG C  G 
Sbjct: 668 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 727

Query: 241 VNHAKELFVSMESMG 255
           +++A  L+  M + G
Sbjct: 728 ISNAFYLYNEMLATG 742



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++    ++        L   + + G+ P++YT+SI+I+  C+ G       +
Sbjct: 395 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +                K  KP+A  Y  +I G C++G V  A E+F KM   NV P
Sbjct: 455 LEEMT--------------TKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 500

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y S+I G        E+ + F +M ++G+ PN  T++ ++    KNG ++ A  L+
Sbjct: 501 DLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV 560

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G++P+   Y  LL+ +  +  +      F SM   G
Sbjct: 561 QRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 602



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 41/282 (14%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           T    +A  I D M +    P  V  +N ++  L K+       ++F  + + GL P+  
Sbjct: 655 TADREKAFGILDEMSKKGVDPNIVC-YNALIDGLCKSGDISYARNVFNSILAKGLVPNCV 713

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA------------ 120
           T++ LI+  CK+G +S+ F +   +L +  TPD   ++ L   C                
Sbjct: 714 TYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773

Query: 121 --------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                    ++N ++DG CK+G + +  +L   +  + + PN +T  ++I G   A   +
Sbjct: 774 FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLS 833

Query: 173 EAKRLFIE-------------------MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           E   +F+E                   M++QG  P  V  ++I D  CK G +D+A  L 
Sbjct: 834 EVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDH-CKEGNLDKALMLR 892

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D+++         +Y  ++D  C  G+++ A  L   M+  G
Sbjct: 893 DVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 71/133 (53%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           + + ++  CK    D AK++ ++M+++    N VTY  +I G C +    EA     +M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           D G+ P+  T+  +++ LCK+ + +EA +LLD M    ++P+   Y  L+DGF   G  +
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 243 HAKELFVSMESMG 255
            A ++   M + G
Sbjct: 345 EAFKMIKEMVAAG 357


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 20/244 (8%)

Query: 17  NEALCIFDYMLRMHPSPP----PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           ++A+C    +L   P PP     V ++  +L  L++   Y+  + LF  L   G+ P L 
Sbjct: 153 HDAVCA---LLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLV 209

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++++++ + +MGR     V L   +R+                +PD  T +T+I   C+
Sbjct: 210 TYNVVLDVYGRMGRSWPRIVALLDEMRAAGV-------------EPDDFTASTVIAACCR 256

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A   F  +K +   P VVTY ++++ F  A ++ EA R+  EM   G QP+ VT
Sbjct: 257 DGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVT 316

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +     + G  +EA+  LD M   G+ P+AFTYNT++  +   G+V+ A  LF  M+
Sbjct: 317 YNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMK 376

Query: 253 SMGC 256
             GC
Sbjct: 377 KSGC 380



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 56/271 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P ++++N +L  L++   + T  S+  ++ + G  P+  ++S+L+ C+ K G ++     
Sbjct: 487 PCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAI 546

Query: 89  ----HGFVV-------------------LGRILRS-------CFTPDVVTFTSLIKV--- 115
               +G  V                   LG I ++        + PD+V F S++ +   
Sbjct: 547 EKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAK 606

Query: 116 ------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                               PD ITYN+++D   K     +A+++  ++K   VKP+VV+
Sbjct: 607 NGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVS 666

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y +VI GFC      EA+R+  EM+  G+ P VVT++ ++          EA  +++ MI
Sbjct: 667 YNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMI 726

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           QH ++P   TY  ++D +C   R   A+   
Sbjct: 727 QHNLKPMELTYRRVVDSYCKAKRFEEARSFL 757



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 22/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           LR     P + ++N++L    +  + +  +++L   + + G+ PD +T S +I   C+ G
Sbjct: 199 LRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDG 258

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
            V         +     TP VVT+ +L++V                     C+PDA+TYN
Sbjct: 259 LVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYN 318

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +     + GF ++A +    M  K + PN  TY +V+  +      +EA  LF +M   
Sbjct: 319 ELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKS 378

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  PNV T+N I+  L K  +      +L  M + G  P+  T+NT+L      G  ++ 
Sbjct: 379 GCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYV 438

Query: 245 KELFVSMESMG 255
             +   M+S G
Sbjct: 439 TRVLEGMKSCG 449



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 103/229 (44%), Gaps = 21/229 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N + G  A+   Y+        + S GL P+ +T++ ++  +  +G+V     +
Sbjct: 312 PDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALAL 371

Query: 94  LGRILRSCFTPDVVT-------------FTSLIKV--------CKPDAITYNTIIDGLCK 132
             ++ +S   P+V T             FT ++++        C P+ +T+NT++    K
Sbjct: 372 FDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGK 431

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D    +   MK   V+ +  TY ++I  +        A +++ EM   G  P + T
Sbjct: 432 RGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTT 491

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +N +++ L + G    A S++  M   G +P+  +Y+ LL  +   G +
Sbjct: 492 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNI 540


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 137/239 (57%), Gaps = 20/239 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + + M      P  V+ +N +L  L K      V  L  ++ ++GLFP+  T++IL
Sbjct: 229 EALRLINQMGEYGCCPDNVT-YNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNIL 287

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +CK+  +     V+          +++T   ++    PD  TYNT++ GLC +G +D
Sbjct: 288 VHGYCKLKWLKEAAEVI----------ELMTGKGML----PDVWTYNTMVRGLCDEGKID 333

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPNVVTFNVI 196
           +A  L  KM+   + P+VVTY ++I G C+ +  ++A  +L  EM  +GV+ N VT N++
Sbjct: 334 EAVRLRDKMESFKLVPDVVTYNTLIDG-CFEHRGSDAAFKLVEEMKARGVKENGVTHNIM 392

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C  GK+DEAS+++  M++ G  PD FTYNT+++G+C  G++  A ++   M+ MG
Sbjct: 393 IKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKM---MDEMG 448



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + NIM+         D   ++  ++  +G  PD +T++ +IN +CK G+++  + ++  +
Sbjct: 388 THNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447

Query: 98  LRSCFTPDVVTFTSLI-----------------KVCKP----DAITYNTIIDGLCKQGFV 136
            R     D  T  +L+                 K  K     D +TY T+I G  K    
Sbjct: 448 GRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQA 507

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +L+ +MK+  +   ++TY ++IRG C +   ++A     E++++G+ P+  T N+I
Sbjct: 508 DRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNII 567

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C  G +++A    + M++H ++PD FT N LL G C  G +     LF +  S G
Sbjct: 568 IHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKG 626



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 122/257 (47%), Gaps = 23/257 (8%)

Query: 22  IFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D +L+M  S   P  +++NI++    K K       + + +   G+ PD++T++ ++ 
Sbjct: 265 VRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVR 324

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KP 118
             C  G++     +  ++      PDVVT+ +LI  C                     K 
Sbjct: 325 GLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKE 384

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           + +T+N +I   C +G +D+A  + +KM +    P+  TY ++I G+C A    EA ++ 
Sbjct: 385 NGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMM 444

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM  +G++ +  T N ++  +C   ++D+A +L     + G   D  TY TL+ G+   
Sbjct: 445 DEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKD 504

Query: 239 GRVNHAKELFVSMESMG 255
            + + A +L+  M+  G
Sbjct: 505 EQADRALKLWEEMKETG 521



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 14/208 (6%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K++  D  L L++ +  TG+   + T++ +I   C  G+       L  +L         
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLE-------- 554

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 K   PD  T N II G C +G V+KA +   KM + ++KP++ T   ++RG C 
Sbjct: 555 ------KGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCR 608

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                +   LF   + +G   + VT+N+I+   CK  ++++A  L+  M    + PD +T
Sbjct: 609 EGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYT 668

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YN ++ G    GR   A++L +     G
Sbjct: 669 YNAIVTGLTKAGRTEEAEKLALKFAEKG 696



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 18/245 (7%)

Query: 11  ITTITPNEALCIFDYMLRM-HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP 69
           I++  P+ +L    ++LR  H  P P+   ++    ++K  H      +F ++      P
Sbjct: 116 ISSDHPHHSL--HAHLLRSDHTIPKPLLDTSLAAYVISKQPHLGH--QIFNKMKRLRFRP 171

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIID 128
           +L T + L+N   +    SH  V         F+ +V  F   +K+  +P+  T+N +I 
Sbjct: 172 NLLTCNTLLNALVR-SNSSHSLV---------FSREV--FQDAVKLGVQPNVNTFNILIH 219

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G C     ++A  L  +M +    P+ VTY +V+   C  +   + + L ++M + G+ P
Sbjct: 220 GYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFP 279

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N  T+N+++   CK   + EA+ +++LM   G+ PD +TYNT++ G C  G+++ A  L 
Sbjct: 280 NRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLR 339

Query: 249 VSMES 253
             MES
Sbjct: 340 DKMES 344



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 32/232 (13%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++  L  +   D  +     L   GL PD  T +I+I+ +C  G V   F    
Sbjct: 526 IITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHN 585

Query: 96  RILRSCFTPDVVT--------------------FTSLIKVCKP-DAITYNTIIDGLCKQG 134
           +++     PD+ T                    F + I   KP D +TYN II   CK+ 
Sbjct: 586 KMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKER 645

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ------- 187
            ++ A +L  +M+ KN++P+  TY +++ G   A    EA++L ++  ++G Q       
Sbjct: 646 RLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTS 705

Query: 188 PNVVTFNVIMDE----LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           P + T +++  E    LC  GK  +A  L     Q GV  + +TY  L+DG 
Sbjct: 706 PELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGL 757



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDK---AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +P+ +T NT+++ L +         ++E+F       V+PNV T+  +I G+C  N+  E
Sbjct: 170 RPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEE 229

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A RL  +M + G  P+ VT+N ++  LCK  ++ +   LL  M   G+ P+  TYN L+ 
Sbjct: 230 ALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVH 289

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C    +  A E+   M   G
Sbjct: 290 GYCKLKWLKEAAEVIELMTGKG 311



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 25/204 (12%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P + + NI+L  L +    +  L+LF    S G   D  T++I+I+ FCK  R+  
Sbjct: 590 HSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLED 649

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK---- 145
            F ++  +                K  +PD  TYN I+ GL K G  ++A++L LK    
Sbjct: 650 AFDLMTEMEG--------------KNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEK 695

Query: 146 ---MKDKNVKPNVVT----YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
              +K ++  P + T    Y+  I   C    + +A +LF +   +GV  N  T+  +MD
Sbjct: 696 GQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMD 755

Query: 199 ELCKNGKMDEASSLLDLMIQHGVR 222
            L K  K    +SLL  M+   ++
Sbjct: 756 GLLKRRKSFTTTSLLPFMVSATIQ 779



 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE---ASSLLDLMIQHGVRPDAFTYNTLL 232
           ++F +M     +PN++T N +++ L ++        +  +    ++ GV+P+  T+N L+
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILI 218

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G+C       A  L   M   GC
Sbjct: 219 HGYCSDNNTEEALRLINQMGEYGC 242


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 25/257 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIM-LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           +FD M  +    P  SS+ +M +GC    K  +    L   +   G  PD  T ++++  
Sbjct: 204 VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR-GFIPDNATCTLILTA 261

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPD 119
            C+ G V+       +++   F P+++ FTSLI  +C                    KP+
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPN 321

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
             T+  +IDGLCK+G+ +KA  LFLK+ +    KPNV TYTS+I G+C  +  N A+ LF
Sbjct: 322 VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLF 381

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M +QG+ PNV T+  +++  CK G    A  L++LM   G  P+ +TYN  +D  C  
Sbjct: 382 SRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKK 441

Query: 239 GRVNHAKELFVSMESMG 255
            R   A EL     S G
Sbjct: 442 SRAPEAYELLNKAFSCG 458



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++  ++L  L +N   +  +  F+++   G  P+L   + LI+  CK G +   F +
Sbjct: 250 PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 309

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           L  ++R+ + P+V T T+LI  +CK                     P+  TY ++I G C
Sbjct: 310 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 369

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+  +++A+ LF +MK++ + PNV TYT++I G C A  +  A  L   M D+G  PN+ 
Sbjct: 370 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 429

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N  +D LCK  +  EA  LL+     G+  D  TY  L+   C    +N A   F  M
Sbjct: 430 TYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM 489

Query: 252 ESMG 255
              G
Sbjct: 490 NKTG 493



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  ++R     P V ++  M+G   K    +    LF R+   GLFP++ T++ L
Sbjct: 340 KAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 399

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           IN  CK G     + ++  +    F P++ T+ + I  +CK                   
Sbjct: 400 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGL 459

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  +I   CKQ  +++A   F +M     + ++     +I  FC      E++R
Sbjct: 460 EADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESER 519

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  ++  G+ P   T+  ++   CK G +D A      M +HG  PD+FTY +L+ G C
Sbjct: 520 LFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 579

Query: 237 LTGRVNHAKELFVSMESMG 255
               V+ A +L+ +M   G
Sbjct: 580 KKSMVDEACKLYEAMIDRG 598



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ I++    K    +  L+ F R+N TG   D+  ++ILI  FC+  ++        R+
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKES----ERL 520

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +      +V    LI    P   TY ++I   CK+G +D A + F  MK     P+  T
Sbjct: 521 FQ------LVVSLGLI----PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFT 570

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD-LM 216
           Y S+I G C  +  +EA +L+  M+D+G+ P  VT   +  E CK      A  LL+ L 
Sbjct: 571 YGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD 630

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            +  +R    T  TL+   C   +V  A   F
Sbjct: 631 KKLWIR----TVRTLVRKLCSEKKVGVAALFF 658



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P +IT N +++   + G ++ A+ +F +M  + V P+  +Y  ++ G        EA R 
Sbjct: 180 PSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRW 239

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G  P+  T  +I+  LC+NG ++ A      MI  G +P+   + +L+DG C 
Sbjct: 240 LTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCK 299

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A E+   M   G
Sbjct: 300 KGSIKQAFEMLEEMVRNG 317



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y    D L   G + KA E+   M               +R F      NEA  + ++M 
Sbjct: 130 YLVTADSLLANGNLQKAHEVMRCM---------------LRNFSEIGRLNEAVGMVMDMQ 174

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           +QG+ P+ +T N +++   + G ++ A ++ D M   GV PD+ +Y  ++ G    G++ 
Sbjct: 175 NQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQ 234

Query: 243 HAKELFVSMESMG 255
            A      M   G
Sbjct: 235 EADRWLTGMIQRG 247


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 125 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 184

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 185 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRC 244

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 245 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 304

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 305 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 364

Query: 252 ESM 254
            S+
Sbjct: 365 LSV 367



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 196 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEI 255

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 256 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 315

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+   ++P+  T
Sbjct: 316 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGT 375

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 376 YTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 83  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 142

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  ++YNT+++G  + G +D+   L   
Sbjct: 143 DI--------RVAQSVF--DAITKWGL----RPSVVSYNTLMNGYIRLGDLDEGFRLKSA 188

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V+P+V TY+ +I G C  +  ++A  LF EM+ +G+ PN VTF  ++D  CKNG+
Sbjct: 189 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGR 248

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A +L   M   G
Sbjct: 249 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 298



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 141 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 194

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 195 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAME 254

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 255 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 314

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+   ++PD  
Sbjct: 315 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTG 374

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 375 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 403


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 136/279 (48%), Gaps = 37/279 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRL--- 62
           T++  +   +FD +LR   +P P  + N  L  LA+     T        ++LF R+   
Sbjct: 50  TLSTEDTHHLFDELLR-QTTPVPERALNGFLTALARAPSSATCRDGPSLAVALFNRICRE 108

Query: 63  --NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
                   P + T++IL++C C+  R + GF + GR L++    DV+    L+K +C   
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAK 168

Query: 117 ------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM--KDKNVKPNVV 156
                             +PD I+Y+T++  LC+     +A +L   M  K     PNVV
Sbjct: 169 RSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVV 228

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           +Y +VI GF    + ++A  LF EMM QGV P+VVT++  +D LCK   MD+A  +L  M
Sbjct: 229 SYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQM 288

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I +G  PD  TYN ++ G+ + G+      +F  M   G
Sbjct: 289 ISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRG 327



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 24/240 (10%)

Query: 40  NIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           NI+L CL   K  D  ++ L  R+   G+ PD  ++S ++   C+  R      +L  ++
Sbjct: 158 NILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMV 217

Query: 99  RSCF--TPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGF 135
           +     +P+VV++ ++I          K C            PD +TY++ ID LCK   
Sbjct: 218 KKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARA 277

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +DKA+ +  +M     +P+ VTY  +I G+     W E   +F EM  +G+ P++ T N 
Sbjct: 278 MDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNS 337

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M  LCK+GK  EA+   D M   G +PD  TY+ LL G+   G V     LF SME  G
Sbjct: 338 YMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNG 397



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 120/233 (51%), Gaps = 22/233 (9%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S +NI++    K    D  + +F ++   G+ PD +T+  +I  F +MGR++       +
Sbjct: 403 SVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQ 462

Query: 97  ILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQG 134
           ++     PD + + SLI+                      + +P+ + +N+II+ LCK+G
Sbjct: 463 MIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEG 522

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A+++F  +     +P+V+T+ S+I G+       +A  +   M+  G++P+VVT++
Sbjct: 523 RVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYS 582

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            ++D  C+NG++D+   L   M+  GV+P   TY  +L G    GR   AK++
Sbjct: 583 ALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKM 635



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +        +LF  +   G+ PD+ T+S  I+  CK   +    +V
Sbjct: 225 PNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELV 284

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +++ + F PD VT+  +I                     +   PD  T N+ +  LCK
Sbjct: 285 LRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCK 344

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   +A E F  M  K  KP++VTY+ ++ G+       +   LF  M   G+  +   
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSV 404

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++D   K G MDEA  +   M + GV PDA+TY T++  F   GR+  A + F  M 
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 253 SMG 255
           +MG
Sbjct: 465 AMG 467



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 57/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N M+   +    +     +F+ +   GL PD++T +  ++  CK G+       
Sbjct: 295 PDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEF 354

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKP---------------------DAITYNTIIDGLCK 132
              +      PD+VT++ L+                          D   YN +ID   K
Sbjct: 355 FDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGK 414

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+A  +F +M+++ V P+  TY +VI  F       +A   F +M+  G++P+ + 
Sbjct: 415 RGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIV 474

Query: 193 ------------------------------------FNVIMDELCKNGKMDEASSLLDLM 216
                                               FN I++ LCK G++ EA  + DL+
Sbjct: 475 YNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLV 534

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I  G RPD  T+N+L+DG+ L G++  A  +  +M S+G
Sbjct: 535 IHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG 573



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 15/239 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  IFD ++ +   P  V +FN ++         +    +   + S G+ PD+ T+S L
Sbjct: 526 EAQDIFDLVIHIGERPD-VITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSAL 584

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C+ GR+  G ++   +L               K  KP  ITY  I+ GL   G   
Sbjct: 585 LDGYCRNGRIDDGLILFREMLS--------------KGVKPTTITYGIILHGLFNDGRTV 630

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK++  +M +     ++ T   ++ G C  N  +EA  LF ++    V+ N+   N ++
Sbjct: 631 GAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMI 690

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D + K  K +EA+ L D +   G+ P+A TY  ++      G V  A  +F  ME  GC
Sbjct: 691 DAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGC 749



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 22/245 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D M+ +   P  V +++ +L    +N   D  L LF+ + S G+ P   T+ I
Sbjct: 560 EKAFGVLDAMISVGIEPD-VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-----KVCKPDAITY-------- 123
           +++     GR      +   ++ S  T D+ T   ++       C  +AI          
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 124 --------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                   NT+ID + K    ++A ELF  +    + PN  TY  +I          EA 
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEAD 738

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M   G  P+    N I+  L + G++ +A + L  +    +  +A T + +L  F
Sbjct: 739 NMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLF 798

Query: 236 CLTGR 240
              G+
Sbjct: 799 SRKGK 803



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S+  I+LG L +N   D  ++LFK+L +  +  ++   + +I+   K+ +      +  
Sbjct: 648 ISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELF- 706

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                    D ++ T L+    P+A TY  +I  L K+G V++A  +F  M+     P+ 
Sbjct: 707 ---------DSISATGLV----PNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSS 753

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
               ++IR      + ++A     ++  + +     T ++++    + GK  E    L  
Sbjct: 754 RLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKSLPA 813

Query: 216 MIQ 218
           M Q
Sbjct: 814 MYQ 816


>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
 gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
          Length = 382

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I   M R H   P V ++N ++  L KN   D    LF+ + S    P L T++ 
Sbjct: 65  DQALAILHEM-RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP-LVTYNT 122

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     G++     V   +L S             + C PD IT   ++DGLCK+  V
Sbjct: 123 LLDGLFWTGKLESAMAV--ELLESMKA----------RGCSPDVITSTILVDGLCKESKV 170

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A E+  +M D    PN+VT  S++ G C A   ++A  L  +M  +G  PNVVT+  +
Sbjct: 171 AAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 230

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D LCK G++ +A +L ++M   G   D  TY+TL+DG C  GRV+ A  L   M  MG
Sbjct: 231 IDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMG 289



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 23/256 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           FD M R +   P +   +I++  L K K    VL  F+ +   G+  D   +++L++   
Sbjct: 1   FDEM-RSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLW 59

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---PDA----------------IT 122
           K  R+     +L  +      P+VVT+ SLI  +CK   PD                 +T
Sbjct: 60  KEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPLVT 119

Query: 123 YNTIIDGLCKQGFVDKAK--ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           YNT++DGL   G ++ A   EL   MK +   P+V+T T ++ G C  +    A  +  E
Sbjct: 120 YNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCE 179

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+D G  PN+VT   ++  LC+  ++ +A +L+  M   G  P+  TY TL+DG C  GR
Sbjct: 180 MLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGR 239

Query: 241 VNHAKELFVSMESMGC 256
           V  A  L+  M   GC
Sbjct: 240 VKDAGNLYEVMTGDGC 255



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 35/265 (13%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLS--LFKRLNSTGLFPDLYT 73
           P+ A  +F++M  +  SP  + ++N +L  L      ++ ++  L + + + G  PD+ T
Sbjct: 99  PDRAQELFEHMKSVECSP--LVTYNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVIT 156

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------------- 113
            +IL++  CK  +V+  + VL  +L +   P++VT  SL+                    
Sbjct: 157 STILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMT 216

Query: 114 -KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
            + C P+ +TY T+IDGLCK G V  A  L+  M       +VVTY+++I G C     +
Sbjct: 217 CRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVD 276

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH------GVRPDAF 226
           EA  L   M+  G   + +T+N+   E    GKM +  SL   M  H      G + D F
Sbjct: 277 EAHLLLARMVRMGTPSSTLTYNLQHFE----GKMVKVDSLEKGMAIHIQAAEKGYKRDDF 332

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
             NTL+D +   G +  A+ +F SM
Sbjct: 333 LSNTLVDMYAKCGSMVEAERVFRSM 357


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWGLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           N  CK  ++     +   +L +   P+ VTFT+LI                     +   
Sbjct: 214 NGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ITYNT+I GLCK+G + +A++L  +M  K +KP+ +TYT++I G C       A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 238 TGRVNHAKELFVSMESMG 255
            G V    +L   M+  G
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    +    LF  + + GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   ++  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +   +A  LF EM++ G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 121/229 (52%), Gaps = 17/229 (7%)

Query: 11  ITTITPNEALCIFDYMLRMHP-SP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-L 67
           I T+   +A+   D+  RM   +P P +  FN++ G +AK++HY T +SL K L+S G  
Sbjct: 47  IRTLETADAVVAVDFFHRMLTLTPFPCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDG 106

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
             D+ T +I INC C M + + GF VLG + +    P +VT               NTI+
Sbjct: 107 SADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTL--------------NTIV 152

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +GLC +G V+ A  L  KM++     N  TY +++ G C   D + A     +M+ + + 
Sbjct: 153 NGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLG 212

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           PNVV +N I+D LCK G + EA  LL  M    V P+  TYN L+ G C
Sbjct: 213 PNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLC 261



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 59/299 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHS 75
            EAL +   M  ++  P  V+   ++ G   +   +   + LF  +    G+ PD+ T S
Sbjct: 232 GEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFS 291

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
           IL++ FCK G +     V+G ++R    P+VVT+ SLI                      
Sbjct: 292 ILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVRE 351

Query: 114 -KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND-- 170
            + C P  +T+N++I G CK   VDKA  L  +M  K + P+V T+TS+I GFC      
Sbjct: 352 GEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPL 411

Query: 171 -------------------------------W--NEAKRLFIEMMDQGVQPNVVTFNVIM 197
                                          W  +EA  LF  MM  G+  ++V +N+++
Sbjct: 412 AARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIML 471

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D +CK GK+++A  LL  ++  G++ D++TYN ++ G C  G ++ A+EL   M+  GC
Sbjct: 472 DGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGC 530



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 24/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHS 75
            A  +  +M+R+   P  V+  +++ G   +++  +   V  L  R    G  P + TH+
Sbjct: 305 RAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVR-EGEGCLPSVVTHN 363

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAI---------- 121
            LI+ +CK+  V     +L  ++     PDV T+TSLI    +V KP A           
Sbjct: 364 SLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEH 423

Query: 122 -------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
                  T   ++DGL K     +A  LF  M    +  ++V Y  ++ G C     N+A
Sbjct: 424 GQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDA 483

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++L   ++ +G++ +  T+N+++  LC+ G +D+A  LL  M ++G  P+  +YN  + G
Sbjct: 484 RKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQG 543

Query: 235 FCLTGRVNHAKELFVSMESMG 255
                 +  +++    M+  G
Sbjct: 544 LLRKYDIARSRKYLQIMKDKG 564



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 22/238 (9%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            EA+ +F  M+R      P V + N ++    K K  D  +SL   +   GL PD++T +
Sbjct: 339 EEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWT 398

Query: 76  ILINCFCKMGR-----------VSHG--------FVVLGRILRSCFTPDVVT-FTSLIKV 115
            LI  FC++ +             HG         VVL  +L+     + VT F +++K 
Sbjct: 399 SLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKS 458

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
               D + YN ++DG+CK G ++ A++L   +  K +K +  TY  +I+G C     ++A
Sbjct: 459 GLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDA 518

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           + L  +M + G  PN  ++NV +  L +   +  +   L +M   G   DA T   L+
Sbjct: 519 EELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLI 576



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 14/179 (7%)

Query: 25  YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           + ++ H   P + +  ++L  L K       ++LF+ +  +GL  D+  ++I+++  CKM
Sbjct: 418 FTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKM 477

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G+++       R L SC          L+K  K D+ TYN +I GLC++G +D A+EL  
Sbjct: 478 GKLNDA-----RKLLSCV---------LVKGLKIDSYTYNIMIKGLCREGLLDDAEELLR 523

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
           KMK+    PN  +Y   ++G     D   +++    M D+G   +  T  +++  L  N
Sbjct: 524 KMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSAN 582



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
             +V T N+ ++ LC   K     ++L LM + G+ P   T NT+++G C+ G VNHA  
Sbjct: 107 SADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALW 166

Query: 247 LFVSMESMG 255
           L   ME++G
Sbjct: 167 LVEKMENLG 175


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 21/230 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++NIM+G + K     T  SLF ++   GL PD+ T++ LI+ + K+G +   F +  
Sbjct: 252 VFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFE 311

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            +      PDV+T+ +LI                        KP+ +TY+T+ID LCK+ 
Sbjct: 312 EMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEH 371

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A +  L M+   + PN  TYTS+I   C A   ++A +L  EM+   V  NVVT+ 
Sbjct: 372 MLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYT 431

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            ++D LCK G+M EA  L   MI+ GV P+  TY  L+ G     RV +A
Sbjct: 432 TLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENA 481



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+ T     A  +F  M +M  +P  V+ +N ++    K    D    LF+ +   G 
Sbjct: 265 EGDMVT-----AKSLFHQMKQMGLTPDIVT-YNSLIDGYGKLGLLDESFCLFEEMKDVGC 318

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------- 117
            PD+ T++ LINCFCK  ++   F  L  +  S   P+VVT+++LI  +CK         
Sbjct: 319 EPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIK 378

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P+  TY ++ID  CK G++  A +L  +M    V  NVVTYT+++ G C
Sbjct: 379 FLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLC 438

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 EA+ LF  M+  GV PN+ T+  ++    KN +++ A  LL  + +  ++PD  
Sbjct: 439 KEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLL 498

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            Y T++ G C   ++   + +   M++ G
Sbjct: 499 LYGTIIWGLCSQNKLEECEFVMSEMKACG 527



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 123/291 (42%), Gaps = 57/291 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E+ C+F+ M  +    P V ++N ++ C  K +           + ++GL P++ T+S 
Sbjct: 304 DESFCLFEEMKDVG-CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYST 362

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP----------------- 118
           LI+  CK   +      L  + R   +P+  T+TSLI   CK                  
Sbjct: 363 LIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQ 422

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS--------------- 160
              + +TY T++DGLCK+G + +A++LF  M    V PN+ TYT+               
Sbjct: 423 VGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENAL 482

Query: 161 --------------------VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                               +I G C  N   E + +  EM   G++ N V + + MD  
Sbjct: 483 ELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAY 542

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            K GK  EA +LL  M   GV     T+  L+DG C  G V  A + F  M
Sbjct: 543 FKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARM 593



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 22/205 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------- 114
           ++ T++ L++  CK GR+     +   ++++  TP++ T+T+L+                
Sbjct: 426 NVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELL 485

Query: 115 ------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                   KPD + Y TII GLC Q  +++ + +  +MK   ++ N V YT  +  +   
Sbjct: 486 KEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKT 545

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
               EA  L  EM D GV+  +VTF V++D LCK G ++EA      M    ++P+    
Sbjct: 546 GKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAV 605

Query: 229 NT-LLDGFCLTGRVNHAKELFVSME 252
            T L+DG C    +  AK+LF  M+
Sbjct: 606 CTALIDGLCKNNYIEAAKKLFDEMQ 630



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 13/193 (6%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            L+L + +   G+   + T  +LI+  CK G V        R+      P+ V       
Sbjct: 551 ALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVA------ 604

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           VC         +IDGLCK  +++ AK+LF +M+DKN+ P+ + YT++I G     D+ EA
Sbjct: 605 VC-------TALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEA 657

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +   M + G++ ++  +  ++  L +   + +A   L+ MI  G+ PD      LL  
Sbjct: 658 LNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRK 717

Query: 235 FCLTGRVNHAKEL 247
           +   G ++ A EL
Sbjct: 718 YYELGSIDEAIEL 730



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN-VVTYTSVIRGFCYANDWNEAKRLFI 179
           +T+  +IDGLCK+G V++A + F +M D N++PN V   T++I G C  N    AK+LF 
Sbjct: 568 VTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFD 627

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM D+ + P+ + +  ++D   K+    EA ++   M + G+  D   Y +L+ G     
Sbjct: 628 EMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGN 687

Query: 240 RVNHAKELFVSMESMG 255
            V  A+     M   G
Sbjct: 688 LVQQARMFLNEMIGKG 703



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           VC P    ++ +     + G +++A + F +M    V P   +  + +         + +
Sbjct: 177 VCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLS 236

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            + F +M+  G+  +V T+N+++  +CK G M  A SL   M Q G+ PD  TYN+L+DG
Sbjct: 237 NKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDG 296

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           +   G ++ +  LF  M+ +GC
Sbjct: 297 YGKLGLLDESFCLFEEMKDVGC 318


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L  LA+++    V  LF++L +    P+++T +I+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  R+      PDVVTF SLI                       CK D +TYN +I+  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G ++ A   F  MK + V  NVVT+++ +  FC      EA +LF +M  +G+  N  
Sbjct: 270 KFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  LLD M++ GV  +  TY  L+DG C   +V  A+++   M
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 252 ESMG 255
           E  G
Sbjct: 390 EKAG 393



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M  M    P V +FN ++    K    D V  L + +  +G   D+ T++ L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INCFCK GR+   +     + R     +VVTF+              T +D  CK+G V 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFS--------------TFVDAFCKEGLVR 310

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M+ + +  N  TYT +I G C A   ++A  L  EM+ QGV  NVVT+ V++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK  K+ EA  +L +M + GVR +   Y TL+ G  +      A  L   M++ G
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKG 428



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 21/230 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N ++ C  K    +T    F  +   G+  ++ T S  ++ FCK G V     +  
Sbjct: 258 VVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFA 317

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP----DAI----------------TYNTIIDGLCKQG 134
           ++       +  T+T LI   CK     DAI                TY  ++DGLCK+ 
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKER 377

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A+++   M+   V+ N + YT++I G     +  +A  L  EM ++G++ ++  + 
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            ++  LC   K+DEA SLL  M + G+ P+   Y T++D    +G+V  A
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 43/263 (16%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F+  +    K       + LF ++   G+  + +T++ LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
            ++R     +VVT+T L+  +CK                     + + Y T+I G     
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             +KA  L  +MK+K ++ ++  Y ++I+G C  +  +EAK L  +M + G++PN + + 
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRP----------------------DAFTYNTLL 232
            +MD   K+GK+ EA ++L  ++  G +P                      D   Y  LL
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 532

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
           DG+   G ++ A  L   M   G
Sbjct: 533 DGYLKQGNLHDAFALKAKMIDSG 555



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A   +T++  L  +G +D A     ++++  V PN  T   ++            +RLF 
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLF- 180

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
              +Q   PNV TFN+++D LCK G++ EA SL   M + G  PD  T+N+L+DG+   G
Sbjct: 181 ---EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 240 RVNHAKELFVSMESMGC 256
            ++  ++L   M   GC
Sbjct: 238 ELDEVEQLVEEMRRSGC 254



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 49  NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
           NK+ +  L L   + + GL  D+  +  LI   C + ++     +L ++  S   P+ + 
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470

Query: 109 FTSLIKVC-----KPDAIT-YNTIIDGLCK--QGFVDKAKELFLKMKDKNVKPNVVTYTS 160
           +T+++  C      P+AI     I+D   +   G +++A +LF +M  K +  + V YT+
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTA 530

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           ++ G+    + ++A  L  +M+D G+Q ++  +   +   C    M EA  +   MI HG
Sbjct: 531 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 590

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + PD   YN      CL  ++   +EL    +S G
Sbjct: 591 IAPDRAVYN------CLITQIPEIRELGGGNKSSG 619


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 17/240 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E LC+   M  +   P    ++  ++    + +  +    +   +  +GL P + T +I
Sbjct: 247 EEGLCMLQKMKELGWRPT-TRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTI 305

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGF 135
           ++N +C+ GR+S                 V  F S+  K C+P+  TYN I+ G C  G 
Sbjct: 306 VVNAYCREGRMSGA---------------VRVFESMRFKGCEPNVWTYNAIVQGFCNAGK 350

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V KA  L  +M++  V+P+VVTY  +IRG C       A RL   M   G+  +  T+NV
Sbjct: 351 VYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNV 410

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D LCK GK+DEA SL D +   G+RP++ T+NT+++G C  G+ + A     +M S G
Sbjct: 411 LIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAG 470



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 23/256 (8%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKN---KHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           L +F +M R  P  P  +++N ++  L +    +H    LSL  R   +G  PD +T + 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVR---SGWRPDAFTFNS 169

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-----------------VCKPD 119
           LI  +C+  ++     +  ++    F+ D V++ +LI+                 + +PD
Sbjct: 170 LILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPD 229

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             T+  ++ GLC  G  ++   +  KMK+   +P    Y +++  +C      EA+++  
Sbjct: 230 MYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILN 289

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM D G+ P VVT  ++++  C+ G+M  A  + + M   G  P+ +TYN ++ GFC  G
Sbjct: 290 EMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAG 349

Query: 240 RVNHAKELFVSMESMG 255
           +V  A  L   M   G
Sbjct: 350 KVYKAMALLDQMRECG 365



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 22/255 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P V ++N+++     + H  +   L + +   GL  D YT+++L
Sbjct: 353 KAMALLDQM-RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVL 411

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+  CK G+V     +   +      P+ VTF ++I  +CK                   
Sbjct: 412 IDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGY 471

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  TY+  I+ LCK     +      +M  K+VKP+ V YT VI       ++  A R
Sbjct: 472 APDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATR 531

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++ +M+ QG  P+VVT+   +   C  G++DEA +++  M +     DA  YNTL+DG  
Sbjct: 532 IWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHT 591

Query: 237 LTGRVNHAKELFVSM 251
             G+ + A  +   M
Sbjct: 592 SIGQTDRAVTILKHM 606



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 48/267 (17%)

Query: 26  MLRMHP-SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL----FPDLYTHS----- 75
           +LR+H  SPPP+  F         ++ + ++L+ F R   T L    F  +Y H+     
Sbjct: 77  VLRLHALSPPPLRPFF--------DRPFRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPT 128

Query: 76  -----ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------VC 116
                 LI   C+   + H    L  ++RS + PD  TF SLI                C
Sbjct: 129 GATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFC 188

Query: 117 K-------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
           K        DA++Y  +I+G C+ G +D+A ELF +M     +P++ T+ ++++G C A 
Sbjct: 189 KMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM----TQPDMYTHAALVKGLCDAG 244

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
              E   +  +M + G +P    +  ++D  C+  K +EA  +L+ M   G+ P   T  
Sbjct: 245 RGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCT 304

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
            +++ +C  GR++ A  +F SM   GC
Sbjct: 305 IVVNAYCREGRMSGAVRVFESMRFKGC 331



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +  I++    +       + +F+ +   G  P+++T++ ++  FC  G+V     +
Sbjct: 298 PCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL 357

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L ++      PDVVT+  LI+                         D  TYN +ID LCK
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK 417

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A  LF  ++ + ++PN VT+ +VI G C A  ++ A      M+  G  P+  T
Sbjct: 418 TGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++  ++ LCK     E    +D M+Q  V+P    Y  +++          A  ++  M 
Sbjct: 478 YSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMV 537

Query: 253 SMGC 256
           S GC
Sbjct: 538 SQGC 541



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 21/212 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++  L K    D   SLF  L   G+ P+  T + +IN  CK G+       L  +
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENM 466

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           + + + PD  T++  I                     K  KP  + Y  +I+ L  +   
Sbjct: 467 ISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNY 526

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  ++ +M  +   P+VVTYT+ +R +C     +EA+ +  EM       + + +N +
Sbjct: 527 GLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTL 586

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           +D     G+ D A ++L  M      P+ FT+
Sbjct: 587 IDGHTSIGQTDRAVTILKHMTGVASMPNHFTF 618



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD +      P  V+ FN ++  L K   +D   +  + + S G  PD YT+S 
Sbjct: 422 DEACSLFDGLEYRGIRPNSVT-FNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSP 480

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            I   CK      G   +  +L+    P  V +T +I                     + 
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD +TY T +   C +G +D+A+ +  +MK      + + Y ++I G       + A 
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAV 600

Query: 176 RLFIEMMDQGVQPNVVTFNVIM----------------DELCKNGKMDEASSLLDLMIQH 219
            +   M      PN  TF +++                  + K  ++ +   L +LM ++
Sbjct: 601 TILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKN 660

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            V   A TY ++L+GF    R++    L   M+ 
Sbjct: 661 SVPSSARTYLSILEGFSEERRLDEVTSLVSLMKE 694



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E L   D ML+    P  V+ + I++  L   ++Y     ++ ++ S G  PD+ T++ 
Sbjct: 492 QEGLFFIDEMLQKDVKPSTVN-YTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTT 550

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP--DAITYNTIIDGLCKQG 134
            +  +C  GR+                 +VVT    +K C+   DA+ YNT+IDG    G
Sbjct: 551 SVRAYCNEGRLDEA-------------ENVVT---EMKKCRTIVDAMAYNTLIDGHTSIG 594

Query: 135 FVDKAK---------------------------------------------------ELF 143
             D+A                                                    ELF
Sbjct: 595 QTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELF 654

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             MK  +V  +  TY S++ GF      +E   L   M ++ +  N   +N +++  CK 
Sbjct: 655 ELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKL 714

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
               +A +LL  MI HG  P+   Y  LL G    G+ + AKE+F S
Sbjct: 715 RMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRS 761



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 2/221 (0%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++         D  +++ K +      P+ +T  IL+    +     H  +    +
Sbjct: 582 AYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSV 641

Query: 98  LRSCFTPDVVTFTSLIK--VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++    DV     L+K       A TY +I++G  ++  +D+   L   MK++N+  N 
Sbjct: 642 WKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNE 701

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             Y +++  FC    +++A  L   M+  G  PN++ +  ++  L   G+ D A  +   
Sbjct: 702 DIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRS 761

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                   D   +  ++DGF   G  +   ++   +E M C
Sbjct: 762 SRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKC 802



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +++ +  P    ++  +L   ++ +  D V SL   +    L  +   ++ L+NCFCK+ 
Sbjct: 656 LMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLR 715

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
             S  + +L  ++   F P++              I Y  ++ GL  +G  D+AKE+F  
Sbjct: 716 MYSDAWALLCSMIGHGFLPNL--------------IFYQYLLSGLTAEGQADRAKEIFRS 761

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDEL 200
            + K    + + +  +I GF      +    + I M++Q   +P+  T+ ++ +EL
Sbjct: 762 SRWKEYNTDEIVWKVIIDGFIRKGHADMCHDM-ISMLEQMKCKPSDETYAMLTEEL 816



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 110 TSLIKVCKPDAI-----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           TSL+ + K + +      YN +++  CK      A  L   M      PN++ Y  ++ G
Sbjct: 686 TSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSG 745

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
                  + AK +F     +    + + + VI+D   + G  D    ++ ++ Q   +P 
Sbjct: 746 LTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPS 805

Query: 225 AFTYNTLLD 233
             TY  L +
Sbjct: 806 DETYAMLTE 814


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 22/246 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++N +L CL K +  +  L +F+ +    + P++ T++ILI+  C+ G+++   
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAAL 179

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   + R+   P+V+T   +I                     KVC P+A+T++++IDGL
Sbjct: 180 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 239

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G VD A  L+ KM D    P  + YTS+IR F       +  +++ EM+  G  P++
Sbjct: 240 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 299

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
              N  MD + K G+ ++  +L   +  HG  PDA +Y+ L+ G    G  N   ELF +
Sbjct: 300 TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYA 359

Query: 251 MESMGC 256
           M+  GC
Sbjct: 360 MKEQGC 365



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++  N  + C+ K    +   +LF+ +N+ G  PD  ++SILI+   K G  +  + +
Sbjct: 297 PDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYEL 356

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                          +    + C  D   YN +IDG CK G V+KA +L  +MK K   P
Sbjct: 357 F--------------YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPP 402

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY SVI G    +  +EA  LF E    G++ NVV ++ ++D   K G++DEA  ++
Sbjct: 403 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIM 462

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + ++Q G+ P+ +T+N LLD       +N A   F SM+ + C
Sbjct: 463 EELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKC 505



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M ++   PP V ++  ++  LAK    D    LF+   S G+  ++  +S 
Sbjct: 386 NKAYQLLEEM-KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GR+   ++++  +++   TP+V T              +N ++D L K   +
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT--------------WNCLLDALVKAEEI 490

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F  MKD    PN +TY+ +I G C    +N+A   + EM   G++PN +T+  +
Sbjct: 491 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 550

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G + EAS L      +G  PD+ +YN +++G     +   A  LF      GC
Sbjct: 551 ISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 610



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P   S++I++  L K    +    LF  +   G   D + ++ +I+ FCK G+
Sbjct: 325 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V+  + +L  +               +K   P  +TY ++IDGL K   +D+A  LF + 
Sbjct: 385 VNKAYQLLEEMK--------------VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 430

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K   +K NVV Y+S+I GF      +EA  +  E+M +G+ PNV T+N ++D L K  ++
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA      M      P+  TY+ L++G C   + N A   +  M+ +G
Sbjct: 491 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG 539



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL I D M R    P  V + NIM+  L K +  +   S+F+ ++     P+  T S 
Sbjct: 176 NAALEIRDDMERAGLFPN-VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 234

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+   K GRV   + +  ++L     P  + +TSLI+                      
Sbjct: 235 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 294

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD    NT +D + K G  +K + LF ++      P+  +Y+ +I G   A   NE  
Sbjct: 295 CSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETY 354

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M +QG   +   +N ++D  CK+GK+++A  LL+ M   G  P   TY +++DG 
Sbjct: 355 ELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 414

Query: 236 CLTGRVNHAKELFVSMESMG 255
               R++ A  LF   +S G
Sbjct: 415 AKIDRLDEAYMLFEEAKSNG 434



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 1/139 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P A  YNT+I G    G  D+A  L  + K K   P+V+ Y  ++          EA R+
Sbjct: 88  PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 147

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM    V PNV T+N+++D LC+ GK++ A  + D M + G+ P+  T N ++D  C 
Sbjct: 148 FEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK 206

Query: 238 TGRVNHAKELFVSMESMGC 256
             ++  A  +F  M+   C
Sbjct: 207 AQKLEEACSIFEGMDDKVC 225



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P  V ++N +L  L K +  +  L  F+ +      P+  T+SI
Sbjct: 456 DEAYLIMEELMQKGLTPN-VYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 514

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C++ + +  FV    + +                 KP+ ITY T+I GL K G +
Sbjct: 515 LINGLCRVRKFNKAFVFWQEMQKLGL--------------KPNTITYTTMISGLAKAGNI 560

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF + K     P+  +Y ++I G   AN   +A  LF E   +G   +  T  V+
Sbjct: 561 LEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVL 620

Query: 197 MDELCKNGKMDEAS 210
           +D L K   +++A+
Sbjct: 621 LDALHKAECLEQAA 634



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK   +D+A ELF +++     P    Y ++I G+  A  ++EA  L      +G  P+
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           V+ +N I+  L K  +++EA  + + M +  V P+  TYN L+D  C  G++N A E+  
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRD 183

Query: 250 SMESMG 255
            ME  G
Sbjct: 184 DMERAG 189


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L  LA+++    V  LF++L +    P+++T +I+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  R+      PDVVTF SLI                       CK D +TYN +I+  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G ++ A   F  MK + V  NVVT+++ +  FC      EA +LF +M  +G+  N  
Sbjct: 270 KFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  LLD M++ GV  +  TY  L+DG C   +V  A+++   M
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 252 ESMG 255
           E  G
Sbjct: 390 EKAG 393



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M  M    P V +FN ++    K    D V  L + +  +G   D+ T++ L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INCFCK GR+   +     + R     +VVTF+              T +D  CK+G V 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFS--------------TFVDAFCKEGLVR 310

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M+ + +  N  TYT +I G C A   ++A  L  EM+ QGV  NVVT+ V++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK  K+ EA  +L +M + GVR +   Y TL+ G  +      A  L   M++ G
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKG 428



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S +  ++  L      D   SL  +++ +GL P+   ++ +++   K G+V     +L 
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +IL S F P+V              ITY  +IDGLCK G +D+A   F KM+D  + PNV
Sbjct: 493 KILDSGFQPNV--------------ITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             YT+++ G C     NEA +LF EM+ +G+  + V +  ++D   K G + +A +L   
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI  G++ D F Y   + GFC    +  A+E+F  M   G
Sbjct: 599 MIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 21/229 (9%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K    D  + L   +   G+  ++ T+++L++  CK  +V+    VL  + ++    + +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 108 TFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            +T+LI                     K  + D   Y  +I GLC    +D+AK L  KM
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +  ++PN + YT+++     +    EA  +  +++D G QPNV+T+  ++D LCK G +
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSI 519

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           DEA S  + M   G+ P+   Y  L+DG C  G +N A +LF  M   G
Sbjct: 520 DEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A   +T++  L  +G +D A     ++++  V PN  T   ++            +RLF 
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLF- 180

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
              +Q   PNV TFN+++D LCK G++ EA SL   M + G  PD  T+N+L+DG+   G
Sbjct: 181 ---EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 240 RVNHAKELFVSMESMGC 256
            ++  ++L   M   GC
Sbjct: 238 ELDEVEQLVEEMRRSGC 254



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+  F+ M R     P V ++  ++  L KN   +  + LF  +   G+  D   ++ 
Sbjct: 520 DEAISHFNKM-RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ + K G +   F +  +++ S    D+  +T  I               G C    +
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFIS--------------GFCNLNMM 624

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            +A+E+F +M    + P+   Y  +I  +    +  EA  L  EM
Sbjct: 625 PEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 22/246 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++N +L CL K +  +  L +F+ +    + P++ T++ILI+  C+ G+++   
Sbjct: 366 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAAL 424

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   + R+   P+V+T   +I                     KVC P+A+T++++IDGL
Sbjct: 425 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 484

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G VD A  L+ KM D    P  + YTS+IR F       +  +++ EM+  G  P++
Sbjct: 485 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 544

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
              N  MD + K G+ ++  +L   +  HG  PDA +Y+ L+ G    G  N   ELF +
Sbjct: 545 TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYA 604

Query: 251 MESMGC 256
           M+  GC
Sbjct: 605 MKEQGC 610



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++  N  + C+ K    +   +LF+ +N+ G  PD  ++SILI+   K G  +  + +
Sbjct: 542 PDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYEL 601

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                          +    + C  D   YN +IDG CK G V+KA +L  +MK K   P
Sbjct: 602 F--------------YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPP 647

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY SVI G    +  +EA  LF E    G++ NVV ++ ++D   K G++DEA  ++
Sbjct: 648 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIM 707

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + ++Q G+ P+ +T+N LLD       +N A   F SM+ + C
Sbjct: 708 EELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKC 750



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M ++   PP V ++  ++  LAK    D    LF+   S G+  ++  +S 
Sbjct: 631 NKAYQLLEEM-KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GR+   ++++  +++   TP+V T              +N ++D L K   +
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT--------------WNCLLDALVKAEEI 735

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F  MKD    PN +TY+ +I G C    +N+A   + EM   G++PN +T+  +
Sbjct: 736 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 795

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G + EAS L      +G  PD+ +YN +++G     +   A  LF      GC
Sbjct: 796 ISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 855



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +  H   P   S++I++  L K    +    LF  +   G   D + ++ +I+ FCK G+
Sbjct: 570 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V+  + +L  +               +K   P  +TY ++IDGL K   +D+A  LF + 
Sbjct: 630 VNKAYQLLEEMK--------------VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 675

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K   +K NVV Y+S+I GF      +EA  +  E+M +G+ PNV T+N ++D L K  ++
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA      M      P+  TY+ L++G C   + N A   +  M+ +G
Sbjct: 736 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG 784



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL I D M R    P  V + NIM+  L K +  +   S+F+ ++     P+  T S 
Sbjct: 421 NAALEIRDDMERAGLFPN-VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 479

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI+   K GRV   + +  ++L     P  + +TSLI+                      
Sbjct: 480 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 539

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C PD    NT +D + K G  +K + LF ++      P+  +Y+ +I G   A   NE  
Sbjct: 540 CSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETY 599

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  M +QG   +   +N ++D  CK+GK+++A  LL+ M   G  P   TY +++DG 
Sbjct: 600 ELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 659

Query: 236 CLTGRVNHAKELFVSMESMG 255
               R++ A  LF   +S G
Sbjct: 660 AKIDRLDEAYMLFEEAKSNG 679



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 20/254 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + ++ H   P   ++  M+G L K    D  + LF++L      P  Y ++ +I  + 
Sbjct: 287 FFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYG 346

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVT--------------------FTSLIKVCKPDAIT 122
             G+    + +L R       P V+                     F  + +   P+  T
Sbjct: 347 SAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPT 406

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN +ID LC++G ++ A E+   M+   + PNV+T   +I   C A    EA  +F  M 
Sbjct: 407 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 466

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           D+   PN VTF+ ++D L K G++D+A SL + M+  G  P A  Y +L+  F   GR  
Sbjct: 467 DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 526

Query: 243 HAKELFVSMESMGC 256
              +++  M   GC
Sbjct: 527 DGHKIYKEMVHTGC 540



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++ I++G L++ +  D +L LF ++   G   +++  + LI  F + GRV     +
Sbjct: 193 PAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSL 252

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCK 132
           L  +  +    D+V +   I    K  K                 PD +TY ++I  LCK
Sbjct: 253 LDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +D+A ELF +++     P    Y ++I G+  A  ++EA  L      +G  P+V+ 
Sbjct: 313 ANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIA 372

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+  L K  +++EA  + + M +  V P+  TYN L+D  C  G++N A E+   ME
Sbjct: 373 YNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDME 431

Query: 253 SMG 255
             G
Sbjct: 432 RAG 434



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 21/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A+  F +  +         ++N +L  +A+N  +D +  + + ++ +G  P       
Sbjct: 106 NTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIE 165

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAIT---------- 122
           L+    K  ++   F ++  + +  F P    +T LI    +V +PD +           
Sbjct: 166 LVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELG 225

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  + T+I    ++G VD A  L  +MK  ++  ++V Y   I  F  A   + + 
Sbjct: 226 YEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSW 285

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM   G+ P+ VT+  ++  LCK  ++DEA  L + + Q+   P A+ YNT++ G+
Sbjct: 286 KFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGY 345

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G+ + A  L    ++ G
Sbjct: 346 GSAGKFDEAYGLLERQKAKG 365



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P  V ++N +L  L K +  +  L  F+ +      P+  T+SI
Sbjct: 701 DEAYLIMEELMQKGLTPN-VYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 759

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C++ + +  FV    + +                 KP+ ITY T+I GL K G +
Sbjct: 760 LINGLCRVRKFNKAFVFWQEMQKLGL--------------KPNTITYTTMISGLAKAGNI 805

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF + K     P+  +Y ++I G   AN   +A  LF E   +G   +  T  V+
Sbjct: 806 LEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVL 865

Query: 197 MDELCKNGKMDEAS 210
           +D L K   +++A+
Sbjct: 866 LDALHKAECLEQAA 879


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 17/233 (7%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N +L  L + +  + ++ +F+R+ S    P+  ++  L+   C+ G++      +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 100 SCFTPDVVTFTSLI-KVCK----------------PDAITYNTIIDGLCKQGFVDKAKEL 142
               PDV T+  +I  +CK                PD +TYNT++ GLCK G V +A  L
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSL 123

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M+   + P+ VTYT++I  FC    +  A  L   M  +   P V ++  I++ LCK
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           N K+D+A  L + M   G +PD  TYNTL+ G C+  R++ AK+L   M   G
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 128/280 (45%), Gaps = 62/280 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++  L KN+  D    LF+ +   G  PD  T++ LI+  C   R+     +
Sbjct: 169 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC- 131
           L  ++ + F PD +TFT+LI                     + C PD +T+  ++  LC 
Sbjct: 229 LTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 288

Query: 132 ---------------------------------KQGFVDKAKELFLKMKDKNVKPNVVTY 158
                                            ++GF D+A  L  KM  + V PNVVTY
Sbjct: 289 LRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGF-DRAARLLQKMARRGVPPNVVTY 347

Query: 159 TSVIRGFCYANDWNE---AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           T+  +G     DW E   A R F  M++QG++P++V +NV++D  CK  ++D A  ++  
Sbjct: 348 TAFFKGL---GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRY 404

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M Q G+ P+  TYNTL+   C  G+V    EL  +M S G
Sbjct: 405 MDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRG 444



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 25/244 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++  L +    D   S    +    L PD++T++++I+  CK  R+S     
Sbjct: 33  PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 90

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
                 +   PDVVT+ +L+  +CK                    P  +TY T+ID  CK
Sbjct: 91  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 148

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               + A  L   M  +   P V +Y S+I G C     ++A +LF EM   G +P+ VT
Sbjct: 149 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVT 208

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC   ++ EA  LL +M+++G +PD  T+  L++G C T R+  A  LF  M 
Sbjct: 209 YNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMA 268

Query: 253 SMGC 256
             GC
Sbjct: 269 KQGC 272



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 25/232 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L K +     +  F+ +      PD+ T++ L+   CK GRV+    +
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 123

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            G +  +  TP  VT+T+LI V                     C P   +Y +II+GLCK
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A +LF +MK    KP+ VTY ++I G C     +EAK L   M++ G QP+ +T
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT 243

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           F  +++ LC   ++ EA  L   M + G  PD  T+  L+   C+  ++  A
Sbjct: 244 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPA 295



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +T N ++D L +    ++   +F ++  ++ KPN ++Y  +++  C     ++A     E
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  + + P+V T+NV++D LCK  ++  A    + M +    PD  TYNTLL G C  GR
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGR 116

Query: 241 VNHAKELFVSMESMG 255
           V  A  LF SME  G
Sbjct: 117 VAQACSLFGSMEGAG 131



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 56/242 (23%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC----------- 82
           P   +F  ++  L           LF+ +   G  PDL TH++L++  C           
Sbjct: 239 PDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSV 298

Query: 83  -------------------KMGRVSHGFVVLGRIL----RSCFTPDVVTFTSLIKV---- 115
                              ++GR   GF    R+L    R    P+VVT+T+  K     
Sbjct: 299 VRNYPACPEAVILYTPIFRELGR-RRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDW 357

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                             +PD + YN ++DG CK   +D A+++   M    + PN+VTY
Sbjct: 358 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTY 417

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            +++   C          L   M+ +G QP+V T++ ++  L   G+ D A S L+L + 
Sbjct: 418 NTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMS 477

Query: 219 HG 220
            G
Sbjct: 478 QG 479


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 25/244 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   + N +L  LA+++    V  LF++L +    P+++T +I+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +  R+      PDVVTF SLI                       CK D +TYN +I+  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G ++ A   F  MK + V  NVVT+++ +  FC      EA +LF +M  +G+  N  
Sbjct: 270 KFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D+A  LLD M++ GV  +  TY  L+DG C   +V  A+++   M
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 252 ESMG 255
           E  G
Sbjct: 390 EKAG 393



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M  M    P V +FN ++    K    D V  L + +  +G   D+ T++ L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INCFCK GR+   +     + R     +VVTF+              T +D  CK+G V 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFS--------------TFVDAFCKEGLVR 310

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +LF +M+ + +  N  TYT +I G C A   ++A  L  EM+ QGV  NVVT+ V++
Sbjct: 311 EAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLV 370

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LCK  K+ EA  +L +M + GVR +   Y TL+ G  +      A  L   M++ G
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKG 428



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +S +  ++  L      D   SL  +++ +GL P+   ++ +++   K G+V     +L 
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +IL S F P+V              ITY  +IDGLCK G +D+A   F KM+D  + PNV
Sbjct: 493 KILDSGFQPNV--------------ITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             YT+++ G C     NEA +LF EM+ +G+  + V +  ++D   K G + +A +L   
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           MI  G++ D F Y   + GFC    +  A+E+F  M   G
Sbjct: 599 MIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 21/229 (9%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K    D  + L   +   G+  ++ T+++L++  CK  +V+    VL  + ++    + +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 108 TFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            +T+LI                     K  + D   Y  +I GLC    +D+AK L  KM
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +  ++PN + YT+++     +    EA  +  +++D G QPNV+T+  ++D LCK G +
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSI 519

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           DEA S  + M   G+ P+   Y  L+DG C  G +N A +LF  M   G
Sbjct: 520 DEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A   +T++  L  +G +D A     ++++  V PN  T   ++            +RLF 
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLF- 180

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
              +Q   PNV TFN+++D LCK G++ EA SL   M + G  PD  T+N+L+DG+   G
Sbjct: 181 ---EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 240 RVNHAKELFVSMESMGC 256
            ++  ++L   M   GC
Sbjct: 238 ELDEVEQLVEEMRRSGC 254



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+  F+ M R     P V ++  ++  L KN   +  + LF  +   G+  D   ++ 
Sbjct: 520 DEAISHFNKM-RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++ + K G +   F +  +++ S    D+  +T  I               G C    +
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFIS--------------GFCNLNMM 624

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            +A+E+F +M    + P+   Y  +I  +    +  EA  L  EM
Sbjct: 625 PEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++  L ++   +      K +   GL PD +T+  LIN  CK  R +    +L  +
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 340

Query: 98  LRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLCKQGFV 136
             +   P+VV + +LI             K+ K        P+ ITY+ ++ GLCK G +
Sbjct: 341 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 400

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L  +M   + +P+ +TY  +I G    +   +A RL  EM + G+ PNV T++++
Sbjct: 401 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIM 460

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LC++G+ ++AS LL+ M   G++P+AF Y  L+ G+C  G V+ A E+F  M
Sbjct: 461 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 515



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+R     P +   N +L  L +      +  + + +   G+ PD+YT+S LI  +CK+ 
Sbjct: 199 MMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 258

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
                  VL  +       + VT+  LI  +C+                    PD  TY 
Sbjct: 259 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 318

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK    ++AK L  +M    +KPNVV Y ++I GF    + +EA ++  EM+  
Sbjct: 319 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 378

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           GVQPN +T++ ++  LCK G+MD AS LL  M++   RPD  TYN +++G         A
Sbjct: 379 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 438

Query: 245 KELFVSMESMG 255
             L   ME+ G
Sbjct: 439 FRLLSEMENAG 449



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M      P  V   N++ G + +  + D    + K + + G+ P+  T+  
Sbjct: 331 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 389

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L+   CKMG++    ++L +++R                 +PD ITYN II+G  +    
Sbjct: 390 LVRGLCKMGQMDRASLLLKQMVRDSH--------------RPDTITYNLIIEGHFRHHSK 435

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L  +M++  + PNV TY+ +I G C + +  +A  L  EM  +G++PN   +  +
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G +  A  + D M +  V PD + YN+L+ G    GRV  + + F  M+  G
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 115/260 (44%), Gaps = 55/260 (21%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K+   + V S FK +   G+  D   + ILI+     G +   F VL  I ++   PDV 
Sbjct: 606 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 665

Query: 108 TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            ++SLI  +CK                    P+ + YN +IDGLCK G +  A+ +F  +
Sbjct: 666 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----------------- 189
             K + PN VTYTS+I G C   D + A  L+ EM+  G+ P+                 
Sbjct: 726 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 785

Query: 190 -----------------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
                            + +FN ++D  CK GKM E   LL +++  G+ P+A T   ++
Sbjct: 786 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 845

Query: 233 DGFCLTGRVNHAKELFVSME 252
            G    G+++    +FV ++
Sbjct: 846 SGLSEAGKLSEVHTIFVELQ 865



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M +++   P +  +N ++  L+K    +     F ++   GL P+ +T+S LI+ +
Sbjct: 511 IFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-KPDAIT------------------ 122
            K G +     ++ R+L +   P+ V +  L++   K D I                   
Sbjct: 570 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 629

Query: 123 --YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             Y  +I  L   G ++ A  +   ++     P+V  Y+S+I G C   D  +A  +  E
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +GV PN+V +N ++D LCK+G +  A ++ + ++  G+ P+  TY +L+DG C  G 
Sbjct: 690 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 749

Query: 241 VNHAKELFVSMESMG 255
           +++A  L+  M + G
Sbjct: 750 ISNAFYLYNEMLATG 764



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++    ++        L   + + G+ P++YT+SI+I+  C+ G       +
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +                K  KP+A  Y  +I G C++G V  A E+F KM   NV P
Sbjct: 477 LEEMT--------------TKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 522

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++  Y S+I G        E+ + F +M ++G+ PN  T++ ++    KNG ++ A  L+
Sbjct: 523 DLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLV 582

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G++P+   Y  LL+ +  +  +      F SM   G
Sbjct: 583 QRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 624



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 40/229 (17%)

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---SLIKVCK 117
           +L  +   PD + H  +  C   +  +++G ++  +++R+  +P VV  +   +L     
Sbjct: 114 QLAPSAPAPDAFAHLAMSLCAGSLFNLANGLLI--KMIRAYPSPPVVLASIHRALSDSGH 171

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK---------------------------- 149
                 + ++D   K G V  A E+ L M+D+                            
Sbjct: 172 RSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKV 231

Query: 150 -------NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
                   + P+V TY+++I  +C   +++ AK++ +EM ++G   N VT+NV++  LC+
Sbjct: 232 REFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCR 291

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +G ++EA      M  +G+ PD FTY  L++G C + R N AK L   M
Sbjct: 292 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 340



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 41/282 (14%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           T    +A  I D M +    P  V  +N ++  L K+       ++F  + + GL P+  
Sbjct: 677 TADREKAFGILDEMSKKGVDPNIVC-YNALIDGLCKSGDISYARNVFNSILAKGLVPNCV 735

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA------------ 120
           T++ LI+  CK+G +S+ F +   +L +  TPD   ++ L   C                
Sbjct: 736 TYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795

Query: 121 --------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                    ++N ++DG CK+G + +  +L   +  + + PN +T  ++I G   A   +
Sbjct: 796 FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLS 855

Query: 173 EAKRLFIE-------------------MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           E   +F+E                   M++QG  P  V  ++I D  CK G +D+A  L 
Sbjct: 856 EVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDH-CKEGNLDKALMLR 914

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D+++         +Y  ++D  C  G+++ A  L   M+  G
Sbjct: 915 DVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 956



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 7/202 (3%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I +  LR H S   +SSFN ++    K       L L   +   GL P+  T   +I+  
Sbjct: 792 IEEMFLRGHAS---ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGL 848

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSL----IKVCKPDAITYNTIIDGLCKQGFVD 137
            + G++S    +   + +         F+SL    I   K      + +I   CK+G +D
Sbjct: 849 SEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLD 908

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  L   +  K+      +Y +++   C     +EA  L  EM  +G+ P+     +++
Sbjct: 909 KALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILL 968

Query: 198 DELCKNGKMDEASSLLDLMIQH 219
             L  +G + E +++LD M+ H
Sbjct: 969 TNLHTSGYIQEHNTVLDNMLCH 990


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 137/253 (54%), Gaps = 22/253 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKM 84
           +++ H   P V S N  L  L + +  D  L+ ++ +     + P++YT +++I  +C +
Sbjct: 179 LMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCML 238

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITY 123
           G V  GF +L +++    +P+VV+F +LI             KV         +P+ +T+
Sbjct: 239 GEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTF 298

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT+I+G CK+  + +A  +F +MK  NV P+VVTY +++ G+    D     R++ EMM 
Sbjct: 299 NTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMR 358

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
            G++ +++T+N ++  LCK+GK  +A+  +  + +  + P+A T++ L+ G C+      
Sbjct: 359 NGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSER 418

Query: 244 AKELFVSMESMGC 256
           A  ++ SM   GC
Sbjct: 419 AFLIYRSMVRSGC 431



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++        +   L +   +   G+ P++ T + LIN FCK  ++     V
Sbjct: 258 PNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRV 317

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +  +   P VVT+ +L+                        K D +TYN +I GLCK
Sbjct: 318 FNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCK 377

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   KA     ++  +N+ PN  T++++I G C  N+   A  ++  M+  G  PN  T
Sbjct: 378 DGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPNGQT 437

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F +++   CKN   D A  +L  M+   + PD  T + L DG C  G+   A  L   ME
Sbjct: 438 FQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGKNQLALALCSEME 497



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 21/214 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    K +       +F  +    + P + T++ L+N + ++G    G  V
Sbjct: 293 PNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRV 352

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
              ++R+    D++T+ +LI  +CK                    P+A T++ +I G C 
Sbjct: 353 YEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCV 412

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +   ++A  ++  M      PN  T+  +I  FC   D++ A ++  +M+ + + P++ T
Sbjct: 413 RNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLST 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            + + D LC+ GK   A +L   M    + PD F
Sbjct: 473 MSELCDGLCRCGKNQLALALCSEMEVRRLLPDGF 506


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  I D M R+    P   ++  ++  + K    +    LF ++   GL P+  T++ LI
Sbjct: 227 ARRILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 285

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           + +C  G +   F     +++    P V T+  L+                     K   
Sbjct: 286 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 345

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDAITYN +I+G  + G   +A +L  +M  K ++P  VTYTS+I      N   EA  L
Sbjct: 346 PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 405

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F +++DQGV P+V+ FN ++D  C NG ++ A  LL  M +  V PD  T+NTL+ G C 
Sbjct: 406 FEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 465

Query: 238 TGRVNHAKELFVSMESMG 255
            G+V  A+ L   M+  G
Sbjct: 466 EGKVEEARMLLDEMKXRG 483



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P VS++N+++  L           + K +   G+ PD  T++ILIN + + G     F +
Sbjct: 311 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDL 370

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +L     P  VT+TSLI V                       PD I +N +IDG C 
Sbjct: 371 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCA 430

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V++A  L  +M  K+V P+ VT+ ++++G C      EA+ L  EM  +G++P+ ++
Sbjct: 431 NGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHIS 490

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    + G + +A  + D M+  G  P   TYN L+   C     + A+EL   M 
Sbjct: 491 YNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMV 550

Query: 253 SMG 255
           + G
Sbjct: 551 NKG 553



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F+++ G L K + +         +   G  P++ +++ +I+ +   G +     +L  + 
Sbjct: 182 FDLLEGKLKKAREF------IGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 235

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                PD  T+ SLI               G+CK+G +++A  LF KM +  + PN VTY
Sbjct: 236 VKGIEPDSYTYGSLIS--------------GMCKEGRLEEASGLFDKMVEIGLVPNAVTY 281

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I G+C   D   A     EM+ +G+ P+V T+N+++  L   G+M EA  ++  M +
Sbjct: 282 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 341

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+ PDA TYN L++G+   G    A +L   M S G
Sbjct: 342 KGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG 378



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++    +    +    L   +   G+ PD  +++ LI+ + + G +   F 
Sbjct: 450 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFX 509

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L   F P ++T+ +LIK               LCK    D A+EL  +M +K + 
Sbjct: 510 VRDEMLSIGFNPTLLTYNALIKC--------------LCKNQEGDLAEELLKEMVNKGIS 555

Query: 153 PNVVTYTSVIRGF 165
           P+  TY S+I G 
Sbjct: 556 PDDSTYLSLIEGM 568


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 15/216 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N  L  L K+   D  + LF+ L  +    D +T +ILI   C  G V   F +LG   
Sbjct: 181 YNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLG--- 237

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVT 157
                 D+ +F      C PD +TYN ++ GLC+   VD+A++L  ++  K    PNVV+
Sbjct: 238 ------DMGSFG-----CSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVS 286

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT+VI G+C  +  +EA  LF EM+  G +PNV TF+ ++D   K G M  A  +   ++
Sbjct: 287 YTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKIL 346

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            HG  P+  T  +L++G+C  G VNH  +L+  M +
Sbjct: 347 FHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNA 382



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 134/258 (51%), Gaps = 23/258 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+C+F  ++R H S     +FNI++  L      D    L   + S G  PD+ T++I
Sbjct: 195 DDAICLFRELMRSH-SCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNI 253

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC-FTPDVVTFTSLIK-VC------------------ 116
           L++  C++ +V     +L  +   C F P+VV++T++I   C                  
Sbjct: 254 LLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRS 313

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             KP+  T++ ++DG  K G +  A  +  K+      PNV+T TS+I G+C A   N  
Sbjct: 314 GTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHG 373

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             L+ EM  + +  N+ T++V++  LCK+ ++ EA +LL ++ Q  + P AF YN ++DG
Sbjct: 374 LDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDG 433

Query: 235 FCLTGRVNHAKELFVSME 252
           +C +G ++ A  +   ME
Sbjct: 434 YCKSGNIDEANAIVAEME 451



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  ++D M R     P       ++   A    +D    L      +G+  D+  ++ 
Sbjct: 125 NSAKLLYDSM-RSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNN 183

Query: 77  LINCFCKMGRVSHGFVVLGRILRS--CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
            +N   K  R+     +   ++RS  C                 DA T+N +I GLC  G
Sbjct: 184 FLNILIKHNRLDDAICLFRELMRSHSCL----------------DAFTFNILIRGLCTAG 227

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNVVTF 193
            VD+A EL   M      P++VTY  ++ G C  +  + A+ L  E+ +     PNVV++
Sbjct: 228 DVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSY 287

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++   C+  KMDEASSL   M++ G +P+ FT++ L+DGF   G +  A  +   +  
Sbjct: 288 TTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILF 347

Query: 254 MGC 256
            GC
Sbjct: 348 HGC 350



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 26/246 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++    +    D   SLF  +  +G  P+++T S L++ F K G ++    +
Sbjct: 282 PNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGM 341

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNTIIDGLCK 132
             +IL     P+V+T TSLI   C+   +                    TY+ +I  LCK
Sbjct: 342 HKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCK 401

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A+ L   +K  ++ P    Y  VI G+C + + +EA  +  E M++  +P+ +T
Sbjct: 402 SNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAE-MEEKCKPDKLT 460

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA----KELF 248
           F +++   C  G+  EA  +   M+  G  PD  T  TL      +G    A    + LF
Sbjct: 461 FTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKETLF 520

Query: 249 VSMESM 254
            + ES+
Sbjct: 521 ENQESI 526



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 15/241 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN     F +            ++N++L  L +   +++   L+  + S G  PD     
Sbjct: 88  PNLGFKFFRFTRERLSMSHSFWTYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLG 147

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L++ F    R    F V   +L       V          + D I YN  ++ L K   
Sbjct: 148 FLVSSFALADR----FDVSKELLAEAQCSGV----------QVDVIVYNNFLNILIKHNR 193

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A  LF ++   +   +  T+  +IRG C A D +EA  L  +M   G  P++VT+N+
Sbjct: 194 LDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNI 253

Query: 196 IMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++  LC+  ++D A  LL ++ ++    P+  +Y T++ G+C   +++ A  LF  M   
Sbjct: 254 LLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRS 313

Query: 255 G 255
           G
Sbjct: 314 G 314



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TYN ++  LC+ G  + AK L+  M+     P+      ++  F  A+ ++ +K L  E 
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
              GVQ +V+ +N  ++ L K+ ++D+A  L   +++     DAFT+N L+ G C  G V
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDV 229

Query: 242 NHAKELFVSMESMGC 256
           + A EL   M S GC
Sbjct: 230 DEAFELLGDMGSFGC 244


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWGLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           N  CK  ++     +   +L +   P+ VTFT+LI                     +   
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ITYNT+I GLCK+G + +A++L  +M  K +KP+ +TYT++I G C       A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 238 TGRVNHAKELFVSMESMG 255
            G V    +L   M+  G
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +J  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNX 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N+++  L ++   +      K +   GL PD +T+  LIN  CK  R +    +L  +
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 213

Query: 98  LRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLCKQGFV 136
             +   P+VV + +LI             K+ K        P+ ITY+ ++ GLCK G +
Sbjct: 214 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 273

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L  +M   + +P+ +TY  +I G    ++  +A RL  EM + G+ PNV T++++
Sbjct: 274 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIM 333

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LC++G+ ++AS LL+ M   G++P+AF Y  L+ G+C  G V+ A E+F  M
Sbjct: 334 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 388



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+R     P +   N +L  L +      +  + + +   G+ PD+YT+S LI  +CK+ 
Sbjct: 72  MMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 131

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
                  VL  +       + VT+  LI  +C+                    PD  TY 
Sbjct: 132 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 191

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK    ++AK L  +M    +KPNVV Y ++I GF    + +EA ++  EM+  
Sbjct: 192 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 251

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           GVQPN +T++ ++  LCK G+MD AS LL  M++   RPD  TYN +++G         A
Sbjct: 252 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDA 311

Query: 245 KELFVSMESMG 255
             L   ME+ G
Sbjct: 312 FRLLSEMENAG 322



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  + D M      P  V   N++ G + +  + D    + K + + G+ P+  T+  
Sbjct: 204 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 262

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L+   CKMG++    ++L +++R    PD +T+  +I+                      
Sbjct: 263 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAG 322

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TY+ +I GLC+ G  +KA +L  +M  K +KPN   Y  +I G+C   + + A 
Sbjct: 323 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 382

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M    V P++  +N ++  L K G+++E++     M + G+ P+ FTY+ L+ G+
Sbjct: 383 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G +  A++L   M   G
Sbjct: 443 LKNGDLESAEQLVQRMLDTG 462



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 55/261 (21%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K+   + V S FK +   G+  D   + ILI+     G +   F VL  I ++   PDV 
Sbjct: 479 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVH 538

Query: 108 TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            ++SLI  +CK                    P+ + YN +IDGLCK G +  A+ +F  +
Sbjct: 539 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 598

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN----------------- 189
             K + PN VTYTS+I G C   D + A  L+ EM+  G+ P+                 
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 658

Query: 190 -----------------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
                            + +FN ++D  CK GKM E   LL +++  G+ P+A T   ++
Sbjct: 659 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 718

Query: 233 DGFCLTGRVNHAKELFVSMES 253
            G    G+++    +FV ++ 
Sbjct: 719 SGLSEAGKLSEVHTIFVELQQ 739



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 22/255 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M +++   P +  +N ++  L+K    +     F ++   GL P+ +T+S LI+ +
Sbjct: 384 IFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAIT------------------ 122
            K G +     ++ R+L +   P+ V +  L++   K D I                   
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502

Query: 123 --YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
             Y  +I  L   G ++ A  +  +++     P+V  Y+S+I G C   D  +A  +  E
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M  +GV PN+V +N ++D LCK+G +  A ++ + ++  G+ P+  TY +L+DG C  G 
Sbjct: 563 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 622

Query: 241 VNHAKELFVSMESMG 255
           +++A  L+  M + G
Sbjct: 623 ISNAFYLYNEMLATG 637



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A  +   M+R    P  ++ +N+++    ++ +      L   + + G+ P++YT+SI
Sbjct: 274 DRASLLLKQMVRDSHRPDTIT-YNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +I+  C+ G       +L  +                K  KP+A  Y  +I G C++G V
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMT--------------TKGLKPNAFVYAPLISGYCREGNV 378

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A E+F KM   NV P++  Y S+I G        E+ + F +M ++G+ PN  T++ +
Sbjct: 379 SLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGL 438

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +    KNG ++ A  L+  M+  G++P+   Y  LL+ +  +  +      F SM   G
Sbjct: 439 IHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 497



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 41/282 (14%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           T    +A  I D M +    P  V  +N ++  L K+       ++F  + + GL P+  
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVC-YNALIDGLCKSGDISYARNVFNSILAKGLVPNCV 608

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA------------ 120
           T++ LI+  CK+G +S+ F +   +L +  TPD   ++ L   C                
Sbjct: 609 TYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668

Query: 121 --------ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                    ++N ++DG CK+G + +  +L   +  + + PN +T  ++I G   A   +
Sbjct: 669 FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLS 728

Query: 173 EAKRLFIE-------------------MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           E   +F+E                   M++QG  P  V  ++I D  CK G +D+A  L 
Sbjct: 729 EVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDH-CKEGNLDKALMLR 787

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D+++         +Y  ++D  C  G+++ A  L   M+  G
Sbjct: 788 DVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 40/210 (19%)

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFT---SLIKVCKPDAITYNTIIDGLCKQGFV 136
           C   +  +++G ++  +++R+  +P VV  +   +L           + ++D   K G V
Sbjct: 6   CAGSLFNLANGLLI--KMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRV 63

Query: 137 DKAKELFLKMKDK-----------------------------------NVKPNVVTYTSV 161
             A E+ L M+D+                                    + P+V TY+++
Sbjct: 64  QDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTL 123

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I  +C   +++ AK++ +EM ++G   N VT+NV++  LC++G ++EA      M  +G+
Sbjct: 124 IEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 183

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            PD FTY  L++G C + R N AK L   M
Sbjct: 184 VPDGFTYGALINGLCKSRRSNEAKALLDEM 213



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A  + + M D+G+ P++   N ++ +L +   M     + + M+  G+ PD +TY+TL
Sbjct: 64  QDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTL 123

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           ++ +C     + AK++ V M   GC
Sbjct: 124 IEAYCKVREFDTAKKVLVEMRERGC 148


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 125/250 (50%), Gaps = 25/250 (10%)

Query: 22   IFDYMLRMHPSPPPVSSFNIM-LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
            +FD M  +    P  SS+ +M +GC    K  +    L   +   G  PD  T ++++  
Sbjct: 805  VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR-GFIPDNATCTLILTA 862

Query: 81   FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPD 119
             C+ G V+       +++   F P+++ FTSLI  +C                    KP+
Sbjct: 863  LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPN 922

Query: 120  AITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
              T+  +IDGLCK+G+ +KA  LFLK+ +    KPNV TYTS+I G+C  +  N A+ LF
Sbjct: 923  VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLF 982

Query: 179  IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
              M +QG+ PNV T+  +++  CK G    A  L++LM   G  P+ +TYN  +D  C  
Sbjct: 983  SRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKK 1042

Query: 239  GRVNHAKELF 248
             R   A EL 
Sbjct: 1043 SRAPEAYELL 1052



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 22/244 (9%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P  ++  ++L  L +N   +  +  F+++   G  P+L   + LI+  CK G +   F +
Sbjct: 851  PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 910

Query: 94   LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
            L  ++R+ + P+V T T+LI  +CK                     P+  TY ++I G C
Sbjct: 911  LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 970

Query: 132  KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            K+  +++A+ LF +MK++ + PNV TYT++I G C A  +  A  L   M D+G  PN+ 
Sbjct: 971  KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 1030

Query: 192  TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            T+N  +D LCK  +  EA  LL+     G+  D  TY  L+   C    +N A   F  M
Sbjct: 1031 TYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM 1090

Query: 252  ESMG 255
               G
Sbjct: 1091 NKTG 1094



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 21/259 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A  +F  ++R     P V ++  M+G   K    +    LF R+   GLFP++ T++ L
Sbjct: 941  KAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 1000

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
            IN  CK G     + ++  +    F P++ T+ + I  +CK                   
Sbjct: 1001 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGL 1060

Query: 118  -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
              D +TY  +I   CKQ  +++A   F +M     + ++     +I  FC      E++R
Sbjct: 1061 EADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESER 1120

Query: 177  LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            LF  ++  G+ P   T+  ++   CK G +D A      M +HG  PD+FTY +L+ G C
Sbjct: 1121 LFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 1180

Query: 237  LTGRVNHAKELFVSMESMG 255
                V+ A +L+ +M   G
Sbjct: 1181 KKSMVDEACKLYEAMIDRG 1199



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           + + GL P     SI +NC  ++       V LG I  +    D ++   ++    PD+ 
Sbjct: 774 MQNQGLTPS----SITMNCVLEIA------VELGLIEYAENVFDEMSVRGVV----PDSS 819

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +Y  ++ G  + G + +A      M  +   P+  T T ++   C     N A   F +M
Sbjct: 820 SYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKM 879

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D G +PN++ F  ++D LCK G + +A  +L+ M+++G +P+ +T+  L+DG C  G  
Sbjct: 880 IDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWT 939

Query: 242 NHAKELFVSM 251
             A  LF+ +
Sbjct: 940 EKAFRLFLKL 949



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 19/215 (8%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++ I++    K    +  L+ F R+N TG   D+  ++ILI  FC+  ++     +   +
Sbjct: 1066 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 1125

Query: 98   LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +     P   T+TS+I                 CK+G +D A + F  MK     P+  T
Sbjct: 1126 VSLGLIPTKETYTSMISC--------------YCKEGDIDLALKYFHNMKRHGCVPDSFT 1171

Query: 158  YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD-LM 216
            Y S+I G C  +  +EA +L+  M+D+G+ P  VT   +  E CK      A  LL+ L 
Sbjct: 1172 YGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD 1231

Query: 217  IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             +  +R    T  TL+   C   +V  A   F  +
Sbjct: 1232 KKLWIR----TVRTLVRKLCSEKKVGVAALFFQKL 1262



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P +IT N +++   + G ++ A+ +F +M  + V P+  +Y  ++ G        EA R 
Sbjct: 781 PSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRW 840

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G  P+  T  +I+  LC+NG ++ A      MI  G +P+   + +L+DG C 
Sbjct: 841 LTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCK 900

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A E+   M   G
Sbjct: 901 KGSIKQAFEMLEEMVRNG 918



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 25/183 (13%)

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           TH   I     +   S   V L      CF    V F       +     Y    D L  
Sbjct: 691 THEQAITVVASLASESGSMVAL------CFFYWAVGFEKFRHFMR----LYLVTADSLLA 740

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + KA E+   M               +R F      NEA  + ++M +QG+ P+ +T
Sbjct: 741 NGNLQKAHEVMRCM---------------LRNFSEIGRLNEAVGMVMDMQNQGLTPSSIT 785

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N +++   + G ++ A ++ D M   GV PD+ +Y  ++ G    G++  A      M 
Sbjct: 786 MNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMI 845

Query: 253 SMG 255
             G
Sbjct: 846 QRG 848


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P   +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI                     K   P+ +T+ T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  +M  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L+K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G+ P+  T
Sbjct: 330 EGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P  V++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GL K+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M + G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSAVS-YNTLMNGYIRLGVLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN   K  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L   M  K +KP+ +TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G+ PD  
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP A +YNTL++G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGVLDEGFRLKSAMLASG 207


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 14/237 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL +FD M R     P   S++I++  L +    +    L  ++   G  P   T+++
Sbjct: 247 RDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTV 306

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI   C  G +   F +   ++               + CKP+  TY  +IDGLC+ G +
Sbjct: 307 LIKALCDRGLIDKAFNLFDEMI--------------ARGCKPNVHTYTVLIDGLCRDGKI 352

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A  +  KM    + P+V+TY ++I G+C       A  L   M  +  +PNV TFN +
Sbjct: 353 EEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNEL 412

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           M+ LC+ GK  +A  LL  M+ +G+ PD  +YN L+DG C  G +N A +L  SM S
Sbjct: 413 MEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNS 469



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++  L      D   +LF  + + G  P+++T+++LI+  C+ G++     V
Sbjct: 299 PSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGV 358

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++++    P V+T+ +LI                     + CKP+  T+N +++GLC+
Sbjct: 359 CRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCR 418

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   KA  L  +M D  + P++V+Y  +I G C     N A +L   M    ++P+ +T
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLT 478

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           F  I++  CK GK D AS+ L LM++ G+  D  T  TL+DG C  G+   A
Sbjct: 479 FTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDA 530



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 22/220 (10%)

Query: 59  FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----- 113
           ++R+ + G    +  +  ++N  CK G      + + +IL+  F  D    TSL+     
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCR 242

Query: 114 -----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
                              C P++++Y+ +I GLC+ G +++A  L  +M +K  +P+  
Sbjct: 243 GLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTR 302

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TYT +I+  C     ++A  LF EM+ +G +PNV T+ V++D LC++GK++EA+ +   M
Sbjct: 303 TYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM 362

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ G+ P   TYN L++G+C  GRV  A EL   ME   C
Sbjct: 363 VKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRAC 402



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 127/310 (40%), Gaps = 63/310 (20%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG      P +A+ +   ML    SP  VS +N+++  L +  H +    L   +NS  L
Sbjct: 414 EGLCRVGKPYKAVHLLKRMLDNGLSPDIVS-YNVLIDGLCREGHMNVAYKLLTSMNSFDL 472

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD  T + +IN FCK G+       LG +LR   + D VT T+LI              
Sbjct: 473 EPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALF 532

Query: 114 -------------------------KVCK-----------------PDAITYNTIIDGLC 131
                                    K CK                 P  +TY T++DGL 
Sbjct: 533 ILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLI 592

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +  +  +   MK     PNV  YT +I G C      EA++L   M D GV PN V
Sbjct: 593 RSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHV 652

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA------K 245
           T+ V++     NGK+D A   +  M++ G   +   Y++LL GF L+ +          K
Sbjct: 653 TYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIK 712

Query: 246 ELFVSMESMG 255
           EL   +E +G
Sbjct: 713 ELISVVEQLG 722



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 57/296 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD M+      P V ++ +++  L ++   +    + +++   G+FP + T++ 
Sbjct: 318 DKAFNLFDEMI-ARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNA 376

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LIN +CK GRV   F +L  + +    P+V TF  L++ +C+                  
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ++YN +IDGLC++G ++ A +L   M   +++P+ +T+T++I  FC     + A 
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVAS 496

Query: 176 RLFIEMMDQGVQPNVVT-----------------------------------FNVIMDEL 200
                M+ +G+  + VT                                    NVI+D L
Sbjct: 497 AFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDML 556

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            K  K+ E  ++L  + + G+ P   TY TL+DG   +G ++ +  +   M+  GC
Sbjct: 557 SKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGC 612



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 108/247 (43%), Gaps = 59/247 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +AL I + +++M     P  S N++L  L+K       L++  ++N  GL P + T++ 
Sbjct: 528 RDALFILETLVKMRMLTTP-HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTT 586

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQG 134
           L++   + G +S  F +L                 L+K+  C P+   Y  II+GLC+ G
Sbjct: 587 LVDGLIRSGDISGSFRML----------------ELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V++A++L   M+D  V PN VTYT +++G+      + A      M+++G + N   ++
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYS 690

Query: 195 VIM----------------------------------------DELCKNGKMDEASSLLD 214
            ++                                          LCK G+ DE++ L+ 
Sbjct: 691 SLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQ 750

Query: 215 LMIQHGV 221
            +++ GV
Sbjct: 751 TILKSGV 757


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N ++  L K++ +     LF+ + + GL P+  T++ILI+  CK G +     +
Sbjct: 333 PNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCM 392

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+        V  + SLI                     K   P A +Y+ +I GLC+
Sbjct: 393 FDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCR 452

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +  A EL  +M    V  NV T+T++I GFC   + +EA RLF +M+D  V PN VT
Sbjct: 453 KGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVT 512

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FNV+++  C+ G + +A  L D M+  G+ PD +TY +L+   CLT     AKE    +E
Sbjct: 513 FNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLE 572

Query: 253 S 253
           +
Sbjct: 573 N 573



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL + D ML +H   P V+S + M+  L K  H D    L   L   G+ P+L+  + LI
Sbjct: 284 ALEMTDDMLSLH-FVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALI 342

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----PDAI------------ 121
           +  CK  R      +   +      P+ VT+  LI  +CK     DA+            
Sbjct: 343 DKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIR 402

Query: 122 ----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                YN++I+G C+     +A+ L  +M +K + P+  +Y+ +I G C   D   A  L
Sbjct: 403 VTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMEL 462

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM   GV  NV TF  ++   CK+G MDEA+ L D MI   V P+  T+N +++G+C 
Sbjct: 463 HREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCR 522

Query: 238 TGRVNHAKELFVSMESMG 255
            G V  A +L+  M   G
Sbjct: 523 VGNVRKAFQLYDQMVDRG 540



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M      P  V+ + I++  L K    D  L +F R+   G+   +Y ++ L
Sbjct: 353 EAERLFRGMANRGLEPNEVT-YAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSL 411

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------ 118
           IN +C+         +L  ++     P   +++ LI  +C+                   
Sbjct: 412 INGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGV 471

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             +  T+ T+I G CK G +D+A  LF KM D +V PN VT+  +I G+C   +  +A +
Sbjct: 472 SGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQ 531

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L+ +M+D+G+ P+  T+  ++  LC      +A   +D +  + V  ++F+  TL+ GFC
Sbjct: 532 LYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFC 591

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+     ++  M + G
Sbjct: 592 KEGRLTETYHIWDEMRARG 610



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 28/265 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG +T     E   I+D M R       + SF +++    K    + +  LF+ +   G+
Sbjct: 593 EGRLT-----ETYHIWDEM-RARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGV 646

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------- 117
            PD   H+ +I+   K   +        +++    +P+VVT+T LI  +CK         
Sbjct: 647 KPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQI 706

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      P++ TYN  +D L  +G ++KAK L   + +  +  N VT+ ++I+GFC
Sbjct: 707 LCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCL-ANTVTFNTLIKGFC 765

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A     A  L     + G  P+ ++++ I++ELCK G +++A  L + M+  G++PD  
Sbjct: 766 KAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIV 825

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
            YN L+    + G  +    ++  M
Sbjct: 826 AYNILIRWCNIHGEFDKGLGIYSDM 850



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 56/272 (20%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F  ++    K+ + D    LF ++  + + P+  T +++I  +C++G V   F +  
Sbjct: 475 VYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYD 534

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           +++    TPD  T+ SLI V                        ++ +  T++ G CK+G
Sbjct: 535 QMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEG 594

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ------- 187
            + +   ++ +M+ + VK +++++T ++      +D  +   LF EM ++GV+       
Sbjct: 595 RLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHT 654

Query: 188 ----------------------------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
                                       PNVVT+ V+++ LCK+G +  A  L + M+  
Sbjct: 655 CMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVG 714

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              P++FTYN  LD     G +  AK L  ++
Sbjct: 715 RFLPNSFTYNCFLDFLANEGELEKAKVLHATI 746



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 52/270 (19%)

Query: 22  IFDYMLRMH-PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           +FD M++   P    V +  I   C  +N   D    L  R+ S G+      +++L+  
Sbjct: 182 LFDEMVQCKFPLDEYVYTAGIRAYCEIRN--LDGARGLLTRMESKGVKGSAVPYNVLMYG 239

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI-------------- 126
            C+  RV     V   ++      D               +TY T+              
Sbjct: 240 LCRNNRVLEAVEVKNSMVERGIVAD--------------EVTYRTLVYGFCRTEELEMAL 285

Query: 127 ---------------------IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                                +DGL K+G +DKA  L   + +  + PN+    ++I   
Sbjct: 286 EMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKL 345

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C    + EA+RLF  M ++G++PN VT+ +++  LCK G MD+A  + D M + G+R   
Sbjct: 346 CKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTV 405

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + YN+L++G+C     + A+ L   M   G
Sbjct: 406 YPYNSLINGYCQHDNFHQARGLLNEMVEKG 435



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 58/287 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M+     P  V+ FN+M+    +  +      L+ ++   GL PD YT+  
Sbjct: 492 DEAARLFDKMIDSSVVPNEVT-FNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRS 550

Query: 77  LI---------------------NC--------------FCKMGRVSHGFVVLGRILRSC 101
           LI                     NC              FCK GR++  + +   +    
Sbjct: 551 LISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARG 610

Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
              D+++FT ++                     K  KPD + +  +ID   K+  + +A 
Sbjct: 611 VKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQAL 670

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
             + KM      PNVVTYT +I   C +   + A+ L  EM+     PN  T+N  +D L
Sbjct: 671 NCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFL 730

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
              G++++A  +L   I  G   +  T+NTL+ GFC  G++  A +L
Sbjct: 731 ANEGELEKAK-VLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDL 776



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 100/196 (51%), Gaps = 20/196 (10%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           M+   +K ++    L+ + ++ + G  P++ T+++LIN  CK G +S   ++   +L   
Sbjct: 656 MIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGR 715

Query: 102 FTPDVVTF--------------------TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           F P+  T+                     ++++ C  + +T+NT+I G CK G +  A +
Sbjct: 716 FLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAID 775

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L     +    P+ ++Y+++I   C   D N+A +L+ EM+ +G++P++V +N+++    
Sbjct: 776 LMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCN 835

Query: 202 KNGKMDEASSLLDLMI 217
            +G+ D+   +   M+
Sbjct: 836 IHGEFDKGLGIYSDMV 851



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 21/245 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P  +S++ ++  L +     + + L + +   G+  ++YT + LI+ FCK G +     
Sbjct: 437 APSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAAR 496

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +  +++ S   P+ VTF  +I+  C+                    PD  TY ++I  LC
Sbjct: 497 LFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLC 556

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
                 KAKE    +++  V  N  + T+++ GFC      E   ++ EM  +GV+ +++
Sbjct: 557 LTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLI 616

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +F VI+    K    ++ S L   M + GV+PD   +  ++D       +  A   +  M
Sbjct: 617 SFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKM 676

Query: 252 ESMGC 256
            + GC
Sbjct: 677 IADGC 681



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L K + +     LF  +       D Y ++  I  +C++  +     +L R+    
Sbjct: 166 ILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMES-- 223

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       K  K  A+ YN ++ GLC+   V +A E+   M ++ +  + VTY ++
Sbjct: 224 ------------KGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTL 271

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + GFC   +   A  +  +M+     P+V + + ++D L K G +D+A  L   + + G+
Sbjct: 272 VYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGM 331

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            P+ F  N L+D  C   R   A+ LF  M + G
Sbjct: 332 VPNLFACNALIDKLCKDRRFREAERLFRGMANRG 365



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           R+ R+    DV+   SL         T + I+  L K      A++LF +M       + 
Sbjct: 137 RLRRARDAADVLRL-SLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDE 195

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
             YT+ IR +C   + + A+ L   M  +GV+ + V +NV+M  LC+N ++ EA  + + 
Sbjct: 196 YVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNS 255

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           M++ G+  D  TY TL+ GFC T  +  A E+   M S+
Sbjct: 256 MVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSL 294


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L    K   Y   L L  ++ S G+  D  T+++L++  CK  R + G+++
Sbjct: 201 PSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLL 260

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCK 132
           L ++ +   +P+ +T+ S+I    K  K                 P+ +TYN +IDG C 
Sbjct: 261 LKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCH 320

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  ++A  +   M+    KPN V+Y++++ G C    +  +K +   M   G+    + 
Sbjct: 321 DGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIA 380

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LC+NG ++E+  LLD M++ GV PD  T++ L++GFC  G++ + KE+   M 
Sbjct: 381 YTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMY 440

Query: 253 SMG 255
             G
Sbjct: 441 KAG 443



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 50/266 (18%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL I + M    P P  VS ++ +L  L ++  ++   S+ +R+   G+      ++ +
Sbjct: 326 QALTILEMMEATGPKPNEVS-YSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAM 384

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  C+ G ++    +L ++L+    PDVVTF+ LI              +G C+ G + 
Sbjct: 385 IDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLI--------------NGFCRVGKIK 430

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
             KE+  KM    + PN + YT++I  +C   D  EA ++++ M   G   N    NV++
Sbjct: 431 NVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLV 490

Query: 198 DELCKNGKMD-----------------------------------EASSLLDLMIQHGVR 222
             LCK+GK+                                    +A S+ D MI+ G  
Sbjct: 491 SSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHH 550

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELF 248
           P  FTY  LL   C  G+   AK L 
Sbjct: 551 PSHFTYGGLLKALCRAGKFKEAKRLL 576



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 19/234 (8%)

Query: 22  IFDYMLRMHP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           +F  ++  +P   S P V  F++++    +       L  F+ +   G  P +YT ++L+
Sbjct: 83  VFGALMNTYPLCKSNPSV--FDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLL 140

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
               K  +V   ++    +L               +VC PD  T+N +I+ LC +G + K
Sbjct: 141 GKLVKERKVGAVWLFFKEMLAR-------------RVC-PDVSTFNILINVLCVEGKLKK 186

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L  KM++    P+VVTY +V+  +C    +  A  L  +M  +G++ +  T+N+++D
Sbjct: 187 AGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVD 246

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +LCKN +  +   LL  M +  + P+  TYN++++GF   G++  A  +F  M 
Sbjct: 247 DLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMS 300



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 21/246 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +RM+       ++  M+  L +N   +  + L  ++   G+ PD+ T S+LIN FC++G+
Sbjct: 369 MRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGK 428

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPDAITY--------------------NT 125
           + +   ++ ++ ++   P+ + +T+LI   CK   +                      N 
Sbjct: 429 IKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNV 488

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  LCK G V  A+  F  M      PN +T+  +I G+  + +  +A  +F EM+  G
Sbjct: 489 LVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAG 548

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+  T+  ++  LC+ GK  EA  LLD +       D  TYNT+L     +G +  A 
Sbjct: 549 HHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAV 608

Query: 246 ELFVSM 251
            LF  M
Sbjct: 609 ALFDEM 614



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 122/261 (46%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NE++ + D ML+     P V +F++++    +      V  +  ++   GL P+   ++ 
Sbjct: 395 NESVKLLDKMLK-DGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTT 453

Query: 77  LINCFCKMGRVSHGFVVLGRILR-----SCFTPDVVTFTSLIKVCK-------------- 117
           LI  +CK G V   F V   + R     +CF  +V+  +SL K  K              
Sbjct: 454 LIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLV-SSLCKDGKVGVAEYFFHHMSKI 512

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P++IT++ II+G    G   KA  +F +M      P+  TY  +++  C A  + EA
Sbjct: 513 GNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEA 572

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           KRL  ++       + VT+N I+ E  K+G + +A +L D M+Q  V PD++TY  +  G
Sbjct: 573 KRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAG 632

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G++  A   + ++   G
Sbjct: 633 LIRRGKMVAALHFYGNLLGKG 653



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 117/290 (40%), Gaps = 56/290 (19%)

Query: 22   IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
            IF  M       P ++++NI+L   AK K+     +L+  +  TG+FPD  T   LI  F
Sbjct: 716  IFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGF 775

Query: 82   CKMGRVSHGFVVLGR----------------ILRSCFT-------------------PDV 106
            CK   +  G  +L +                I++ C T                   PD+
Sbjct: 776  CKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDM 835

Query: 107  VTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
             T  S+I V                     C PD   Y  +++ +C+ G +  A +L  +
Sbjct: 836  TTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDE 895

Query: 146  MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
            M+   +    V  ++++RG        EAK +   M+ + + P + TF  +M   C+N  
Sbjct: 896  MEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNES 955

Query: 206  MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + EA  L D M    V+ D   YN L+ G C  G V  A +L+  ++  G
Sbjct: 956  LVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRG 1005



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +CK +   ++ +I    ++G V  A E F  M  +   P+V T   ++            
Sbjct: 93  LCKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAV 152

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              F EM+ + V P+V TFN++++ LC  GK+ +A  LL  M + G  P   TYNT+L+ 
Sbjct: 153 WLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNW 212

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C  GR   A EL   M S G
Sbjct: 213 YCKKGRYKAALELIDQMGSKG 233



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 21/219 (9%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            +FN+++    +         L   +N   +FPD+ TH  +I+   ++  V    ++L  +
Sbjct: 802  TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861

Query: 98   LRSCFTPDVVTFTSLI-KVCKPDAI--------------------TYNTIIDGLCKQGFV 136
            L     PD   + +L+ ++C+   I                      + ++ GL K G V
Sbjct: 862  LERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++AK +   M  K++ P + T+T+++  FC      EA +L   M    V+ +V+ +NV+
Sbjct: 922  EEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVL 981

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  LC +G +  A  L   + Q G+ P+  TY  L+D  
Sbjct: 982  ISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAI 1020



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 24/256 (9%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F +M ++   P  ++ F+ ++     + +     S+F  +   G  P  +T+  L+   C
Sbjct: 506 FHHMSKIGNVPNSIT-FDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALC 564

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTF-TSLIKVCK--------------------PDAI 121
           + G+      +L ++       D VT+ T L++  K                    PD+ 
Sbjct: 565 RAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSY 624

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           TY  I  GL ++G +  A   +  +  K  V P  V YT+ + G   A     A     +
Sbjct: 625 TYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCED 684

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-GVRPDAFTYNTLLDGFCLTG 239
           M   G+  +++  NVI++   + GKM +A  +  +M     + P   TYN LL G+    
Sbjct: 685 MEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKK 744

Query: 240 RVNHAKELFVSMESMG 255
            ++    L+  M   G
Sbjct: 745 NLSKCSNLYNIMMRTG 760



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 13/238 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL  +  +L      P    +   +  L +       L   + +   GL  DL   ++++
Sbjct: 642 ALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVIL 701

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N + +MG+++                D+ T         P   TYN ++ G  K+  + K
Sbjct: 702 NGYSRMGKMAK-------------AGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSK 748

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
              L+  M    + P+ +T  S+I GFC +   +   +L  +M+  GV  +  TFN+++ 
Sbjct: 749 CSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIM 808

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + C+  ++ +A  L+++M    + PD  T+++++        V  +  L   M   GC
Sbjct: 809 KYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGC 866


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+    SP  V ++++++    K +  DTVL L   + + G+ P++Y+++I 
Sbjct: 196 EAMEVYKAMVEDGISPS-VRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTIC 254

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    +  R    + +LG++  S               CKPD +T+  +I  LC  G + 
Sbjct: 255 IRVLGQAARFDEAYQILGKMEDSG--------------CKPDVVTHTVVIQVLCDAGRLS 300

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK++F KMK  + KP+ VTY +++     + D      ++  M+  G   N+V++  ++
Sbjct: 301 DAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVV 360

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LC+ G++DEA ++ D M + G+ P+ ++YN+L+ GF      + A ELF  M + G
Sbjct: 361 DALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACG 418



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 15/235 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +FD M     SP   S +N ++    K   +D  L LF  +N+ G  P+ YTH +
Sbjct: 370 DEALAVFDEMKEKGISPEQYS-YNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVL 428

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            IN + K G+          +      PDV                 N ++  L + G +
Sbjct: 429 FINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAA--------------NAVLSSLARSGRL 474

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             AK +F ++KD  V P+ +TYT +I+    A+  +EA   F +M++ G  P+V+  N +
Sbjct: 475 GMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSL 534

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +D L K GK +EA  L   + +  + P   TYNTLL G    G+V     L   M
Sbjct: 535 IDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEM 589



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ I +  L +   +D    +  ++  +G  PD+ TH+++I   C  GR+S    V
Sbjct: 246 PNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDV 305

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDA---------------------ITYNTIIDGLCK 132
             ++  S   PD VT+ +L+  C                         ++Y  ++D LC+
Sbjct: 306 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQ 365

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  +F +MK+K + P   +Y S+I GF  A+ ++ A  LF  M   G  PN  T
Sbjct: 366 VGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYT 425

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             + ++   K+G+  +A    + M   G+ PD    N +L     +GR+  AK +F  ++
Sbjct: 426 HVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELK 485

Query: 253 SMG 255
            MG
Sbjct: 486 DMG 488



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 21/240 (8%)

Query: 37   SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
             S+N ++  L      D    LF  +   G  PD +T++++++   K  R+     V   
Sbjct: 774  GSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAE 833

Query: 97   ILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGF 135
            + R  +    VT+ ++I                         P   TY  ++DGL K G 
Sbjct: 834  MHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGK 893

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            +  A+ LF +M +   KPN   Y  ++ G   A +     ++F +M++QG+ P++ ++ V
Sbjct: 894  MVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTV 953

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++D LC  G++++  S    +++ G+ PD   YN L+DG   + R+  A  LF  M+  G
Sbjct: 954  LIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKG 1013



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 20/239 (8%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A  +F+ ML  +   P  + +NI+L       + + V  +F+++   G+ PD+ ++++L
Sbjct: 896  DAENLFNEMLE-YGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVL 954

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
            I+  C  GR++ G     ++L     PD+              I YN +IDGL K   ++
Sbjct: 955  IDTLCTAGRLNDGLSYFRQLLELGLEPDL--------------IIYNLLIDGLGKSERIE 1000

Query: 138  KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            +A  LF +MK K + PN+ TY S+I     A   +EA +++ E++ +G +PNV T+N ++
Sbjct: 1001 EAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALI 1060

Query: 198  DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                 +G  D A +  D  +  GV         L+ G      +N A+ LF  M+  GC
Sbjct: 1061 RGYSVSGSTDNAYAAYDC-VAVGVS----LKTALISGLVDENLINIAEGLFAEMKRRGC 1114



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 21/228 (9%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++N ++  L K+K  +  + L+  L S G  P   T+  L++   K G++     +   +
Sbjct: 845  TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEM 904

Query: 98   LRSCFTPDVVTFTSLIK----------VCK-----------PDAITYNTIIDGLCKQGFV 136
            L     P+   +  L+           VC+           PD  +Y  +ID LC  G +
Sbjct: 905  LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRL 964

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +     F ++ +  ++P+++ Y  +I G   +    EA  LF EM  +G+ PN+ T+N +
Sbjct: 965  NDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSL 1024

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            +  L K GK  EA+ + + ++  G +P+ FTYN L+ G+ ++G  ++A
Sbjct: 1025 ILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNA 1072



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 23/262 (8%)

Query: 1   ERLKSSGEGDITTIT---------PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
           ER +++G G  T            P EAL +F    R   +     S N ML  +  +  
Sbjct: 64  ERRRAAGAGTGTESVVHMLRSAPGPAEALELFTAAARQPTAVHTTESCNYMLELMRAHGR 123

Query: 52  YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
              +  +F          DL    I+         V  G  V G  LRS      V   +
Sbjct: 124 VGDMAQVF----------DLMQKQIVKANVGTFATVFSGVGVQGG-LRSAPVALPVMREA 172

Query: 112 LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
            + +   +  TYN +I  L K GF  +A E++  M +  + P+V TY+ ++  F    D 
Sbjct: 173 GMSL---NGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDV 229

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +    L  EM  +GV+PNV ++ + +  L +  + DEA  +L  M   G +PD  T+  +
Sbjct: 230 DTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVV 289

Query: 232 LDGFCLTGRVNHAKELFVSMES 253
           +   C  GR++ AK++F  M++
Sbjct: 290 IQVLCDAGRLSDAKDVFWKMKA 311



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 58/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++N +L CL+KN   +  + +   +   G  PDL +++ ++    K  R    F 
Sbjct: 595 PPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFR 654

Query: 93  VLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDG- 129
           +  + ++    PD  T  +++                        C  D  +++++++G 
Sbjct: 655 MFCQ-MKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGI 713

Query: 130 ----------------------------------LCKQGFVDKAKELFLKMKDKNVKPNV 155
                                             LCK     +A +LF K K   V    
Sbjct: 714 LNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKT 773

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            +Y S+IRG    N  + A+ LF EM   G  P+  T+N+I+D + K+ +++E   +   
Sbjct: 774 GSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAE 833

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G      TYNT++ G   + R+  A +L+ ++ S G
Sbjct: 834 MHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEG 873



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YN++I GL  +  +D A++LF +MK     P+  TY  ++     +    E  R+  EM
Sbjct: 775 SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEM 834

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G +   VT+N I+  L K+ ++++A  L   ++  G  P   TY  LLDG    G++
Sbjct: 835 HRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKM 894

Query: 242 NHAKELFVSMESMGC 256
             A+ LF  M   GC
Sbjct: 895 VDAENLFNEMLEYGC 909



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 52/276 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +F  +  M   P    ++N +L  L +      V+ L + +  +   P+L T++ 
Sbjct: 545 NEAWKLFHQLKEMKIEPTN-GTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNT 603

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +++C  K G V+    +L              ++   K C PD  +YNT++ GL K+   
Sbjct: 604 VLDCLSKNGEVNCAIGML--------------YSMTEKGCTPDLSSYNTVMYGLIKEERF 649

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSV----------------IRGFCYANDWNEAKRLFIE 180
           ++A  +F +MK K + P+  T  ++                ++ +    D N  K  F  
Sbjct: 650 EEAFRMFCQMK-KILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHS 708

Query: 181 MMD-----QGVQ------PNVVTFNVIMDE---------LCKNGKMDEASSLLDLMIQHG 220
           +M+      GV+       N+ +  +++++         LCK+ K  EA  L +     G
Sbjct: 709 LMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLG 768

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           V     +YN+L+ G      ++ A++LF  M+ +GC
Sbjct: 769 VSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 804



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           ++ K +  T+ T+  G+  QG +  A      M++  +  N  TY  +I     +    E
Sbjct: 137 QIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAE 196

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M++ G+ P+V T++V+M    K   +D    LL+ M   GV+P+ ++Y   + 
Sbjct: 197 AMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIR 256

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                 R + A ++   ME  GC
Sbjct: 257 VLGQAARFDEAYQILGKMEDSGC 279


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 24/258 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+  F  M   H     + SFN +L  L K+   +T   L + L S    PD  +++
Sbjct: 152 PHRAVRTFLSM-HEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSR-FRPDTVSYN 209

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
           IL N +C   R      VL  +++    P +VT+ +++K                     
Sbjct: 210 ILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKR 269

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+ D ++Y T+I G  + G V KAK +F +M  + V PNV TY ++I+ FC  +    A
Sbjct: 270 KCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNA 329

Query: 175 KRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
             +F EM+ +GV  PNVVTFNV++  LC  G M+ A   ++ M +HG+R    TYN ++ 
Sbjct: 330 VAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIR 389

Query: 234 GFCLTGRVNHAKELFVSM 251
            FC  G +    E+F  M
Sbjct: 390 YFCDAGEIEKGLEVFGKM 407



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 33/264 (12%)

Query: 17  NEALCIFDYM--LRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYT 73
           N A  +   M  LR+ PSP  ++        + K ++   T LS+    +  GL  DL++
Sbjct: 118 NSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSM----HEHGLHQDLHS 173

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL-------------IKVCK--- 117
            + L++  CK  RV     +L R L+S F PD V++  L             ++V K   
Sbjct: 174 FNTLLDILCKSNRVETAHDLL-RTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMV 232

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                P  +TYNT++ G  +   + +A E +L+MK +  + +VV+YT+VI GF  A +  
Sbjct: 233 QRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVK 292

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTL 231
           +AKR+F EM+ +GV PNV T+N ++   CK   +  A ++ + M++ GV  P+  T+N +
Sbjct: 293 KAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVV 352

Query: 232 LDGFCLTGRVNHAKELFVSMESMG 255
           + G C  G +  A      ME MG
Sbjct: 353 IRGLCHVGDMERALGF---MERMG 373



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 16/216 (7%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+  ++    +         +F  +   G+ P++ T++ LI  FCK   V +   V  
Sbjct: 275 VVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFE 334

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++R               VC P+ +T+N +I GLC  G +++A     +M +  ++ +V
Sbjct: 335 EMVREG-------------VCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASV 381

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE---ASSL 212
            TY  VIR FC A +  +   +F +M D    PN+ T+NV++  +    K ++   A  L
Sbjct: 382 QTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKL 441

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           L  M++ G  P  FT+N +L+G  +TG  + AK++ 
Sbjct: 442 LMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDIL 477



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 53/241 (21%)

Query: 18  EALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +AL  F ++ R  PS     SSF+  +   A+ + +++  +L  R+ S  L P   T +I
Sbjct: 82  KALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAI 141

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGF 135
           L   +  +G+                   V TF S+ +     D  ++NT++D LCK   
Sbjct: 142 LAERYASIGKPHRA---------------VRTFLSMHEHGLHQDLHSFNTLLDILCKSNR 186

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V+ A +L   +K +                                     +P+ V++N+
Sbjct: 187 VETAHDLLRTLKSR------------------------------------FRPDTVSYNI 210

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + +  C   +   A  +L  M+Q G+ P   TYNT+L G+  + ++  A E ++ M+   
Sbjct: 211 LANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRK 270

Query: 256 C 256
           C
Sbjct: 271 C 271



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 46/202 (22%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F+ M+R     P V +FN+++  L      +  L   +R+   GL   + T++++I
Sbjct: 329 AVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVI 388

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             FC  G +  G  V G++                 +C P+  TYN +I  +    FV K
Sbjct: 389 RYFCDAGEIEKGLEVFGKMGDG--------------LCLPNLDTYNVLISAM----FVRK 430

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
             E                            D   A +L +EM+++G  P   TFN +++
Sbjct: 431 KSE----------------------------DLVVAGKLLMEMVERGFLPRKFTFNRVLN 462

Query: 199 ELCKNGKMDEASSLLDLMIQHG 220
            L   G  D A  +L +  + G
Sbjct: 463 GLVITGNQDFAKDILRMQSRCG 484


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 25/248 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F I++    K    D  L L   + S G+ P+   ++ +++ FC+ GR      +
Sbjct: 180 PNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKL 239

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK------------------------PDAITYNTIID 128
           + ++      PD+VTF S I  +CK                        P++ITYN ++ 
Sbjct: 240 VEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLK 299

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK G ++ AK LF  +++ +   ++ +Y   ++G      + EA+ +  +M+D+G+ P
Sbjct: 300 GFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGP 359

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ ++N++MD LCK G + +A +++ LM ++GV PDA TY  LL G+C  G+V+ AK L 
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLL 419

Query: 249 VSMESMGC 256
             M    C
Sbjct: 420 QEMMRNNC 427



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 20/229 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R   + P +  +N++L    + +  + V  L+K +   G+ P+ YT ++LI   C     
Sbjct: 104 RFPENKPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCD---- 159

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                       SC       F  +  K CKP+  T+  ++ G CK G  DK  EL   M
Sbjct: 160 -----------SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSM 208

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           +   V PN V Y +++  FC     +++++L  +M ++G+ P++VTFN  +  LCK GK+
Sbjct: 209 ESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKV 268

Query: 207 DEASSLL-DLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +AS +  D+ +   +   RP++ TYN +L GFC  G +  AK LF S+
Sbjct: 269 LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESI 317



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 132/274 (48%), Gaps = 44/274 (16%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +     + S+NI L  L ++  +    ++ K++   G+ P +Y+++IL++  CK+G 
Sbjct: 317 IRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGM 376

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNT 125
           +S    ++G + R+  +PD VT+  L+       KV              C P+A T N 
Sbjct: 377 LSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNI 436

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL-------- 177
           ++  L   G + +A+EL  KM +K    + VT   ++ G C + + ++A  +        
Sbjct: 437 LLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496

Query: 178 ----------FIEMMDQGV-----QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
                     +I ++D  +      P+++T++ +++ LCK G+  EA +L   M+   ++
Sbjct: 497 SAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQ 556

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           PD+  YN  +  FC  G+++ A  +   ME  GC
Sbjct: 557 PDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PDL T+S L+N  CK GR +    +   ++                  +PD++ YN  I
Sbjct: 521 LPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKL--------------QPDSLAYNIFI 566

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
              CKQG +  A  +   M+ K    ++ TY S+I G    N   E   L  EM ++G+ 
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGIS 626

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN+ T+N  +  LC+ GK+++A++LLD M+Q  + P+ F++  L+  FC     + A+E+
Sbjct: 627 PNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEV 686

Query: 248 FVSMESM 254
           F +  S+
Sbjct: 687 FETAVSI 693



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 24/223 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +SS   ++   AK+ H D     F+ + S   FP+                   G  +  
Sbjct: 75  LSSLLSVVSIFAKSNHIDKAFPQFQFVRSR--FPE----------------NKPGIYLYN 116

Query: 96  RILRSCFTPDVVTFTSLIK----VC--KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
            +L SC     V F S +     +C   P+  T+N +I  LC    VD A+ELF +M +K
Sbjct: 117 VLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEK 176

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
             KPN  T+  ++RG+C A   ++   L   M   GV PN V +N I+   C+ G+ D++
Sbjct: 177 GCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDS 236

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             L++ M + G+ PD  T+N+ +   C  G+V  A  +F  ME
Sbjct: 237 EKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 15/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P P  ++ +N+ML    K    +   +LF+ +        L +++I +    + G+    
Sbjct: 287 PRPNSIT-YNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEA 345

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             VL +++     P + +              YN ++DGLCK G +  AK +   MK   
Sbjct: 346 ETVLKQMIDKGIGPSIYS--------------YNILMDGLCKLGMLSDAKTIVGLMKRNG 391

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P+ VTY  ++ G+C     + AK L  EMM     PN  T N+++  L   G++ EA 
Sbjct: 392 VSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAE 451

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  M + G   D  T N ++DG C +G ++ A E+   M   G
Sbjct: 452 ELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP    YN +++   ++  V+    L+  M    + P   T+  +IR  C ++  + A+ 
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM ++G +PN  TF +++   CK G  D+   LL+ M   GV P+   YNT++  FC
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFC 228

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR + +++L   M   G
Sbjct: 229 REGRNDDSEKLVEKMREEG 247



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 85/199 (42%), Gaps = 21/199 (10%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           +++LG   KN+ ++ +  L   +   G+ P++ T++  I   C+ G+V     +L  +++
Sbjct: 599 SLILGLGIKNQIFE-IHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQ 657

Query: 100 SCFTPDVVTFTSLI--------------------KVCKPDAITYNTIIDGLCKQGFVDKA 139
               P+V +F  LI                     +C      Y+ + + L   G + KA
Sbjct: 658 KNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKA 717

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            EL   + D+  +     Y  ++   C  ++   A  +  +M+D+G   +      ++D 
Sbjct: 718 TELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDG 777

Query: 200 LCKNGKMDEASSLLDLMIQ 218
           L K G   EA++  + M++
Sbjct: 778 LGKMGNKKEANNFAEKMME 796



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 152 KPNVVTYTSVIRGFCYANDWNEA--KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           K  + +  SV+  F  +N  ++A  +  F+       +P +  +NV+++   +  +++  
Sbjct: 72  KTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFV 131

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           S L   M+  G+ P+ +T+N L+   C +  V+ A+ELF  M   GC
Sbjct: 132 SWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGC 178


>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial; AltName: Full=Protein
           PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
 gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + + +++  L   + +       K++   GL   +Y+++ +I+C CK  R+ +  + 
Sbjct: 388 PGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMF 447

Query: 94  LGRILRSCFTPDVVTFTS---------------------LIKVCKPDAITYNTIIDGLCK 132
           L  +     +P++VTF +                     L+   KPD IT++ II+ LC+
Sbjct: 448 LTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCR 507

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A + F +M +  ++PN +TY  +IR  C   D + + +LF +M + G+ P++  
Sbjct: 508 AKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYA 567

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N  +   CK  K+ +A  LL  M++ G++PD FTY+TL+     +GR + A+E+F S+E
Sbjct: 568 YNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIE 627

Query: 253 SMGC 256
             GC
Sbjct: 628 RHGC 631



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 21/213 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+N ++ CL K +  +        +   G+ P+L T +  ++ +   G V     VL 
Sbjct: 425 VYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLE 484

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
           ++L   F PDV+TF+ +I  +C+                    P+ ITYN +I   C  G
Sbjct: 485 KLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTG 544

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             D++ +LF KMK+  + P++  Y + I+ FC      +A+ L   M+  G++P+  T++
Sbjct: 545 DTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYS 604

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            ++  L ++G+  EA  +   + +HG  PD++T
Sbjct: 605 TLIKALSESGRESEAREMFSSIERHGCVPDSYT 637



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I    + G      ++F ++    +KP+   Y +VI     +N  + A   F +M   G
Sbjct: 151 LIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG 210

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            +P+  T+N+++  +CK G +DEA  L+  M Q G RP+ FTY  L+DGF + GRV+ A
Sbjct: 211 CKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEA 269



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 33/273 (12%)

Query: 1   ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-----YDTV 55
           E LK      +  + PNEA  I  ++  +    PP  +F +++G + K+ +     YD V
Sbjct: 268 EALKQLEMMRVRKLNPNEA-TIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAV 326

Query: 56  L-------------SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF 102
           L                +++   G  PD  T +  ++C  K     H  V   RI     
Sbjct: 327 LYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLK----GHDLVETCRIFDGFV 382

Query: 103 TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
           +  V          KP    Y  ++  L       +      +M    +  +V +Y +VI
Sbjct: 383 SRGV----------KPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVI 432

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
              C A     A     EM D+G+ PN+VTFN  +      G + +   +L+ ++ HG +
Sbjct: 433 DCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFK 492

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           PD  T++ +++  C    +  A + F  M   G
Sbjct: 493 PDVITFSLIINCLCRAKEIKDAFDCFKEMLEWG 525



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 95  GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           GR+  + +  DV    S + + KP    YN +ID L K   +D A   F +M+    KP+
Sbjct: 156 GRLGLAKYCNDVFAQISFLGM-KPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPD 214

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
             TY  +I G C     +EA RL  +M  +G +PNV T+ +++D     G++DEA   L+
Sbjct: 215 RFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLE 274

Query: 215 LMIQHGVRPDAFTYNTLLDG 234
           +M    + P+  T  T + G
Sbjct: 275 MMRVRKLNPNEATIRTFVHG 294



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           L +H   P V +F++++ CL + K        FK +   G+ P+  T++ILI   C  G 
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGD 545

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                 +  ++  +  +PD+                YN  I   CK   V KA+EL   M
Sbjct: 546 TDRSVKLFAKMKENGLSPDLY--------------AYNATIQSFCKMRKVKKAEELLKTM 591

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD-ELCKNGK 205
               +KP+  TY+++I+    +   +EA+ +F  +   G  P+  T  ++ + +L K+G 
Sbjct: 592 LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGL 651

Query: 206 MDEASS 211
             E  S
Sbjct: 652 SRETVS 657



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P   ++NI++  + K    D  + L K++   G  P+++T++ILI+ F   GR
Sbjct: 206 MRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGR 265

Query: 87  VSHGFVVLGRILRSCFTPD---VVTFTSLIKVCKP------------------DAITYNT 125
           V      L  +      P+   + TF   I  C P                    + Y+ 
Sbjct: 266 VDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDA 325

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++  L       +  +   K+ ++   P+  T+ + +      +D  E  R+F   + +G
Sbjct: 326 VLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRG 385

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           V+P    + V++  L    +  E    L  M   G+    ++YN ++D  C   R+ +A 
Sbjct: 386 VKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAA 445

Query: 246 ELFVSMESMG 255
                M+  G
Sbjct: 446 MFLTEMQDRG 455



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
           Y ND      +F ++   G++P+   +N ++D L K+  +D A      M   G +PD F
Sbjct: 163 YCND------VFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRF 216

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TYN L+ G C  G V+ A  L   ME  G
Sbjct: 217 TYNILIHGVCKKGVVDEAIRLVKQMEQEG 245


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
            E++ +F  M + H   P V +FN +L  L K    +    ++  + ST G+ PD +T +
Sbjct: 166 QESIKVFTIM-KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFN 224

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FC  G V  GF +           D+  F      C+PD +TYNT++DGLC+ G 
Sbjct: 225 ILIRGFCMNGMVDDGFRIFN---------DLSRFG-----CEPDVVTYNTLVDGLCRAGK 270

Query: 136 VDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V  A  +   M  K+V   PNVVTYT++IRG+C   +  +A  +F EM++QG++ N +T+
Sbjct: 271 VTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITY 330

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           N ++  LC+  K ++   +L+     G   PD  T+NTL+   C  G ++ A ++F  M 
Sbjct: 331 NTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMS 390

Query: 253 SM 254
            +
Sbjct: 391 EL 392



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 31/270 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  ++D ML  +   P   +FNI++     N   D    +F  L+  G  PD+ T++ 
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNT 260

Query: 77  LINCFCKMGRVSHGF-VVLGRILRSC-FTPDVVTFTSLIK-VC----------------- 116
           L++  C+ G+V+  + VV G   +S    P+VVT+T+LI+  C                 
Sbjct: 261 LVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVN 320

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWN 172
              K + ITYNT+I GLC+    +K K++      D    P+  T+ +++   C+A + +
Sbjct: 321 QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLD 380

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDA 225
           +A ++F  M +  +QP+  T++ ++  LC+ G  ++A  LLD +++        G +P  
Sbjct: 381 DALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLV 440

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             YN +    C TG+   A++ F  +   G
Sbjct: 441 AAYNPIFKYLCETGKTKKAEKAFRQLMRRG 470



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           + K +A  +N+++    + G   ++ ++F  MK   V P+VVT+ S++         N A
Sbjct: 144 IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMA 203

Query: 175 KRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           K+++ EM+   GV P+  TFN+++   C NG +D+   + + + + G  PD  TYNTL+D
Sbjct: 204 KKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVD 263

Query: 234 GFCLTGRVNHA 244
           G C  G+V  A
Sbjct: 264 GLCRAGKVTVA 274



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 27/218 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++ C     + D  L +F+R++   + PD  T+S L+   C+ G       +
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDL 420

Query: 94  LGRILR--------------SCFTP-------------DVVTFTSLIKVCKPDAITYNTI 126
           L ++L               + + P                 F  L++    D  +Y T+
Sbjct: 421 LDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTL 480

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I G CK+G  +   EL + M  K+  P+  TY S+I G  + +    A +   +M+    
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSH 540

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +PN  TF+ I+ +L + G+  E++SL+ LM+   +R +
Sbjct: 541 RPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQN 578



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +Y ++++ L +   ++ A+     ++ ++   VK     + S++R F  A  + E+ ++F
Sbjct: 113 SYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVF 172

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCL 237
             M   GV P+VVTFN ++  L K G+ + A  + D M+  +GV PD FT+N L+ GFC+
Sbjct: 173 TIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCM 232

Query: 238 TGRVNHAKELFVSMESMGC 256
            G V+    +F  +   GC
Sbjct: 233 NGMVDDGFRIFNDLSRFGC 251



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 33/247 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N +   L +          F++L   G   D  ++  LI   CK G    G+ +
Sbjct: 438 PLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGT-QDPPSYKTLIMGHCKEGTFESGYEL 496

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR  F PD  T+ SLI                        +P++ T+++I+  L +
Sbjct: 497 LVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLE 556

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG   ++  L   M DKN++ N+   T  +R    A   ++A +L   +  +G       
Sbjct: 557 QGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKG------- 609

Query: 193 FNVIMDE----LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V M+E    LC   K+ + S LL   ++     D    NT++   C   +++ A  L+
Sbjct: 610 YSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLY 669

Query: 249 VSMESMG 255
             +  MG
Sbjct: 670 YKLVEMG 676


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FNI++  L    +     +L K++   G  P + T++ L+N +CK GR      +
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 290

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  ++      DV T+   I                     ++  P+ +TYNT+I+G  K
Sbjct: 291 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 350

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +  A ++F +M   ++ PN VTY ++I G C+  D+ EA RL   M   G++ N VT
Sbjct: 351 EGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 410

Query: 193 FN-----------------------------------VIMDELCKNGKMDEASSLLDLMI 217
           +                                    V++D LCKNG +DEA  L+  M 
Sbjct: 411 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 470

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + GV PD  TY++L++GFC  G +  AKE+   M   G
Sbjct: 471 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 508



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +F+ M +   SP  V+ +N ++G       ++  L L   + + GL  +  T+  L+
Sbjct: 357 AAQVFNEMSKFDLSPNCVT-YNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLL 415

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  +    F +  R+L      D+V             I Y  +IDGLCK G +D+
Sbjct: 416 NGLCKHEK----FELAKRLLERMRVNDMVV----------GHIAYTVLIDGLCKNGMLDE 461

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A +L   M    V P+V+TY+S+I GFC   +   AK +   M   G+  N + ++ ++ 
Sbjct: 462 AVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIY 521

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             C++G + EA  +  +M  +G   D FT N L+   C  G++  A++    M  +G
Sbjct: 522 NFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIG 578



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 56/267 (20%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++ +++  L KN   D  + L   +   G+ PD+ T+S LIN FC++G +     ++ R+
Sbjct: 445 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 504

Query: 98  LRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFV 136
            RS    + + +++LI   C+                     D  T N ++  LC+ G +
Sbjct: 505 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 564

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT---- 192
            +A++    M    + PN +TY  +I G+    D   A   F +M+  G  P+  T    
Sbjct: 565 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 624

Query: 193 -------------------------------FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
                                          +N ++ E CK+G + EA +L D M+Q+ V
Sbjct: 625 LKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNV 684

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELF 248
            PD++TY++LL G C  G+   A  LF
Sbjct: 685 LPDSYTYSSLLTGLCRKGKAVTAVCLF 711



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 19/233 (8%)

Query: 22  IFDYMLRMHP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           IF  ++  +P   S P V  F++++    K    D  +  F+ +   G  P +YT ++++
Sbjct: 148 IFGALMDTYPLCNSIPSV--FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMIL 205

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
               K  R    + +   +      P+V TF              N +I+GLC +G + K
Sbjct: 206 ASMVKDKRTELVWSLFREMSDKGICPNVGTF--------------NILINGLCVEGNLKK 251

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L  +M++    P +VTY +++  +C    +  A  L   M+ +G++ +V T+NV +D
Sbjct: 252 AGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFID 311

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            LC N +  +A  LL  M +  + P+  TYNTL++GF   G++  A ++F  M
Sbjct: 312 NLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEM 364



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 118/242 (48%), Gaps = 23/242 (9%)

Query: 18  EALCIFDYM----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           EAL + D+M    LR++       ++  +L  L K++ ++    L +R+    +      
Sbjct: 391 EALRLLDHMEAAGLRLNEV-----TYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIA 445

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           +++LI+  CK G +     ++G + +    PDV+T++SL              I+G C+ 
Sbjct: 446 YTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSL--------------INGFCRV 491

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G +  AKE+  +M    +  N + Y+++I  FC   +  EA +++  M   G   +  T 
Sbjct: 492 GNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTC 551

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           NV++  LC++GK+ EA   L  M + G+ P++ TY+ +++G+   G   +A   F  M  
Sbjct: 552 NVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIK 611

Query: 254 MG 255
            G
Sbjct: 612 CG 613



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD M++ +  P   +  +++ G   K K    V      +    LFP+   ++ 
Sbjct: 670 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 729

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   K G     F     +++    PD V F              N IID   ++G +
Sbjct: 730 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAF--------------NAIIDSCSRRGQM 775

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA + F  M+   V PN+ TY  ++ GF           L+  MM +G+ P+ +TF+ +
Sbjct: 776 MKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSL 835

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L K+G  D    LL  MI  G   D FT+N L++ +  +G++  A +L   M ++G
Sbjct: 836 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLG 894



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 25  YMLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           ++ R+H  P  V S  +N +L    K+ +    ++LF ++    + PD YT+S L+   C
Sbjct: 640 FLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLC 699

Query: 83  KMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           + G+      + G  + R    P+ V +T L+              DGL K G    A  
Sbjct: 700 RKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLV--------------DGLSKAGHPKAAFY 745

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
            F +M  K   P+ V + ++I          +A   F  M   GV PN+ T+N+++    
Sbjct: 746 FFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFS 805

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           K   +    SL   M++ G+ PD  T+++L+ G   +G
Sbjct: 806 KKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSG 843



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 110/250 (44%), Gaps = 21/250 (8%)

Query: 27   LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
            +R     P ++++NI+L   +K +     LSL+  +   G+FPD  T   LI    K G 
Sbjct: 785  MRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGI 844

Query: 87   VSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK--------------PDAITYNT 125
               G  +LG+++      D  TF  LI       K+ K              PD  TYN 
Sbjct: 845  PDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNH 904

Query: 126  IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
            I +GL K+    ++  +  +M +  V P    Y ++I G C   D   A +L  EM   G
Sbjct: 905  IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALG 964

Query: 186  VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
               + V  + ++  L   GK ++A  +LD M++  + P   T+ TL+  FC   ++  A 
Sbjct: 965  FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEAL 1024

Query: 246  ELFVSMESMG 255
            +L   ME  G
Sbjct: 1025 KLKGVMELCG 1034



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 20/223 (8%)

Query: 16  PNEALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  A   FD M++   HPS     ++  +L  L K  +         RL+      D   
Sbjct: 599 PLNAFSFFDDMIKCGQHPS---FFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVM 655

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           ++ L+   CK G +     +  +++++   PD  T++SL+               GLC++
Sbjct: 656 YNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT--------------GLCRK 701

Query: 134 GFVDKAKELF-LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           G    A  LF   M    + PN V YT ++ G   A     A   F EMM +G  P+ V 
Sbjct: 702 GKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVA 761

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           FN I+D   + G+M +A+     M   GV P+  TYN LL GF
Sbjct: 762 FNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGF 804



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 20   LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
            L ++  M+R    P  ++  +++LG L+K+   D  + L  ++   G   D +T +ILIN
Sbjct: 814  LSLYSTMMREGIFPDKLTFHSLILG-LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILIN 872

Query: 80   CFCKMGRVSHGFVVL--------------------GRILRSCFTPDVVTFTSLIK-VCKP 118
             + + G++   F ++                    G   +S F    V    +++    P
Sbjct: 873  KYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIP 932

Query: 119  DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
                Y T+I+G+C+ G +  A +L  +M+      + V  ++++RG  +     +A  + 
Sbjct: 933  KHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVL 992

Query: 179  IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
              M+   + P + TF  +M   C++ K+ EA  L  +M   G++ D   YN L+ G C  
Sbjct: 993  DHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCAN 1052

Query: 239  GRVNHAKELFVSME 252
            G    A EL+  M 
Sbjct: 1053 GDSAAAFELYEEMR 1066



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P  + +  ++  + +         L   + + G        S ++      G+     +V
Sbjct: 932  PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLV 991

Query: 94   LGRILRSCFTPDVVTFTSLI-------------------KVC--KPDAITYNTIIDGLCK 132
            L  +LR    P + TFT+L+                   ++C  K D + YN +I G+C 
Sbjct: 992  LDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCA 1051

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
             G    A EL+ +M+ +++ PN+ TY  ++     AN+  + ++L  ++ ++G+
Sbjct: 1052 NGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGL 1105


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 133/258 (51%), Gaps = 25/258 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           ++  M+R     P V +FN+++  L K    +    + + +   G  P++ +++ LI+ +
Sbjct: 210 VYKEMIR-RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268

Query: 82  CKMG---RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           CK+G   ++     VL  ++ +  +P++ TF  LI                     +  K
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ I+YN++I+GLC  G + +A  +  KM    V+PN++TY ++I GFC  +   EA  +
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDM 388

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  +  QG  P    +N+++D  CK GK+D+  +L + M + G+ PD  TYN L+ G C 
Sbjct: 389 FGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  AK+LF  + S G
Sbjct: 449 NGNIEAAKKLFDQLTSKG 466



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 18/219 (8%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           +M+  L +N+  D V  ++K +    + P+++T +++IN  CK G+++    V+      
Sbjct: 194 LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM------ 246

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVT 157
               D+  +      C P+ ++YNT+IDG CK    G + KA  +  +M + +V PN+ T
Sbjct: 247 ---EDMKVYG-----CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTT 298

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           +  +I GF   ++   + ++F EM+DQ V+PNV+++N +++ LC  GK+ EA S+ D M+
Sbjct: 299 FNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMV 358

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             GV+P+  TYN L++GFC    +  A ++F S++  G 
Sbjct: 359 SAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 126/240 (52%), Gaps = 22/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FNI++    K+ +    + +FK +    + P++ +++ LIN  C  G++S    +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISM 353

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAIT--------------------YNTIIDGLCK 132
             +++ +   P+++T+ +LI   CK D +                     YN +ID  CK
Sbjct: 354 RDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK 413

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D    L  +M+ + + P+V TY  +I G C   +   AK+LF ++  +G+ P++VT
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVT 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+++M+  C+ G+  +A+ LL  M + G++P   TYN ++ G+C  G +  A  +   ME
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQME 532



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 119/233 (51%), Gaps = 22/233 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D M+     P  ++ +N ++    KN      L +F  +   G  P    +++
Sbjct: 348 SEAISMRDKMVSAGVQPNLIT-YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +CK+G++  GF +   + R    PDV T+  LI  +C+                  
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T++ +++G C++G   KA  L  +M    +KP  +TY  V++G+C   +   A  
Sbjct: 467 LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN 526

Query: 177 LFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           +  +M  ++ ++ NV ++NV++    + GK+++A+ LL+ M++ G+ P+  TY
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L +N + +    LF +L S GL PDL T  IL+  +C+ G      ++
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
           L  + +                 KP  +TYN ++ G CK+G +  A  +  +M K++ ++
Sbjct: 493 LKEMSKMGL--------------KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLR 538

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            NV +Y  +++G+       +A  L  EM+++G+ PN +T+ ++ +E+   G
Sbjct: 539 MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 25/206 (12%)

Query: 57  SLFKRLNSTGLFPDL----YTHSI--------------LINCFCKMGRVSHGFVVLGRIL 98
            LF++L S+ L PDL    Y+  +              L++      R S     L   +
Sbjct: 69  ELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFV 128

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK-----ELFLKMKDKNVKP 153
           R+     V +    I +C  D +  N+II  +    + + ++     E F +      K 
Sbjct: 129 RNGSDHQVHSIFHAISMC--DNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKL 186

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + ++   ++      N   + + ++ EM+ + +QPNV TFNV+++ LCK GKM++A  ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + M  +G  P+  +YNTL+DG+C  G
Sbjct: 247 EDMKVYGCSPNVVSYNTLIDGYCKLG 272



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 40/72 (55%)

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G + + ++   +M  L K  +  +   +   MI+  ++P+ FT+N +++  C TG++N A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 245 KELFVSMESMGC 256
           +++   M+  GC
Sbjct: 243 RDVMEDMKVYGC 254


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L +   P+ VTFT              T+IDG CK G VD A E++ +M  +++ P
Sbjct: 229 FDEMLBNGLVPNXVTFT--------------TLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +++TY ++I G C   D  +A  L  EM  +G++P+ +T+  ++D  CK G ++ A    
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYR 334

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 335 KRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   ++  L K K++  V   ++     G    LY  +IL++ FCK G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                   PD  TY+
Sbjct: 151 EIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M B  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P+  T
Sbjct: 384 YTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +++I++  L K   + + + +   +   G  P++ T+S L++ FC+ G       
Sbjct: 345 PPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARA 404

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           +L ++L   F+ +   +  +I                     + CKPD  TYNT+I  LC
Sbjct: 405 MLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLC 464

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
               +++A+ +F  + ++ V  N +TY ++I        W E  RL  EM+  G Q +V+
Sbjct: 465 NNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVI 524

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++N ++  LCK G +D + +LL+ M+  G++P+ F+YN L++  C  G+V  A EL   M
Sbjct: 525 SYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM 584

Query: 252 ESMG 255
            + G
Sbjct: 585 LNQG 588



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 18/255 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D ML M  +   V++FN ++  L           L  R+ + G  P + T+  L
Sbjct: 230 EAAMLLDEMLLMGCAAD-VNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFL 288

Query: 78  INCFCKMGRVSHGFVVLGR-----------ILRSCFTPDVVTFTSLI------KVCKPDA 120
           +   C+  +      +LGR           ++R C T   +   + +      K C PD 
Sbjct: 289 LQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDV 348

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TY+ ++ GLCK G    A  +  +M++K   PN+VTY++++  FC    W++A+ +  +
Sbjct: 349 HTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M+ +G   N   +N I+  LCK+GK+D+A+ L+  M   G +PD  TYNT++   C    
Sbjct: 409 MLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDL 468

Query: 241 VNHAKELFVSMESMG 255
           +  A+ +F ++   G
Sbjct: 469 MEEAEHIFRNLIEEG 483



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 15/216 (6%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           ++ GCL + K       L++ + S G  PD++T+SIL++  CK+GR      +L  +   
Sbjct: 319 VIRGCLTEGK-LARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE- 376

Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                        K C P+ +TY+T++   C+ G  D A+ +  +M  K    N   Y  
Sbjct: 377 -------------KGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNG 423

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +I   C     ++A RL  EM  QG +P++ T+N ++  LC N  M+EA  +   +I+ G
Sbjct: 424 IIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEG 483

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           V  +  TYNTL+      GR      L   M   GC
Sbjct: 484 VVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGC 519



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 45/270 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            AL + D M R     P   S+N++L  LA+   +   L L++R+    + P  +T  + 
Sbjct: 124 RALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 183

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
               C++GR      +L  + R                C PDA+ Y T+I  L  QG V 
Sbjct: 184 ARALCRLGRAGDALALLRGMAR--------------HGCVPDAVLYQTVIHALVAQGGVA 229

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  L  +M       +V T+  ++ G C      EA RL   MM QG  P+VVT+  ++
Sbjct: 230 EAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLL 289

Query: 198 DELCKNGKMDEASSLL-------------------------------DLMIQHGVRPDAF 226
             LC+  + DEA ++L                               ++M   G  PD  
Sbjct: 290 QGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVH 349

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           TY+ L+ G C  GR   A  +   ME  GC
Sbjct: 350 TYSILMHGLCKLGRFGSAVRMLDEMEEKGC 379



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N M+  L  N   +    +F+ L   G+  +  T++ LI+   + GR   G  +
Sbjct: 451 PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRL 510

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L              +  C+ D I+YN +I  LCK+G VD++  L  +M  K +KP
Sbjct: 511 ASEML--------------LHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKP 556

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  +Y  +I   C A    +A  L  EM++QG+ P++VT+N +++ LCK G    A +LL
Sbjct: 557 NNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLL 616

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
           + +    V PD  TYN L+   C
Sbjct: 617 EKLPNENVHPDIVTYNILISWHC 639



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E L +   ML +H     V S+N ++  L K  + D  ++L + + + G+ P+ +++++
Sbjct: 505 QEGLRLASEML-LHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNM 563

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  CK G+V     +   +L    TPD+VT              YNT+I+GLCK G+ 
Sbjct: 564 LINELCKAGKVRDALELSKEMLNQGLTPDIVT--------------YNTLINGLCKVGWT 609

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L  K+ ++NV P++VTY  +I   C     ++A  L  + +  G+ PN  T+ ++
Sbjct: 610 HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMM 669

Query: 197 MDELCKN 203
           +    + 
Sbjct: 670 VQNFVRQ 676


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           SFN +L  L K     +  +++ ++ S+G+ P L T + +IN  CK G+V    +V  +I
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
            +    PD  T+TSLI                       C P+++TY+T+I+GLC +G +
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRI 283

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ++  +M +K ++P V TYT  I   C     ++A  L   M  +G  P+V T+  I
Sbjct: 284 GEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAI 343

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L + GKM+ A  +   M++ G+ P+  TYN L++  C  GR   A ++F  ME  G
Sbjct: 344 ISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHG 402



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 15/230 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ ML+  PSP  V ++N ++    K  + +        +  +   PD  T+  L
Sbjct: 425 KAMVVFNKMLKDGPSPT-VVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCEL 483

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FCK G++         +L+   +P+  T+T++I              DG CK+G +D
Sbjct: 484 ISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMI--------------DGYCKEGKID 529

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  LF +M++     ++ TY ++I G    N ++EA++   +M +QG+QPN +T+  ++
Sbjct: 530 VALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLI 589

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + LCKN   + A  +   M +    P+A TY +L+ G C  G+V+ A+ L
Sbjct: 590 NGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL 639



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ ++  ML+    P  V+ +N ++  L     +   L +F  +   G   +  T++ +I
Sbjct: 356 AIGMYHKMLKEGLVPNTVT-YNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQII 414

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
                M  +    VV  ++L+   +P VVT+ +LI                       C+
Sbjct: 415 KGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCE 474

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TY  +I G CK G +D A   F +M    + PN  TYT++I G+C     + A  L
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSL 534

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F  M + G   ++ T+N I+  L K  +  EA      M + G++P+  TY +L++G C 
Sbjct: 535 FERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCK 594

Query: 238 TGRVNHAKELFVSMESMGC 256
               N A ++F  ME   C
Sbjct: 595 NTATNLAFKIFHEMEKKNC 613



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 120/295 (40%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ + +    P   +  +++LG   +N+  D    +F R+   G  P+  T+S 
Sbjct: 214 QEAVLVFNKIFQFDLCPDAFTYTSLILG-HCRNRKLDKAFEVFDRMVKDGCNPNSVTYST 272

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LIN  C  GR+     +L  +      P V T+T  I                     K 
Sbjct: 273 LINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKG 332

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN------ 169
           C P   TY  II GL + G ++ A  ++ KM  + + PN VTY ++I   C         
Sbjct: 333 CSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIAL 392

Query: 170 ---DWNE--------------------------AKRLFIEMMDQGVQPNVVTFNVIMDEL 200
              DW E                          A  +F +M+  G  P VVT+N ++ E 
Sbjct: 393 KIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVEN 452

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K G ++ A+  L +M +    PD  TY  L+ GFC  G+++ A   F  M   G
Sbjct: 453 LKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCG 507



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 81/140 (57%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP  +T+NT+I+ LCK+G V +A  +F K+   ++ P+  TYTS+I G C     ++A  
Sbjct: 194 KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFE 253

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M+  G  PN VT++ +++ LC  G++ EA  +L+ M + G+ P  +TY   +   C
Sbjct: 254 VFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLC 313

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GRV+ A  L  SM   GC
Sbjct: 314 DIGRVDDAINLVRSMGKKGC 333



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 22/213 (10%)

Query: 65  TGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----- 117
           +GLF   LY+ + L+    K   V+    V  +I  S   P ++TF ++I + CK     
Sbjct: 155 SGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQ 214

Query: 118 ---------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
                          PDA TY ++I G C+   +DKA E+F +M      PN VTY+++I
Sbjct: 215 EAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLI 274

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
            G C      EA  +  EM ++G++P V T+ V +  LC  G++D+A +L+  M + G  
Sbjct: 275 NGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCS 334

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           P   TY  ++ G    G++  A  ++  M   G
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEG 367



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 18/255 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M   +     + ++N ++  L+K   +        ++   GL P+  T++ LI
Sbjct: 531 ALSLFERM-EENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLI 589

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV----------CKPDAI 121
           N  CK    +  F +   + +    P+  T+TSLI       KV          C+P   
Sbjct: 590 NGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTID 649

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY+T++ GLC++G  ++A +L   MK+K + P++  Y S++   C +   + A  +F  M
Sbjct: 650 TYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLM 709

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G QP++  + V++  LC   + +EA ++   +++     D   +  L+DG    G  
Sbjct: 710 AVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDS 769

Query: 242 NHAKELFVSMESMGC 256
           +   +    MES  C
Sbjct: 770 DLCMKFLYLMESRNC 784



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 53/83 (63%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+ ++ ++   GV+P+++TFN +++ LCK GK+ EA  + + + Q  + PDAFTY +L+ 
Sbjct: 181 AQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLIL 240

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C   +++ A E+F  M   GC
Sbjct: 241 GHCRNRKLDKAFEVFDRMVKDGC 263



 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +  +L    K+   D  L +F  +   G  P L+ + +LI   C + R      +
Sbjct: 681 PSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNI 740

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L+  +  D++ +T L+              DGL ++G  D   +    M+ +N  P
Sbjct: 741 FQSLLKKQWNSDLIVWTVLV--------------DGLLQEGDSDLCMKFLYLMESRNCTP 786

Query: 154 NVVTYTSVIR 163
           ++ TY  + R
Sbjct: 787 SLHTYIILAR 796


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++++++  L +    D  L L + + + GL PD Y ++ LI+ FC+  R + G  +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +      PD V +T+LI                     +  K +  TY  +I GLCK
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF--------------------------- 165
            G ++KA++LF +M    +KP++ TY  +I G+                           
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 166 --------CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                   C+  D   A  LF EM+  G++PN+V +  I+  L K G+ +EA  +L +M 
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK 504

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD F YNT++ GFC  G++   K   V M + G
Sbjct: 505 DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKG 542



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 22/225 (9%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K+ +     + F+ +   G+ PD+ THS+LI+   K G++     V   +L     PDV 
Sbjct: 594 KDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVF 653

Query: 108 TFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           T+TSLI  +CK                    P+ +TYN +I+GLCK G + KA+ELF  +
Sbjct: 654 TYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGI 713

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
            +K +  N VTY+++I G+C + +  EA +LF  M   GV P+   +  ++D  CK G  
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNT 773

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++A SL   M++ G+      +N L+DGF   G++  A +L   M
Sbjct: 774 EKALSLFLGMVEEGIASTP-AFNALIDGFFKLGKLIEAYQLVEDM 817



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           + M    P + ++N ++    K ++ +    L   +    L  + Y    ++N  C  G 
Sbjct: 398 MTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGD 457

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK----------------VCK-----PDAITYNT 125
           ++    +   ++     P++V +T+++K                V K     PD   YNT
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G CK G +++ K   ++M  K +KPNV TY + I G+C A +   A+R FIEM+D G
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + PN V    ++D  CK+G   +A +    M+  GV PD  T++ L+ G    G++  A 
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAM 637

Query: 246 ELFVSMESMG 255
            +F  +   G
Sbjct: 638 GVFSELLDKG 647



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ I   M +     P V  +N ++    K    +   S    + + GL P++YT+   
Sbjct: 495 EAIKILGVM-KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAF 553

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I+ +C+ G +         +L S   P+ V  T LI   CK                   
Sbjct: 554 IHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGV 613

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T++ +I GL K G + +A  +F ++ DK + P+V TYTS+I   C   D   A  
Sbjct: 614 LPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFE 673

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  +M  +G+ PN+VT+N +++ LCK G++ +A  L D + + G+  ++ TY+T++ G+C
Sbjct: 674 LHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYC 733

Query: 237 LTGRVNHAKELFVSMESMG 255
            +  +  A +LF  M+ +G
Sbjct: 734 KSANLTEAFQLFHGMKLVG 752



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 14/190 (7%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
            + PD+YT++ LIN +C++G+V  G  VL              F    K C P+ +TY+ 
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVL--------------FDMEEKGCIPNLVTYSV 272

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I GLC+ G VD+A EL   M +K + P+   Y ++I GFC      E K +  EM   G
Sbjct: 273 VIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMG 332

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           ++P+ V +  +++   K   +  A  + + M    ++ + FTY  L+ G C  G +  A+
Sbjct: 333 LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAE 392

Query: 246 ELFVSMESMG 255
           +LF  M  MG
Sbjct: 393 DLFSEMTMMG 402



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV----------LGRILR 99
           K  D+++  +K +N +     +    ILI+ + K G ++    V          +G    
Sbjct: 142 KILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACC 201

Query: 100 SCFTPDVV----------TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
           +  + D++           +  ++    PD  TY  +I+  C+ G V++ K +   M++K
Sbjct: 202 NSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK 261

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
              PN+VTY+ VI G C A D +EA  L   M ++G+ P+   +  ++D  C+  +  E 
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGF 235
            S+LD M   G++PD   Y  L++GF
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGF 347



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 20/238 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH------GF 91
           +++ ++    K+ +      LF  +   G+ PD + +  LI+  CK G          G 
Sbjct: 724 TYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGM 783

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCK--------------PDAITYNTIIDGLCKQGFVD 137
           V  G      F   +  F  L K+ +              P+ +TY  +I+  C  G + 
Sbjct: 784 VEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIK 843

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A++LF++M+ +NV PNV+TYTS++ G+      +E   LF EM+ +G++P+ + ++V++
Sbjct: 844 EAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMV 903

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D   K G   +A  L+D M+  GV      Y  L+D  C    ++   ++   +E  G
Sbjct: 904 DAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQG 961



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 23/222 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F  M+    +  P  +FN ++    K         L + +    + P+  T++IL
Sbjct: 775 KALSLFLGMVEEGIASTP--AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTIL 832

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I   C +G +     +   + +    P+V+T+TSL+                     +  
Sbjct: 833 IEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGI 892

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KPD + ++ ++D   K+G   KA +L   M  + V      YT +I   C  N+ +E  +
Sbjct: 893 KPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLK 952

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           +  E+  QG + ++ T   ++    + G+ DEA  +L+ M++
Sbjct: 953 VLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 49/245 (20%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD--TVLSLFKRLNSTGLFP-DLYTHSILIN 79
           + +++   P P  ++  +++   + +N+  D   +   F  +NS  +F  +L T SIL  
Sbjct: 57  WQFLIESSPLPNKLNP-DVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSL 115

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP--------DAITYNTIIDGLC 131
             C  G   +   VL R++ +   P V    S+IK  K           + +  +ID   
Sbjct: 116 ILCNSGLFGNAANVLERMIDT-RNPHVKILDSIIKCYKEINGSSSSSSVVVFEILIDIYR 174

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+GF+++A  +FL  K       +    S+ +     N      +++  M+         
Sbjct: 175 KKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLG-------- 226

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
                                        + PD +TY  L++ +C  G+V   K +   M
Sbjct: 227 ----------------------------AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDM 258

Query: 252 ESMGC 256
           E  GC
Sbjct: 259 EEKGC 263


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P+     +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 78  LTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 137

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 138 DIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYS 197

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 198 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N +   LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 258 SLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETA 317

Query: 245 KE 246
            E
Sbjct: 318 FE 319



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 20/248 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +FD + +    P  VS FN ++    +    D    L   ++++G+
Sbjct: 136 EGDIRL-----AQSVFDAITKWGLRPSVVS-FNTLMNGYIRLGDLDEGFRLKNAMHASGV 189

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT              T+I
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFT--------------TLI 235

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK G VD A E++ +M  +++ P+++TY ++  G C   D  +A  L  EM  +G++
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLK 295

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+ +T+  ++D  CK G M+ A      MIQ  +R D   Y  L+ G C  GR   A+++
Sbjct: 296 PDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 355

Query: 248 FVSMESMG 255
              M S+G
Sbjct: 356 LREMLSVG 363


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 42/285 (14%)

Query: 2   RLKSSGE-GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
           +L+S  E G ++   P + L   D  L      P +  +N ++  + K+K  +    L+ 
Sbjct: 210 KLQSDSEQGSLSQRAPLQLLRRVDGKLLQ----PNLVMYNTIIDSMCKDKLDNDAFDLYS 265

Query: 61  RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
            + S  +FPD+ T++ LIN FC +G++     +  ++      PDV TF  L+       
Sbjct: 266 EMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG 325

Query: 116 ----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                            KPD +TYN+++D  C    V+KAK +F  M  + V  NV +Y+
Sbjct: 326 RVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYS 385

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM--- 216
            +I  FC     ++A +LF EM  + + PNV+T++ ++D LCK+G++  A  L D M   
Sbjct: 386 IMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDR 445

Query: 217 -------------IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
                           G+RP+ FTY  L+DG C  GR+  A+ +F
Sbjct: 446 GQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIF 490



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 131/260 (50%), Gaps = 37/260 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N ++            + LF ++ S  + PD+YT +IL++ FCK GRV      
Sbjct: 274 PDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNG 333

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKPDAI--------------TYNTIIDGLCK 132
           L  +++    PDVVT+ SL+       +V K  +I              +Y+ +I+  CK
Sbjct: 334 LAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCK 393

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC------YANDWNEAKR---------- 176
              VD+A +LF +M  K + PNV+TY+S+I G C      YA + N+             
Sbjct: 394 IKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIIT 453

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ DQG++PN+ T+ +++D LCK G++++A ++ + ++  G      TY  ++ GFC
Sbjct: 454 LTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFC 513

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G  + A  L   M+   C
Sbjct: 514 NKGLFDEAMTLLSKMKDNCC 533



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 90/142 (63%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K+ +P+ + YNTIID +CK    + A +L+ +M  K + P+V TY ++I GFC      +
Sbjct: 235 KLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKD 294

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  LF +M  + + P+V TFN+++D  CK G++ EA + L +M++ G++PD  TYN+L+D
Sbjct: 295 AIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMD 354

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            +CL   VN AK +F +M   G
Sbjct: 355 RYCLVNEVNKAKSIFNTMSHRG 376



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 21/221 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-- 113
           L L +R++   L P+L  ++ +I+  CK    +  F +   ++     PDV T+ +LI  
Sbjct: 226 LQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALING 285

Query: 114 -------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                              +   PD  T+N ++D  CK+G V +AK     M  + +KP+
Sbjct: 286 FCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD 345

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           VVTY S++  +C  N+ N+AK +F  M  +GV  NV +++++++  CK   +D+A  L  
Sbjct: 346 VVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFK 405

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            M    + P+  TY++L+DG C +GR+++A EL   M   G
Sbjct: 406 EMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRG 446



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 3/199 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  IF+ M     +   V S++IM+    K K  D  + LFK ++   +FP++ T+S 
Sbjct: 363 NKAKSIFNTMSHRGVTAN-VRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSS 421

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQG 134
           LI+  CK GR+S+   +   +      PD++T T  +K    +P+  TY  +IDGLCK G
Sbjct: 422 LIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGG 481

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            ++ A+ +F  +  K     V TYT +I GFC    ++EA  L  +M D    PN VT+ 
Sbjct: 482 RLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYE 541

Query: 195 VIMDELCKNGKMDEASSLL 213
           +I+  L  N + D+A +  
Sbjct: 542 IIIRSLFDNDENDKAENFF 560


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 19/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
            E++ +F  M + H   P V +FN +L  L K    +    ++  + ST G+ PD +T +
Sbjct: 166 QESIKVFTIM-KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFN 224

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI  FC  G V  GF +           D+  F      C+PD +TYNT++DGLC+ G 
Sbjct: 225 ILIRGFCMNGMVDDGFRIFN---------DLSRFG-----CEPDVVTYNTLVDGLCRAGK 270

Query: 136 VDKAKELFLKMKDKNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V  A  +   M  K+V   PNVVTYT++IRG+C   +  +A  +F EM++QG++ N +T+
Sbjct: 271 VTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITY 330

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           N ++  LC+  K ++   +L+     G   PD  T+NTL+   C  G ++ A ++F  M 
Sbjct: 331 NTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMS 390

Query: 253 SM 254
            +
Sbjct: 391 EL 392



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 31/270 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  ++D ML  +   P   +FNI++     N   D    +F  L+  G  PD+ T++ 
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNT 260

Query: 77  LINCFCKMGRVSHGF-VVLGRILRSC-FTPDVVTFTSLIK-VC----------------- 116
           L++  C+ G+V+  + VV G   +S    P+VVT+T+LI+  C                 
Sbjct: 261 LVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVN 320

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWN 172
              K + ITYNT+I GLC+    +K K++      D    P+  T+ +++   C+A + +
Sbjct: 321 QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLD 380

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH-------GVRPDA 225
           +A ++F  M +  +QP+  T++ ++  LC+ G  ++A  LLD +++        G +P  
Sbjct: 381 DALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLV 440

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             YN +    C TG+   A++ F  +   G
Sbjct: 441 AAYNPIFKYLCETGKTKKAEKAFRQLMRRG 470



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           + K +A  +N+++    + G   ++ ++F  MK   V P+VVT+ S++         N A
Sbjct: 144 IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMA 203

Query: 175 KRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           K+++ EM+   GV P+  TFN+++   C NG +D+   + + + + G  PD  TYNTL+D
Sbjct: 204 KKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVD 263

Query: 234 GFCLTGRVNHA 244
           G C  G+V  A
Sbjct: 264 GLCRAGKVTVA 274



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 27/218 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++ C     + D  L +F+R++   + PD  T+S L+   C+ G       +
Sbjct: 361 PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDL 420

Query: 94  LGRILR--------------SCFTP-------------DVVTFTSLIKVCKPDAITYNTI 126
           L ++L               + + P                 F  L++    D  +Y T+
Sbjct: 421 LDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTL 480

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I G CK+G  +   EL + M  K+  P+  TY S+I G  + +    A +   +M+    
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSH 540

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +PN  TF+ I+ +L + G+  E++SL+ LM+   +R +
Sbjct: 541 RPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIRQN 578



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 4/139 (2%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKN---VKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +Y ++++ L +   ++ A+     ++ ++   VK     + S++R F  A  + E+ ++F
Sbjct: 113 SYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVF 172

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCL 237
             M   GV P+VVTFN ++  L K G+ + A  + D M+  +GV PD FT+N L+ GFC+
Sbjct: 173 TIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCM 232

Query: 238 TGRVNHAKELFVSMESMGC 256
            G V+    +F  +   GC
Sbjct: 233 NGMVDDGFRIFNDLSRFGC 251



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 33/247 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N +   L +          F++L   G   D  ++  LI   CK G    G+ +
Sbjct: 438 PLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGT-QDPPSYKTLIMGHCKEGTFESGYEL 496

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +LR  F PD  T+ SLI                        +P++ T+++I+  L +
Sbjct: 497 LVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLE 556

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG   ++  L   M DKN++ N+   T  +R    A   ++A +L   +  +G       
Sbjct: 557 QGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKG------- 609

Query: 193 FNVIMDE----LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V M+E    LC   K+ + S LL   ++     D    NT++   C   +++ A  L+
Sbjct: 610 YSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLY 669

Query: 249 VSMESMG 255
             +  MG
Sbjct: 670 YKLVEMG 676


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG---RVSHG 90
           P V +FN+++  L K    +    + + +   G  P++ +++ LI+ +CK+G   ++   
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 91  FVVLGRILRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDG 129
             VL  ++ +  +P++ TF  LI             KV K        P+ ITYN++I+G
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LC  G +++A  +  KM    V+PN++TY S+I GFC      EA  +F  +  QG +P 
Sbjct: 341 LCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPT 400

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
              +N+++D  CK GK+D+  +L + M + G+ PD  TYN L+ G C  G +  AK+LF 
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460

Query: 250 SMESMG 255
            + + G
Sbjct: 461 QLTNKG 466



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 25/239 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           +M+  L +N+  D V  L+K +    + P+++T +++IN  CK G+++    V+  +   
Sbjct: 194 LMVALLKQNRSAD-VEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVY 252

Query: 101 CFTPDVVTFTSLI----------KVCKPDAI--------------TYNTIIDGLCKQGFV 136
            ++P+VV++ +LI          K+ K DA+              T+N +IDG  K   +
Sbjct: 253 GYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNL 312

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             + ++F +M D++V PNV+TY S+I G C     NEA  +  +M+  GVQPN++T++ +
Sbjct: 313 PGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSL 372

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  CKNG M EA  + D +   G RP    YN L+D +C  G+++    L   ME  G
Sbjct: 373 INGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 125/240 (52%), Gaps = 22/240 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FNI++    K+ +    L +FK +    + P++ T++ LIN  C  G+++    +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGM 353

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++ +   P+++T+ SLI   CK                    P    YN +ID  CK
Sbjct: 354 RDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCK 413

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D    L  +M+ + + P+V TY  +I G C   +   AK+LF ++ ++G+ P++VT
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVT 472

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+++M+  C  G+  +A+ LL  M + G++P   TYN ++ G+C  G +  A  +   ME
Sbjct: 473 FHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQME 532



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 24/233 (10%)

Query: 47  AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV 106
           A N  ++     FKR    G      +   L+    K  R +    +   ++R    P+V
Sbjct: 164 ANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNV 223

Query: 107 VTFTSLIK-VCK--------------------PDAITYNTIIDGLCK---QGFVDKAKEL 142
            TF  +I  +CK                    P+ ++YNT+IDG CK    G + KA  +
Sbjct: 224 FTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAV 283

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +M +  V PN+ T+  +I GF   ++   + ++F EM+DQ V PNV+T+N +++ LC 
Sbjct: 284 LKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCN 343

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            GK++EA  + D M+  GV+P+  TY++L++GFC  G +  A ++F S++  G
Sbjct: 344 GGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQG 396



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 22/233 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ + D M+     P  ++  +++ G   KN      L +F  +   G  P    +++
Sbjct: 348 NEAIGMRDKMVSAGVQPNLITYHSLING-FCKNGMMKEALDMFDSVKGQGTRPTTRMYNM 406

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+ +CK+G++  GF +   + R    PDV T+  LI  +C+                  
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG 466

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD +T++ +++G C +G   KA  L  +M    +KP  +TY  +++G+C   +   A  
Sbjct: 467 LPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATN 526

Query: 177 LFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
           +  +M  ++ ++ NV ++NV++    + GK+++A+ LL+ M++ G+ P+  TY
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++  L +N + +    LF +L + GL PDL T  IL+  +C  G      ++
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAML 492

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
           L  + +                 KP  +TYN ++ G CK+G +  A  +  +M K++ ++
Sbjct: 493 LKEMSKMGL--------------KPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLR 538

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
            NV +Y  +++G+       +A  L  EM+++G+ PN +T+ ++ +E+   G
Sbjct: 539 MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKG 590



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 25/206 (12%)

Query: 57  SLFKRLNSTGLFPDL----YTHSI--------------LINCFCKMGRVSHGFVVLGRIL 98
            LF++L S+ L PDL    YT  +              L++      R S     L   +
Sbjct: 69  ELFRQLISSELNPDLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIRSFLDGFV 128

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK-----ELFLKMKDKNVKP 153
           R+     V +    I +C  D +  N+II  +    + + ++     E F +      K 
Sbjct: 129 RNGSDHQVHSIFHAISMC--DNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKL 186

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + ++   ++      N   + + L+ EM+ + +QPNV TFNV+++ LCK GKM++A  ++
Sbjct: 187 SAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTG 239
           + M  +G  P+  +YNTL+DG+C  G
Sbjct: 247 EDMKVYGYSPNVVSYNTLIDGYCKLG 272


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  + K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEG 139

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 140 DIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 199

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C +   + A  ++ +M+ Q
Sbjct: 200 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQ 259

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 260 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 319

Query: 245 KE 246
            E
Sbjct: 320 FE 321



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 23/229 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGR 245

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L    +PD++T+ +LI                     K  KPD ITY T
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 305

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C    + +A+++  EM+  G
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAG 365

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++P+  T+ +I++E CK G +   S LL  M + G  P   TYN L++G
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 181

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+ +
Sbjct: 242 KSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREM 361

Query: 252 ESMG 255
            S G
Sbjct: 362 LSAG 365



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 158 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 217

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A +L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 278 KGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 337

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 338 YTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397

Query: 253 SMG 255
             G
Sbjct: 398 RDG 400


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L  L K +       L   +   G+ PDL T + LI+ +C  G++     +
Sbjct: 49  PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 108

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +L     PD+VT+ +LI  +C+                    P+ +TY+ +ID  C+
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V+ A     +M +K + PN++TY S+I+G+C + + ++ ++   +MM   V P+++T
Sbjct: 169 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 228

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    K  KM +A  LL++M +  V+PD  TYN L++GF + G V  A  +F  M 
Sbjct: 229 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 288

Query: 253 SMG 255
           + G
Sbjct: 289 AKG 291



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 120/217 (55%), Gaps = 21/217 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK- 114
           ++  + +   GL PD   ++++I  FC+ G +S    V   ++     PDVVT+ +L+  
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 115 VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           +CK                    PD  T+ T+I G C +G +DKA +LF  M ++ ++P+
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           +VTY ++I G C   D ++A  L+ +M  + + PN VT+++++D  C+ G++++A   LD
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 180

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            MI  G+ P+  TYN+++ G+C +G V+  ++    M
Sbjct: 181 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 217



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    + +++G   +       L +   +   G  PD+ T++ L+N  CK  R+     +
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +      PD+ TFT+LI                     +  +PD +TYNT+IDG+C+
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +DKA +L+  M  + + PN VTY+ +I   C      +A     EM+++G+ PN++T
Sbjct: 134 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 193

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N I+   C++G + +    L  M+ + V PD  TYNTL+ G+    +++ A +L   ME
Sbjct: 194 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 253

Query: 253 S 253
            
Sbjct: 254 K 254



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL +FD ML     P  V+ +N ++  + +    D    L+  ++S  +FP+  T+SI
Sbjct: 103 DKALQLFDTMLNQRLRPDIVT-YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G+V   F  L  ++     P++              +TYN+II G C+ G V
Sbjct: 162 LIDSHCEKGQVEDAFGFLDEMINKGILPNI--------------MTYNSIIKGYCRSGNV 207

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            K ++   KM    V P+++TY ++I G+   +  ++A +L   M  + VQP+VVT+N++
Sbjct: 208 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNML 267

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G + EA  + + M   G+ PD +TY ++++G    G    A +L   M   G
Sbjct: 268 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%)

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM   G+ P+ V + +++   C+ G M +A  + D M+  G  PD  TYNTLL+G C   
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 240 RVNHAKELFVSMESMG 255
           R+  A+ L   M   G
Sbjct: 66  RLLDAEGLLNEMRERG 81


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + + + L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD AKE++ +M  +++ P+++TY ++I G C   D  +A  L  +M  +G++P+ +
Sbjct: 259 KNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++B  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESM 254
            S+
Sbjct: 379 LSV 381



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D     F  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD ITY T+IBG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+   ++P+  T
Sbjct: 330 EGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS   +M G + +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVSXNTLMNGYI-RLGDLDEGFRLKSVMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++         +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKE 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L   M  K +KP+ +TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+   ++PD  
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  ++ NT+++G  + G +D+   L   
Sbjct: 157 DI--------RVAQSVF--DAITKWGL----RPSVVSXNTLMNGYIRLGDLDEGFRLKSV 202

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V+P+V TY+ +I G C  +  ++A   F EM+ +G+ PN VTF  ++D  CKNG+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A +L   M   G
Sbjct: 263 VDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKG 312


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 26/265 (9%)

Query: 17  NEALCIFDYM----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +  L  +DY+    + M+ SP  +S FN+++  L K    D  + +F+ +      PD Y
Sbjct: 165 HRGLEFYDYVVNSNMNMNISPNGLS-FNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGY 223

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
           T+  L++  CK  R+    ++L  +     +P  V +  LI                   
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNM 283

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             K C P+ +TYNT+I GLC +G +DKA  L  +M      PN VTY ++I G       
Sbjct: 284 FLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +  RL I M ++G + N   ++V++  L K GK +EA +L   M + G RP+   Y+ +
Sbjct: 344 MDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAV 403

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DG C  G+ N AKE+   M S GC
Sbjct: 404 IDGLCREGKPNEAKEILNGMISSGC 428



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D M     SP PV  +N+++  L K      V  L   +   G FP+  T++ 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNT 297

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C  G++     +L R++ S               C P+ +TY T+I+GL KQ   
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSS--------------KCIPNDVTYGTLINGLVKQRRA 343

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
                L + M+++  + N   Y+ +I G        EA  L+ +M ++G +PN+V ++ +
Sbjct: 344 MDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAV 403

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LC+ GK +EA  +L+ MI  G  P+ +TY++L+ GF  TG    A +++  M+  GC
Sbjct: 404 IDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC 463



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L      D  +SL +R+ S+   P+  T+  LIN   K  R   G  +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARL 349

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +    +  +   ++ LI                     K C+P+ + Y+ +IDGLC+
Sbjct: 350 LISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCR 409

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  ++AKE+   M      PNV TY+S+++GF       EA +++ EM + G   N   
Sbjct: 410 EGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFC 469

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++V++D LC  G++ EA  +   M+  G++PD   Y++++ G C  G ++ A +L+  M
Sbjct: 470 YSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 17/221 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +++++  L K    +  ++L+K++   G  P++  +S +I+  C+ G+ +    +L  ++
Sbjct: 365 YSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMI 424

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            S               C P+  TY++++ G  K G  ++A +++ +M +     N   Y
Sbjct: 425 SSG--------------CLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCY 470

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI- 217
           + +I G C      EA  ++ +M+  G++P+ V ++ ++  LC  G MD A  L   M+ 
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLC 530

Query: 218 --QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +   +PD  TYN LLDG C+   V+ A +L   M   GC
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGC 571



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 39/253 (15%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PNEA  I + M+      P V +++ ++    K    +  + +++ ++ TG   + + +S
Sbjct: 413 PNEAKEILNGMIS-SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYS 471

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK 117
           +LI+  C +GRV    +V  ++L     PD V ++S+IK                  +C+
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQ 531

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD +TYN ++DGLC Q  V +A +L   M D+   P+V+T  + +      +D 
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDS 591

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            E  R F+E +              +  L K  ++  A  ++++M+   + P   T+  +
Sbjct: 592 CEEGRSFLEEL--------------VARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMI 637

Query: 232 LDGFCLTGRVNHA 244
           +   C   ++N A
Sbjct: 638 VPEICKPKKINAA 650


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 14/226 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   S+N +L    K K  D  +   + + S G +PD+ T++ ++   CK G+V  
Sbjct: 150 HGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDA 209

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +L ++                K C P  ITYNT+IDGL K G  D+A EL  +M+ K
Sbjct: 210 AVELLNQLSS--------------KGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK 255

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            +KP+V+TY+S+I G        EA + F ++   GV+PN  T+N IM  LCK  + D A
Sbjct: 256 GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              L  MI  G +P   +Y  L++G    G    A EL   + S G
Sbjct: 316 IDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 14/189 (7%)

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
           +PD+ T++ILI   C    V     +L  +                + CKPD +TYN ++
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGS--------------RGCKPDVVTYNVLV 58

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           +G+CK+G +D+A +    M     +PNV+T+  ++R  C    W +A++L  EM+ +G  
Sbjct: 59  NGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P+VVTFN++++ LC+ G +  A  +L+ M  HG  P++ +YN LL GFC   +++ A + 
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 248 FVSMESMGC 256
              M S GC
Sbjct: 179 LEIMVSRGC 187



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++            + L   + S G  PD+ T+++L+N  CK GR+      
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +      P+V+T   ++                     K C P  +T+N +I+ LC+
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A ++  KM      PN ++Y  ++ GFC     + A +    M+ +G  P++VT
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LCK+GK+D A  LL+ +   G  P   TYNT++DG    G+ + A EL   M 
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 253 SMG 255
             G
Sbjct: 254 GKG 256



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  + K    D  +     + S G  P++ TH+I++   C  GR      +
Sbjct: 49  PDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKL 108

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  ++R   +P VVTF  LI                       C P++++YN ++ G CK
Sbjct: 109 LTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCK 168

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  +D+A +    M  +   P++VTY +++   C     + A  L  ++  +G  P ++T
Sbjct: 169 EKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLIT 228

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D L K GK D+A  LL  M   G++PD  TY++L+ G    G+V  A + F  +E
Sbjct: 229 YNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVE 288

Query: 253 SMG 255
             G
Sbjct: 289 GFG 291



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 21/248 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           + S P V + NI+L  +     +     L   +   G  P + T +ILIN  C+ G +  
Sbjct: 80  YGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGR 139

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
              +L ++     TP+ +++  L+                     + C PD +TYNT++ 
Sbjct: 140 AIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLT 199

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LCK G VD A EL  ++  K   P ++TY +VI G       ++A  L  EM  +G++P
Sbjct: 200 ALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKP 259

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +V+T++ ++  L + GK++EA      +   GV+P+AFTYN+++ G C   + + A +  
Sbjct: 260 DVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFL 319

Query: 249 VSMESMGC 256
             M S GC
Sbjct: 320 AYMISKGC 327



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 69/116 (59%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E+  +  +K   P+V+TYT +I   C  +   +A +L  EM  +G +P+VVT+NV+++ +
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           CK G++DEA   L+ M  +G +P+  T+N +L   C TGR   A++L   M   GC
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGC 117


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD  L+     P V ++N ++  L    + D  L L K +   GLFPD++T++I
Sbjct: 372 SEAFLLFD-ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK--------------- 117
           L+N   K+G VS        +L     PD   + + I    K+                 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ITYN  +  LC+QG  ++A +L   M    + P+ VTYTS+I GF       +A+
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAR 550

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM+ +GV P+VVT+ V++        +D A      M++  V  +  TYN +++G 
Sbjct: 551 EVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+T R++ A + F  ME  G
Sbjct: 611 CMTRRMDEAYKYFDEMEEKG 630



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N+ +  L +  +++    L + + S GL PD  T++ +IN F K G +     
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L     P VVT+T LI                   +  +D A   F KM +K+V 
Sbjct: 552 VFNEMLSKGVAPSVVTYTVLIH--------------AHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            NV+TY ++I G C     +EA + F EM ++G+ PN  ++ ++++E C  G  +EA  L
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRL 657

Query: 213 LDLMIQHGVRPDAFTYNTLL 232
              M+   ++PD+FT++  L
Sbjct: 658 YREMLDRKIQPDSFTHSVFL 677



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+      P V ++N ML    K    D  L L   +   G +P+  T+++L+N   K G
Sbjct: 205 MMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKG 264

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
            +     ++  +L S       T+  LI   C+                    P   TYN
Sbjct: 265 ELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYN 324

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T++ GLCK   V   +  F  M      P++V++ S++ G+C     +EA  LF E+  +
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P V+T+N ++  LC  G +D A  L   M   G+ PD FTY  L++G    G V+ A
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444

Query: 245 KELFVSMESMG 255
           +  F  M S G
Sbjct: 445 RGFFNEMLSKG 455



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L+K    +    L + + ++GL    YT++ LIN FC+ G     F +
Sbjct: 248 PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDL 307

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           +  ++     P + T+ +L+  +CK                    PD +++N+++ G C+
Sbjct: 308 VEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCR 367

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  LF ++K +++ P V+TY ++I G C     + A RL  EM DQG+ P++ T
Sbjct: 368 TGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFT 427

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + ++++   K G +  A    + M+  G++PD F YNT + G
Sbjct: 428 YTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG 469



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           L +FD M+R +   P V + N +L  L          +++  +   G+ P + T++ +++
Sbjct: 165 LLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            +CK GRV     +L  +                + C P+ +TYN +++GL K+G +++A
Sbjct: 224 SYCKEGRVDQALELLSEMQE--------------RGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           K L  +M +  +  +  TY  +I GFC    + EA  L  EM+++   P + T+N +M  
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           LCK  ++         M++    PD  ++N+LL G+C TG ++ A  LF
Sbjct: 330 LCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLF 378



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 77/134 (57%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD    N I+  L  +  + KAK ++  M+   +KP VVTY +++  +C     ++A  L
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM ++G  PN VT+NV+++ L K G++++A  L++ M+  G+   A+TYN L++GFC 
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 238 TGRVNHAKELFVSM 251
            G    A +L   M
Sbjct: 298 KGLFVEAFDLVEEM 311



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%)

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +F KM    + P+V     ++R     N  ++AK ++  M   G++P VVT+N ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G++D+A  LL  M + G  P+  TYN L++G    G +  AK L   M + G
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M+  G+ P+V   N I+  L     + +A ++  +M Q G++P   TYNT+LD +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GRV+ A EL   M+  GC
Sbjct: 227 KEGRVDQALELLSEMQERGC 246


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 29/250 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  V S NI++  L KNK   D+ L +F+ + + G  PD YT+  LIN  C++G +S   
Sbjct: 152 PSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAK 211

Query: 92  VVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGL 130
            +   + +  F+  VVT+TSLI  +C+                    P+  TY++++DGL
Sbjct: 212 ELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGL 271

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G   +A +L   M  K+  PN+VTY+++I G C      EA  +   M  QG++PN 
Sbjct: 272 CKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNA 331

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             +  I+  LC  G   EA++ +D M+  G+ P+  ++       N ++ G C       
Sbjct: 332 GLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPR 391

Query: 244 AKELFVSMES 253
           A +L++SM +
Sbjct: 392 AFQLYLSMRT 401



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 14/240 (5%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ +F  M      P   +   I L  L +  H    +  ++ +   G+   + + +
Sbjct: 101 PLDAIRVFHKMEGFQLRPTQKAYLTI-LDILVEENHVKRAIGFYREMRELGIPSSVVSLN 159

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI   CK        +   RI +    P+        + C+PD+ TY T+I+GLC+ G 
Sbjct: 160 ILIKALCKNKETVDSAL---RIFQE--MPN--------RGCQPDSYTYGTLINGLCRLGN 206

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +AKELF +M+ K    +VVTYTS+I G C +N+ +EA  L  EM    ++PNV T++ 
Sbjct: 207 ISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSS 266

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +MD LCK G   +A  LL++M +    P+  TY+TL++G C   ++  A E+   M   G
Sbjct: 267 LMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQG 326



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 103/231 (44%), Gaps = 29/231 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M R +   P V +++ ++  L K  H    + L + ++     P++ T+S 
Sbjct: 243 DEAIGLLEEMKR-NDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYST 301

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           LIN  CK  ++     +L R+      P+   +  +I  +C                   
Sbjct: 302 LINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGG 361

Query: 117 -KPDAITY-------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
             P+  ++       N ++ GLC      +A +L+L M+ + +   + T+  +++ FC  
Sbjct: 362 ISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKR 421

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
            D ++A R+  EM+  G  P+   +NV++  L    K+ EA+  L + +Q 
Sbjct: 422 GDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQ 472



 Score = 37.4 bits (85), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D  T+  II  L        A+ +  +MK +        + S+ RG+   +   +A R
Sbjct: 47  RHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIR 106

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M    ++P    +  I+D L +   +  A      M + G+     + N L+   C
Sbjct: 107 VFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALC 166

Query: 237 LTGR-VNHAKELFVSMESMGC 256
                V+ A  +F  M + GC
Sbjct: 167 KNKETVDSALRIFQEMPNRGC 187


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  IF  MLR    P  VS F+ ++   ++N+H D  L  F+ +   GL PD   +++
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVS-FSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 77  LINCFCKMGRVSHGFVVLGRIL-RSCFT-------------------------------- 103
           L++ +C+ G +     +   +L + C                                  
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 104 --PDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
             PD  TFT+LI                     +  KPD + YNT+IDG CK G ++KA 
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL+  M  + + PN +TY  +I  +C     +EA RL+  M+++G++P +VT N ++   
Sbjct: 419 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 478

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C++G   +A   L  MI  GV PD  +YNTL++GF     ++ A      ME  G
Sbjct: 479 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEG 533



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K   Y     +   + + GL PD  T++ L+   C+    S    +
Sbjct: 186 PSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEI 245

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
            G +LR    PD+V+F+SLI V                       PD + Y  ++ G C+
Sbjct: 246 FGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCR 305

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A ++  +M ++    +V+ Y +++ G C      +A +LF EM+++G  P+  T
Sbjct: 306 NGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYT 365

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   C++G M +A SL   M Q  ++PD   YNTL+DGFC  G +  A EL+  M 
Sbjct: 366 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI 425

Query: 253 S 253
           S
Sbjct: 426 S 426



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V + NIM+  L K+  +D V S    +   G++ D+ T++ LI  +C+ G +   F ++ 
Sbjct: 118 VYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMN 177

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +                K  KP   TYN II+GLCK+G   +AK + ++M +  + P+ 
Sbjct: 178 SMAD--------------KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDT 223

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY +++   C  ++++EAK +F EM+ QGV P++V+F+ ++    +N  +D+A      
Sbjct: 224 TTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRD 283

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M + G+ PD   Y  L+ G+C  G +  A ++   M   GC
Sbjct: 284 MKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGC 324



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 15/227 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F  M + +  P  V+ +N ++    K    +    L+  + S  +FP+  T+ IL
Sbjct: 381 KALSLFGTMTQRNIKPDIVA-YNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 439

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN +C +G VS  F +   ++               K  KP  +T NT+I G C+ G   
Sbjct: 440 INAYCSVGHVSEAFRLWDVMIE--------------KGIKPTLVTCNTVIKGYCRSGDSS 485

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA E   +M  K V P+ ++Y ++I GF   ++ ++A     +M  +G+ P+++T+NV+M
Sbjct: 486 KADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVM 545

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +  C+ G+M EA  +L  MI+ G+ PD  TY  L++G      +N A
Sbjct: 546 NGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 18/232 (7%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR       +++ N +LG L K    +    + + +  +G+  ++YT +I++N  CK G
Sbjct: 73  ILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDG 132

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELF 143
           +                  DV +F S ++      D +TYNT+I   C++G +++A E+ 
Sbjct: 133 KFD----------------DVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIM 176

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
             M DK +KP++ TY ++I G C    +  AK + IEM++ G+ P+  T+N ++ E C+ 
Sbjct: 177 NSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRR 236

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               EA  +   M++ GV PD  ++++L+  F     ++ A   F  M+  G
Sbjct: 237 DNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFG 288


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD  L+     P V ++N ++  L    + D  L L K +   GLFPD++T++I
Sbjct: 372 SEAFLLFDE-LKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK--------------- 117
           L+N   K+G VS        +L     PD   + + I    K+                 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD ITYN  +  LC+QG  ++A +L   M    + P+ VTYTS+I GF       +A+
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAR 550

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM+ +GV P+VVT+ V++        +D A      M++  V  +  TYN +++G 
Sbjct: 551 EVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+T R++ A + F  ME  G
Sbjct: 611 CMTRRMDEAYKYFDEMEEKG 630



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N+ +  L +  +++    L + + S GL PD  T++ +IN F K G +     
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L     P VVT+T LI                   +  +D A   F KM +K+V 
Sbjct: 552 VFNEMLSKGVAPSVVTYTVLIH--------------AHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            NV+TY ++I G C     +EA + F EM ++G+ PN  ++ ++++E C  G  +EA  L
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRL 657

Query: 213 LDLMIQHGVRPDAFTYNTLL 232
              M+   ++PD+FT++  L
Sbjct: 658 YREMLDRKIQPDSFTHSVFL 677



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+      P V ++N ML    K    D  L L   +   G +P+  T+++L+N   K G
Sbjct: 205 MMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKG 264

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
            +     ++  +L S       T+  LI   C+                    P   TYN
Sbjct: 265 ELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYN 324

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T++ GLCK   V   +  F  M      P++V++ S++ G+C     +EA  LF E+  +
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P V+T+N ++  LC  G +D A  L   M   G+ PD FTY  L++G    G V+ A
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMA 444

Query: 245 KELFVSMESMG 255
           +  F  M S G
Sbjct: 445 RGFFNEMLSKG 455



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  L+K    +    L + + ++GL    YT++ LIN FC+ G     F +
Sbjct: 248 PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDL 307

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           +  ++     P + T+ +L+  +CK                    PD +++N+++ G C+
Sbjct: 308 VEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCR 367

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  LF ++K +++ P V+TY ++I G C     + A RL  EM DQG+ P++ T
Sbjct: 368 TGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFT 427

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + ++++   K G +  A    + M+  G++PD F YNT + G
Sbjct: 428 YTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG 469



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           L +FD M+R +   P V + N +L  L          +++  +   G+ P + T++ +++
Sbjct: 165 LLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            +CK GRV     +L  +                + C P+ +TYN +++GL K+G +++A
Sbjct: 224 SYCKEGRVDQALELLSEMQE--------------RGCYPNDVTYNVLVNGLSKKGELEQA 269

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
           K L  +M +  +  +  TY  +I GFC    + EA  L  EM+++   P + T+N +M  
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           LCK  ++         M++    PD  ++N+LL G+C TG ++ A  LF
Sbjct: 330 LCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLF 378



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 77/134 (57%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD    N I+  L  +  + KAK ++  M+   +KP VVTY +++  +C     ++A  L
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM ++G  PN VT+NV+++ L K G++++A  L++ M+  G+   A+TYN L++GFC 
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 238 TGRVNHAKELFVSM 251
            G    A +L   M
Sbjct: 298 KGLFVEAFDLVEEM 311



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%)

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           +F KM    + P+V     ++R     N  ++AK ++  M   G++P VVT+N ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K G++D+A  LL  M + G  P+  TYN L++G    G +  AK L   M + G
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F +M+  G+ P+V   N I+  L     + +A ++  +M Q G++P   TYNT+LD +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GRV+ A EL   M+  GC
Sbjct: 227 KEGRVDQALELLSEMQERGC 246


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 56/278 (20%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P V +FNI++  L    +     +L K++   G  P + T++ L+N +CK GR      +
Sbjct: 982  PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 1041

Query: 94   LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
            +  ++      DV T+   I                     ++  P+ +TYNT+I+G  K
Sbjct: 1042 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 1101

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            +G +  A ++F +M   ++ PN VTY ++I G C+  D+ EA RL   M   G++ N VT
Sbjct: 1102 EGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 1161

Query: 193  FN-----------------------------------VIMDELCKNGKMDEASSLLDLMI 217
            +                                    V++D LCKNG +DEA  L+  M 
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221

Query: 218  QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + GV PD  TY++L++GFC  G +  AKE+   M   G
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 19   ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
            A  +F+ M +   SP  V+ +N ++G       ++  L L   + + GL  +  T+  L+
Sbjct: 1108 AAQVFNEMSKFDLSPNCVT-YNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLL 1166

Query: 79   NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
            N  CK  +    F +  R+L      D+V             I Y  +IDGLCK G +D+
Sbjct: 1167 NGLCKHEK----FELAKRLLERMRVNDMVV----------GHIAYTVLIDGLCKNGMLDE 1212

Query: 139  AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
            A +L   M    V P+V+TY+S+I GFC   +   AK +   M   G+  N + ++ ++ 
Sbjct: 1213 AVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIY 1272

Query: 199  ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              C++G + EA  +  +M  +G   D FT N L+   C  G++  A++    M  +G
Sbjct: 1273 NFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIG 1329



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 56/267 (20%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++ +++  L KN   D  + L   +   G+ PD+ T+S LIN FC++G +     ++ R+
Sbjct: 1196 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 1255

Query: 98   LRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFV 136
             RS    + + +++LI   C+                     D  T N ++  LC+ G +
Sbjct: 1256 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 1315

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT---- 192
             +A++    M    + PN +TY  +I G+    D   A   F +M+  G  P+  T    
Sbjct: 1316 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 1375

Query: 193  -------------------------------FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
                                           +N ++ E CK+G + EA +L D M+Q+ V
Sbjct: 1376 LKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNV 1435

Query: 222  RPDAFTYNTLLDGFCLTGRVNHAKELF 248
             PD++TY++LL G C  G+   A  LF
Sbjct: 1436 LPDSYTYSSLLTGLCRKGKAVTAVCLF 1462



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 19/233 (8%)

Query: 22   IFDYMLRMHP---SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
            IF  ++  +P   S P V  F++++    K    D  +  F+ +   G  P +YT ++++
Sbjct: 899  IFGALMDTYPLCNSIPSV--FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMIL 956

Query: 79   NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
                K  R    + +   +      P+V TF              N +I+GLC +G + K
Sbjct: 957  ASMVKDKRTELVWSLFREMSDKGICPNVGTF--------------NILINGLCVEGNLKK 1002

Query: 139  AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
            A  L  +M++    P +VTY +++  +C    +  A  L   M+ +G++ +V T+NV +D
Sbjct: 1003 AGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFID 1062

Query: 199  ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             LC N +  +A  LL  M +  + P+  TYNTL++GF   G++  A ++F  M
Sbjct: 1063 NLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEM 1115



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 118/242 (48%), Gaps = 23/242 (9%)

Query: 18   EALCIFDYM----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
            EAL + D+M    LR++       ++  +L  L K++ ++    L +R+    +      
Sbjct: 1142 EALRLLDHMEAAGLRLNEV-----TYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIA 1196

Query: 74   HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
            +++LI+  CK G +     ++G + +    PDV+T++SL              I+G C+ 
Sbjct: 1197 YTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSL--------------INGFCRV 1242

Query: 134  GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            G +  AKE+  +M    +  N + Y+++I  FC   +  EA +++  M   G   +  T 
Sbjct: 1243 GNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTC 1302

Query: 194  NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            NV++  LC++GK+ EA   L  M + G+ P++ TY+ +++G+   G   +A   F  M  
Sbjct: 1303 NVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIK 1362

Query: 254  MG 255
             G
Sbjct: 1363 CG 1364



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 14/239 (5%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +EA+ +FD M++ +  P   +  +++ G   K K    V      +    LFP+   ++ 
Sbjct: 1421 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 1480

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            L++   K G     F     +++    PD V F              N IID   ++G +
Sbjct: 1481 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAF--------------NAIIDSCSRRGQM 1526

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             KA + F  M+   V PN+ TY  ++ GF           L+  MM +G+ P+ +TF+ +
Sbjct: 1527 MKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSL 1586

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  L K+G  D    LL  MI  G   D FT+N L++ +  +G++  A +L   M ++G
Sbjct: 1587 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLG 1645



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 25   YMLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
            ++ R+H  P  V S  +N +L    K+ +    ++LF ++    + PD YT+S L+   C
Sbjct: 1391 FLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLC 1450

Query: 83   KMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            + G+      + G  + R    P+ V +T L+              DGL K G    A  
Sbjct: 1451 RKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLV--------------DGLSKAGHPKAAFY 1496

Query: 142  LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
             F +M  K   P+ V + ++I          +A   F  M   GV PN+ T+N+++    
Sbjct: 1497 FFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFS 1556

Query: 202  KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            K   +    SL   M++ G+ PD  T+++L+ G   +G
Sbjct: 1557 KKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSG 1594



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P ++++NI+L   +K +     LSL+  +   G+FPD  T   LI    K G    G  +
Sbjct: 1543 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 1602

Query: 94   LGRILRSCFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCK 132
            LG+++      D  TF  LI       K+ K              PD  TYN I +GL K
Sbjct: 1603 LGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNK 1662

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            +    ++  +  +M +  V P    Y ++I G C   D   A +L  EM   G   + V 
Sbjct: 1663 KSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 1722

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             + ++  L   GK ++A  +LD M++  + P   T+ TL+  FC   ++  A +L   ME
Sbjct: 1723 ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVME 1782

Query: 253  SMG 255
              G
Sbjct: 1783 LCG 1785



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 20/223 (8%)

Query: 16   PNEALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
            P  A   FD M++   HPS     ++  +L  L K  +         RL+      D   
Sbjct: 1350 PLNAFSFFDDMIKCGQHPS---FFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVM 1406

Query: 74   HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
            ++ L+   CK G +     +  +++++   PD  T++SL+               GLC++
Sbjct: 1407 YNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT--------------GLCRK 1452

Query: 134  GFVDKAKELF-LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A  LF   M    + PN V YT ++ G   A     A   F EMM +G  P+ V 
Sbjct: 1453 GKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVA 1512

Query: 193  FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            FN I+D   + G+M +A+     M   GV P+  TYN LL GF
Sbjct: 1513 FNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGF 1555



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 20   LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
            L ++  M+R    P  ++  +++LG L+K+   D  + L  ++   G   D +T +ILIN
Sbjct: 1565 LSLYSTMMREGIFPDKLTFHSLILG-LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILIN 1623

Query: 80   CFCKMGRVSHGFVVL--------------------GRILRSCFTPDVVTFTSLIK-VCKP 118
             + + G++   F ++                    G   +S F    V    +++    P
Sbjct: 1624 KYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIP 1683

Query: 119  DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
                Y T+I+G+C+ G +  A +L  +M+      + V  ++++RG  +     +A  + 
Sbjct: 1684 KHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVL 1743

Query: 179  IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
              M+   + P + TF  +M   C++ K+ EA  L  +M   G++ D   YN L+ G C  
Sbjct: 1744 DHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCAN 1803

Query: 239  GRVNHAKELFVSME 252
            G    A EL+  M 
Sbjct: 1804 GDSAAAFELYEEMR 1817



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 21/147 (14%)

Query: 61   RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------- 113
             + + G        S ++      G+     +VL  +LR    P + TFT+L+       
Sbjct: 1710 EMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDA 1769

Query: 114  ------------KVC--KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                        ++C  K D + YN +I G+C  G    A EL+ +M+ +++ PN+ TY 
Sbjct: 1770 KIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYA 1829

Query: 160  SVIRGFCYANDWNEAKRLFIEMMDQGV 186
             ++     AN+  + ++L  ++ ++G+
Sbjct: 1830 VLVDAISAANNLIQGEKLLTDLQERGL 1856


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 23/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL  F+ M+      P  ++FN +L  L K+  ++    +F       +  D+Y+  
Sbjct: 111 PEQALFYFNQMIG-RGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGN-VKLDVYSFG 168

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------- 116
           I+I   C++G +  GF VLG++     +P+VV +T+LI  C                   
Sbjct: 169 IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGEL 228

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
               +  TY  +I+G  K G      EL+ KMK   + PNV TY S+I   C     N A
Sbjct: 229 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNA 288

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM ++GV  NVVT+N ++  LC+  ++ EA  L+  M + G+ P+  +YNTL+DG
Sbjct: 289 FELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 348

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C  G ++ A  LF  M+S G
Sbjct: 349 YCSIGNLDKASSLFNQMKSSG 369



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 15/234 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +   M  M  SP  V    ++ GC  KN   +    LF ++    +  + YT+++LIN F
Sbjct: 186 VLGQMEEMGLSPNVVVYTTLIDGC-CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            KMG    G  +  ++  +   P+V T+ S+I  C              C  G ++ A E
Sbjct: 245 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC--------------CNDGKLNNAFE 290

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF +M+++ V  NVVTY ++I G C      EA+RL   M   G+ PN++++N ++D  C
Sbjct: 291 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYC 350

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +D+ASSL + M   G  P   TYN L+ GF          ++   ME+ G
Sbjct: 351 SIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 21/220 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK- 114
           + L++++  TG+ P++YT++ +I   C  G++++ F +   +       +VVT+ +LI  
Sbjct: 254 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGG 313

Query: 115 -------------VCK-------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                        +C+       P+ I+YNT+IDG C  G +DKA  LF +MK     P+
Sbjct: 314 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 373

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           + TY  +I GF  A +      +  EM  +G+ P+ VT+ ++MD L ++  +++A  +  
Sbjct: 374 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 433

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            M + G+  D + Y  L+ G C+ G +  A +LF S++ M
Sbjct: 434 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 473



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 15/215 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F+ M +     P ++++NI++   ++ K+   V  + + + + GL P   T++I
Sbjct: 356 DKASSLFNQM-KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 414

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   +   +   F +   + ++    D+                Y  +I GLC  G +
Sbjct: 415 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYI--------------YGVLIHGLCVVGDM 460

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +LF  + + ++KPN V Y ++I G+C       A RL  EM + G+ PNV ++N  
Sbjct: 461 KEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNST 520

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +  LCK+ K  EA  LL  MI+ G++P    +N +
Sbjct: 521 IQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +FD M R       V ++N ++G L + +       L  R+   GL P+L +++ 
Sbjct: 286 NNAFELFDEM-RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ +C +G +     +  ++  S  +P + T+  LI                     + 
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P  +TY  ++D L +   ++KA +++  M+   +  ++  Y  +I G C   D  EA 
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF  + +  ++PN V +N ++   CK G    A  LL  M ++G+ P+  +YN+ +   
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +   A+ L   M  +G
Sbjct: 525 CKDEKWTEAEVLLKDMIELG 544


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++  ++L  L +N   +  +  F+++   G  P+L   + LI+  CK G +   F +
Sbjct: 273 PDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 332

Query: 94  LGRILRSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLC 131
           L  ++R+ + P+V T T+LI                       + KP+  TY ++I G C
Sbjct: 333 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYC 392

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+  +++A+ LF +MK++ + PNV TYT++I G C A +++ A  L   M D+G +PN+ 
Sbjct: 393 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIY 452

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++D LCK  +  EA  LL+     G+  D  TY  L+   C    +  A   F  M
Sbjct: 453 TYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRM 512

Query: 252 ESMG 255
              G
Sbjct: 513 NKTG 516



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 133/290 (45%), Gaps = 60/290 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ +   M     SP  ++  N +L    ++   D   ++F  ++  G+ PD  +  +
Sbjct: 187 NEAVGMVMDMQNQGLSPSSIT-MNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKL 245

Query: 77  L-INCFCKMGRVSHGFVVLGRILRSCFTPDVVT--------------------------- 108
           + I CF + G++      L  +++  F PD  T                           
Sbjct: 246 MVIGCF-RDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDL 304

Query: 109 --------FTSLIK-VC--------------------KPDAITYNTIIDGLCKQGFVDKA 139
                   FTSLI  +C                    KP+  T+  +IDGLCK+G+ +KA
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 364

Query: 140 KELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
             LFLK+   ++ KPNV TYTS+I G+C  +  N A+ LF  M +QG+ PNV T+  +++
Sbjct: 365 FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 424

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             CK G  D A  L++LM   G RP+ +TYN ++D  C   R   A EL 
Sbjct: 425 GHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELL 474



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  ++R     P V ++  M+G   K    +    LF R+   GLFP++ T++ L
Sbjct: 363 KAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 422

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           IN  CK G     + ++  +    F P++ T+ ++I  +CK                   
Sbjct: 423 INGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGL 482

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D +TY  +I   CKQ  + +A   F +M     + ++     +I  FC      E++R
Sbjct: 483 EADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESER 542

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  ++  G+ P   T+  ++   CK G  D A      M +HG  PD+FTY +L+ G C
Sbjct: 543 LFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLC 602

Query: 237 LTGRVNHAKELFVSMESMG 255
               V+ A +L+ +M   G
Sbjct: 603 KKSMVDEACKLYEAMIDRG 621



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           + + GL P     SI +NC  ++  +  G +         +  +V    S+  VC PD+ 
Sbjct: 196 MQNQGLSPS----SITMNCVLEIA-IESGLID--------YAENVFDEMSVRGVC-PDSS 241

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++  ++ G  + G + +A      M  +   P+  T T ++   C     N A   F +M
Sbjct: 242 SFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKM 301

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +D G +PN++ F  ++D LCK G + +A  +L+ M+++G +P+ +T+  L+DG C  G  
Sbjct: 302 IDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWT 361

Query: 242 NHAKELFVSM 251
             A  LF+ +
Sbjct: 362 EKAFRLFLKL 371



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K         L  +  S GL  D  T++ILI   CK   +      
Sbjct: 449 PNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAF 508

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             R+ ++ F  D+     LI   C+                    P   TY ++I G CK
Sbjct: 509 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCK 568

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D A + F  MK     P+  TY S+I G C  +  +EA +L+  M+D+G+ P  VT
Sbjct: 569 EGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVT 628

Query: 193 FNVIMDELCKNGKMDEASSLLDL 215
              +  E CK  + D AS+++ L
Sbjct: 629 RVTLAYEYCK--RNDSASAMIVL 649



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P +IT N +++   + G +D A+ +F +M  + V P+  ++  ++ G        EA R 
Sbjct: 203 PSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRW 262

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ +G  P+  T  +I+  LC+NG ++ A      MI  G +P+   + +L+DG C 
Sbjct: 263 LSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCK 322

Query: 238 TGRVNHAKELFVSMESMG 255
            G +  A E+   M   G
Sbjct: 323 KGSIKQAFEMLEEMVRNG 340



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y    D L   G + KA E+   M               +R F      NEA  + ++M 
Sbjct: 153 YLVTADSLIANGNLQKAHEVMRCM---------------LRNFSEIGRLNEAVGMVMDMQ 197

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           +QG+ P+ +T N +++   ++G +D A ++ D M   GV PD+ ++  ++ G    G++ 
Sbjct: 198 NQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQ 257

Query: 243 HAKELFVSMESMG 255
            A      M   G
Sbjct: 258 EADRWLSGMIQRG 270


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 26/240 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++FN  +  L K         L  R+   G  P+ +T+ +L++  C+MG+V    ++
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362

Query: 94  LGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGLC 131
           L ++      P+VV F +LI                        C PD  TYNT+I GLC
Sbjct: 363 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 418

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G++  A+EL  +M+ K  +PNV+TYT +I  FC      EA+ +  EM  +G+  N V
Sbjct: 419 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 478

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N ++  LCK+ K+ +A ++   M   G +PD FT+N+L+ G C   +   A  L+  M
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 538



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 21/232 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            +N ++  L K++     L++F  ++S G  PD++T + LI   CK+ +      +   +
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 538

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
           L      + +T+ +LI                     + C  D ITYN +I  LC+ G +
Sbjct: 539 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 598

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K   LF  M  K + PN ++   +I G C   +   A     +M+ +G+ P++VT+N +
Sbjct: 599 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 658

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ LCK G+  EA +L D +   G+ PDA TYNTL+   C  G  + A  L 
Sbjct: 659 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLL 710



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K  +  +   L   +   G  P++ T++ILI+ FCK GR+     V
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +       + V +  LI                     K CKPD  T+N++I GLCK
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 524

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF--------------------------- 165
               ++A  L+  M  + V  N +TY ++I  F                           
Sbjct: 525 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 584

Query: 166 --------CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                   C A +  +   LF +MM +G+ PN ++ N++++ LC+ G +  A   L  MI
Sbjct: 585 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 644

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  TYN+L++G C TGR   A  LF  ++  G
Sbjct: 645 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 682



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 46/273 (16%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A  +   M  ++   P   S+N++L  L        V ++F  + S G+ P +YT  
Sbjct: 180 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 239

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++   C +  V     +L  + R                C P+AI Y T+I  L K G 
Sbjct: 240 VVMKALCLVNEVDSACALLKDMTRHG--------------CVPNAIVYQTLIHALSKVGR 285

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V++  +L  +M      P+V T+   I G C     +EA +L   M+ +G  PN  T+ V
Sbjct: 286 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 345

Query: 196 IMDELCKNGKMDEASSLL--------------------------------DLMIQHGVRP 223
           +M  LC+ GK+DEA  LL                                + M+  G  P
Sbjct: 346 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 405

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D FTYNTL+ G C  G +  A+EL   M+  GC
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 438



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 23/228 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++  L K   ++  L L++ +   G+  +  T++ LI+ F + G +     +
Sbjct: 510 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569

Query: 94  LGRIL-RSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +  +L R C   D+ T+  LIK +C+                    P+ I+ N +I+GLC
Sbjct: 570 VNDMLFRGCPLDDI-TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLC 628

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +  A E    M  + + P++VTY S+I G C      EA  LF ++  +G+ P+ +
Sbjct: 629 RTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 688

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           T+N ++   CK G  D+A  LL   +  G  P+  T+  L+  F   G
Sbjct: 689 TYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL + + ML     P    ++N ++  L +  + +  L+LF+ + S GL P+  + +I
Sbjct: 564 QEALKLVNDML-FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 622

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C+ G + H    L  ++    TPD+VT              YN++I+GLCK G  
Sbjct: 623 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVT--------------YNSLINGLCKTGRA 668

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K++ + + P+ +TY ++I   C    +++A  L    +D G  PN VT+ ++
Sbjct: 669 QEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 728

Query: 197 MDELCKNGKMD 207
           +    K G  +
Sbjct: 729 VSNFIKEGDQE 739



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           + G   +A  L L M+   + +P   +Y  V+      N       +F EM+ +G+ P V
Sbjct: 176 RAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTV 235

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF V+M  LC   ++D A +LL  M +HG  P+A  Y TL+      GRVN   +L   
Sbjct: 236 YTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEE 295

Query: 251 MESMGC 256
           M  MGC
Sbjct: 296 MLLMGC 301


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 83  LTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 142

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 143 EIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYS 202

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 203 VLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 262

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            +  +++T+N ++  LCK G + +A +L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 263 SLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETA 322

Query: 245 KE 246
            E
Sbjct: 323 FE 324



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + ++G +  GF 
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 184

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 185 LKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHC 244

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++  +++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 245 KNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKI 304

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MIQ  +R D   Y TL+ G C  GR   A+++   M
Sbjct: 305 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREM 364

Query: 252 ESMG 255
            S+G
Sbjct: 365 LSVG 368



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EG+I       A  +FD + +    P  VS FN ++    +    D    L   ++++G+
Sbjct: 141 EGEIRV-----ARSVFDAITKWGLRPSVVS-FNTLMNGYIRLGDLDEGFRLKSAMHASGV 194

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI              
Sbjct: 195 EPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 254

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  +    D ITYNT+I GLCK+G + +A+ L  +M+ K +KP+ +TYT++I G C
Sbjct: 255 IYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCC 314

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D   A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 315 KEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTG 374

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 375 TYTMIINEFCKKGDVWTGSKLLKEMQRDG 403



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 189 MHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 248

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L    + D++T+ +LI                     K  KPD ITY T
Sbjct: 249 VDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTT 308

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 309 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVG 368

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +I++E CK G +   S LL  M + G  P   T
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+        +F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 128 PASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 187

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 188 LKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 247

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  + + P+++TY +++ G C   D N+A  L  EM  +G++P+  
Sbjct: 248 KNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKF 307

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 308 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREM 367

Query: 252 ESMG 255
            S+G
Sbjct: 368 LSVG 371



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K +++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 86  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 145

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +    +V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 146 DIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYS 205

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 206 VLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 265

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G +++A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 266 XLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAA 325

Query: 245 KE 246
            E
Sbjct: 326 FE 327



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 21/229 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 192 MRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 251

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L     PD++T+ +L+                     K  KPD  TY T
Sbjct: 252 VDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTT 311

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 312 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVG 371

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           ++P+  T+ +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 372 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   + ++G+ PD+YT+S+LIN  CK   +     +
Sbjct: 164 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANEL 223

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT++ GLCK
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCK 283

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +++A  L  +M  K +KP+  TYT++I G C   D + A      M+ + ++ + V 
Sbjct: 284 KGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 343

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 344 YTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 403

Query: 253 SMG 255
             G
Sbjct: 404 RNG 406



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++  +     T   V+        +     
Sbjct: 58  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 117

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A  + D + + G+RP   +YNTL++G+ 
Sbjct: 118 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYI 177

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 178 RLGDLDEGFRLKSAMRASG 196


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 26/240 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++FN  +  L K         L  R+   G  P+ +T+ +L++  C+MG+V    ++
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344

Query: 94  LGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGLC 131
           L ++      P+VV F +LI                        C PD  TYNT+I GLC
Sbjct: 345 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 400

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G++  A+EL  +M+ K  +PNV+TYT +I  FC      EA+ +  EM  +G+  N V
Sbjct: 401 KKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 460

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +N ++  LCK+ K+ +A ++   M   G +PD FT+N+L+ G C   +   A  L+  M
Sbjct: 461 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 520



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 21/232 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            +N ++  L K++     L++F  ++S G  PD++T + LI   CK+ +      +   +
Sbjct: 461 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 520

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
           L      + +T+ +LI                       C  D ITYN +I  LC+ G +
Sbjct: 521 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 580

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K   LF  M  K + PN ++   +I G C   +   A     +M+ +G+ P++VT+N +
Sbjct: 581 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 640

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ LCK G+  EA +L D +   G+ PDA TYNTL+   C  G  + A  L 
Sbjct: 641 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLL 692



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K  +  +   L   +   G  P++ T++ILI+ FCK GR+     V
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +       + V +  LI                     K CKPD  T+N++I GLCK
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 506

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF--------------------------- 165
               ++A  L+  M  + V  N +TY ++I  F                           
Sbjct: 507 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 566

Query: 166 --------CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                   C A +  +   LF +MM +G+ PN ++ N++++ LC+ G +  A   L  MI
Sbjct: 567 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 626

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  TYN+L++G C TGR   A  LF  ++  G
Sbjct: 627 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 664



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 46/273 (16%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A  +   M  ++   P   S+N++L  L        V ++F  + S G+ P +YT  
Sbjct: 162 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 221

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++   C +  V     +L  + R                C P+AI Y T+I  L K G 
Sbjct: 222 VVMKALCLVNEVDSACALLKDMTRHG--------------CVPNAIVYQTLIHALXKVGR 267

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V++  +L  +M      P+V T+   I G C     +EA +L   M+ +G  PN  T+ V
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327

Query: 196 IMDELCKNGKMDEASSLL--------------------------------DLMIQHGVRP 223
           +M  LC+ GK+DEA  LL                                + M+  G  P
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 387

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D FTYNTL+ G C  G +  A+EL   M+  GC
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 420



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 23/228 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++  L K   ++  L L++ +   G+  +  T++ LI+ F + G +     +
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551

Query: 94  LGRIL-RSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +  +L R C   D+ T+  LIK +C+                    P+ I+ N +I+GLC
Sbjct: 552 VNDMLFRGCPLDDI-TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLC 610

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G +  A E    M  + + P++VTY S+I G C      EA  LF ++  +G+ P+ +
Sbjct: 611 RTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 670

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           T+N ++   CK G  D+A  LL   +  G  P+  T+  L+  F   G
Sbjct: 671 TYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EAL + + ML     P    ++N ++  L +  + +  L+LF+ + S GL P+  + +I
Sbjct: 546 QEALKLVNDML-FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 604

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C+ G + H    L  ++    TPD+VT              YN++I+GLCK G  
Sbjct: 605 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVT--------------YNSLINGLCKTGRA 650

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K++ + + P+ +TY ++I   C    +++A  L    +D G  PN VT+ ++
Sbjct: 651 QEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 710

Query: 197 MDELCKNGKMD 207
           +    K G  +
Sbjct: 711 VSNFIKEGDQE 721



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 108 TFTSLIKVCKPDAITYNT-----IIDGLCKQGFVDKAKELFLKMKD-KNVKPNVVTYTSV 161
           T  +L+   K + I +       I+    + G   +A  L L M+   + +P   +Y  V
Sbjct: 129 TIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVV 188

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +      N       +F EM+ +G+ P V TF V+M  LC   ++D A +LL  M +HG 
Sbjct: 189 LDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGC 248

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            P+A  Y TL+      GRVN   +L   M  MGC
Sbjct: 249 VPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGC 283


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPS-VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +    L P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A ELF +M D  + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANELFDEMLDNGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+++++ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ FCK G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  TY+
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M D  + PN V++T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCKNG + +A  L++ M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L +   P+ V+FT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 NGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  + + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S L+  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 26/265 (9%)

Query: 17  NEALCIFDYM----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           +  L  +DY+    + M+ SP  +S FN+++  L K +  D  + +F+ +      PD Y
Sbjct: 165 HRGLEFYDYVVNSNMNMNISPNGLS-FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGY 223

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
           T+  L++  CK  R+    ++L  +     +P  V +  LI                   
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283

Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
             K C P+ +TYNT+I GLC +G +DKA  L  +M      PN VTY ++I G       
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +A RL   M ++G   N   ++V++  L K GK +EA SL   M + G +P+   Y+ L
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +DG C  G+ N AKE+   M + GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGC 428



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + D M     SP PV  +N+++  L K      V  L   +   G  P+  T++ 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C  G++     +L R++ S               C P+ +TY T+I+GL KQ   
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSS--------------KCIPNDVTYGTLINGLVKQRRA 343

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L   M+++    N   Y+ +I G        EA  L+ +M ++G +PN+V ++V+
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LC+ GK +EA  +L+ MI  G  P+A+TY++L+ GF  TG    A +++  M+  GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 24/219 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +++++  L K    +  +SL++++   G  P++  +S+L++  C+ G+ +    +L R++
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
            S   P+  T++SL+K                      C  +   Y+ +IDGLC  G V 
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPNVVTFN 194
           +A  ++ KM    +KP+ V Y+S+I+G C     + A +L+ EM+ Q     QP+VVT+N
Sbjct: 485 EAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYN 544

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           +++D LC    +  A  LL+ M+  G  PD  T NT L+
Sbjct: 545 ILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLN 583



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 27/265 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GD+T +T      + D M      P  V+ +N ++  L      D  +SL +R+ S+  
Sbjct: 270 KGDLTRVTK-----LVDNMFLKGCVPNEVT-YNTLIHGLCLKGKLDKAVSLLERMVSSKC 323

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
            P+  T+  LIN   K  R +    +L  +    +  +   ++ LI              
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMS 383

Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                  K CKP+ + Y+ ++DGLC++G  ++AKE+  +M      PN  TY+S+++GF 
Sbjct: 384 LWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFF 443

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                 EA +++ EM   G   N   ++V++D LC  G++ EA  +   M+  G++PD  
Sbjct: 444 KTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTV 503

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
            Y++++ G C  G ++ A +L+  M
Sbjct: 504 AYSSIIKGLCGIGSMDAALKLYHEM 528



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 39/253 (15%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PNEA  I + M+     P   +  ++M G   K    +  + ++K ++ TG   + + +S
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKG-FFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK 117
           +LI+  C +GRV    +V  ++L     PD V ++S+IK                  +C+
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQ 531

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
                 PD +TYN ++DGLC Q  + +A +L   M D+   P+V+T  + +      ++ 
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS 591

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +  R F+E +              +  L K  ++  A +++++M+   + P   T+  +
Sbjct: 592 CDKGRSFLEEL--------------VVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMI 637

Query: 232 LDGFCLTGRVNHA 244
           +   C   ++N A
Sbjct: 638 VREICKPKKINAA 650


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMLDNXLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  TY+
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +    L P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A +   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
          Length = 517

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 129/283 (45%), Gaps = 64/283 (22%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSILINCFCKMGRVSHGFV 92
           + SFN  L  +A++     V SLF R+   G   + PDL T+SILI C C+ GR+  GF 
Sbjct: 195 IYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFA 253

Query: 93  VLGRILRSCFT------------------------------------PDVVTFTSLIK-V 115
            LG +++  F                                     PDV + T L+K +
Sbjct: 254 ALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGL 313

Query: 116 CK-----------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           C                        PD ++Y T+I+G  K+G  DKA   + +M D+ + 
Sbjct: 314 CDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRIS 373

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTY+S+I   C A   ++A  +   M+  GV P+ +T+N I+   C +G+  EA   
Sbjct: 374 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 433

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  M   GV P+  TY +L++  C  GR   A+++F SM   G
Sbjct: 434 LKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRG 476



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+      PD+++ +IL+   C   R      +L  +   
Sbjct: 273 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 332

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   P+ +TY++II  LCK   +
Sbjct: 333 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAM 392

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+PNVVT+  +
Sbjct: 393 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSL 452

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M+ LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 453 MNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 495



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 24/207 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V S  I+L  L         L L   +      G  PD+ +++ +IN F K G     
Sbjct: 301 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 360

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG 129
           +     +L    +P+VVT++S+I  +CK                    PD +TYN+I+ G
Sbjct: 361 YSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 420

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            C  G   +A     KM+   V+PNVVTY S++   C      EA+++F  M  +G++P+
Sbjct: 421 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPD 480

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLM 216
           + T+  ++      G + E  +LLDLM
Sbjct: 481 IATYRTLLQGYATKGALVEMHALLDLM 507


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL  F  +LR       + + +++ G     +  + +  L  R    G  PD+++++
Sbjct: 93  PELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 152

Query: 76  ILINCFCKMGRVSHGFVVLGRILR--SCFTPDVVTFTSLI----------KVCK------ 117
           IL+   C  G+      +L  +    +  +PDVV + ++I          K C       
Sbjct: 153 ILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 212

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                PD +TYN+++  LCK   +DKA+    +M +K V PN  TY ++I G+     W 
Sbjct: 213 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 272

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA R+F EM    + P+VVT +++M  LCK GK+ EA  + D M   G  PD F+YN +L
Sbjct: 273 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 332

Query: 233 DGFCLTGRVNHAKELF 248
           +G+   G +    +LF
Sbjct: 333 NGYATKGCLVDMTDLF 348



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 123/253 (48%), Gaps = 27/253 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGD+     N+A  +F  M++    PP + ++N ++  L K +  D   +  +++ +  +
Sbjct: 198 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 251

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK--------- 117
            P+ +T++ LI  +   G+      V   + R    PDVVT + L+  +CK         
Sbjct: 252 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 311

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD  +YN +++G   +G +    +LF  M    + P+  T+   I+ + 
Sbjct: 312 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYA 371

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
                ++A  +F EM D GV+P+VVT+  ++  LC+ GKMD+A    + MI  GV PD +
Sbjct: 372 NCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 431

Query: 227 TYNTLLDGFCLTG 239
            YN L+ GFC  G
Sbjct: 432 AYNCLIQGFCTHG 444



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 29/227 (12%)

Query: 55  VLSLFKRLNSTG-----LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
            ++LF R  S       L P  YT++IL++C  +  R        G++LR+    D +  
Sbjct: 56  AVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIA 115

Query: 110 TSLIK----------------------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
           + L+K                       C PD  +YN ++  LC QG   +A  L   M 
Sbjct: 116 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMA 175

Query: 148 DKNV--KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           +      P+VV Y +VI GF    D N+A  LF EM+ +G+ P++VT+N ++  LCK   
Sbjct: 176 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 235

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           MD+A + L  M+   V P+ +TYN L+ G+  TG+   A  +F  M 
Sbjct: 236 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 282



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 22/146 (15%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M  M    P V S+NIML   A       +  LF  +   G+ PD YT ++ 
Sbjct: 308 EARDVFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQ 366

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           I  +   G +    ++   +      PDVVT+ ++I  +C+                   
Sbjct: 367 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 426

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKEL 142
            PD   YN +I G C  G + K + +
Sbjct: 427 APDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 128/280 (45%), Gaps = 62/280 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+  ++  L KN+  D    LF+ +   G  PD  T++ LI+  C   R+     +
Sbjct: 144 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 203

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC- 131
           L  ++ + F PD +TFT+LI                     + C PD +T+  ++  LC 
Sbjct: 204 LTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 263

Query: 132 ---------------------------------KQGFVDKAKELFLKMKDKNVKPNVVTY 158
                                            ++GF D+A  L  KM  + V PNVVTY
Sbjct: 264 RRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGF-DRAARLLQKMARRGVAPNVVTY 322

Query: 159 TSVIRGFCYANDWNE---AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           T+  +G     DW E   A R F  M++QG++P++V +NV++D  CK  ++D A  ++  
Sbjct: 323 TAFFKGL---GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRY 379

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M Q G+ P+  TYNTL+   C  G+V    EL  +M S G
Sbjct: 380 MDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRG 419



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 25/244 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++  L +    D   S    +    L PD++T++++I+  CK  R+S     
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 65

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
                 +   PDVVT+ +L+  +CK                    P  +TY T+ID  CK
Sbjct: 66  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               + A  L   M  +   P V +Y S+I G C     ++A +LF EM   G +P+ VT
Sbjct: 124 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVT 183

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC   ++ EA  LL +M+++  +PD  T+  L++G C T R+  A  LF  M 
Sbjct: 184 YNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMA 243

Query: 253 SMGC 256
             GC
Sbjct: 244 KQGC 247



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 25/232 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L K +     +  F+ +      PD+ T++ L+   CK GRV+    +
Sbjct: 43  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 98

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
            G +  +  TP  VT+T+LI V                     C P   +Y +II+GLCK
Sbjct: 99  FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 158

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A +LF +MK    KP+ VTY ++I G C     +EAK L   M++   QP+ +T
Sbjct: 159 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKIT 218

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           F  +++ LC   ++ EA  L   M + G  PD  T+  L+   C+  ++  A
Sbjct: 219 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPA 270



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 4/141 (2%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKP+A++Y  ++  LC+ G +DKA     +M  + + P+V TY  VI   C A   + A 
Sbjct: 6   CKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA- 64

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
              IE  +   +P+VVT+N ++  LCKNG++ +A SL   M   G+ P   TY TL+D F
Sbjct: 65  ---IEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVF 121

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   +   A  L   M S  C
Sbjct: 122 CKMCQFETAYGLLQLMASRKC 142



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            ++ KPN ++Y  +++  C     ++A     EM  + + P+V T+NV++D LCK  ++ 
Sbjct: 3   SQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRIS 62

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            A    + M +    PD  TYNTLL G C  GRV  A  LF SME  G
Sbjct: 63  RAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAG 106



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           +  Q  +PN +++  ++  LC+ GK+D+A S +  M +  + PD FTYN ++D  C   R
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 241 VNHAKELFVSM 251
           ++ A E F +M
Sbjct: 61  ISRAIEFFETM 71


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 20/235 (8%)

Query: 25  YMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++ R  PS    P    S+N +L  L  + H     SL   + + G  P   T+++L+  
Sbjct: 114 HLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKA 173

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C     +H    L R+ R+              + KPD  +YNTIIDGLC++G + +A 
Sbjct: 174 HCSDA-AAHIEDAL-RLFRN--------------IPKPDVCSYNTIIDGLCRRGRLAEAL 217

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F +M  K + P VVTYT+VI        +++A ++F EM  +GV PN+VT++ ++D L
Sbjct: 218 DMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGL 277

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+   A  LLD MI+    P+  TY++++DG C    ++ A E+   M   G
Sbjct: 278 CKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQG 332



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 34/250 (13%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  +++N++L   C     H +  L LF+ +      PD+ +++ +I+  C+ GR++   
Sbjct: 162 PTAATYNVLLKAHCSDAAAHIEDALRLFRNIPK----PDVCSYNTIIDGLCRRGRLAEAL 217

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   ++  C  P VVT+T++I                     +   P+ +TY+++IDGL
Sbjct: 218 DMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGL 277

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G    A EL  +M  +   PN++TY+SVI G C  +  +EA  +   M  QG +P+ 
Sbjct: 278 CKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDA 337

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             F  ++  LC  G+  EA++ LD M+  G+ P+  T+       NT+L   C  G +  
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGR 397

Query: 244 AKELFVSMES 253
           A +++ S  +
Sbjct: 398 AFQVYQSTRT 407



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 58/258 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  LA+   +D  L +F  +   G+ P+L T+S LI+  CK GR +    +
Sbjct: 230 PTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALEL 289

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+++    P++              ITY+++IDGLCK+  + +A E+  +M+ +  KP
Sbjct: 290 LDRMIKEKKLPNM--------------ITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKP 335

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT--------------------- 192
           +   +  +I G C A    EA     EM+  G++PN VT                     
Sbjct: 336 DAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGEL 395

Query: 193 ---------------------FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
                                F+++++   KN     A  +LD++ +  + P+  T++ +
Sbjct: 396 GRAFQVYQSTRTRSISTDPTTFHLLVESFSKNNIEKAARVVLDMLSERCI-PERETWDVI 454

Query: 232 LDGFCLTGRVNH-AKELF 248
           + G+    +V   AKE++
Sbjct: 455 ISGYWSKKKVRQEAKEIW 472



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 31/227 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL IF  M R   SP  V+ ++ ++  L K     + L L  R+      P++ T+S 
Sbjct: 249 DDALKIFHEMGRRGVSPNLVT-YSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSS 307

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------------- 116
           +I+  CK   +S    +L R+      PD   F  LI  +C                   
Sbjct: 308 VIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAG 367

Query: 117 -KPDAITY-------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
            +P+ +T+       NT++  LC +G + +A +++   + +++  +  T+  ++  F   
Sbjct: 368 IEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFS-K 426

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM-DEASSLLD 214
           N+  +A R+ ++M+ +   P   T++VI+       K+  EA  + D
Sbjct: 427 NNIEKAARVVLDMLSERCIPERETWDVIISGYWSKKKVRQEAKEIWD 473


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+  F  + R H     +  FN +L  L K++H     SL + L      PD  T++
Sbjct: 156 PDHAVRFFLSLHRSHGVAQDLPLFNSLLDALVKSRHAGKAASLVRALERR-FPPDAVTYN 214

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L + +C++   S    +L +++ S   P                 TYN I+ G  + G 
Sbjct: 215 TLADGWCRVKDTSRALDILRQMVESGIAPT--------------KTTYNIILKGFFRSGQ 260

Query: 136 VDKAKELFLKMK-----DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           +  A + FL+MK     D+N KP+VV+YT+V+ G   A   ++A+++F EM  +G  P++
Sbjct: 261 LQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSI 320

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+N ++   CK G +++A ++ D MI+ G  P+  TY  L+ G C  G+++ A +L   
Sbjct: 321 ATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDK 380

Query: 251 MESMGC 256
           M+  GC
Sbjct: 381 MKREGC 386



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 67/286 (23%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   ++N +     + K     L + +++  +G+ P   T++I++  F + G++ H + 
Sbjct: 207 PPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWD 266

Query: 93  VLGRILR------SCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
              ++ +      +C  PDVV++T+++                     + C P   TYN 
Sbjct: 267 FFLQMKKRGSNDENC-KPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNA 325

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I   CK+G V+ A  +F  M  K   PNVVTYT +IRG C+A   + A +L  +M  +G
Sbjct: 326 LIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREG 385

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLM----------------------------- 216
            +PNV T+NV++  L + G +++A  L + M                             
Sbjct: 386 CEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDM 445

Query: 217 ----------IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
                     +  G  P  F +N +L+G  LTG    ++EL    E
Sbjct: 446 AVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRELLRMQE 491


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +S+N ++  L        V S+   +   GL P++ T++ +++ FCK   +     +
Sbjct: 220 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAI 279

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L R++    TP+V+TFT+L+K                        P  I+YN +I GLC 
Sbjct: 280 LARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCC 339

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A + F  MK   + PN  TY++++ GF  A D + A  ++ EM   G +PNVV 
Sbjct: 340 IGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV 399

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK    D+A SL+D M+     P+  T+NTL+   C  GRV  A  +F  M 
Sbjct: 400 YTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR 459

Query: 253 SMGC 256
             GC
Sbjct: 460 RNGC 463



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 127/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++ +M+    +P  +S +N+++  L         L  F  +    L P+  T+S 
Sbjct: 309 HDALSMWHWMVDEGWAPSTIS-YNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYST 367

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L++ F   G +    ++   +  S   P+VV +T++I V                     
Sbjct: 368 LVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDN 427

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+NT+I  LC  G V +A  +F  M+     PN  TY  ++ G     +  +A 
Sbjct: 428 CPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAF 487

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            + IEM++ G + ++VT+N +++ LC+      A  LL  M+  G++PDAFT+N ++  +
Sbjct: 488 AMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 547

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+V+ A  L   M ++ C
Sbjct: 548 CKEGKVSIAACLLGQMNAVNC 568



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N +L  L +      V+ ++  +   G+ P++YT+++LI   C+  RV     +
Sbjct: 120 PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 179

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------PDAITYNTIIDGLCKQGFVD 137
           L  + R    PD V+  +++  +CK               P   +YN ++  LC +  + 
Sbjct: 180 LDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMW 239

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +   +  +M  + ++PNVVTYT+++  FC A +   A  +   M+  G  PNV+TF  ++
Sbjct: 240 EVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALV 299

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
               ++GK+ +A S+   M+  G  P   +YN L+ G C  G +  A + F SM+
Sbjct: 300 KGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMK 354



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            AL +F  M R    P   +   ++ G   +  H D    + + LN+ G    L T++ +
Sbjct: 450 RALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNN-GFELSLVTYNTV 508

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INC C+M    H  ++LGR++              ++  +PDA T+N II   CK+G V 
Sbjct: 509 INCLCQMCMRKHAMLLLGRMM--------------VQGIQPDAFTFNAIIHAYCKEGKVS 554

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L  +M   N   NVV YT +I   C     + A    ++M+ +G+ PN  T+NV++
Sbjct: 555 IAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 614

Query: 198 DELCKN 203
             +  N
Sbjct: 615 RAIFTN 620



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D ML M   PP   +FN ++G L         L++F  +   G  P+  T++ 
Sbjct: 414 DQAESLIDKML-MDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNE 472

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   + G     F ++  +L + F   +VT              YNT+I+ LC+    
Sbjct: 473 LLHGLFREGNHKDAFAMVIEMLNNGFELSLVT--------------YNTVINCLCQMCMR 518

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L  +M  + ++P+  T+ ++I  +C     + A  L  +M       NVV + ++
Sbjct: 519 KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTIL 578

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           + ELC  GK+  A   L  M+  G+ P+  T+N L+
Sbjct: 579 ISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 614



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNE 173
            C  DA+     I    + G  D+A + F +  D   + P V  Y  ++      N    
Sbjct: 83  ACTEDALV--AAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGA 140

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              ++  M   GV PNV T+N+++  LC+N ++D A  +LD M + G  PD  ++ T++ 
Sbjct: 141 VVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVS 200

Query: 234 GFCLTGRVNHAK 245
           G C  GRV  A+
Sbjct: 201 GMCKLGRVEEAR 212



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A  +   +  L   G VD  +    +M+ + V        + I  F  A   + A + F 
Sbjct: 51  ARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFY 110

Query: 180 EMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
              D G + P V  +N ++D L +   +     + D M + GV P+ +TYN L+   C  
Sbjct: 111 RASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQN 170

Query: 239 GRVNHAKELFVSMESMGC 256
            RV+ A+++   M   GC
Sbjct: 171 DRVDAARKMLDEMSRKGC 188


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPS-VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +    L P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A ELF +M D  + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANELFDEMLDNGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F+ M R       V  +  ++ C  ++ +    L LF  +   GL P  +T+  
Sbjct: 312 EEAQRLFEEM-REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 370

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+  CK G++    +++  +       + V F +LI                     K 
Sbjct: 371 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 430

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D   YN+I  GLCK    D+AK L   M ++ V PN +++T++I  +C   ++ EAK
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK 490

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+F EM ++G  PN++T+NV++D   K G M EA  L D +   G+ PD +T  +L+ G 
Sbjct: 491 RVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 550

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G+V+ A +LF  M   G
Sbjct: 551 CIDGKVDMALKLFDEMPQRG 570



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 26/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  F++M +        S   + L  L +    D+ L  F+R+ +  +   +Y+ +I+
Sbjct: 173 EALEAFEHMEKKGFHIDERSCL-VYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIV 231

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------- 114
           ++  CK G V  G  ++  +       +VVT+ + I+                       
Sbjct: 232 LDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV 291

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C  + +TY  +I G    G +++A+ LF +M++K ++ +V  YTS+I   C + +   A
Sbjct: 292 AC--NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM D+G+ P+  T+  ++  +CK G+M+ A  L++ M   G+  +   +NTL+DG
Sbjct: 350 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 409

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C +G V+ A  L V ME  G
Sbjct: 410 YCESGMVDEALRLQVVMEKKG 430



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++    ++   D  L L   +   GL  D++ ++ + +  CK+ R      +L  ++
Sbjct: 403 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 462

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
               +P+ ++FT+LI + CK                    P+ ITYN +IDG  K+G + 
Sbjct: 463 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 522

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +++++ + P+V T TS+I G C     + A +LF EM  +G+ PNVVT+  ++
Sbjct: 523 EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMI 582

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K+G+ +EA  L D M + G+ PD   Y++L+
Sbjct: 583 SGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N  +    K      V  +   +   G+  ++ T+++LI+ F  +G++     +  
Sbjct: 260 VVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFE 319

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +       DV  +TS+I  C              C+ G V +A  LF +M DK + P+ 
Sbjct: 320 EMREKGIEADVYVYTSIIS-CN-------------CRSGNVKRALVLFDEMTDKGLIPSA 365

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G C A     A+ L  EM  +G+  N V FN ++D  C++G +DEA  L  +
Sbjct: 366 HTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV 425

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G+  D F YN++  G C   R + AK L  SM   G
Sbjct: 426 MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 465



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P   SF  ++    K  ++     +F+ +   G  P++ T+++LI+ + K G +     
Sbjct: 467 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 526

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +      PDV T TSLI               G C  G VD A +LF +M  + + 
Sbjct: 527 LKDELENRGLIPDVYTCTSLIH--------------GECIDGKVDMALKLFDEMPQRGLV 572

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           PNVVTYT++I G        EA +L+ EM + G+ P+   ++ ++  L
Sbjct: 573 PNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N +L  L K         +F  +   G+ PD+Y  S ++N FC  GRV     +
Sbjct: 160 PSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIEL 219

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             ++ +    P+VVT              YN II GLCK G +D+A +   KM+ + VKP
Sbjct: 220 FRKMEKVGVAPNVVT--------------YNNIIHGLCKNGRLDEAFQFKEKMEKERVKP 265

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VTY  +I G      ++EA  +  EM D+G  PN V +N ++D  C+ G +  A  + 
Sbjct: 266 SLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIR 325

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D MI +G+ P++ T N+L+ G+C + ++ HA+ L   M + G
Sbjct: 326 DDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGG 367



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 21/232 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N++L  L      +    L+      G FPD YT+ I+I+ +CK  RV  G  +
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKL 569

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              ++      + V + +LI+  C+                      + TY+++I GL  
Sbjct: 570 FQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSN 629

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A +L  +M+ + + PNVV YT++I G+C     ++   +  EM    V PN +T
Sbjct: 630 IGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKIT 689

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           + ++++  CK G M  A+ LL+ M Q G+ PDA TYN L +GFC  G++  A
Sbjct: 690 YTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEA 741



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA CI   M     +P  V  +N ++    +  +  T L +   + S G+ P+  T + 
Sbjct: 284 DEANCILKEMSDRGYAPNNVV-YNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNS 342

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------------- 116
           LI  +CK  ++ H   +L  +L      +  TFTS+I ++C                   
Sbjct: 343 LIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRN 402

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+      ++ GLC+ G   +A EL+ ++ +K    N VT  ++I G C A    EA 
Sbjct: 403 FKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAA 462

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L  EM+++G+  + +++N ++   CK GK++E   L + M++ G++PD +TYN LL G 
Sbjct: 463 KLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522

Query: 236 CLTGRVNHAKELF 248
           C  G++  A  L+
Sbjct: 523 CNMGKIEEAGGLW 535



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 23/257 (8%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           L I + +LR     P      +++  L +N      + L+ RL   G   +  T + LI+
Sbjct: 393 LFIMEMLLRNFK--PNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIH 450

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KP 118
             C+ G       +L  +L      D +++ +LI  C                     +P
Sbjct: 451 GLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQP 510

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  TYN ++ GLC  G +++A  L+ + K     P+  TY  +I G+C AN   E ++LF
Sbjct: 511 DMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLF 570

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM+   ++ N V +  ++   C+NG M EA  L D M   G+   + TY++L+ G    
Sbjct: 571 QEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNI 630

Query: 239 GRVNHAKELFVSMESMG 255
           G V+ A +L   M   G
Sbjct: 631 GLVDSANQLLDEMRKEG 647



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 15/181 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M R    P   ++++ ++  L+     D+   L   +   GL P++  ++ L
Sbjct: 600 EAFRLRDDM-RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTAL 658

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +CK+G++      +  IL+     +V           P+ ITY  +I+G CK G + 
Sbjct: 659 IGGYCKLGQMHK----VDSILQEMSINNV----------HPNKITYTIMINGHCKLGNMK 704

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A +L  +M  K + P+ VTY ++  GFC      EA ++   M   G+  + +T+  ++
Sbjct: 705 AAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764

Query: 198 D 198
           D
Sbjct: 765 D 765



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ELF  + +K + P++ T   ++     AN+   + ++F  M   GV P+V  F+ +++  
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           C  G++D+A  L   M + GV P+  TYN ++ G C  GR++ A +    ME
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%)

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF  + ++G+ P++ T N ++  L K  ++  +  + D+M   GV PD + ++T+++ F
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  GRV+ A ELF  ME +G
Sbjct: 208 CTGGRVDDAIELFRKMEKVG 227


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 15/235 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +FD M R     P + ++N ++ CL K         + K ++ +GL PD+ T  IL
Sbjct: 343 DAVRVFDEMCR-EGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++  CK  R+    ++  +++ S  TPDV ++T LI  C              C    + 
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGC--------------CTSRRMG 447

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  L   M  KN+ P++VTY+ +I G C +   + A RL  EM  +G  P+ +T+++++
Sbjct: 448 EAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILL 507

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           D L K   +DEA  L + MI+ G+ PD   Y  ++DG+C + R++ A  LF  M 
Sbjct: 508 DALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMH 562



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  ++I++ CL +N   D     +  +   G+ P+ +T+  LI   C +G+   GF ++ 
Sbjct: 185 VVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVD 244

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++R      V  FT LI              DGLCK G + +A+E+F +M ++  +PN+
Sbjct: 245 EMIRRGLDVSVYVFTVLI--------------DGLCKNGMLVEAREMFDEMVNRGYEPNI 290

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VT T+++ G+C   + + A+ LF  + + G + +V T+NV +   CK G++ +A  + D 
Sbjct: 291 VTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDE 350

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + GV P+  TYN+L+D  C  G V+ A E+  +M   G
Sbjct: 351 MCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 129/260 (49%), Gaps = 24/260 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +FD M+     P  V+   +M G CL  N   D    LF  +   G   D++T+++
Sbjct: 273 EAREMFDEMVNRGYEPNIVTCTALMGGYCLKGN--VDMARELFDAIGEWGFKRDVWTYNV 330

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
            I+ +CK+GRV     V   + R    P++VT+ SLI  +CK                  
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +T   ++DGLCK   +D+A  LF ++ +  + P+V +YT +I G C +    EA 
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAM 450

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M  + + P++VT++ ++D LC++G++  A  LL+ M   G  PD  TY+ LLD  
Sbjct: 451 NLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDAL 510

Query: 236 CLTGRVNHAKELFVSMESMG 255
                ++ A  LF  M   G
Sbjct: 511 WKKQHLDEAVFLFNQMIKRG 530



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + N +L  L  N      L     + + G   +  ++ ILIN  C+ GRV+    +L  I
Sbjct: 109 ALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMI 168

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +         F       K + + Y+ +ID LC+ GFVD+  E + +M    V PN  T
Sbjct: 169 EKEKEKEKDGFFV------KGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFT 222

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y S+IRG C    + E   L  EM+ +G+  +V  F V++D LCKNG + EA  + D M+
Sbjct: 223 YGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMV 282

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G  P+  T   L+ G+CL G V+ A+ELF ++   G
Sbjct: 283 NRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWG 320



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G V  +  +F K+  +    + V   +V++G C      +A     E+++ G   N V++
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSY 145

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHG--------VRPDAFTYNTLLDGFCLTGRVNHAK 245
            ++++ LC+NG+++EA +LL ++ +          V+ +   Y+ ++D  C  G V+   
Sbjct: 146 GILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGF 205

Query: 246 ELFVSMESMG 255
           E +  M   G
Sbjct: 206 EFYNEMMGNG 215



 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +F+ M++     P V  + IM+    K++  D  ++LF+ ++   L PD+ T++I
Sbjct: 517 DEAVFLFNQMIK-RGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTI 575

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITY 123
           L N   K G  S+ +  +  I      P V+ +  L  +CK + + Y
Sbjct: 576 LFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKY--LAALCKSEHLDY 620


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M R       V  +  ++ C  ++ +    L LF  +   GL P  +T+  L
Sbjct: 317 EAQRLFEEM-REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 375

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK G++    +++  +       + V F +LI                     K  
Sbjct: 376 IHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGL 435

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   YN+I  GLCK    D+AK L   M ++ V PN +++T++I  +C   ++ EAKR
Sbjct: 436 ESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKR 495

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM ++G  PN++T+NV++D   K G M EA  L D +   G+ PD +T  +L+ G C
Sbjct: 496 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 555

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G+V+ A +LF  M   G
Sbjct: 556 IDGKVDMALKLFDEMPQRG 574



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 26/261 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  F++M +        S   + L  L +    D+ L  F+R+ +  +   +Y+ +I+
Sbjct: 177 EALEAFEHMEKKGFHIDERSCL-VYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIV 235

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------- 114
           ++  CK G V  G  ++  +       +VVT+ + I+                       
Sbjct: 236 LDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV 295

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C  + +TY  +I G    G +++A+ LF +M++K ++ +V  YTS+I   C + +   A
Sbjct: 296 AC--NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM D+G+ P+  T+  ++  +CK G+M+ A  L++ M   G+  +   +NTL+DG
Sbjct: 354 LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDG 413

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C +G V+ A  L V ME  G
Sbjct: 414 YCESGMVDEALRLQVVMEKKG 434



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 28/238 (11%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN ++    ++   D  L L   +   GL  D++ ++ + +  CK+ R      +L  ++
Sbjct: 407 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 466

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
               +P+ ++FT+LI + CK                    P+ ITYN +IDG  K+G + 
Sbjct: 467 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 526

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +++++ + P+V T TS+I G C     + A +LF EM  +G+ PNVVT+  ++
Sbjct: 527 EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMI 586

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L K+G+ +EA  L D M + G+ PD   Y++L+          H+ +  +SM+  G
Sbjct: 587 SGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL-------HSADESISMQIQG 637



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N  +    K      V  +   +   G+  ++ T+++LI+ F  +G++     +  
Sbjct: 264 VVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFE 323

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            +       DV  +TS+I  C              C+ G V +A  LF +M DK + P+ 
Sbjct: 324 EMREKGIEADVYVYTSIIS-CN-------------CRSGNVKRALVLFDEMTDKGLIPSA 369

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY ++I G C A     A+ L  EM  +G+  N V FN ++D  C++G +DEA  L  +
Sbjct: 370 HTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV 429

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G+  D F YN++  G C   R + AK L  SM   G
Sbjct: 430 MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 469



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 20/186 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P   SF  ++    K  ++     +F+ +   G  P++ T+++LI+ + K G +     
Sbjct: 471 SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHK 530

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +      PDV T TSLI               G C  G VD A +LF +M  + + 
Sbjct: 531 LKDELENRGLIPDVYTCTSLIH--------------GECIDGKVDMALKLFDEMPQRGLV 576

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTYT++I G        EA +L+ EM + G+ P+   ++ ++      G +  A   
Sbjct: 577 PNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV------GSLHSADES 630

Query: 213 LDLMIQ 218
           + + IQ
Sbjct: 631 ISMQIQ 636


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPS-VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +    L P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A ELF +M D  + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANELFDEMLDNGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   KM  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 24/257 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI- 76
           EA+  FD ML+     P V ++N       K    D +  L++ +  TG+  D+   ++ 
Sbjct: 173 EAVYTFD-MLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVG 231

Query: 77  -LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI  FC   +VS  + +L + L    TP    F  LI   CK                 
Sbjct: 232 YLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK 291

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  TY  II+G CK     +A E+F  +KD+   P++V YT++I GFC      +A
Sbjct: 292 NRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDA 351

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L+ EM+D+G  PN  ++N ++   CK G +DEA  L   M+  G +    + NTL+ G
Sbjct: 352 SKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILG 411

Query: 235 FCLTGRVNHAKELFVSM 251
            CL GR + A + F  M
Sbjct: 412 LCLHGRTDEAYDFFREM 428



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 56/274 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++    K K++  VL L   +      PD++T+  +IN FCK       F V
Sbjct: 260 PCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEV 319

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +    + PD+V +T+LI   CK                    P+  +YNT+I G CK
Sbjct: 320 FNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCK 379

Query: 133 QGFVDKAKELFLKMKD-----------------------------------KNVKPNVVT 157
            G +D+A +L+ KM D                                   KN+  +V+T
Sbjct: 380 IGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT 439

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I+GFC      ++  L  E+  +G+QP+  ++  ++ +LC+ G + EA  + + M 
Sbjct: 440 YNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMH 499

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G++P   T + ++ G C  G V    E  ++M
Sbjct: 500 NRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITM 533



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 22/244 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F+  L+     P +  +  ++    K    +    L+  +   G  P+ Y+++ L
Sbjct: 315 QAFEVFN-ALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTL 373

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------KVCKP- 118
           I  FCK+G +     +  ++L S +    ++  +LI                    CK  
Sbjct: 374 IYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 433

Query: 119 --DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
             D ITYNT+I G C++G V ++ +L  +++ K ++P+  +Y  +I+  C      EAK 
Sbjct: 434 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKE 493

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           ++ +M ++G+QP V T + I+  LC+ G + E    L  M++  ++P   T+  L+    
Sbjct: 494 MWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLI 553

Query: 237 LTGR 240
             G+
Sbjct: 554 QIGK 557



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F Y     P P  + ++   + C+ +    +  +  F  L   G  P + T +       
Sbjct: 145 FLYSFEFSPEPASLENY---IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCL 201

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K GR    + +   ++ +    DV            D  T   +I   C    V +A E+
Sbjct: 202 KFGRTDLIWKLYEGMMETGVQKDV------------DIETVGYLIQAFCNDNKVSRAYEI 249

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +  +  + P    +  +I GFC   + +    L   M+ +   P++ T+  I++  CK
Sbjct: 250 LRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCK 309

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           N    +A  + + +   G  PD   Y TL+ GFC  G++  A +L+  M   G
Sbjct: 310 NWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKG 362



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ ++  ML        +S   ++LG L  +   D     F+ +    +  D+ T++ 
Sbjct: 384 DEAMKLYKKMLDSGYKETTLSCNTLILG-LCLHGRTDEAYDFFREMPCKNIVCDVITYNT 442

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC+ G+V     +L  +                K  +P   +Y  +I  LC+ G V
Sbjct: 443 LIQGFCREGKVLQSTDLLKELQ--------------AKGLQPSTSSYAHLIQKLCQLGSV 488

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKE++  M ++ ++P V T   +I G C      E     I M+   ++P   TF  +
Sbjct: 489 QEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKL 548

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +  L + GK       +D      V P A T
Sbjct: 549 IQSLIQIGKELLLELKMDSKTSKEVYPLAMT 579


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 24/257 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI- 76
           EA+  FD ML+     P V ++N       K    D +  L++ +  TG+  D+   ++ 
Sbjct: 209 EAVYTFD-MLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVG 267

Query: 77  -LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI  FC   +VS  + +L + L    TP    F  LI   CK                 
Sbjct: 268 YLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK 327

Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              PD  TY  II+G CK     +A E+F  +KD+   P++V YT++I GFC      +A
Sbjct: 328 NRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDA 387

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +L+ EM+D+G  PN  ++N ++   CK G +DEA  L   M+  G +    + NTL+ G
Sbjct: 388 SKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILG 447

Query: 235 FCLTGRVNHAKELFVSM 251
            CL GR + A + F  M
Sbjct: 448 LCLHGRTDEAYDFFREM 464



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 56/274 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN ++    K K++  VL L   +      PD++T+  +IN FCK       F V
Sbjct: 296 PCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEV 355

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              +    + PD+V +T+LI   CK                    P+  +YNT+I G CK
Sbjct: 356 FNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCK 415

Query: 133 QGFVDKAKELFLKMKD-----------------------------------KNVKPNVVT 157
            G +D+A +L+ KM D                                   KN+  +V+T
Sbjct: 416 IGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT 475

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y ++I+GFC      ++  L  E+  +G+QP+  ++  ++ +LC+ G + EA  + + M 
Sbjct: 476 YNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMH 535

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             G++P   T + ++ G C  G V    E  ++M
Sbjct: 536 NRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITM 569



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +  ++    K    +    L+  +   G  P+ Y+++ LI  FCK+G +     +
Sbjct: 366 PDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKL 425

Query: 94  LGRILRSCFTPDVVTFTSLI------------------KVCKP---DAITYNTIIDGLCK 132
             ++L S +    ++  +LI                    CK    D ITYNT+I G C+
Sbjct: 426 YKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCR 485

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V ++ +L  +++ K ++P+  +Y  +I+  C      EAK ++ +M ++G+QP V T
Sbjct: 486 EGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCT 545

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
            + I+  LC+ G + E    L  M++  ++P   T+  L+      G+
Sbjct: 546 RDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGK 593



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F Y     P P  + ++   + C+ +    +  +  F  L   G  P + T +       
Sbjct: 181 FLYSFEFSPEPASLENY---IRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCL 237

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K GR    + +   ++ +    DV            D  T   +I   C    V +A E+
Sbjct: 238 KFGRTDLIWKLYEGMMETGVQKDV------------DIETVGYLIQAFCNDNKVSRAYEI 285

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
             +  +  + P    +  +I GFC   + +    L   M+ +   P++ T+  I++  CK
Sbjct: 286 LRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCK 345

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           N    +A  + + +   G  PD   Y TL+ GFC  G++  A +L+  M   G
Sbjct: 346 NWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKG 398



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ ++  ML        +S   ++LG L  +   D     F+ +    +  D+ T++ 
Sbjct: 420 DEAMKLYKKMLDSGYKETTLSCNTLILG-LCLHGRTDEAYDFFREMPCKNIVCDVITYNT 478

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI  FC+ G+V     +L  +                K  +P   +Y  +I  LC+ G V
Sbjct: 479 LIQGFCREGKVLQSTDLLKELQ--------------AKGLQPSTSSYAHLIQKLCQLGSV 524

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +AKE++  M ++ ++P V T   +I G C      E     I M+   ++P   TF  +
Sbjct: 525 QEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKL 584

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +  L + GK       +D      V P A T
Sbjct: 585 IQSLIQIGKELLLELKMDSKTSKEVYPLAMT 615


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 DIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LC+ G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI                     +   PD ITYNT+I GLC+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCR 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + +Q + V 
Sbjct: 289 KGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVG 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + + + L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MIQ  ++ D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L    +PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C    + +A+++  EM+  G
Sbjct: 317 LIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+ +T+ +I++E CK G +   S LL  M + G  P   T
Sbjct: 377 LKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN++L  L      D    L+      G  P++YT+ ++I+ +CK  +V  G  +
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENL 628

Query: 94  LGRILRSCFTPDVVTFTSLIKV----------------CKPDAI-----TYNTIIDGLCK 132
           L  ++      + V + SLI+                  K   +     TY++++ GLC 
Sbjct: 629 LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCN 688

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD AK L  +M+ + + PNVV YT++I G+      N+   +  EM    + PN  T
Sbjct: 689 IGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFT 748

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CK GK  EA+ LL+ M + G+ PDA TYN   +G C  G+V  A ++   M 
Sbjct: 749 YTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMS 808

Query: 253 S 253
           S
Sbjct: 809 S 809



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P    SF++++  L     + T L   + +    L P+    + L++  CK G+      
Sbjct: 428 PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVE 487

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLC 131
           +  R+L   F P++VT  +LI  +CK                     D ITYNT+I G C
Sbjct: 488 LWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCC 547

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G V +  EL  +M  K ++P++ T+  ++ G C A+  +EA RL+ E    G  PNV 
Sbjct: 548 KEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVY 607

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+ V++D  CK  K++E  +LL+ ++   +  ++  YN+L+  +C+ G +N A  L   M
Sbjct: 608 TYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDM 667

Query: 252 ESMG 255
           +S G
Sbjct: 668 KSRG 671



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  F+ M+    K    D  + LF ++   G+ P++ T++ +I+  CK GR+   +  
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 94  LGRILRSCFTPDVVTFT----SLIKVCK-----------------PDAITYNTIIDGLCK 132
             ++++   +P ++T++     LIK+ K                 P+ + YNT+IDG CK
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A ++   M  K + PN VT  S+I+GFC ++   +A+ +  EM+ +G+  N  +
Sbjct: 374 MGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGS 433

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F+++++ LC   +   A   +  M+   +RP+     TL+ G C  G+   A EL+  + 
Sbjct: 434 FSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLL 493

Query: 253 SMG 255
             G
Sbjct: 494 GKG 496



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 21/219 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-C 116
           +F  L   GLFP L T + L++   K   +   + V   I      PDV  F+++I   C
Sbjct: 208 VFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFC 267

Query: 117 K--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           K                    P+ +TYN II GLCK G +D+A     KM  + V P+++
Sbjct: 268 KGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLI 327

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY+  I G       +EA  +  EM + G  PN V +N ++D  CK G + EA  + D M
Sbjct: 328 TYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM 387

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  G+ P++ T N+L+ GFC + ++  A+ +   M   G
Sbjct: 388 LSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + N ++  L K  +    L L + +   GL  D  T++ LI+  CK G+V  GF +
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +++    PD+ TF              N ++ GLC    +D+A  L+ + K     P
Sbjct: 559 KEEMVKKGIQPDIYTF--------------NLLLHGLCNADKIDEASRLWHECKKNGYVP 604

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TY  +I G+C AN   E + L  E++ + ++ N V +N ++   C NG M+ A  L 
Sbjct: 605 NVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLR 664

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M   GV     TY++L+ G C  G V+ AK L   M   G
Sbjct: 665 DDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG 706



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A+ +F  M ++  +P  V+  NI+ G L K+   D      +++    + P L T+S+
Sbjct: 273 DDAIGLFSKMEKLGVAPNVVTYNNIIHG-LCKSGRLDEAYRFKEKMVKEKVSPSLITYSV 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
            IN   K+ ++     VL  +    F P+ V + +LI                     K 
Sbjct: 332 FINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKG 391

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKD--------------------------- 148
             P+++T N++I G CK   + +A+ +  +M                             
Sbjct: 392 ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTAL 451

Query: 149 --------KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
                   +N++PN    T+++ G C A    EA  L+  ++ +G  PN+VT N ++  L
Sbjct: 452 HFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGL 511

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G M E   LL  M++ G+  D  TYNTL+ G C  G+V    EL   M   G
Sbjct: 512 CKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKG 566



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 37/95 (38%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++ IM+    K         L   +   G+ PD  T++   N  CK G+V  
Sbjct: 740 HNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEE 799

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
            F V   +       D +T+T+LI  C   +   N
Sbjct: 800 AFKVCDEMSSGAVCLDEITYTTLIDGCHQPSTATN 834


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 42/232 (18%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------- 114
           G+  D+   SILIN F  + ++++ F VL +IL+  + PD VT T+L+K           
Sbjct: 5   GIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKA 64

Query: 115 -------------------------VCK------PDAITYNTIIDGLCKQGFVDKAKELF 143
                                    +CK      PD   Y+ II+ LCK   V  A +L+
Sbjct: 65  LHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLY 124

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            +M  K + P+VVTY ++I GFC      +A RLF EM  + + PNV +FN+++D LCK 
Sbjct: 125 CEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKE 184

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G +    S+L +MI+  V+PD  T ++L+DG+ L  + N A+ +F +M   G
Sbjct: 185 GDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNG 236



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++         +  + LF  +    + P++ + +ILI+  CK G V  G  V
Sbjct: 134 PDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSV 193

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKP--------------DAITYNTIIDGLCK 132
           L  +++    PDVVT +SLI       K  K               D  +YN +I+GL K
Sbjct: 194 LAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSK 253

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              VD+A  LF +M+ K++ P+ +TY+++I G       +    L  EM   G   NV+T
Sbjct: 254 AKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVIT 313

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ +++ LCK+G  D A  +   +   G  P+  TYN L+DG C  GR+  A+E+F
Sbjct: 314 YSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIF 369



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 22/248 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F+ M R+    P V SFNI++  L K        S+   +    + PD+ T S L
Sbjct: 154 DAIRLFNEM-RLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSL 212

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+ +  + + +    +   + ++  T D+ ++  +I                     K  
Sbjct: 213 IDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSM 272

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD ITY+T+IDGL K G +    +L  +M+      NV+TY+S++   C +  ++ A R
Sbjct: 273 TPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIR 332

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F ++ D+G +PN+VT+N+++D LCKNG++ +A  +   ++  G R D   Y  +++G C
Sbjct: 333 IFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLC 392

Query: 237 LTGRVNHA 244
                + A
Sbjct: 393 REALFDEA 400



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 24/217 (11%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            N+A  IF+ M + +     + S+NIM+  L+K K  D  + LFK +    + PD  T+S
Sbjct: 222 ANKARYIFNAMAQ-NGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYS 280

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+   K+GR+S+ + ++  +  +  + +V+T++SL+ V              LCK G 
Sbjct: 281 TLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNV--------------LCKSGH 326

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            D A  +F K+KDK  +PN+VTY  ++ G C      +A+ +F +++ +G + +V  + V
Sbjct: 327 FDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTV 386

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +++ LC+    DEA         +G  P+A TY  ++
Sbjct: 387 MINGLCREALFDEA---------YGCTPNAVTYEIII 414



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 14/226 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
               P    +++++  L K+K       L+  +    +FPD+ T++ LI  FC +G++  
Sbjct: 95  ETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLED 154

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
              +   +      P+V +F              N +IDGLCK+G V   K +   M  +
Sbjct: 155 AIRLFNEMRLKNIVPNVCSF--------------NILIDGLCKEGDVKGGKSVLAVMIKQ 200

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           +VKP+VVT +S+I G+      N+A+ +F  M   GV  ++ ++N++++ L K   +DEA
Sbjct: 201 SVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEA 260

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             L   M    + PD  TY+TL+DG    GR+++  +L   M + G
Sbjct: 261 VILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATG 306



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+ + ++ +++  + +I  F +    N A  +  +++  G QP+ VT   ++  LC N +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           + +A    D +I  G R D  +Y TL++G C +G      +   SM
Sbjct: 61  VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSM 106


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +S+N ++  L        V S+   +   GL P++ T++ +++ FCK   +     +
Sbjct: 167 PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAI 226

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L R++    TP+V+TFT+L+K                        P  I+YN +I GLC 
Sbjct: 227 LARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCC 286

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A + F  MK   + PN  TY++++ GF  A D + A  ++ EM   G +PNVV 
Sbjct: 287 IGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV 346

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++D LCK    D+A SL+D M+     P+  T+NTL+   C  GRV  A  +F  M 
Sbjct: 347 YTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR 406

Query: 253 SMGC 256
             GC
Sbjct: 407 RNGC 410



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 127/261 (48%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++ +M+    +P  +S +N+++  L         L  F  +    L P+  T+S 
Sbjct: 256 HDALSMWHWMVDEGWAPSTIS-YNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYST 314

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L++ F   G +    ++   +  S   P+VV +T++I V                     
Sbjct: 315 LVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDN 374

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+NT+I  LC  G V +A  +F  M+     PN  TY  ++ G     +  +A 
Sbjct: 375 CPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAF 434

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            + IEM++ G + ++VT+N +++ LC+      A  LL  M+  G++PDAFT+N ++  +
Sbjct: 435 AMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAY 494

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+V+ A  L   M ++ C
Sbjct: 495 CKEGKVSIAACLLGQMNAVNC 515



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +N +L  L +      V+ ++  +   G+ P++YT+++LI   C+  RV     +
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------PDAITYNTIIDGLCKQGFVD 137
           L  + R    PD V+  +++  +CK               P   +YN ++  LC +  + 
Sbjct: 127 LDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMW 186

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +   +  +M  + ++PNVVTYT+++  FC A +   A  +   M+  G  PNV+TF  ++
Sbjct: 187 EVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALV 246

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
               ++GK+ +A S+   M+  G  P   +YN L+ G C  G +  A + F SM+
Sbjct: 247 KGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMK 301



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 15/186 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            AL +F  M R    P   +   ++ G   +  H D    + + LN+ G    L T++ +
Sbjct: 397 RALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNN-GFELSLVTYNTV 455

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           INC C+M    H  ++LGR++              ++  +PDA T+N II   CK+G V 
Sbjct: 456 INCLCQMCMRKHAMLLLGRMM--------------VQGIQPDAFTFNAIIHAYCKEGKVS 501

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  L  +M   N   NVV YT +I   C     + A    ++M+ +G+ PN  T+NV++
Sbjct: 502 IAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 561

Query: 198 DELCKN 203
             +  N
Sbjct: 562 RAIFTN 567



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D ML M   PP   +FN ++G L         L++F  +   G  P+  T++ 
Sbjct: 361 DQAESLIDKML-MDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNE 419

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   + G     F ++  +L + F   +VT              YNT+I+ LC+    
Sbjct: 420 LLHGLFREGNHKDAFAMVIEMLNNGFELSLVT--------------YNTVINCLCQMCMR 465

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A  L  +M  + ++P+  T+ ++I  +C     + A  L  +M       NVV + ++
Sbjct: 466 KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTIL 525

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           + ELC  GK+  A   L  M+  G+ P+  T+N L+
Sbjct: 526 ISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 561



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDWNE 173
            C  DA+     I    + G  D+A + F +  D   + P V  Y  ++      N    
Sbjct: 30  ACTEDALV--AAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGA 87

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              ++  M   GV PNV T+N+++  LC+N ++D A  +LD M + G  PD  ++ T++ 
Sbjct: 88  VVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVS 147

Query: 234 GFCLTGRVNHAK 245
           G C  GRV  A+
Sbjct: 148 GMCKLGRVEEAR 159



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ- 187
           GL   G VD  +    +M+ + V        + I  F  A   + A + F    D G + 
Sbjct: 7   GLPAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRD 66

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P V  +N ++D L +   +     + D M + GV P+ +TYN L+   C   RV+ A+++
Sbjct: 67  PGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKM 126

Query: 248 FVSMESMGC 256
              M   GC
Sbjct: 127 LDEMSRKGC 135


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ + + T+IDG C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +   L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            ++G
Sbjct: 379 LNVG 382



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+    + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM++ G++P+  T
Sbjct: 330 EGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDART 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ V FT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +   L  +M  K +KP+ +TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A     +M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PDA 
Sbjct: 329 KEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDAR 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN V +T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +   L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMLASG 207


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 128/241 (53%), Gaps = 20/241 (8%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI     + A+ +F+  +     P  V   N ++  L++       L L   ++  G 
Sbjct: 368 DGDI-----DRAINVFNEAMEKGLKPNLVLC-NTLVKGLSQQGLILQALKLMNEMSENGC 421

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTII 127
            PD++T++++IN  CK+G VS                D +   ++ K   PD  T+NT+I
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDA--------------DNLVIDAIAKGHLPDVFTFNTLI 467

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           DG CK+  +D A E+  +M +  V P+V+TY S++ G C A  + +    F  MM++G  
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCV 527

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN++T+N++ +  CK  K++EA +L++ M   G+ PD   + TL+ GFC  G ++ A +L
Sbjct: 528 PNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQL 587

Query: 248 F 248
           F
Sbjct: 588 F 588



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 23/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA+ + D + R     P V ++N ++  L KN          +++ + G  PD +T++ 
Sbjct: 268 NEAIRLLDGVGR--GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNS 325

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+ +CK+G + +   +L       F PD  T+ SLI                     K 
Sbjct: 326 IIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKG 385

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            KP+ +  NT++ GL +QG + +A +L  +M +    P++ TY  VI G C     ++A 
Sbjct: 386 LKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDAD 445

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L I+ + +G  P+V TFN ++D  CK  K+D A  ++D M  HGV PD  TYN++L+G 
Sbjct: 446 NLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGL 505

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+       F  M   GC
Sbjct: 506 CKAGKYEDVMGTFKLMMEKGC 526



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------- 115
           G  PD  T+  LIN  C+ G +     V    +     P++V   +L+K           
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 116 -----------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                      C PD  TYN +I+GLCK G V  A  L +    K   P+V T+ ++I G
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +C     + A  +   M + GV P+V+T+N I++ LCK GK ++      LM++ G  P+
Sbjct: 470 YCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPN 529

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             TYN L + FC   +V  A  L   M++ G
Sbjct: 530 IITYNILTESFCKARKVEEALNLIEEMQNKG 560



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 18/223 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    K    D  + +  R+ + G+ PD+ T++ ++N  CK G+      V
Sbjct: 458 PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYED---V 514

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +G            TF  ++ K C P+ ITYN + +  CK   V++A  L  +M++K + 
Sbjct: 515 MG------------TFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLT 562

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASS 211
           P+VV + ++++GFC   D + A +LF  + +Q      + T+N++++       M+ A  
Sbjct: 563 PDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEK 622

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE-LFVSMES 253
           L + M ++G  PD++TY  ++DGFC TG +N     L V +E 
Sbjct: 623 LFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEK 665



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 16/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA+ +F+ M       P V S+N ++  L + +++D    ++ R+   G+ PD+YT +I
Sbjct: 93  QEAVDVFERM-DFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTI 151

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            +  FC+  R      +L  +      P         + C+  A+ Y T+I G  ++   
Sbjct: 152 RMKSFCRTSRPHAARRLLNNM------PS--------QGCESSAVAYCTVIGGFYEENHR 197

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A ELF +M    + P+++ +  +I   C      E++RL  +++ +GV PN+ T N+ 
Sbjct: 198 VEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIF 257

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+   ++EA  LLD  +  G+ PD  TYNTL+ G C   +V  A+     M + G
Sbjct: 258 IQGFCQRAMLNEAIRLLD-GVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEG 315



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 16/229 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ I D M   H   P V ++N +L  L K   Y+ V+  FK +   G  P++ T++I
Sbjct: 477 DNAIEIVDRMWN-HGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNI 535

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L   FCK  +V     ++  +     TPDVV F +L+K              G C  G +
Sbjct: 536 LTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK--------------GFCDNGDL 581

Query: 137 DKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           D A +LF ++ ++      + TY  +I  F    + N A++LF +M + G  P+  T+ V
Sbjct: 582 DGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRV 641

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           ++D  CK G ++   S L + I+ G+ P   T+  +L+  CL  RV+ A
Sbjct: 642 MIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEA 690



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 64/124 (51%)

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           ++G + +A ++F +M   N +P+V +Y +++        +++A ++++ M D+G+ P+V 
Sbjct: 88  RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVY 147

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           TF + M   C+  +   A  LL+ M   G    A  Y T++ GF        A ELF  M
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEM 207

Query: 252 ESMG 255
             +G
Sbjct: 208 LGLG 211



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEA 174
           K   +TY  +I+ L   G  +  +E+  + +  N+   ++   Y   +R +       EA
Sbjct: 37  KHTLLTYKGMIEKLGFHGEFEAMEEVLAETR-MNIDNGLLEGVYIGAMRNYGRKGKIQEA 95

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F  M     +P+V ++N IM+ L +    D+A  +   M   G+ PD +T+   +  
Sbjct: 96  VDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKS 155

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           FC T R + A+ L  +M S GC
Sbjct: 156 FCRTSRPHAARRLLNNMPSQGC 177


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    +    L K + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 173 PSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNEL 232

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P+ VTFT              T+IDG CK G VD A E++ +M  +++ P
Sbjct: 233 FDEMLDXGLVPNGVTFT--------------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 278

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++VTY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D  CK G ++ A    
Sbjct: 279 DLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYR 338

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 339 XRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 208 PDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEI 267

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD+VT+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 268 YKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 327

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 328 EGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 387

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G +   S L+  M + G  P   TYN L++G
Sbjct: 388 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ FCK G
Sbjct: 95  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEG 154

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  TY+
Sbjct: 155 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYS 214

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D   ELF +M D  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 215 VLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 274

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P++VT+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 275 SLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 334

Query: 245 KELFVSM 251
            E    M
Sbjct: 335 FEYRXRM 341


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 20/235 (8%)

Query: 25  YMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++ R  PS    P    S+N +L  L  + H     SL   + + G  P   T+++L+  
Sbjct: 114 HLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKA 173

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
            C     +H    L R+ R+              + KPD  +YNTIIDGLC++G + +A 
Sbjct: 174 HCSDA-AAHIEDAL-RLFRN--------------IPKPDVCSYNTIIDGLCRRGRLAEAL 217

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F +M  K + P VVTYT+VI        +++A ++F EM  +GV PN+VT++ ++D L
Sbjct: 218 DMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGL 277

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G+   A  LLD M++    P+  TY++++DG C    ++ A E+   M   G
Sbjct: 278 CKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQG 332



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 122/250 (48%), Gaps = 34/250 (13%)

Query: 34  PPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  +++N++L   C     H +  L LF+ +      PD+ +++ +I+  C+ GR++   
Sbjct: 162 PTAATYNVLLKAHCSDAAAHIEDALRLFRNIPK----PDVCSYNTIIDGLCRRGRLAEAL 217

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   ++  C  P VVT+T++I                     +   P+ +TY+++IDGL
Sbjct: 218 DMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGL 277

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G    A EL  +M  +   PN +TY+SVI G C  +  +EA  +   M  QG +P+ 
Sbjct: 278 CKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDA 337

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             F  ++  LC  G+  EA++ LD M+  G+ P+  T+       NT+L   C  G +  
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGR 397

Query: 244 AKELFVSMES 253
           A +++ S  +
Sbjct: 398 AFQVYQSTRT 407



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 114/258 (44%), Gaps = 58/258 (22%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  LA+   +D  L +F  +   G+ P+L T+S LI+  CK GR +    +
Sbjct: 230 PTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALEL 289

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+++    P+               ITY+++IDGLCK+  + +A E+  +M+ +  KP
Sbjct: 290 LDRMVKEKKLPNT--------------ITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKP 335

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT--------------------- 192
           +   +  +I G C A    EA     EM+  G++PN VT                     
Sbjct: 336 DAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGEL 395

Query: 193 ---------------------FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
                                F+++++   KN     A  +LD++ +  + P+  T++ +
Sbjct: 396 GRAFQVYQSTRTRSISTDPTTFHLLVESFSKNNIEKAARVVLDMLSERCI-PERETWDAI 454

Query: 232 LDGFCLTGRVNH-AKELF 248
           + G+    +V   AKE++
Sbjct: 455 ISGYWSKKKVRQEAKEIW 472



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 31/227 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL IF  M R   SP  V+ ++ ++  L K     + L L  R+      P+  T+S 
Sbjct: 249 DDALKIFHEMGRRGVSPNLVT-YSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSS 307

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------------- 116
           +I+  CK   +S    VL R+      PD   F  LI  +C                   
Sbjct: 308 VIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAG 367

Query: 117 -KPDAITY-------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
            +P+ +T+       NT++  LC +G + +A +++   + +++  +  T+  ++  F   
Sbjct: 368 IEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFS-K 426

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM-DEASSLLD 214
           N+  +A R+ ++M+ +   P   T++ I+       K+  EA  + D
Sbjct: 427 NNIEKAARVVLDMLSERCIPERETWDAIISGYWSKKKVRQEAKEIWD 473


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  +++    +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
            G ++ +   P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 21/240 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L    K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  ++ A ELF +M    + PN VT+T++I G C     + A   + EM+ Q
Sbjct: 211 VLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    +    LF  +   GL P+  T + LI+  CK G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +         +LR  F+PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 IDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A     +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK G +   S LL  M + G  P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    D    L   +  +G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPS-VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++    V+   +L     P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANVLFDEMLDKGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM+ +G+ P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M ++G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL---------------------IKVCKPDAITYN 124
            +     V   I +    P VV+F +L                     +   +PD  TY+
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A  LF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D MI  G+ PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI  +CK                    PD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM++ G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 15/245 (6%)

Query: 11  ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
           I+TI  ++   + D +   +P    V  +N+++  L K+       SLF+ L +    PD
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPD 734

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
            +T+S LI+     G +   F +   +L +  TP++              ITYN++I GL
Sbjct: 735 NFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNI--------------ITYNSLIYGL 780

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G + +A  LF K++ K + PN +TY ++I  +C      EA +L  +M+++G+QP V
Sbjct: 781 CKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTV 840

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +T+++++  LC  G M+EA  LLD MI++ V P+  TY TL+ G+  +G +    +L+  
Sbjct: 841 ITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDE 900

Query: 251 MESMG 255
           M   G
Sbjct: 901 MHIRG 905



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N M+  L K    + V  + + +   G+ PD Y+++ LI+ +C+ G +   F +   ++
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMV 421

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R+                    +TYNT++ G C    +D A  L+  M  + V PN ++ 
Sbjct: 422 RNGLAATT--------------LTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISC 467

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           ++++ G   A    +A  L+ E + +G+  NV+TFN +++ LCK G+M EA  LLD M +
Sbjct: 468 STLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE 527

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               PD+ TY TL DG+C  G++  A  L   ME +G
Sbjct: 528 LRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 23/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  A  ++  M R+    P   +  IM     ++      +   + +   GL  +L  + 
Sbjct: 199 PGMAAMVYGQM-RIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYH 257

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP---------------- 118
            +++C+C MG       +L  + R   +P+VVT+T L+K  CK                 
Sbjct: 258 AVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKET 317

Query: 119 -----DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                D + Y  +I+G C++G +D A  +  +M+D  +  N+  Y ++I G C      E
Sbjct: 318 GDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEE 377

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
            +++  EM D G++P+  ++N ++D  C+ G M +A  +  +M+++G+     TYNTLL 
Sbjct: 378 VQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           GFC    ++ A  L+  M   G
Sbjct: 438 GFCSLHAIDDALRLWFLMLKRG 459



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 19/230 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL ++  ML+   +P  +S   ++ G L K    +  L+L+K   + GL  ++ T + 
Sbjct: 446 DDALRLWFLMLKRGVAPNEISCSTLLDG-LFKAGKTEQALNLWKETLARGLAKNVITFNT 504

Query: 77  LINCFCKMGRVSHGFVVLGRI--LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +IN  CK+GR++    +L R+  LR                C PD++TY T+ DG CK G
Sbjct: 505 VINGLCKIGRMAEAEELLDRMKELR----------------CPPDSLTYRTLFDGYCKLG 548

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A  L  KM+     P+V  + S I G   A  W++   +  EM  +G+ PN+VT+ 
Sbjct: 549 QLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYG 608

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            ++   CK G + EA +L   M+ +G+ P+ F  + L+  F   G+V+ A
Sbjct: 609 ALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA 658



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 115/256 (44%), Gaps = 33/256 (12%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDL 71
           + P+ AL +F    R+ PS P + S   +L  LA+ + +    +L   L  ++  LFP L
Sbjct: 82  LDPDAALHLF----RLAPSRPSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHL 137

Query: 72  ------YTHS-----ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPD 119
                 +T S     +L+      G++S    V               F  + KV C+P 
Sbjct: 138 AEVYRDFTFSAVSFDLLLRAHADAGQLSSALNV---------------FDGMGKVGCRPS 182

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
             + N +++ L + G    A  ++ +M+   V P+  T   + + +C      +A     
Sbjct: 183 LRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVE 242

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM   G++ N+V ++ +MD  C  G  ++A  +L+ + + G+ P+  TY  L+ G+C  G
Sbjct: 243 EMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 240 RVNHAKELFVSMESMG 255
           R+  A+ +   M+  G
Sbjct: 303 RMEEAERVVKEMKETG 318


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 129/283 (45%), Gaps = 64/283 (22%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSILINCFCKMGRVSHGFV 92
           + SFN  L  +A++     V SLF R+   G   + PDL T+SILI C C+ GR+  GF 
Sbjct: 58  IYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFA 116

Query: 93  VLGRILRSCFT------------------------------------PDVVTFTSLIK-V 115
            LG +++  F                                     PDV + T L+K +
Sbjct: 117 ALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGL 176

Query: 116 CK-----------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           C                        PD ++Y T+I+G  K+G  DKA   + +M D+ + 
Sbjct: 177 CDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRIS 236

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNVVTY+S+I   C A   ++A  +   M+  GV P+ +T+N I+   C +G+  EA   
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 296

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L  M   GV P+  TY +L++  C  GR   A+++F SM   G
Sbjct: 297 LKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRG 339



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
           ++ G  A  +  D +  + +R+      PD+++ +IL+   C   R      +L  +   
Sbjct: 136 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 195

Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
                 PDVV++T++I                     +   P+ +TY++II  LCK   +
Sbjct: 196 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAM 255

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA E+   M    V P+ +TY S++ G+C +    EA     +M   GV+PNVVT+  +
Sbjct: 256 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSL 315

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M+ LCKNG+  EA  + D M + G+ PD  TY TLL G+   G
Sbjct: 316 MNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 358



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 24/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P V S  I+L  L         L L   +      G  PD+ +++ +IN F K G     
Sbjct: 164 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 223

Query: 91  FVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG 129
           +     +L    +P+VVT++S+I  +CK                    PD +TYN+I+ G
Sbjct: 224 YSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 283

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
            C  G   +A     KM+   V+PNVVTY S++   C      EA+++F  M  +G++P+
Sbjct: 284 YCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPD 343

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+  ++      G + E  +LLDLM+++G++PD   +N L+  +    +V+ A  +F 
Sbjct: 344 IATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFS 403

Query: 250 SMESMG 255
            M   G
Sbjct: 404 KMRQHG 409



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 23/255 (9%)

Query: 17  NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
            EAL +   M   R   SPP V S+  ++    K    D   S +  +    + P++ T+
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY 242

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
           S +I   CK   +     VL  ++++   PD +T+ S++                     
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 302

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +P+ +TY ++++ LCK G   +A+++F  M  + ++P++ TY ++++G+       E
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
              L   M+  G+QP+   FN+++    K  K+D+A  +   M QHG+ P+   Y T++D
Sbjct: 363 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 422

Query: 234 GFCLTGRVNHAKELF 248
             C +G V+ A   F
Sbjct: 423 VLCKSGSVDDAMLYF 437


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I+   L++N     +LSLF +    G+    YT SIL+N  CK G+VS    V
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   P  V + +LI                     +  KPD ITYN +I+GLCK
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A++L ++M+D  V P V T+ ++I  +       +   +  EM + G++PNVV+
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 482

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++  CKNGK+ EA ++LD M    V P+A  YN ++D +   G  + A  L   M+
Sbjct: 483 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 542

Query: 253 SMG 255
           S G
Sbjct: 543 SNG 545



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   F  M   H  P  ++ +N ++  L K +       L   +   G+ P + T + LI
Sbjct: 394 AFSTFGQMKSRHIKPDHIT-YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 452

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + + + G++   F+VL  +  +   P+VV++ S++   CK                    
Sbjct: 453 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 512

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN IID   + G  D+A  L  KMK   + P++VTY  +I+G C  +  +EA+ +
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +  + P+ V++N ++   C  G +D+A  L   M ++G++    TY+ L+ G   
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 632

Query: 238 TGRVNHAKELFVSM 251
            GR+N  + L+  M
Sbjct: 633 AGRLNEMEYLYQKM 646



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    +   S F ++ S  + PD  T++ LIN  CK  R+++   +L  + 
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
            +   P V TF +LI                        KP+ ++Y +I++  CK G + 
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +   M  K+V PN   Y ++I  +      ++A  L  +M   G+ P++VT+N+++
Sbjct: 498 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 557

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC   ++ EA  +++ +  H + PDA +YNTL+   C  G ++ A +L   M   G
Sbjct: 558 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 615



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 16  PNEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           P+ AL +   +     +P P +SS N++L  L     +  V   F  L S G  PD +  
Sbjct: 108 PDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAW 167

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +  +      G +     +L R+ R    P             P+A +YN +I G+ + G
Sbjct: 168 NKAVQACVAAGDLGEAVGMLRRMGRDGAPP-------------PNAFSYNVVIAGMWRAG 214

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
               A E+F +M ++ V PN +TY ++I G     D     RL  +M+  G++PN +T+N
Sbjct: 215 RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 274

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           V++  LC+ G+M E S+LLD M    + PD FTY+ L DG    G       LF
Sbjct: 275 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 328



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 14/236 (5%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R    PP   S+N+++  + +       + +F  +    + P+  T++ +
Sbjct: 182 EAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTM 241

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K G +  GF +  +++  C               KP+AITYN ++ GLC+ G + 
Sbjct: 242 IDGHIKGGDLEAGFRLRDQMV--CHG------------LKPNAITYNVLLSGLCRAGRMG 287

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +   L  +M  + + P+  TY+ +  G     D      LF + +  GV     T ++++
Sbjct: 288 ETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 347

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LCK+GK+  A  +L  ++  G+ P    YNTL++G+C TG +  A   F  M+S
Sbjct: 348 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 403



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    +    +    +   +   GL P++ ++  ++N FCK G++     +
Sbjct: 443 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 502

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      P+   + ++I                         P  +TYN +I GLC 
Sbjct: 503 LDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCN 562

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  + +A+E+   + +  + P+ V+Y ++I   CY  + ++A  L   M   G++  V T
Sbjct: 563 QSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 622

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ ++  L   G+++E   L   M+Q+ V P    +N +++ +   G    A++L   M
Sbjct: 623 YHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 14/169 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+   I    ++ +   P + ++N+++  L           +   L++  L PD  +++
Sbjct: 530 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 589

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  C  G +     +  R+ +                 K    TY+ +I GL   G 
Sbjct: 590 TLISACCYRGNIDKALDLQQRMHKYGI--------------KSTVRTYHQLISGLGGAGR 635

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +++ + L+ KM   NV P+   +  ++  +    +  +A+ L  EM+ +
Sbjct: 636 LNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 684


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M +     P   +++I++  L +    +    L + +   G  P   T+++L
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I   C +G       +L  +      P+V T+T LI ++C+                   
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  IT+N +I+G CK+G+V  A +L   M+  N KPN+ TY  ++ G C  +   +A  
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 360

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   ++D G+ P+ VT+N+++D  CK G+++ A ++ + M   G+ PD FT+  L+DG C
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 420

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A  +  SM   G
Sbjct: 421 KLGRLEQANGILGSMVKKG 439



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K    +   ++F  +NS GL PD +T + LI+  CK+GR+     +
Sbjct: 372 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 431

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG +++   + D VTFT+LI                       C   A T+N  +D L K
Sbjct: 432 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 491

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A  +  KM    + P+VVT+T +I G C A +   + ++   M   G  PNV T
Sbjct: 492 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYT 551

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +I++ LC NG+++EA ++L  M   GV P+ FTY  L+      GR++ A ++  +M 
Sbjct: 552 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 611

Query: 253 SMGC 256
             GC
Sbjct: 612 KNGC 615



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++ +L CLAK         +++R+ + G       +  ++N  CK G V    +   ++L
Sbjct: 96  YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 155

Query: 99  RSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLCKQGFV 136
           R  F  D    TSL+                      + C+P+++TY+ +I GLC+ G +
Sbjct: 156 RLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRL 215

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +L  +M +K  +P+  TYT +I+  C     ++A ++  EM  +   PNV T+ ++
Sbjct: 216 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 275

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LC+ GK++EA+ +   M++HG+ P   T+N L++G+C  G V  A +L   ME   C
Sbjct: 276 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 335



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++         D  + +   + +    P+++T++ILI+  C+ G++     V
Sbjct: 232 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 291

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++L+    P ++TF +LI                       CKP+  TYN +++GLC+
Sbjct: 292 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 351

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                KA  L  ++ D  + P+ VTY  ++ GFC     N A  +F  M   G++P+  T
Sbjct: 352 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++D LCK G++++A+ +L  M++ G+  D  T+  L+DG C  G+      LF +M 
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 471

Query: 253 SMGC 256
              C
Sbjct: 472 ENRC 475



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +         +T +  ++   K  +++    +LG++++    P VVT T LI    
Sbjct: 466 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI---- 521

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                     +G C+ G    + ++  +MK     PNV TYT +I G C      EA+ +
Sbjct: 522 ----------EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 571

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M   GV PN  T+ V++    K G++D A  ++  M+++G +P++  Y+ LL GF L
Sbjct: 572 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVL 631

Query: 238 TGRVNHAKEL 247
           +     A+ L
Sbjct: 632 SNTAIGARAL 641



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN  L  L K+   +   ++  ++   GL P + TH+ILI   C+ G  +    +L R+
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            ++               C P+  TY  II+GLC  G V++A+ +   M    V PN  T
Sbjct: 541 KQAG--------------CSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 586

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD------------ELCKNGK 205
           Y  +++    A   + A ++   M+  G QPN   ++ ++              L   G 
Sbjct: 587 YAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGD 646

Query: 206 MDE-------------ASSLLDLM-IQHGVR----------PDAFTYNTLLDGFCLTGRV 241
           +D              +S +  LM + H ++          P    YN L+ G C  GR+
Sbjct: 647 LDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRI 706

Query: 242 NHAKELFVSMESMG 255
             A +L   M   G
Sbjct: 707 IEADQLTQDMVKHG 720



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 59/288 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M++ +   P V +  I++    +       L + +R+   G  P++YT++I
Sbjct: 496 NEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 554

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +IN  C  GRV     +L  +     +P+  T+  L+K                      
Sbjct: 555 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 614

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKEL--------------------------------- 142
           C+P++  Y+ ++ G         A+ L                                 
Sbjct: 615 CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDH 674

Query: 143 FLKMKDKNVKPNVVT---YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            LK++D+  K  V T   Y  ++ G C      EA +L  +M+  G+ P+    ++I + 
Sbjct: 675 ALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII-EH 733

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            CK  K D     + L++ +   P   +Y  ++ G    GRV  A++L
Sbjct: 734 YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKL 781


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY  +I G C   D  +A  L  EM  +G++P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKI 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +B A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AXSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMXASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYN +I GLCK+G + +A +L  +M  K +KP+ +TYT++I G C
Sbjct: 269 IYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              + B A      M+++ ++ + V +  ++  LC+ G+  +A  +L  M+  G++PDA 
Sbjct: 329 KEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAX 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+  LI                     K  KPD ITY T+IDG CK
Sbjct: 270 YKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +B A E   +M ++N++ + V YT++I G C      +A+++   M+  G++P+  T
Sbjct: 330 EGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M + G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 217 VLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A+ L+  M   G++PD  TY TL+DG C  G +B A
Sbjct: 277 SLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTA 336

Query: 245 KE 246
            E
Sbjct: 337 FE 338



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 69  RSDIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+ 
Sbjct: 129 FYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 189 RLGDLDEGFRLKSAMXASG 207


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 57/279 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  IFD MLR    P  ++ FN +L    +   ++   +LF  +   G+  D++T++ 
Sbjct: 273 NRAAEIFDEMLRNGVQPDRIT-FNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNT 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL------------------------ 112
           L++  CK G++   F ++  + R    P+VVT++++                        
Sbjct: 332 LLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS 391

Query: 113 ------------------------IKVCKP--------DAITYNTIIDGLCKQGFVDKAK 140
                                   + VCK         DA+TYN ++ G  KQG  ++ K
Sbjct: 392 IGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVK 451

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            +F +MK + + PN++TY+++I  +     + EA  +F E    G++ +VV ++ ++D L
Sbjct: 452 RVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDAL 511

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           CKNG ++ A S LD M + G+RP+  TYN+++D F  +G
Sbjct: 512 CKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSG 550



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 24/241 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV--SHGFVV 93
           V +F+ ++    ++ + D  + +F+ + S+GL P+L T++ +I+  C  G V  +    +
Sbjct: 220 VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDA-CGKGGVDFNRAAEI 278

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
              +LR+   PD +TF SL+ VC                     + D  TYNT++D +CK
Sbjct: 279 FDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCK 338

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A ++  +M  K++ PNVVTY++VI G+  A   +EA  LF EM    +  + V+
Sbjct: 339 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 398

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++    K G+ +EA ++   M   G++ DA TYN LL G+   G+    K +F  M+
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458

Query: 253 S 253
           +
Sbjct: 459 A 459



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 22/210 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  I   M R H  P  V +++ ++   AK    D  L+LF  +    +  D  +++ L+
Sbjct: 345 AFQIMSEMPRKHIMPN-VVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLL 403

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK----------------- 117
           + + K+GR      V   +  S    D VT+ +L+    K  K                 
Sbjct: 404 SIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIF 463

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY+T+ID   K G   +A E+F + K   +K +VV Y+++I   C       A   
Sbjct: 464 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 523

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
             EM  +G++PNVVT+N I+D   ++G  +
Sbjct: 524 LDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 50/227 (22%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N +LG   K   Y+ V  +F+ + +  +FP+L T+S LI+ + K G       V    
Sbjct: 433 TYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF 492

Query: 98  LRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGF- 135
            ++    DVV +++LI  +CK                    P+ +TYN+IID   + G  
Sbjct: 493 KKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSA 552

Query: 136 -----------VDKAKELFLKMKDKNVKPNVVTY--TSVIRGF--------CYANDWNEA 174
                      V K     LK+ +   +  V       +I+ F        C+A   N  
Sbjct: 553 ECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRG 612

Query: 175 KR-------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           ++       +F +M +  ++PNVVTF+ I++   +    ++AS LL+
Sbjct: 613 RQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLE 659



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           + +I  L + G V+ AK +F    ++     V  ++++I  +  +   +EA ++F  M  
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248

Query: 184 QGVQPNVVTFNVIMDELCKNG-KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            G++PN+VT+N ++D   K G   + A+ + D M+++GV+PD  T+N+LL      G   
Sbjct: 249 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWE 308

Query: 243 HAKELFVSM 251
            A+ LF  M
Sbjct: 309 AARNLFSEM 317


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 21/221 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++NI++    K  +    L +F+ ++  G+   + T++ LI    K G+V     +  
Sbjct: 327 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 386

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
             +R    PD+V + +LI                     K   PD +TYNT++ GLC  G
Sbjct: 387 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 446

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+A++L  +M  + ++P++VTY ++I G+    D  +A R+  EMM++G  P ++T+N
Sbjct: 447 RVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 506

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++  LCKNG+ D+A +++  M+++G+ PD  TY +L++G 
Sbjct: 507 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V+++N+++  L  +        L + +   GL  D++T++ILIN  CK G V     +  
Sbjct: 292 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFE 351

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            + R      VVT+TSLI                     +  +PD + YN +I+     G
Sbjct: 352 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 411

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +D+A E+  +M+ K + P+ VTY +++RG C     +EA++L  EM  +G+QP++VT+N
Sbjct: 412 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++      G + +A  + + M+  G  P   TYN L+ G C  G+ + A+ +   M   
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 255 G 255
           G
Sbjct: 532 G 532



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ +FD ML      P    +N ++G        DT L    R+   G+   + T+++
Sbjct: 238 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 297

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++     GR +  + ++  +       DV               TYN +I+G CK+G V
Sbjct: 298 LVHALFMDGRGTEAYELVEEMGGKGLALDV--------------FTYNILINGHCKEGNV 343

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA E+F  M  + V+  VVTYTS+I          E  +LF E + +G++P++V +N +
Sbjct: 344 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 403

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++    +G +D A  ++  M +  + PD  TYNTL+ G CL GRV+ A++L   M   G
Sbjct: 404 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 17/242 (7%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL-------------FPDLYTHSI 76
           H    P S  N++L   A  + + T L L+ R+ S  L              P     ++
Sbjct: 82  HLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL 141

Query: 77  LINCF-CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
             + F  ++   +  F ++ R L S   P       L ++ +P+A+TYNT+I G C +G 
Sbjct: 142 FADMFRLRLPLCTTTFNIMLRHLCSAGKP-ARALELLRQMPRPNAVTYNTVIAGFCSRGR 200

Query: 136 VDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTF 193
           V  A ++  +M+++  + PN  TY +VI G+C     +EA ++F EM+ +G V+P  V +
Sbjct: 201 VQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMY 260

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N ++   C  GK+D A    D M++ GV     TYN L+    + GR   A EL   M  
Sbjct: 261 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 320

Query: 254 MG 255
            G
Sbjct: 321 KG 322



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL IF+ M R       V ++  ++  L+K         LF      G+ PDL  ++ L
Sbjct: 345 KALEIFENMSR-RGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 403

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------------- 116
           IN     G +   F ++G + +    PD VT+ +L++ +C                    
Sbjct: 404 INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGI 463

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +TYNT+I G   +G V  A  +  +M +K   P ++TY ++I+G C     ++A+ 
Sbjct: 464 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 523

Query: 177 LFIEMMDQGVQPNVVTFNVIMDEL 200
           +  EM++ G+ P+  T+  +++ L
Sbjct: 524 MVKEMVENGITPDDSTYISLIEGL 547


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   ML  L K K+++ V + ++ +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 151 DIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G +++A  L+D M   G++PD  TY TL+DG C  G ++ A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + +++ L+N + ++G ++ GF 
Sbjct: 133 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFK 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C     N+A  L  EM  +G++P+ +
Sbjct: 253 KNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREM 372

Query: 252 ESMG 255
            S G
Sbjct: 373 LSFG 376



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           EGDI       A  +FD + +    P  VS +N ++    +    +    L   ++++G+
Sbjct: 149 EGDIRL-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLNEGFKLKSAMHASGV 202

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G +++A +L  +M  K +KP+ +TYT++I G C
Sbjct: 263 VYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCC 322

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  ++  M+  G++PD  
Sbjct: 323 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTG 382

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 383 TYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 23/222 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF+ +   GL P+  T + LI+  CK GR
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     V  ++L     PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           ++P+  T+ +I++E CK G + + S LL  M + G  P   T
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 58/280 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN+++  + K    D  + +F+ +      PD++T+  L++  CK  R+    ++
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 94  LGRI-LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           L  + +  CF P  VTF  LI                     K C P+ +TYNTII+GLC
Sbjct: 246 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC--------------------YANDW 171
            +G +DKA  L  +M      PN VTY ++I G                      +AN++
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 172 ---------------NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                           EA  L+ +M+++G QPN+V ++ ++D LC+ GK+DEA  +L  M
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  G  P+AFTY++L+ GF  TG    A  ++  M    C
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 464



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L      D  +SL  R+ ++   P+  T+  LIN   K GR   G  +
Sbjct: 291 PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHL 350

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +       +   +++LI                     K C+P+ + Y+ +IDGLC+
Sbjct: 351 LSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 410

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+AKE+  +M +K   PN  TY+S+I+GF    +  +A R++ EM      PN + 
Sbjct: 411 EGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEIC 470

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++V++  LC++GK+ EA  +   M+  G+RPD   Y++++ G C  G V    +LF  M
Sbjct: 471 YSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 529



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK--RLNSTGLFPDLYT 73
           P +A+ +F  M+        V SFN +L  + +   +   L  ++      T + P++ +
Sbjct: 131 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 190

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
            +++I   CK+G V     V   +               I+ C+PD  TY T++DGLCK+
Sbjct: 191 FNLVIKAMCKLGLVDRAIEVFREMA--------------IQKCEPDVFTYCTLMDGLCKE 236

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D+A  L  +M+ +   P+ VT+  +I G C   D     +L   M  +G  PN VT+
Sbjct: 237 DRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTY 296

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N I++ LC  GK+D+A SLLD M+     P+  TY TL++G    GR      L  S+E 
Sbjct: 297 NTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEE 356

Query: 254 MG 255
            G
Sbjct: 357 RG 358



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 23/221 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ ++  L K +  +  + L+K++   G  P++  +S LI+  C+ G++     +L  +
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
           +    TP+  T++SLIK                      C P+ I Y+ +I GLC+ G +
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM--DQGVQPNVVTFN 194
            +A  ++  M  + ++P+VV Y+S+I G C A       +LF EM+  +   QP+VVT+N
Sbjct: 485 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +++  LCK   +  A  LL+ M+  G  PD  T N  L+  
Sbjct: 545 ILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 45/269 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+      P +  ++ ++  L +    D    +   + + G  P+ +T+S L
Sbjct: 381 EAMGLWKKMVE-KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSL 439

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I  F K G       V   + ++   P+ + ++ LI                     +  
Sbjct: 440 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 499

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +PD + Y+++I GLC  G V+   +LF +M  ++ + +P+VVTY  ++R  C  N  + A
Sbjct: 500 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 559

Query: 175 KRLFIEMMDQGVQPNVVTFNV-----------------IMDELC----KNGKMDEASSLL 213
             L   M+D+G  P+++T N+                  +DEL     K  ++  A+ ++
Sbjct: 560 IDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKII 619

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++M+Q  + P+A T+  ++   C   +V 
Sbjct: 620 EVMLQKFLPPNASTWERIIPELCKPKKVQ 648



 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 19  ALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            L +F+ ML +   S P V ++NI+L  L K       + L   +   G  PDL T +I 
Sbjct: 522 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 581

Query: 78  INCFC-KMGRVSHGFVVLGR-ILRSCFTPDVVTFTSLIKV-----CKPDAITYNTIIDGL 130
           +N    K+     G   L   ++R      +V    +I+V       P+A T+  II  L
Sbjct: 582 LNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 641

Query: 131 CK----QGFVDK 138
           CK    Q  +DK
Sbjct: 642 CKPKKVQAIIDK 653


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           ++R     P V ++N+++  + +    D    L   L S G  P+   ++ ++   C + 
Sbjct: 6   LMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIE 65

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
           R      +L  ++R    P+  T   ++                       C  + +TYN
Sbjct: 66  RWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYN 125

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I G+C+QG VD A EL   M+    KP++VTY ++++G C A+ W +A+ L I+M   
Sbjct: 126 AVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQN 185

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
              P+ VTFN I+  LC+ G + +A  +   M + G  P++ TY+T++ G    G++  A
Sbjct: 186 DCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQA 245

Query: 245 KELFVSMESMG 255
            EL   M S G
Sbjct: 246 LELLNEMASKG 256



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 85/141 (60%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +TYN IID +C++G VD+A+EL   +  +  KPN V Y +V++G C    W +A+
Sbjct: 12  CEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAE 71

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM+ +   PN  T NVI++ L + G + + +  L+ M +HG   +  TYN ++ G 
Sbjct: 72  ELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGM 131

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G V+ A EL  +M+S GC
Sbjct: 132 CEQGHVDSALELLSNMQSFGC 152



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 56/281 (19%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + D M+R +  PP  ++ N+++  L++      V    ++++  G   ++ T++ +I+  
Sbjct: 73  LLDEMVREN-CPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGM 131

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           C+ G V     +L  +      PD+VT+ +L+K                      C PD 
Sbjct: 132 CEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDN 191

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +T+NTII  LC++G + +A E+F +M +K   PN  TY+++I G   A    +A  L  E
Sbjct: 192 VTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNE 251

Query: 181 M----------------------------------MDQGVQPNVVTFNVIMDELCKNGKM 206
           M                                   D G+ P  V FN ++  LC+NGK 
Sbjct: 252 MASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKT 311

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           D A  +L  M+ +G  PD  TY  L++G    G +  A+EL
Sbjct: 312 DYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEAREL 352



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 24  DYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + M++M  +   P   +FN ++  L +         +FK++   G  P+  T+S +I   
Sbjct: 177 ELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGL 236

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVV------------TFTSLIKVC--------KPDAI 121
            K G++     +L  +    +  D +                +++V          P  +
Sbjct: 237 AKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTV 296

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            +NT++  LC+ G  D A ++   M      P+ +TY  +I G  Y     EA+ L   +
Sbjct: 297 LFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRL 356

Query: 182 MDQGVQPNVVTFN 194
             + V  N +  N
Sbjct: 357 CSRDVLSNSLIKN 369


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G V  A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   + ++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI                     +   PD ITYNT+I GLCK
Sbjct: 229 FEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +   +A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    +    LF+ +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A     +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 21/235 (8%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           ++G L K   +   + L+ RL   G   +L T + LI+  CK G +     +L ++L   
Sbjct: 462 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 521

Query: 102 FTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAK 140
           F  D +T+ +LI  C                     +PD  TYN +I G+C+ G +D+A 
Sbjct: 522 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 581

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L+ + K +++ PNV TY  +I G+C A+   E ++LF E++ Q ++ N V +N ++   
Sbjct: 582 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 641

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+NG   EA  L D M   G+ P   TY++L+ G C  GR+  AK L   M   G
Sbjct: 642 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 696



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  + +    D  ++L+    S  L P++YT+ ++I+ +CK  ++  G  +
Sbjct: 559 PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKL 618

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L      + V + +LI+  C+                    P   TY+++I G+C 
Sbjct: 619 FTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN 678

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AK L  +M+ + + PNVV YT++I G+C     ++   +  EM    + PN +T
Sbjct: 679 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKIT 738

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL--FVS 250
           + V++D   K+G M  A+ LL  M+  G+ PD  TYN L +GFC  G++    ++  ++S
Sbjct: 739 YTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMS 798

Query: 251 MESM 254
            E +
Sbjct: 799 QEGL 802



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +   +L  L K    +    +F+ +   G+ PD+Y  S  IN FCK G+V     +
Sbjct: 210 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 268

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +   +P+VVT              YN +I GLCK G +D+A     KM    V  
Sbjct: 269 FFDMEKLGVSPNVVT--------------YNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 314

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            ++TY+ +I G      +NEA  +  E +++G  PN V +N ++D  CK G + +A  + 
Sbjct: 315 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 374

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G+ P++ T N+++ GFC  G++  A+ +   M S G
Sbjct: 375 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG 416



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +    L    +P  V  +N ++    K  +    L +   + S G+ P+  T + 
Sbjct: 333 NEANSVLKETLEKGFTPNEVV-YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I  FCK+G++     +L  +L   F+ +   FT++I                     + 
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 451

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+     T++ GLCK+G    A EL+ ++ +K    N+VT  ++I G C   +  EA 
Sbjct: 452 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 511

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL  +M+++G   + +T+N ++   CK GK++E   L   M++ G+ PD FTYN L+ G 
Sbjct: 512 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGM 571

Query: 236 CLTGRVNHAKELF 248
           C  G+++ A  L+
Sbjct: 572 CRIGKLDEAVNLW 584



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 15/208 (7%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           +N  +   + +F+ L + G+FP + T + L++   K   +   + V              
Sbjct: 189 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV-------------- 234

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            F ++ +   PD   ++T I+  CK G V+ A +LF  M+   V PNVVTY ++I G C 
Sbjct: 235 -FETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK 293

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             + +EA R   +M+  GV   ++T++V+++ L K  K +EA+S+L   ++ G  P+   
Sbjct: 294 HGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVV 353

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL+DG+C  G +  A  +   M S G
Sbjct: 354 YNTLIDGYCKMGNLGDALRIRGDMVSKG 381



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 14/197 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +N +      L   + S G+ P   T+S LI+  C +GR+     ++  + 
Sbjct: 634 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 693

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +    P+VV +T+LI               G CK G +DK   +  +M   ++ PN +TY
Sbjct: 694 KEGLLPNVVCYTALI--------------GGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 739

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
           T +I G+  + D   A +L  EM+ +G+ P+ VT+NV+ +  CK GK++E   + D M Q
Sbjct: 740 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQ 799

Query: 219 HGVRPDAFTYNTLLDGF 235
            G+  D  TY TL+ G+
Sbjct: 800 EGLPLDEITYTTLVHGW 816



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    K    +    L   +   G+ PD +T+++LI+  C++G++     +    
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 587

Query: 98  LRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCKQGFV 136
                 P+V T+  +I   CK D                    ++ YNT+I   C+ G  
Sbjct: 588 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +L   M+ K + P   TY+S+I G C      +AK L  EM  +G+ PNVV +  +
Sbjct: 648 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 707

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   CK G+MD+  ++L  M  + + P+  TY  ++DG+  +G +  A +L   M   G
Sbjct: 708 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 766



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  M ++  SP  V+  N++ G L K+ + D      +++   G+   L T+S+L
Sbjct: 264 DAIQLFFDMEKLGVSPNVVTYNNLIHG-LCKHGNLDEAFRFKEKMVKDGVNATLITYSVL 322

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN   K+ + +    VL   L   FTP+               + YNT+IDG CK G + 
Sbjct: 323 INGLMKLEKFNEANSVLKETLEKGFTPN--------------EVVYNTLIDGYCKMGNLG 368

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  +   M  K + PN VT  S+I+GFC      +A+ +  EM+ +G   N   F  I+
Sbjct: 369 DALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 428

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC N + + A   L  M+   +RP+     TL+ G C  G+ + A EL+  +   G
Sbjct: 429 HWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 486



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 25/241 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++++++  L K + ++   S+ K     G  P+   ++ LI+ +CKMG +     + G +
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 98  LRSCFTPDVVTFTSLIK-VCK----------------------PDAITYNTIIDGLCKQG 134
           +     P+ VT  S+I+  CK                      P A T  TII  LC   
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT--TIIHWLCMNS 435

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             + A     +M  +N++PN    T+++ G C     ++A  L+  ++++G   N+VT N
Sbjct: 436 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 495

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LCK G M EA  LL  M++ G   D  TYNTL+ G C  G+V    +L   M   
Sbjct: 496 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 555

Query: 255 G 255
           G
Sbjct: 556 G 556



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +M+   +K+    T   L   +   G+ PD  T+++L N FCK G++  GF +
Sbjct: 734 PNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKI 793

Query: 94  LGRILRSCFTPDVVTFTSLIKVC-KPDAIT 122
              + +     D +T+T+L+    +P A+T
Sbjct: 794 CDYMSQEGLPLDEITYTTLVHGWQQPSALT 823


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 58/280 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN+++  + K    D  + +F+ +      PD++T+  L++  CK  R+    ++
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 94  LGRI-LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           L  + +  CF P  VTF  LI                     K C P+ +TYNTII+GLC
Sbjct: 230 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC--------------------YANDW 171
            +G +DKA  L  +M      PN VTY ++I G                      +AN++
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 172 ---------------NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
                           EA  L+ +M+++G QPN+V ++ ++D LC+ GK+DEA  +L  M
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  G  P+AFTY++L+ GF  TG    A  ++  M    C
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 448



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L      D  +SL  R+ ++   P+  T+  LIN   K GR   G  +
Sbjct: 275 PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHL 334

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +       +   +++LI                     K C+P+ + Y+ +IDGLC+
Sbjct: 335 LSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 394

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D+AKE+  +M +K   PN  TY+S+I+GF    +  +A R++ EM      PN + 
Sbjct: 395 EGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEIC 454

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++V++  LC++GK+ EA  +   M+  G+RPD   Y++++ G C  G V    +LF  M
Sbjct: 455 YSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 513



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK--RLNSTGLFPDLYT 73
           P +A+ +F  M+        V SFN +L  + +   +   L  ++      T + P++ +
Sbjct: 115 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 174

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
            +++I   CK+G V     V   +               I+ C+PD  TY T++DGLCK+
Sbjct: 175 FNLVIKAMCKLGLVDRAIEVFREMA--------------IQKCEPDVFTYCTLMDGLCKE 220

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D+A  L  +M+ +   P+ VT+  +I G C   D     +L   M  +G  PN VT+
Sbjct: 221 DRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTY 280

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N I++ LC  GK+D+A SLLD M+     P+  TY TL++G    GR      L  S+E 
Sbjct: 281 NTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEE 340

Query: 254 MG 255
            G
Sbjct: 341 RG 342



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 23/221 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ ++  L K +  +  + L+K++   G  P++  +S LI+  C+ G++     +L  +
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
           +    TP+  T++SLIK                      C P+ I Y+ +I GLC+ G +
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPNVVTFN 194
            +A  ++  M  + ++P+VV Y+S+I G C A       +LF EM+ Q    QP+VVT+N
Sbjct: 469 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 528

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +++  LCK   +  A  LL+ M+  G  PD  T N  L+  
Sbjct: 529 ILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 45/269 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+      P +  ++ ++  L +    D    +   + + G  P+ +T+S L
Sbjct: 365 EAMGLWKKMVE-KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSL 423

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I  F K G       V   + ++   P+ + ++ LI                     +  
Sbjct: 424 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 483

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           +PD + Y+++I GLC  G V+   +LF +M  ++ + +P+VVTY  ++R  C  N  + A
Sbjct: 484 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 543

Query: 175 KRLFIEMMDQGVQPNVVTFNV-----------------IMDELC----KNGKMDEASSLL 213
             L   M+D+G  P+++T N+                  +DEL     K  ++  A+ ++
Sbjct: 544 IDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKII 603

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++M+Q  + P+A T+  ++   C   +V 
Sbjct: 604 EVMLQKFLPPNASTWERIIPELCKPKKVQ 632



 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 19  ALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            L +F+ ML +   S P V ++NI+L  L K       + L   +   G  PDL T +I 
Sbjct: 506 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 565

Query: 78  INCFC-KMGRVSHGFVVLGR-ILRSCFTPDVVTFTSLIKV-----CKPDAITYNTIIDGL 130
           +N    K+     G   L   ++R      +V    +I+V       P+A T+  II  L
Sbjct: 566 LNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 625

Query: 131 CK----QGFVDK 138
           CK    Q  +DK
Sbjct: 626 CKPKKVQAIIDK 637


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I+   L++N     +LSLF +    G+    YT SIL+N  CK G+VS    V
Sbjct: 166 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   P  V + +LI                     +  KPD ITYN +I+GLCK
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A++L ++M+D  V P V T+ ++I  +       +   +  EM + G++PNVV+
Sbjct: 286 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 345

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++  CKNGK+ EA ++LD M    V P+A  YN ++D +   G  + A  L   M+
Sbjct: 346 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 405

Query: 253 SMG 255
           S G
Sbjct: 406 SNG 408



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   F  M   H  P  ++ +N ++  L K +       L   +   G+ P + T + LI
Sbjct: 257 AFSTFGQMKSRHIKPDHIT-YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 315

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + + + G++   F+VL  +  +   P+VV++ S++   CK                    
Sbjct: 316 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN IID   + G  D+A  L  KMK   + P++VTY  +I+G C  +  +EA+ +
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +  + P+ V++N ++   C  G +D+A  L   M ++G++    TY+ L+ G   
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 495

Query: 238 TGRVNHAKELFVSM 251
            GR+N  + L+  M
Sbjct: 496 AGRLNEMEYLYQKM 509



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    +   S F ++ S  + PD  T++ LIN  CK  R+++   +L  + 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
            +   P V TF +LI                        KP+ ++Y +I++  CK G + 
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +   M  K+V PN   Y ++I  +      ++A  L  +M   G+ P++VT+N+++
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 420

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC   ++ EA  +++ +  H + PDA +YNTL+   C  G ++ A +L   M   G
Sbjct: 421 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 478



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPD 105
           L+  +H D V   F  L S G  PD +  +  +      G +     +L R+ R    P 
Sbjct: 3   LSLGRHAD-VRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP- 60

Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       P+A +YN +I G+ + G    A E+F +M ++ V PN +TY ++I G 
Sbjct: 61  ------------PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 108

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
               D     RL  +M+  G++PN +T+NV++  LC+ G+M E S+LLD M    + PD 
Sbjct: 109 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 168

Query: 226 FTYNTLLDGFCLTGRVNHAKELF 248
           FTY+ L DG    G       LF
Sbjct: 169 FTYSILFDGLSRNGDSKAMLSLF 191



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 14/236 (5%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R    PP   S+N+++  + +       + +F  +    + P+  T++ +
Sbjct: 45  EAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTM 104

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K G +  GF +  +++  C               KP+AITYN ++ GLC+ G + 
Sbjct: 105 IDGHIKGGDLEAGFRLRDQMV--CHG------------LKPNAITYNVLLSGLCRAGRMG 150

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +   L  +M  + + P+  TY+ +  G     D      LF + +  GV     T ++++
Sbjct: 151 ETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILL 210

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LCK+GK+  A  +L  ++  G+ P    YNTL++G+C TG +  A   F  M+S
Sbjct: 211 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 266



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    +    +    +   +   GL P++ ++  ++N FCK G++     +
Sbjct: 306 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 365

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      P+   + ++I                         P  +TYN +I GLC 
Sbjct: 366 LDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCN 425

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  + +A+E+   + +  + P+ V+Y ++I   CY  + ++A  L   M   G++  V T
Sbjct: 426 QSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 485

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ ++  L   G+++E   L   M+Q+ V P    +N +++ +   G    A++L   M
Sbjct: 486 YHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 14/169 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+   I    ++ +   P + ++N+++  L           +   L++  L PD  +++
Sbjct: 393 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 452

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  C  G +     +  R+ +                 K    TY+ +I GL   G 
Sbjct: 453 TLISACCYRGNIDKALDLQQRMHKYGI--------------KSTVRTYHQLISGLGGAGR 498

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +++ + L+ KM   NV P+   +  ++  +    +  +A+ L  EM+ +
Sbjct: 499 LNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 547


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A   FD M R     P V ++  +L    K+K       +F R+     +P+  T+S 
Sbjct: 504 EQARSWFDEM-RSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSA 562

Query: 77  LINCFCKMGRVSHGFVVLGRILRSC----------------FTPDVVTFTSLI------- 113
           LI+  CK G +     V  +++ +                   P+VVT+ +LI       
Sbjct: 563 LIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQ 622

Query: 114 KV--------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           KV              C+P+ I Y+ +IDG CK G +D A+E+FL+M      P+V TYT
Sbjct: 623 KVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYT 682

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I         + A ++  EM++    PNVVT+  ++D L K G++++A +LL LM + 
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEK 742

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  L+DG   TG+ + + +LF  M S GC
Sbjct: 743 GCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGC 779



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 43/268 (16%)

Query: 32  SPPPVSSFNIMLGCLAKNKHY------DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           SPP   ++NI +G +   +        D V  +++ + +     +    +    C C +G
Sbjct: 372 SPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG 431

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYN 124
           +    F +L  ++R  F PD  T+T +I  +C+                    PD  TY 
Sbjct: 432 KFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +ID  CK G +++A+  F +M+     PNVVTYT+++  +  +    +A  +F  M+D 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG----------------VRPDAFTY 228
              PN VT++ ++D LCK G++ +A  + + +I                   + P+  TY
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTY 611

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMGC 256
             L+DG C   +V+ A EL  +M + GC
Sbjct: 612 GALIDGLCKAQKVSDAHELLDAMLAAGC 639



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 117/268 (43%), Gaps = 54/268 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K +       L   + + G  P+   +  LI+ FCK+G++ +   V
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIIDGLCK 132
             R+ +  + P V T+TSLI             KV        C P+ +TY  +IDGL K
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++KA  L   M++K   PNVVTYT++I G       + + +LF +M  +G  PN VT
Sbjct: 726 VGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVT 785

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ---------------------------------H 219
           + V+++  C  G +DEA  LLD M                                   H
Sbjct: 786 YRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESH 845

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
              P A  Y  L+D F   GR+  A EL
Sbjct: 846 ETVPIAPVYGMLIDSFSKAGRLETALEL 873



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 18/216 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            N+++    ++  +D  L    RL   G  P   T++ L+      G+V  GF V   + 
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231

Query: 99  RSCFTPDVVTF----TSLIKVCKP--------------DAITYNTIIDGLCKQGFVDKAK 140
            S F  D  T      +L KV +               D +    +I GL +    ++A 
Sbjct: 232 ASGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAM 291

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
               +M+  +  PNVVTY +++ GF     +   KR+   MM +G  PN   FN ++   
Sbjct: 292 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGY 351

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           C  G    A  L + M   G  P    YN  +   C
Sbjct: 352 CNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSIC 387



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 22/210 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K    D  L LFK++NS G  P+  T+ +LIN  C  G +    ++
Sbjct: 746 PNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLL 805

Query: 94  LGRILRS--------------CFTPDVVTFTSLIKVCK-----PDAITYNTIIDGLCKQG 134
           L  +  +               F+   +    L++  +     P A  Y  +ID   K G
Sbjct: 806 LDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAG 865

Query: 135 FVDKAKELFLKMKDKNVKPNVVT---YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            ++ A EL  ++ + +   N+ +   Y S+I+  C A+   EA  L+ EM  +G+ P+++
Sbjct: 866 RLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLI 925

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            F  ++  L +  K DEA  L       GV
Sbjct: 926 VFVSLVKGLIEVNKWDEALQLCYGRCHEGV 955



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 33/232 (14%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  LA     +    + K ++++G   D  T        CK+GR +     
Sbjct: 202 PSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA--- 258

Query: 94  LGRILRSCFTPDVVTFTSLIK---------------------VCKPDAITYNTIIDGLCK 132
           L  + +  F  D V  T +I                       C P+ +TY T++ G  K
Sbjct: 259 LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 318

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +      K +   M  +   PN   + S++ G+C A D+  A +LF  M   G  P  V 
Sbjct: 319 KKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVA 378

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +N+ +  +C   ++  A  LLDL+ +         Y  +L   C+  +VN A
Sbjct: 379 YNIFIGSICGQEELPNA-ELLDLVEK--------VYEEMLAASCVLNKVNTA 421



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N ++   C+ G  D+A E   ++KD   +P+ VTY ++++    A       R+  EM  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 184 QGVQPNVVTFNVIMDELCKNGK--------------------------------MDEASS 211
            G   +  T       LCK G+                                 +EA S
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMS 292

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L  M  +   P+  TY TLL GF    +    K +   M + GC
Sbjct: 293 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGC 337


>gi|125539212|gb|EAY85607.1| hypothetical protein OsI_06979 [Oryza sativa Indica Group]
          Length = 538

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  FD ML      P  SS NI++   A+   +D    L   ++ +G+ PD+ T+S L
Sbjct: 112 EALKAFDEML-ASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTL 167

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   C+ G+V   + VL  +L               K C+P   TY  I+   C+ G + 
Sbjct: 168 IAGLCRAGKVVEAWGVLDWMLE--------------KNCRPMVQTYTPIVQAYCRDGRIV 213

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AK L  +M+     PNVVTY  +IR  C  + ++E +++ +E   +  +P+ VT+N+ M
Sbjct: 214 EAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYM 273

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + LCK GK  EA  LLD+M+  G+ P A+T++ LL+  C + R+
Sbjct: 274 NGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRL 317



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 25/242 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTHSILINCFCKMGRVSHGF 91
           +N+ +  LA     D V+++F  L  T       G  P++  ++ L+N   + GR     
Sbjct: 55  YNVAMKALALAGDVDEVVAVFSELKWTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 114

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV------------------CKPDAITYNTIIDGLCKQ 133
                +L S   P+  +   LIK+                   +PD  TY+T+I GLC+ 
Sbjct: 115 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIAGLCRA 174

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G V +A  +   M +KN +P V TYT +++ +C      EAK L  EM   G  PNVVT+
Sbjct: 175 GKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLPNVVTY 234

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           NV++  LC + K DE   +L        +P   TYN  ++G C  G+   A EL   M  
Sbjct: 235 NVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELLDVMLG 294

Query: 254 MG 255
            G
Sbjct: 295 EG 296



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 17/222 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI +  L K       L L   +   GL P  YT SIL+NC C   R+     +
Sbjct: 264 PSTVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYL 323

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R     +   VV               YNT++  LC+ G      +L   M  K ++P
Sbjct: 324 LERSTELKWYAGVVA--------------YNTVMSSLCEMGKWRGIMKLLTDMIKKGIEP 369

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  T+  +IR  C     + AK L   +  QG   NVVT+N+++     +GK+ EA+ L+
Sbjct: 370 NTRTFNILIRSLCVGGKSSLAKSL---IHSQGFAANVVTYNILLHWFYYHGKLTEANRLI 426

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +M +  + PD  TY  ++DG C   + + A   F+   + G
Sbjct: 427 SVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLTSG 468



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ + YNT+++ L + G   +A + F +M    V PN  +   +I+     ++++ A  L
Sbjct: 92  PNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL 151

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              +   GV+P+V T++ ++  LC+ GK+ EA  +LD M++   RP   TY  ++  +C 
Sbjct: 152 ---IHKSGVEPDVGTYSTLIAGLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCR 208

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR+  AK L   ME +GC
Sbjct: 209 DGRIVEAKLLMAEMERLGC 227


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V++FNI+L  L +   + +   L ++++ TG FP   T++ L+N +CK GR      +
Sbjct: 177 PNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASEL 236

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           +  +       DV T+  LI  +C+                    P+ ITYNT+I+GL K
Sbjct: 237 IDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVK 296

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +  A ++F +M   N+ PN VTY ++I G C   +  EA RL   M+  G++PN VT
Sbjct: 297 EGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVT 356

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  +++ + K+ +    SS+L+ M   GVR    +Y T++DG C  G +  A +L   M
Sbjct: 357 YGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDM 415



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 21/229 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L    K   Y     L   + S G+  D+ T+++LI+  C+  R + G+++
Sbjct: 212 PTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLI 271

Query: 94  LGRILRSCFTPDVVTFTSLI-------------------KVCK--PDAITYNTIIDGLCK 132
           L R+ ++   P+ +T+ +LI                    +C   P+++TYNT+I G C 
Sbjct: 272 LRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCS 331

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +++A  L   M    ++PN VTY +++ G      +     +   M   GV+   ++
Sbjct: 332 NGNIEEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHIS 391

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +  ++D LCKNG ++EA  LLD M++  V PD  T++ L++GF  TG V
Sbjct: 392 YTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLV 440



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N++LG L K++  D   S FK + +  + P++ T +IL+N  C+ G+     V+
Sbjct: 142 PSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVL 201

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++  +   P               A+TYNT+++  CK+G    A EL   M  K +  
Sbjct: 202 LRKMDETGHFPT--------------AVTYNTLLNWYCKKGRYKAASELIDAMASKGIAA 247

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +V TY  +I   C  +   +   +   M    V PN +T+N +++ L K GK+  A+ + 
Sbjct: 248 DVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVF 307

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + M    + P++ TYNTL+ G C  G +  A  L   M S G
Sbjct: 308 EEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHG 349



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 14/216 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + N+++  L +         L K+LN  G+ P++ T++ L N F +         +L  +
Sbjct: 796 TLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHAL 855

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L + + P    FT+LI+              G+C+ G V  A EL  +MK   V    V 
Sbjct: 856 LENGYAPTCKQFTTLIR--------------GMCRMGNVKGAMELQDEMKILGVSSQGVA 901

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
            +++IRG   +   +EA R+   M++  + P V TF  +M   CK G + +A  L  +M 
Sbjct: 902 MSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVME 961

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           Q  V+ D   YN L+ G C  G +  A +L+  ME 
Sbjct: 962 QCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQ 997



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 23/240 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D+M RM  +P  V+ F+ ++     +       S+F ++NS G  P  +T+  L
Sbjct: 496 EAEYFVDHMSRMGLAPSSVT-FDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGL 554

Query: 78  INCFCKMGRVSHGFVVLGR------ILRSCFTPDVVTFTS---------------LIKVC 116
           +      G ++   + + R       + S F   ++T TS               ++   
Sbjct: 555 LKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNF 614

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAK 175
            PD+ TY ++I GLC++G +  A  L  +  +K +  PN   YTS++ G         A 
Sbjct: 615 VPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAAL 674

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F +M+++GVQP+ + FNV++D   + GKM + + +L  M    +  +  TYN LL G+
Sbjct: 675 YMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGY 734



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 40/262 (15%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L K         +F+ ++   L P+  T++ LI   C  G +     +
Sbjct: 282 PNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRL 341

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDA---------------------ITYNTIIDGLCK 132
              ++     P+ VT+ +L+      A                     I+Y T+IDGLCK
Sbjct: 342 CDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCK 401

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF-------------------CYANDWNE 173
            G +++A +L   M   +V P++VT++ ++ GF                   C   +  E
Sbjct: 402 NGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKE 461

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A   +  M   G   +  T +V++   C+ G+++EA   +D M + G+ P + T++ ++D
Sbjct: 462 ALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIID 521

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            +  +G    A  +F  M S+G
Sbjct: 522 TYGNSGDALKAFSVFDKMNSLG 543



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 15/222 (6%)

Query: 25  YMLRMHPSPPPVSS--FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           +M R    P  + S  +N ML   +++ +    ++L   +      PD +T++ LI   C
Sbjct: 570 FMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLC 629

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           + G++    ++ GR +                +  P+   Y +++DGL K+G    A  +
Sbjct: 630 RKGKMVPALLLSGRAIEK-------------GLLSPNPAMYTSLVDGLLKEGHSKAALYM 676

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F  M ++ V+P+ + +  ++  +      ++   +   M  + +  N+ T+N+++    K
Sbjct: 677 FEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSK 736

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
              M   S L + MI HG  PD  T+++L+ G+C +G ++ A
Sbjct: 737 RHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVA 778



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D M+  H   P   ++  +L  ++K+  +  V S+ +R+   G+     +++ +
Sbjct: 337 EALRLCDVMVS-HGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTM 395

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-----CKPDAITYNTIIDGLCK 132
           I+  CK G +     +L  +L+   +PD+VTF+ L+         P+ + ++T+I   CK
Sbjct: 396 IDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCK 455

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A   +  M       +  T + ++  FC      EA+     M   G+ P+ VT
Sbjct: 456 MGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVT 515

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           F+ I+D    +G   +A S+ D M   G  P  FTY  LL G  + G +N AK
Sbjct: 516 FDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAK 568



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ ML     P  ++ FN++L   ++      V  +   + S  L  +L T++IL+
Sbjct: 673 ALYMFEDMLNEGVQPDAIA-FNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILL 731

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           + + K     HG     ++              +I    PD +T++++I G CK G +D 
Sbjct: 732 HGYSK----RHGMARCSKLYNEM----------IIHGFAPDRLTWHSLILGYCKSGSLDV 777

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A +   K+  +  K +  T   ++   C  N+   A  L  ++   GV PNV T+N + +
Sbjct: 778 AVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFN 837

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              +    DEA  +L  ++++G  P    + TL+ G C  G V  A EL   M+ +G
Sbjct: 838 GFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILG 894



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 16/206 (7%)

Query: 9    GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
            G + T + +EA CI   +L  +   P    F  ++  + +  +    + L   +   G+ 
Sbjct: 838  GFVRTCSFDEARCILHALLE-NGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVS 896

Query: 69   PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
                  S +I    +  +      +LG +L     P V TFT+L+        TY     
Sbjct: 897  SQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMH-------TY----- 944

Query: 129  GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
              CK+G V KA EL   M+  +VK +V  Y  +I G C   D   A +L+ EM  + + P
Sbjct: 945  --CKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWP 1002

Query: 189  NVVTFNVIMDE-LCKNGKMDEASSLL 213
            N   + V++D  LC    + E+  LL
Sbjct: 1003 NTSIYIVLIDSFLCTGNYIVESEKLL 1028



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%)

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N   +  +IR     N   +A   F  M  +G  P+V T N+++  L K+ ++D   S  
Sbjct: 108 NPAVFDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFF 167

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI + V P+  T+N LL+  C  G+   A  L   M+  G
Sbjct: 168 KEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETG 209


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 22/259 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ +F  M R    P  V+ +N ++  L +N   D+ L +F  +   G  P+  +++ LI
Sbjct: 384 AIGLFHRMSRDGVVPNTVT-YNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
             +C +G       +L  +L+   TP +VT+  +IK                      C+
Sbjct: 443 RGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQ 502

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  +Y  +I G CK   ++ A  +F +M D+ + PN VTYT++I G+C     + A R+
Sbjct: 503 PDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARM 562

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M   G +PNV T+NV++  L K      A  L  +M++  + PD  TY+T+++G C 
Sbjct: 563 LERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCN 622

Query: 238 TGRVNHAKELFVSMESMGC 256
            G +  A E+F  M   GC
Sbjct: 623 NGAIPLALEMFNKMVKHGC 641



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +   ML+  P+P  V+ +NI++     +   D  + + + + + G  PD ++++ L
Sbjct: 453 KAMSMLTNMLKGRPTPTLVT-YNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTEL 511

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+ FCK+ ++     +   ++     P+ VT+T+LI               G CK   +D
Sbjct: 512 ISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALI--------------SGYCKDEKLD 557

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  +  +MK    +PNV TY  +I G    N+++ A+ L   M+++ + P+VVT++ ++
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LC NG +  A  + + M++HG  P+  TY++L+      GRV  A+E+F  ++  G
Sbjct: 618 NGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 17/218 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  M+    +N+  D+   +F R++  G  P+  T+S LIN  C  GRV+     
Sbjct: 261 PDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDF 320

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  + R    P V TFT+ I                LC  G ++ A ++F+ MK K  KP
Sbjct: 321 ISEMTRHGVLPTVHTFTAPIV--------------ALCDMGRIEDAWKIFIDMKKKGCKP 366

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TYTS+I G   +     A  LF  M   GV PN VT+N +M+ L +N ++D A  + 
Sbjct: 367 NVYTYTSLISGQRVSR---MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVF 423

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++M +HG  P+  +YN L+ G+C  G    A  +  +M
Sbjct: 424 NMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM 461



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 83/140 (59%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P+ + YN++I+ LCK G V  A+ +  K+    +KP+  TYTS+I G+C   D + A  
Sbjct: 225 QPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFE 284

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M ++G +PN  T++ +++ LC +G+++EA   +  M +HGV P   T+   +   C
Sbjct: 285 IFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALC 344

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR+  A ++F+ M+  GC
Sbjct: 345 DMGRIEDAWKIFIDMKKKGC 364



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 14/197 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++  +L  L K     TV+  + ++   GL P+L  ++ +IN  CK G V     ++ ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +S                KPD  TY ++I G C+   +D A E+F +M ++  +PN  T
Sbjct: 255 FKSGM--------------KPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAAT 300

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C +   NEA     EM   GV P V TF   +  LC  G++++A  +   M 
Sbjct: 301 YSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMK 360

Query: 218 QHGVRPDAFTYNTLLDG 234
           + G +P+ +TY +L+ G
Sbjct: 361 KKGCKPNVYTYTSLISG 377



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 23/224 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++    K    +    +F  +   GL P+  T++ LI+ +CK  ++     +
Sbjct: 503 PDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARM 562

Query: 94  LGRILRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLCK 132
           L R+ RS   P+V T+  LI             ++CK        PD +TY+T+I+GLC 
Sbjct: 563 LERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCN 622

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A E+F KM      PN+ TY+S+I+         EA+ +F E+  QG+ P+ VT
Sbjct: 623 NGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVT 682

Query: 193 FNVIMDELC-KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + V M E+C  +GK+D A   L  MI  G +P   TY+ L+ G 
Sbjct: 683 Y-VKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 71/134 (52%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY T++  L K        + + ++  + ++PN++ Y SVI   C   +  +A+ +  ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
              G++P+  T+  ++   C+N  +D A  + + M + G  P+A TY+TL++G C +GRV
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 242 NHAKELFVSMESMG 255
           N A +    M   G
Sbjct: 315 NEALDFISEMTRHG 328



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 66/109 (60%)

Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
            +  K  + TYT+++      N  +     + +++ +G+QPN++ +N +++ LCK+G + 
Sbjct: 186 QRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVR 245

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +A S+++ + + G++PD FTY +++ G+C    ++ A E+F  M+  GC
Sbjct: 246 DAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGC 294



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 15/246 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M++ H   P + +++ ++  L +    +    +F  L   GL PD  T+  +I
Sbjct: 629 ALEMFNKMVK-HGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMI 687

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-----------VCKPDAITYNTII 127
                 G+V   F  LG ++ +   P + T+  LIK           V  P+A + +T  
Sbjct: 688 EVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFD 747

Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           D +  +   D    L  K+ + + + +   Y +++     +  W EA  L+  M+ Q   
Sbjct: 748 DQIINK---DVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQC 804

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PN  T+   +  L +  K+D A  +   M           Y  L+   C   R   A+ +
Sbjct: 805 PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFV 864

Query: 248 FVSMES 253
           F  M S
Sbjct: 865 FEKMLS 870


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I+   L++N     +LSLF +    G+    YT SIL+N  CK G+VS    V
Sbjct: 118 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 177

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   P  V + +LI                     +  KPD ITYN +I+GLCK
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 237

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A++L ++M+D  V P V T+ ++I  +       +   +  EM + G++PNVV+
Sbjct: 238 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 297

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++  CKNGK+ EA ++LD M    V P+A  YN ++D +   G  + A  L   M+
Sbjct: 298 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 357

Query: 253 SMG 255
           S G
Sbjct: 358 SNG 360



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++N++L  L +        +L   + S  + PD +T+SIL +   + G    
Sbjct: 79  HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 138

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIID 128
              + G+ L++  T    T + L+  +CK                    P  + YNT+I+
Sbjct: 139 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 198

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G C+ G ++ A   F +MK +++KP+ +TY ++I G C A     A+ L +EM D GV P
Sbjct: 199 GYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 258

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            V TFN ++D   + G++++   +L  M ++G++P+  +Y ++++ FC  G++  A  + 
Sbjct: 259 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 318

Query: 249 VSM 251
             M
Sbjct: 319 DDM 321



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   F  M   H  P  ++ +N ++  L K +       L   +   G+ P + T + LI
Sbjct: 209 AFSTFGQMKSRHIKPDHIT-YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 267

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + + + G++   F+VL  +  +   P+VV++ S++   CK                    
Sbjct: 268 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 327

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN IID   + G  D+A  L  KMK   + P++VTY  +I+G C  +  +EA+ +
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +  + P+ V++N ++   C  G +D+A  L   M ++G++    TY+ L+ G   
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 447

Query: 238 TGRVNHAKELFVSM 251
            GR+N  + L+  M
Sbjct: 448 AGRLNEMEYLYQKM 461



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    +   S F ++ S  + PD  T++ LIN  CK  R+++   +L  + 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
            +   P V TF +LI                        KP+ ++Y +I++  CK G + 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +   M  K+V PN   Y ++I  +      ++A  L  +M   G+ P++VT+N+++
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC   ++ EA  +++ +  H + PDA +YNTL+   C  G ++ A +L   M   G
Sbjct: 373 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 430



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M R    PP   S+N+++  + +       + +F  +    + P+  T++ +I+   K G
Sbjct: 5   MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 64

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +  GF +  +++  C               KP+AITYN ++ GLC+ G + +   L  +
Sbjct: 65  DLEAGFRLRDQMV--CHG------------LKPNAITYNVLLSGLCRAGRMGETSALLDE 110

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  + + P+  TY+ +  G     D      LF + +  GV     T +++++ LCK+GK
Sbjct: 111 MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGK 170

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +  A  +L  ++  G+ P    YNTL++G+C TG +  A   F  M+S
Sbjct: 171 VSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 218



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    +    +    +   +   GL P++ ++  ++N FCK G++     +
Sbjct: 258 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 317

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      P+   + ++I                         P  +TYN +I GLC 
Sbjct: 318 LDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCN 377

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  + +A+E+   + +  + P+ V+Y ++I   CY  + ++A  L   M   G++  V T
Sbjct: 378 QSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 437

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ ++  L   G+++E   L   M+Q+ V P    +N +++ +   G    A++L   M
Sbjct: 438 YHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 15/199 (7%)

Query: 58  LFKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           + +R+   G  P + ++++++I    + GR      V           D +T  +++   
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVF----------DEMTERAVL--- 47

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ ITYNT+IDG  K G ++    L  +M    +KPN +TY  ++ G C A    E   
Sbjct: 48  -PNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 106

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM  Q + P+  T++++ D L +NG      SL    +++GV    +T + LL+G C
Sbjct: 107 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 166

Query: 237 LTGRVNHAKELFVSMESMG 255
             G+V+ A+E+  S+ + G
Sbjct: 167 KDGKVSIAEEVLQSLVNAG 185



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 14/169 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+   I    ++ +   P + ++N+++  L           +   L++  L PD  +++
Sbjct: 345 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 404

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  C  G +     +  R+ +                 K    TY+ +I GL   G 
Sbjct: 405 TLISACCYRGNIDKALDLQQRMHKYGI--------------KSTVRTYHQLISGLGGAGR 450

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           +++ + L+ KM   NV P+   +  ++  +    +  +A+ L  EM+ +
Sbjct: 451 LNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 499


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    K    +   +L   ++  G  PDL T+++L+N +     +     V+  ++
Sbjct: 223 YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMV 282

Query: 99  RSCFTPDVVTFTSLIK----VCKPD-----------------AITYNTIIDGLCKQGFVD 137
           RS    D  ++  L+K    V  PD                  ++Y+T+I+  C+     
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTR 342

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA  LF +M+ K +  NVVTYTS+I+ F    + + AK+L  +M + G+ P+ + +  I+
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTIL 402

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D LCK+G +D+A  + + MI+H + PDA +YN+L+ G C +GRV  A +LF  M+   C
Sbjct: 403 DHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 18/211 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN+ L  L +       +  F  +   G  PD+ +++ILIN   + G+V+    +
Sbjct: 112 PDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
              ++RS  +PD        K C         ++ GLC    VD A E+  + +K   VK
Sbjct: 172 WNAMIRSGVSPDN-------KACA-------ALVVGLCHARKVDLAYEMVAEEIKSARVK 217

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            + V Y ++I GFC A    +A+ L   M   G +P++VT+NV+++    N  +  A  +
Sbjct: 218 LSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGV 277

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +  M++ G++ DA++YN LL   C   RV+H
Sbjct: 278 MAEMVRSGIQLDAYSYNQLLKRHC---RVSH 305



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 23/221 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S+N +L    +  H D   + + K +   G F D+ ++S LI  FC+       + +   
Sbjct: 292 SYNQLLKRHCRVSHPDKCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEE 350

Query: 97  ILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGF 135
           + +     +VVT+TSLIK                        PD I Y TI+D LCK G 
Sbjct: 351 MRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGN 410

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VDKA  +F  M +  + P+ ++Y S+I G C +    EA +LF +M  +   P+ +TF  
Sbjct: 411 VDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKF 470

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           I+  L +  K+  A  + D M+  G   D    +TL+   C
Sbjct: 471 IIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 18/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           + A+ +FD M   H S    S  +N  +G L +   ++   +++  +   G     +T+S
Sbjct: 26  DNAVQVFDEM--RHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYS 83

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
             I+  CK+ +      +L  +    F PD+  F              N  +D LC++  
Sbjct: 84  RFISGLCKVKKFDLIDALLSDMETLGFIPDIWAF--------------NVYLDLLCRENK 129

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V  A + F  M  +  +P+VV+YT +I G   A    +A  ++  M+  GV P+      
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAA 189

Query: 196 IMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++  LC   K+D A  ++   I+   V+     YN L+ GFC  GR+  A+ L   M  +
Sbjct: 190 LVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKI 249

Query: 255 GC 256
           GC
Sbjct: 250 GC 251



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + Y + I  L K G +D A ++F +M+  + +     Y   I      + +  A+ ++ +
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWD 69

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   G      T++  +  LCK  K D   +LL  M   G  PD + +N  LD  C   +
Sbjct: 70  MKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENK 129

Query: 241 VNHAKELFVSMESMG 255
           V  A + F  M   G
Sbjct: 130 VGFAVQTFFCMVQRG 144


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 60/283 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN+++G L  + H +    LF ++ + G  P+ +T  IL+  +C+ G  S G  +
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           LG++      P+ V + +LI   CK                    P   T+N+ I  LC 
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCG 264

Query: 133 QGFVDKAKELFLKMK-DKNV---KPNVVTYTSVIRGFCYANDWNEAKRL---------FI 179
            G + +A  +F  M+ D+ +    PNV+TY  ++ GFC      EAK L         FI
Sbjct: 265 SGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI 324

Query: 180 --------------------------EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                                     EM+  G++P++ ++N++MD LCKNG + +A  L+
Sbjct: 325 NLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLM 384

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LMI++G+ PD  TY+TLL G+C  G+V  A  L   M S  C
Sbjct: 385 GLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNC 427



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV------ 87
           P   + N++L  L K        +L +++N  G   D  T +I+IN  C  G++      
Sbjct: 429 PNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEI 488

Query: 88  -----SHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
                +HG   LG +  S     +V  T   K C PD +TY+TII GLCK G +D AK+ 
Sbjct: 489 VNGMWTHGSAALGNLGNSFIG--LVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKK 546

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
           F++M  K ++P+   Y + I  FC     + A ++  +M  +G    + T+N ++  L  
Sbjct: 547 FIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGS 606

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             ++ E   L+D M + GV PD  TYN +L+  C  GR+N A  +   M   G
Sbjct: 607 KNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKG 659



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 45/283 (15%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M R + +   + S+NI L  L +N        + K +   G+ PD+Y+++I+
Sbjct: 309 EAKTLVDTMKR-NANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIV 367

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KV--------------C 116
           ++  CK G +S   +++G ++R+   PD VT+++L+       KV              C
Sbjct: 368 MDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNC 427

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+  T N ++  L K+G + +A+ L  KM +K    + VT   +I   C     ++A  
Sbjct: 428 SPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIE 487

Query: 177 L------------------FIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMDEASSLL 213
           +                  FI ++D  +      P++VT++ I+  LCK G++D+A    
Sbjct: 488 IVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKF 547

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             M+  G++PD+  Y+T +  FC  G+++ A ++   ME  GC
Sbjct: 548 IEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGC 590



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 20/211 (9%)

Query: 46  LAKNKHYDTVLSLFKRLNSTGLFPD----LYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           LAK+  ++  +S FK L S   FP+    +Y +++L+    +  RV          L S 
Sbjct: 85  LAKSGFFNKAISHFKSLRSN--FPEKQPSIYLYNVLLKSCIRENRVE---------LVSW 133

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
              D+V    L +V  P+A T+N +I  LC  G ++ A+ELF KM  +  +PN  T+  +
Sbjct: 134 LYKDMV----LARV-SPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGIL 188

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           +RG+C A   ++   L  +M   G+ PN V +N ++   CK GK  +A  L+D M + G+
Sbjct: 189 VRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGL 248

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            P   T+N+ +   C +G++  A  +F  M+
Sbjct: 249 VPHVETFNSRISALCGSGKILEASRIFRDMQ 279



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 19/241 (7%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           N+A+  F  +    P   P +  +N++L    +    + V  L+K +    + P+ YT +
Sbjct: 92  NKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFN 151

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +LI   C  G +     +  ++      P         + C+P+  T+  ++ G C+ G 
Sbjct: 152 LLIGLLCDSGHLEDARELFDKM------P--------ARGCEPNEFTFGILVRGYCRAGL 197

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             K  EL  +M+   + PN V Y ++I  FC     ++A++L  +M + G+ P+V TFN 
Sbjct: 198 ASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257

Query: 196 IMDELCKNGKMDEASSLL-DLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  LC +GK+ EAS +  D+ I   +    P+  TY  +L GFC  G +  AK L  +M
Sbjct: 258 RISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTM 317

Query: 252 E 252
           +
Sbjct: 318 K 318



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ +ML    K    +   +L   +     F +L +++I +    + G++   ++V
Sbjct: 289 PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIV 348

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L     PD+ +              YN ++DGLCK G +  A+ L   M    + P
Sbjct: 349 LKEMLGIGIEPDIYS--------------YNIVMDGLCKNGMLSDARMLMGLMIRNGILP 394

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY++++ G+C      EA  L  EM+     PN  T NV++  L K G++ EA +LL
Sbjct: 395 DTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLL 454

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M + G   D  T N +++  C  G+++ A E+   M + G
Sbjct: 455 QKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHG 496



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 114/277 (41%), Gaps = 55/277 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++ ++  L K    D     F  + S GL PD   +   I+ FC+ G++S  F V
Sbjct: 522 PDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQV 581

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +      + T+ SLI                     K   PD  TYN +++ LC+
Sbjct: 582 LKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCE 641

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN-------------------- 172
            G ++ A  +  +M  K + PN+ ++  +I+ FC A D+                     
Sbjct: 642 GGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALY 701

Query: 173 --------------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
                         EAK LF   +D+        +  ++D LCK+ K++ AS +L  +I 
Sbjct: 702 TLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLID 761

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G + D  ++  ++DGF   G  + A EL   M  M 
Sbjct: 762 KGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMA 798



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P    YN ++    ++  V+    L+  M    V P   T+  +I   C +    +A+ 
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M  +G +PN  TF +++   C+ G   +   LL  M   G+ P+   YNTL+  FC
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFC 228

Query: 237 LTGRVNHAKELFVSMESMG 255
             G+ + A++L   M   G
Sbjct: 229 KEGKTHDAEKLVDKMREDG 247



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 20/183 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P V ++N ML CL +    +   S+   +   G+ P++ +  ILI  FCK   
Sbjct: 620 MREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACD 679

Query: 87  VSHGFVVLGRILRSCFTPDVV---TFTSLI---KVCKPDAI--------------TYNTI 126
                 V    L  C   + +    F  L+   KV +   +               Y  +
Sbjct: 680 FKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDL 739

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           ID LCK   ++ A ++  ++ DK  + +  ++  VI GF    + + A  L   MM+   
Sbjct: 740 IDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMAS 799

Query: 187 QPN 189
           + N
Sbjct: 800 ESN 802



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           QP++  +NV++    +  +++  S L   M+   V P+A+T+N L+   C +G +  A+E
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 247 LFVSMESMGC 256
           LF  M + GC
Sbjct: 169 LFDKMPARGC 178


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 27/261 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD +++     P VS++  ++    K    +   ++F  +   G  P+L T++ +I
Sbjct: 236 ARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMI 292

Query: 79  NCFCKMGRVSHGFVVLGRILRS--CFTPDVVTFTSLI---------------------KV 115
           N FCK G +     ++ ++  +  C  PD VT+T+LI                     + 
Sbjct: 293 NGFCKKGLMESAMKIVDQMTETEDCM-PDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRN 351

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+P+ +TYN II GLC  G VD+AK +  +M+   +K NV T+TS+++G C     ++A 
Sbjct: 352 CEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAA 411

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R   EM+  G++ +   + V+++E CK GK D+A SLL  M   G+ P   ++N +    
Sbjct: 412 RHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRIL 471

Query: 236 CLTGRVNHAKELFVSMESMGC 256
             +G+ + A  +   M+ +GC
Sbjct: 472 VESGKTDKAGLILRQMKQLGC 492



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 22/203 (10%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D      K +   G+  D   + +++N +CK+G+      +L  +      P V +F ++
Sbjct: 408 DDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAV 467

Query: 113 IKV---------------------CKPDAITYNTIIDGLCK-QGFVDKAKELFLKMKDKN 150
            ++                     C P+ ++Y+T+IDGLCK +G + + +E    M    
Sbjct: 468 FRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNG 527

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
              +   Y+ +++G+C   + + A RLF EM+D G   N+ +F   +  L    K  E  
Sbjct: 528 HHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVE 587

Query: 211 SLLDLMIQHGVRPDAFTYNTLLD 233
              + M +     D   Y  +LD
Sbjct: 588 KFFEEMSRRCPGIDIHKYRRILD 610



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 85/191 (44%), Gaps = 23/191 (12%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
             ++ +++    K    D  +SL K + S G+ P + + + +     + G+     ++L 
Sbjct: 426 AKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILR 485

Query: 96  RILRSCFTPDVVTFTSLIK-VCKP---------------------DAITYNTIIDGLCKQ 133
           ++ +   TP+ ++++++I  +CK                      DA  Y+ ++ G C+ 
Sbjct: 486 QMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCED 545

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G  D A  LF +M D     N+ ++ + ++G        E ++ F EM  +    ++  +
Sbjct: 546 GNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRRCPGIDIHKY 605

Query: 194 NVIMDE-LCKN 203
             I+DE LCKN
Sbjct: 606 RRILDEHLCKN 616


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 23/225 (10%)

Query: 50  KHYDTV--LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           KH  TV  L + + +   G +PDL T++ L+N   K G+     +++  IL     P+ +
Sbjct: 174 KHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAI 233

Query: 108 TFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           T+ SL+  +C                     P  +TYN +I+GLCK G V++A   F++M
Sbjct: 234 TYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQM 293

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
             +N  P+++TY +++   C     +EA ++F+ + D    P ++T+N ++D L + G M
Sbjct: 294 VSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYM 353

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           DEA  L + MI+ G+ PD  T+ +L+ GFC   +V  A E+   M
Sbjct: 354 DEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREM 398



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 23/252 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL I++ +   H   P   ++N +L  L     +D V  +   +  T   P + T++I
Sbjct: 215 DAALIIYNIL--SHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNI 272

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LIN  CK G V        +++    +PD++T+ +L+                       
Sbjct: 273 LINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSN 332

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P  ITYNT+IDGL ++G++D+A +L+ +M +K + P+ +T+ S++ GFC+ +   +A 
Sbjct: 333 CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAV 392

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  EM  +  + N   + ++++ LC+N ++D A  +L++MI    +PD   Y+TL+   
Sbjct: 393 EILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSV 452

Query: 236 CLTGRVNHAKEL 247
              G V  A EL
Sbjct: 453 ADAGMVEEADEL 464



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+M+G   K +   + + L + ++ +G  PD+ T++ +I      G+       
Sbjct: 90  PDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEF 149

Query: 94  L-GRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
             G++ R C  P ++ +T LI++                     C PD +TYN++++   
Sbjct: 150 WRGQLRRGCL-PYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFAS 208

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G  + A  +   +    ++PN +TY S++   C    W+E   +   M      P VV
Sbjct: 209 KEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVV 268

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N++++ LCK G ++ A +    M+     PD  TYNTLL   C  G V+ A ++FV +
Sbjct: 269 TYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLL 328

Query: 252 ESMGC 256
               C
Sbjct: 329 SDSNC 333



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 22/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M R++  P    S N++ G L +    +    + K +  +GL PD+ T++++
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRG-LVRIGRIERASRVLKTMVMSGLVPDVITYNMM 98

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +  FCK  ++     +L  +  S   PDV+T+ ++I+                      C
Sbjct: 99  VGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGC 158

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  I Y  +I+ + K     +A E+   M  +   P++VTY S++        + +A  
Sbjct: 159 LPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAAL 218

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +   ++  G++PN +T+N ++  LC  G  DE   +L +M +    P   TYN L++G C
Sbjct: 219 IIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLC 278

Query: 237 LTGRVNHAKELFVSMESMGC 256
             G V  A   FV M S  C
Sbjct: 279 KCGLVERAINFFVQMVSENC 298



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  T N I+  LCK+G + +A +L   M   N  PN    T++IRG         A R+ 
Sbjct: 21  DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M+  G+ P+V+T+N+++   CK  ++  A  LL+ M   G  PD  TYNT++      
Sbjct: 81  KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDN 140

Query: 239 GRVNHAKELFVSMESMGC 256
           G+ + A E +      GC
Sbjct: 141 GKFDQAVEFWRGQLRRGC 158



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            + H     G ++ +    D+++  + I    P++     +I GL + G +++A  +   
Sbjct: 27  EILHNLCKKGSLMEATKLIDIMSRVNQI----PNSTCSTNLIRGLVRIGRIERASRVLKT 82

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    + P+V+TY  ++ GFC       A  L  +M   G  P+V+T+N I+  L  NGK
Sbjct: 83  MVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGK 142

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLD---GFCLTGRVNHAKELFVSMESMGC 256
            D+A       ++ G  P    Y  L++     C T R   A E+   M   GC
Sbjct: 143 FDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVR---ALEVLEDMAIEGC 193



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 35/106 (33%)

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDL------------------------------ 215
           V+ +  T N I+  LCK G + EA+ L+D+                              
Sbjct: 18  VENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERAS 77

Query: 216 -----MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                M+  G+ PD  TYN ++ GFC   ++  A +L   M   GC
Sbjct: 78  RVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGC 123


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ ML    +  PV   +++       +  D    +FK L   G  PDL   + 
Sbjct: 209 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNT 267

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKP-------------- 118
            ++C  K G V  G ++   I    F PDV +++ LI    K  +               
Sbjct: 268 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 327

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              DA  YN ++DG CK G V KA E+  +MK+K V+P V TY +++ G    +  +EA 
Sbjct: 328 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY 387

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF E   +G++ NVV ++ ++D   K G++DEA  +L+ M++ G+ P+ +T+N+LLD  
Sbjct: 388 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 447

Query: 236 CLTGRVNHAKELFVSMESMGC 256
                +N A   F SM+ M C
Sbjct: 448 VKAEEINEALVCFQSMKEMKC 468



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V SFN +L CL K +  D  LSLF+ +      P+  T++I+I+  C  GR
Sbjct: 79  LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGR 137

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +L  +  +   P+++T   ++                     + C PD +TY +
Sbjct: 138 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 197

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGL K+G VD+A  LF KM D     N V YTS+IR F       +  ++F E++ +G
Sbjct: 198 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 257

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P++   N  MD + K G++++   + + +  +G  PD  +Y+ L+ G    G+     
Sbjct: 258 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 317

Query: 246 ELFVSMESMG 255
            +F +M+  G
Sbjct: 318 NIFHAMKQQG 327



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V S++I++  L K        ++F  +   G   D   ++ +++ FCK G+
Sbjct: 288 IRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGK 347

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V   + +L  +   C  P V T              Y  I+DGL K   +D+A  LF + 
Sbjct: 348 VHKAYEILEEMKEKCVQPTVAT--------------YGAIVDGLAKIDRLDEAYMLFEEA 393

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K K ++ NVV Y+S+I GF      +EA  +  EMM +G+ PNV T+N ++D L K  ++
Sbjct: 394 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA      M +    P+ +TY+ L++G C   + N A   +  M+  G
Sbjct: 454 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 502



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR+   +++
Sbjct: 365 PTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLI 424

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++   TP+V T              +N+++D L K   +++A   F  MK+    P
Sbjct: 425 LEEMMKKGLTPNVYT--------------WNSLLDALVKAEEINEALVCFQSMKEMKCPP 470

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY+ +I G C    +N+A   + +M  QG+ PNVVT+  ++  L K G + +A SL 
Sbjct: 471 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF 530

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           +    +G  PDA ++N L++G     R   A
Sbjct: 531 ERFKANGGIPDAASFNALIEGMSNANRAMEA 561



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            EA  I D M   H S  P + + NIM+  L K +  +    +F+  +  G  PD  T+ 
Sbjct: 139 EEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYC 196

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
            LI+   K G+V   + +  ++L +    + V +TSLI+                     
Sbjct: 197 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRR 256

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKPD    NT +D + K G V+K + +F  ++     P+V +Y+ +I G   A    E 
Sbjct: 257 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARET 316

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F  M  QG   +   +N ++D  CK+GK+ +A  +L+ M +  V+P   TY  ++DG
Sbjct: 317 SNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDG 376

Query: 235 FCLTGRVNHAKELFVSMESMG 255
                R++ A  LF   +S G
Sbjct: 377 LAKIDRLDEAYMLFEEAKSKG 397



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 20/254 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + L+     P   S+  M+  L K         LF ++ +    P  Y ++ +I  + 
Sbjct: 5   FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 64

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAIT 122
             GR    + +L R+      P VV+F S++                    K  +P++ T
Sbjct: 65  SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 124

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN IID LC  G V++A  +  +M+  ++ PN++T   ++   C A    EA ++F    
Sbjct: 125 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 184

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G  P+ VT+  ++D L K G++DEA  L + M+  G   +   Y +L+  F + GR  
Sbjct: 185 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 243 HAKELFVSMESMGC 256
              ++F  +   GC
Sbjct: 245 DGHKIFKELIRRGC 258



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 36/149 (24%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM----------------- 181
           A + F ++K + +KP+ V+YTS+I   C A    EA+ LF +M                 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 182 ------------------MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
                              ++G  P+VV+FN I+  L K  K+DEA SL ++M +    P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEP 120

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ TYN ++D  CL GRV  A  +   ME
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEME 149



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A + F E+  QG++P+ V++  ++  LCK G++ EA  L   M      P A+ YNT++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G+   GR   A +L   +   GC
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGC 84



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL  F  M  M   PP   +++I++  L + + Y+     ++ +   GL P++ T++ 
Sbjct: 454 NEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 512

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
           +I+   K+G ++  + +  R   +   PD  +F +LI+
Sbjct: 513 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIE 550


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 23/243 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++    +    + V  LF  +   G+ PD+ T+S +IN   +MG V     VL 
Sbjct: 243 VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLA 302

Query: 96  RI-LRSCFTPDVVTFTSLIK-------VCK--------------PDAITYNTIIDGLCKQ 133
           ++ LR C +P+V TFTSL+K       +C+              P+ + YNT+I GLC  
Sbjct: 303 KMFLRGC-SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSY 361

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  +  KM+   V PN  TY+++I GF  A D   A  ++ +M+  G  PNVV +
Sbjct: 362 GKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVY 421

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D LC+N   + A  L++ M      P+  T+NT + G C +G+   A ++   M  
Sbjct: 422 TCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQ 481

Query: 254 MGC 256
            GC
Sbjct: 482 YGC 484



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 26/242 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N++L  L KN   D    L   ++  G  PD  +++ +++  C++G+V     +  
Sbjct: 178 VYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSM 237

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
           RI    F P    + +LI   C+                    PD ITY+T+I+ L + G
Sbjct: 238 RI--KSFVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMG 292

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V+ A  +  KM  +   PNV T+TS+++G+       EA  L+  M+ +G +PN V +N
Sbjct: 293 NVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYN 352

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LC  GKM EA S+   M ++GV P+  TY+TL+DGF   G +  A E++  M + 
Sbjct: 353 TLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITN 412

Query: 255 GC 256
           GC
Sbjct: 413 GC 414



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +++ M++    P  V+   ++ G  +  K  + V S+ +++   G+FP+  T+S L
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAV-SVSQKMERNGVFPNETTYSTL 389

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           I+ F K G +     +  +++ +   P+VV +T ++ V                     C
Sbjct: 390 IDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC 449

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P+ IT+NT I GLC  G  + A ++  +M+     PNV TY  V+ G   A    EA +
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  E+ +  ++ N+VT+N I+   C  G    A  +   ++  G +PD+ TYNT++  +C
Sbjct: 510 IVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYC 569

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V  A +L   +   G
Sbjct: 570 KQGEVKTAIQLVDRLTKKG 588



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNT-----IIDGLCKQGFVDKAKELFLKMKDKNV 151
           I R  +  D+     L+++ K + I+ N      +I+   + G  ++A + F ++ +   
Sbjct: 80  IKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGC 139

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           KP+V  Y  V+      N +     ++  M   G++ NV T+N+++  LCKN ++D A  
Sbjct: 140 KPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARK 199

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           LL  M   G  PDA +Y T++   C  G+V  A+EL + ++S
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKS 241



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   +TY T+I  L  +  +D  + L   MK + +  N   +  VI  +  A    +A +
Sbjct: 70  KHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALK 129

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F  + + G +P+V  +N ++D L    K    + + + M + G+  + +TYN LL   C
Sbjct: 130 TFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALC 189

Query: 237 LTGRVNHAKELFVSMESMGC 256
              RV+ A++L   M   GC
Sbjct: 190 KNDRVDAARKLLAEMSYKGC 209



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 22/161 (13%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V+++N +L  L   K     L +   +    +  +L T++ +++ FC  G 
Sbjct: 479 MRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGM 538

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK---------------------PDAITYN 124
                 + G++L     PD +T+ ++I   CK                     PD  TY 
Sbjct: 539 FKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYT 598

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
           +++ G+C    VD+A     KM ++ + PN  T+ +++RG 
Sbjct: 599 SLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 24/245 (9%)

Query: 34  PPVSSFN-IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P   SF  ++LGC  + + ++   +L   +   G   D  T ++++  FC+ GR      
Sbjct: 179 PDARSFRALVLGCCQEGR-FEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 93  VLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLC 131
           + GR++     P+VV +T+ +                     K  KP+  T+ ++IDGLC
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 132 KQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K G+ ++A  LFLK+ K  + KPNV TYT +I G+C       A+ L   M++QG+ PN 
Sbjct: 298 KIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNT 357

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+  ++D  C+ G  D A  L++ M   G  P+ +TYN ++ GFC  G++  A ++   
Sbjct: 358 NTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRM 417

Query: 251 MESMG 255
             S G
Sbjct: 418 ATSQG 422



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 14/235 (5%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +F  M+ M  +PP V ++   +  L K  +      + + +   GL P++YTH+ LI+  
Sbjct: 238 LFGRMVEM-GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
           CK+G     F +  ++++S                KP+  TY  +I G CK+G + +A+ 
Sbjct: 297 CKIGWTERAFRLFLKLVKS-------------SSYKPNVHTYTVMIGGYCKEGKLARAEM 343

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +M ++ + PN  TYT++I G C    ++ A  L  +M  +G  PN+ T+N I+   C
Sbjct: 344 LLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFC 403

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           K GK+ +A  +L +    G+ PD  TY  L+   C  G + +A +LF  M    C
Sbjct: 404 KKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSC 458



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 21/256 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A  +F  +++     P V ++ +M+G   K         L  R+   GL P+  T++ 
Sbjct: 303 ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 362

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  C+ G     F ++ ++    F P++ T+ ++I   CK                  
Sbjct: 363 LIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQG 422

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +TY  +I   CKQG +  A +LF +M + +  P++ TYT++I  +C      +++
Sbjct: 423 LCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQ 482

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF + +  G+ P   T+  ++   C+ GK   A  + + M+QHG  PD  TY  L+ G 
Sbjct: 483 QLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGL 542

Query: 236 CLTGRVNHAKELFVSM 251
           C   R+  A+ LF +M
Sbjct: 543 CKESRLEEARALFETM 558



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 21/224 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++    +   +D    L  ++   G  P++YT++ +I  FCK G++   + V
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV 414

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L         PD VT+T LI                       C PD  TY TII   C+
Sbjct: 415 LRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQ 474

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  ++++++LF K     + P   TYTS+I G+C       A ++F  M+  G  P+ +T
Sbjct: 475 QRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPIT 534

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  ++  LCK  +++EA +L + M+   + P   T  TL   +C
Sbjct: 535 YGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYC 578



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 74/135 (54%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PDA ++  ++ G C++G  ++A  L   M  +    +  T T V+R FC    + +   
Sbjct: 178 RPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF  M++ G  PNVV +   +D LCK G + +A  +L+ M+  G++P+ +T+ +L+DG C
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 237 LTGRVNHAKELFVSM 251
             G    A  LF+ +
Sbjct: 298 KIGWTERAFRLFLKL 312



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 21/202 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++G   K         + +   S GL PD  T+++LI   CK G +++   +
Sbjct: 390 PNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDL 449

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             ++  +   PD+ T+T++I + C+                    P   TY ++I G C+
Sbjct: 450 FNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCR 509

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A ++F +M      P+ +TY ++I G C  +   EA+ LF  M+D+ + P  VT
Sbjct: 510 VGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVT 569

Query: 193 FNVIMDELCKNGKMDEASSLLD 214
              +  E C+  K   A S LD
Sbjct: 570 CVTLAYEYCRRDKTTIAVSFLD 591



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GL ++     A++ F  M    V+P+  ++ +++ G C    + EA  L   M  +G   
Sbjct: 158 GLRQRHHFAHARQAFDGM---GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSL 214

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  T  V++   C+ G+  +   L   M++ G  P+   Y   +DG C  G V  A  + 
Sbjct: 215 DSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVL 274

Query: 249 VSMESMG 255
             M   G
Sbjct: 275 EEMVGKG 281



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIR-GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +A ++ L+++   +   V T   V+R G    + +  A++ F  M   GV+P+  +F  +
Sbjct: 131 EATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGM---GVRPDARSFRAL 187

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C+ G+ +EA +LL  M + G   D+ T   ++  FC  GR      LF  M  MG
Sbjct: 188 VLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMG 246


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 131/277 (47%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +F+ M R     P V ++  ++    K K       +F R+   G  P+  T+  
Sbjct: 340 EQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 77  LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDVVTFTSLI------- 113
           L++  CK G +S  F V  +++                R    P+VVT+ +L+       
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 458

Query: 114 KV--------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           KV              C+P+ I Y+ +IDG CK G +D A+E+FL+M      P+V TYT
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I         + A ++  +M+     PNVVT+  ++D LC+ G+ ++A  LL LM + 
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  L+DG    G+++ + +LF  M   GC
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 615



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 37/248 (14%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     +D    L K +   G  PD  T+S +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 105 DVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELF 143
           DV T+T LI                       C P  +TY  +I    K   V +A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG----------------VQ 187
            +M D   +PN VTY +++ G C A + ++A  ++ +++                   + 
Sbjct: 382 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLA 441

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PNVVT+  ++D LCK  K+D A  LLD M+  G  P+   Y+ L+DGFC  G+++ A+E+
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 248 FVSMESMG 255
           F+ M   G
Sbjct: 502 FLQMTKCG 509



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 121/276 (43%), Gaps = 54/276 (19%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V ++  ++  L K    D    L   + S+G  P+   +  LI+ FCK G++  
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIID 128
              V  ++ +  + P V T+TSLI             KV        C P+ +TY  +ID
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLC+ G  +KA +L   M++K   PNVVTYT++I G   A   + +  LF +M  +G  P
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 617

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQ------------------------------ 218
           N VT+ V+++ LC  G +D+A  LL  M Q                              
Sbjct: 618 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEE 677

Query: 219 ---HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              +G  P A  Y  L+D F   GR+  A EL   M
Sbjct: 678 MESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGR 86
           PP    +NI +G +   +   +  +L L +++    L  +   + +       C C +G+
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
               F ++  ++R  F PD  T              Y+ +I  LC    V+KA  LF +M
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTST--------------YSKVITFLCHATKVEKAFLLFQEM 314

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K   V P+V TYT +I  FC A    +A+ LF EM   G  P VVT+  ++    K  ++
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +A+ +   M+  G RP+  TY  L+DG C  G ++ A E++  +
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I + M+    +P P S FN ++      K Y     L  R+ + G  P    ++I I   
Sbjct: 164 IINMMMTEGCNPNP-SLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTS------LIKVCKPDAITYNTIIDGLCKQGF 135
           C   ++               +PD++          L   C  + +        LC  G 
Sbjct: 223 CGQEKLP--------------SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            DKA +L  +M  K   P+  TY+ VI   C+A    +A  LF EM   GV P+V T+ +
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK G +++A  L + M   G  P   TY  L+  +    +V  A ++F  M   G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 256 C 256
           C
Sbjct: 389 C 389



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 25/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  + K+   D  + +  ++      P++ T++ +I+  C++G       +
Sbjct: 512 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 571

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +     +P+VVT+T+LI                     K C P+ +TY  +I+ LC 
Sbjct: 572 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 631

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA+ L  +MK       +  Y   I+GF  +  +  +  +  EM   G  P    
Sbjct: 632 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPV 689

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ--HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           + +++D   K G+++ A  L   M++    V+ D   Y +L+   CL  +V  A  L+  
Sbjct: 690 YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSE 749

Query: 251 MESMG 255
           M   G
Sbjct: 750 MTRRG 754



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 17/203 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L+     D    + K ++ +G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  I R  F  D V  T +I               GL +  + D+A     +M+  +  P
Sbjct: 95  LDMIEREDFKLDTVLCTHMI--------------SGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY +++ GF         KR+   MM +G  PN   FN ++   C       A  LL
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
           + M   G  P    YN  +   C
Sbjct: 201 NRMTTCGCPPGYVVYNIFIGSIC 223



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 30/231 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K    D  L LF +++  G  P+  T+ +LIN  C  G +    ++
Sbjct: 582 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641

Query: 94  LGRILRSCFTPDVV------------TFTSLIKVCK--------PDAITYNTIIDGLCKQ 133
           LG  ++  + P  +            +F + + + +        P A  Y  +ID   K 
Sbjct: 642 LGE-MKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 700

Query: 134 GFVDKAKELFLKMKD--KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           G ++ A EL  +M +   +VK +   Y S+I+  C A+   EA RL+ EM  +G  P + 
Sbjct: 701 GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELS 760

Query: 192 TFNVIMDELCKNGKMDEASSL-------LDLMIQHGVRPDAFTYNTLLDGF 235
            F  ++  L +  K DEA  L       + L++ +  +   FT+  ++ G+
Sbjct: 761 VFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFTFVVIVVGY 811



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           L   G  P   T++ L+      G+V  GF V   +  S F  D                
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMD--------------RF 76

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T       LCK+G    A ++   ++ ++ K + V  T +I G   A+ ++EA      M
Sbjct: 77  TVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
                 PNVVT+  ++    K  ++     ++++M+  G  P+   +N+L+  +C     
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 193

Query: 242 NHAKELFVSMESMGC 256
            +A +L   M + GC
Sbjct: 194 AYAYKLLNRMTTCGC 208


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 131/277 (47%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +F+ M R     P V ++  ++    K K       +F R+   G  P+  T+  
Sbjct: 340 EQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 77  LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDVVTFTSLI------- 113
           L++  CK G +S  F V  +++                R    P+VVT+ +L+       
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 458

Query: 114 KV--------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           KV              C+P+ I Y+ +IDG CK G +D A+E+FL+M      P+V TYT
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I         + A ++  +M+     PNVVT+  ++D LC+ G+ ++A  LL LM + 
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  L+DG    G+++ + +LF  M   GC
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 615



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 37/248 (14%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     +D    L K +   G  PD  T+S +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 105 DVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELF 143
           DV T+T LI                       C P  +TY  +I    K   V +A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD----------------QGVQ 187
            +M D   +PN VTY +++ G C A + ++A  ++ +++                   + 
Sbjct: 382 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLA 441

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PNVVT+  ++D LCK  K+D A  LLD M+  G  P+   Y+ L+DGFC  G+++ A+E+
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 248 FVSMESMG 255
           F+ M   G
Sbjct: 502 FLQMTKCG 509



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 121/276 (43%), Gaps = 54/276 (19%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V ++  ++  L K    D    L   + S+G  P+   +  LI+ FCK G++  
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIID 128
              V  ++ +  + P V T+TSLI             KV        C P+ +TY  +ID
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLC+ G  +KA +L   M++K   PNVVTYT++I G   A   + +  LF +M  +G  P
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 617

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQ------------------------------ 218
           N VT+ V+++ LC  G +D+A  LL  M Q                              
Sbjct: 618 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEE 677

Query: 219 ---HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              +G  P A  Y  L+D F   GR+  A EL   M
Sbjct: 678 MESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGR 86
           PP    +NI +G +   +   +  +L L +++    L  +   + +       C C +G+
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
               F ++  ++R  F PD  T              Y+ +I  LC    V+KA  LF +M
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTST--------------YSKVITFLCHATKVEKAFLLFQEM 314

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K   V P+V TYT +I  FC A    +A+ LF EM   G  P VVT+  ++    K  ++
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +A+ +   M+  G RP+  TY  L+DG C  G ++ A E++  +
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I + M+    +P P S FN ++      K Y     L  R+ + G  P    ++I I   
Sbjct: 164 IINMMMTEGCNPNP-SLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTS------LIKVCKPDAITYNTIIDGLCKQGF 135
           C   ++               +PD++          L   C  + +        LC  G 
Sbjct: 223 CGQEKLP--------------SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            DKA +L  +M  K   P+  TY+ VI   C+A    +A  LF EM   GV P+V T+ +
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK G +++A  L + M   G  P   TY  L+  +    +V  A ++F  M   G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 256 C 256
           C
Sbjct: 389 C 389



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 25/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  + K+   D  + +  ++      P++ T++ +I+  C++G       +
Sbjct: 512 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 571

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +     +P+VVT+T+LI                     K C P+ +TY  +I+ LC 
Sbjct: 572 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 631

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA+ L  +MK       +  Y   I+GF  +  +  +  +  EM   G  P    
Sbjct: 632 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPV 689

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ--HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           + +++D   K G+++ A  L   M++    V+ D   Y +L+   CL  +V  A  L+  
Sbjct: 690 YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSE 749

Query: 251 MESMG 255
           M   G
Sbjct: 750 MTRRG 754



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 17/203 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++  L+     D    + K ++ +G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  I R  F  D V  T +I               GL +  + D+A     +M+  +  P
Sbjct: 95  LDMIEREDFKLDTVLCTHMI--------------SGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTY +++ GF         KR+   MM +G  PN   FN ++   C       A  LL
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
           + M   G  P    YN  +   C
Sbjct: 201 NRMTTCGCPPGYVVYNIFIGSIC 223



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 23/210 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K    D  L LF +++  G  P+  T+ +LIN  C  G +    ++
Sbjct: 582 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641

Query: 94  LGRILRSCFTPDVV------------TFTSLIKVCK--------PDAITYNTIIDGLCKQ 133
           LG  ++  + P  +            +F + + + +        P A  Y  +ID   K 
Sbjct: 642 LGE-MKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 700

Query: 134 GFVDKAKELFLKMKD--KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           G ++ A EL  +M +   +VK +   Y S+I+  C A+   EA RL+ EM  +G  P + 
Sbjct: 701 GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELS 760

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            F  ++  L +  K DEA  L   +   GV
Sbjct: 761 VFVCLIKGLVEVKKWDEALQLCYGICHEGV 790



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           L   G  P   T++ L+      G+V  GF V   +  S F  D                
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMD--------------RF 76

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           T       LCK+G    A ++   ++ ++ K + V  T +I G   A+ ++EA      M
Sbjct: 77  TVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
                 PNVVT+  ++    K  ++     ++++M+  G  P+   +N+L+  +C     
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 193

Query: 242 NHAKELFVSMESMGC 256
            +A +L   M + GC
Sbjct: 194 AYAYKLLNRMTTCGC 208


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N +L  L K +       L   + S GL P+ +T+++L+  +C++G +     V
Sbjct: 246 PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKV 305

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  + R+   P V               TYN +++G C  G +D+A  +  +M+  NV P
Sbjct: 306 IEIMTRNNLLPTV--------------WTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLP 351

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVTY ++I G     D +E   L  EM  +GV+ N VT+N+I+  +CK G M EA++ L
Sbjct: 352 DVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTL 411

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M ++G+ PD  TYNTL+  +C  G++  A  +   M S G
Sbjct: 412 DKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NI+L  + K  +     +   ++   GL PD  T++ LI  +CK G++   F ++  +
Sbjct: 390 TYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEM 449

Query: 98  LRSCFTPDVVTFTSLIK--------------VCKP-------DAITYNTIIDGLCKQGFV 136
                  D  T  +++               +C         D ++Y  +I G  K    
Sbjct: 450 TSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKG 509

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  L+ +MK++ + P+ +TY SVI G C +   ++A     EM++ G+ P+  T+N+I
Sbjct: 510 DRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNII 569

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   C  G +++A    + MI++  +PD +T N LL G C  G +  A +LF ++ S G
Sbjct: 570 IHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 22/257 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D M     SP  V+ +N ++G   K         +   + S GL  D +T + +
Sbjct: 406 EATTTLDKMEENGLSPDCVT-YNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTI 464

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           ++C C   ++   + +L    +  +  D V++  LI                     +  
Sbjct: 465 LHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  ITYN++I GLC+   VD+A +   +M +  + P+  TY  +I GFC   +  +A +
Sbjct: 525 MPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQ 584

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
              EM++   +P+V T N+++  LC+ G +++A  L + ++  G   D  TYNT++   C
Sbjct: 585 FHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644

Query: 237 LTGRVNHAKELFVSMES 253
             G+  +A +L   ME+
Sbjct: 645 KEGKFENAYDLLTEMEA 661



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 21/242 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST---GLFPDLY 72
           P+ A  IF+ M R++  P  ++  N ++  L +     ++L   + L  +   G+ P+  
Sbjct: 156 PHLATQIFNKMKRLNYRPNLLTC-NTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTN 214

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           + +ILI  +C   +V      + ++  S F             C PD ++YNTI+D L K
Sbjct: 215 SFNILIYGYCLESKVKDALDWVNKM--SEFG------------CVPDTVSYNTILDALLK 260

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  + +A++L L MK K + PN  TY  ++ G+C      EA ++   M    + P V T
Sbjct: 261 RRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWT 320

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N++++  C +GK+DEA  + D M +  V PD  TYNTL+DG C   R   + E++  +E
Sbjct: 321 YNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDG-CSQWR--DSSEVYSLIE 377

Query: 253 SM 254
            M
Sbjct: 378 EM 379



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           S+ I++    K++  D  L+L+  +    + P   T++ +I   C+  +V      L  +
Sbjct: 495 SYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEM 554

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           L +   PD                TYN II G C +G V+KA +   +M +   KP+V T
Sbjct: 555 LENGLVPD--------------ETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYT 600

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
              ++RG C      +A +LF  ++ +G   +VVT+N I+  LCK GK + A  LL  M 
Sbjct: 601 CNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEME 660

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              + PD +TY  ++      GR+  A+E  + M   G
Sbjct: 661 AKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESG 698



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 24/225 (10%)

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
           K    V+ +  R N   L P ++T+++L+N FC  G++   F +   + +    PDVVT+
Sbjct: 300 KEATKVIEIMTRNN---LLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTY 356

Query: 110 TSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKD 148
            +LI  C                     K +A+TYN I+  +CK+G + +A     KM++
Sbjct: 357 NTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEE 416

Query: 149 KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
             + P+ VTY ++I  +C A    +A R+  EM  +G++ +  T N I+  LC   K+DE
Sbjct: 417 NGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDE 476

Query: 209 ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           A +LL    + G   D  +Y  L+ G+    + + A  L+  M+ 
Sbjct: 477 AYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKE 521



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 45/263 (17%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + AL ++D M      P  ++ +N ++G L +++  D  +     +   GL PD  T++I
Sbjct: 510 DRALNLWDEMKERQIMPSTIT-YNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNI 568

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
           +I+ FC  G V   F     ++ + F PDV T   L++ +C+                  
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D +TYNTII  LCK+G  + A +L  +M+ K + P+  TY  +I     A    EA+
Sbjct: 629 KDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAE 688

Query: 176 RLFIEMMDQGV----------QPNVVTFNVI-------------MDELCKNGKMDEASSL 212
              ++M++ G+            NV+T  V              ++ELC   K  +A  L
Sbjct: 689 EFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHL 748

Query: 213 LDLMIQHGVRPDAFTYNTLLDGF 235
              + + GV  + +TY  L++G 
Sbjct: 749 FVEVTKEGVALNKYTYLNLMEGL 771



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 25  YMLRMHPS---PPPVSSF-NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           + L +HP+   P P     +  +G   +         +F ++      P+L T + L+N 
Sbjct: 125 HKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNS 184

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
             +    S   ++  ++L+      VV          P+  ++N +I G C +  V  A 
Sbjct: 185 LVRYPS-SSSILLARQVLKDSIKLGVV----------PNTNSFNILIYGYCLESKVKDAL 233

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +   KM +    P+ V+Y +++          EA+ L ++M  +G+ PN  T+N+++   
Sbjct: 234 DWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGY 293

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           C+ G + EA+ ++++M ++ + P  +TYN L++GFC  G+++ A  +   ME M
Sbjct: 294 CRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM 347



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE---AKRLFIEMMDQGVQPNVVTFNV 195
           A ++F KMK  N +PN++T  +++         +    A+++  + +  GV PN  +FN+
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++   C   K+ +A   ++ M + G  PD  +YNT+LD       +  A++L + M+S G
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKG 278



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCK---NGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           A ++F +M     +PN++T N +M+ L +   +  +  A  +L   I+ GV P+  ++N 
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           L+ G+CL  +V  A +    M   GC
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGC 244


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 21/235 (8%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           ++G L K   +   + L+ RL   G   +L T + LI+  CK G +     +L ++L   
Sbjct: 529 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 588

Query: 102 FTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFVDKAK 140
           F  D +T+ +LI  C                     +PD  TYN +I G+C+ G +D+A 
Sbjct: 589 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 648

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L+ + K +++ PNV TY  +I G+C A+   E ++LF E++ Q ++ N V +N ++   
Sbjct: 649 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           C+NG   EA  L D M   G+ P   TY++L+ G C  GR+  AK L   M   G
Sbjct: 709 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 763



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 21/235 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N+++  + +    D  ++L+    S  L P++YT+ ++I+ +CK  ++  G  +
Sbjct: 626 PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKL 685

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L      + V + +LI+  C+                    P   TY+++I G+C 
Sbjct: 686 FTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN 745

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G ++ AK L  +M+ + + PNVV YT++I G+C     ++   +  EM    + PN +T
Sbjct: 746 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKIT 805

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           + V++D   K+G M  A+ LL  M+  G+ PD  TYN L +GFC  G++   K L
Sbjct: 806 YTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL 860



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 21/235 (8%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N ++  L K  +    + L K++   G   D  T++ LI+  CK G+V  GF + G +++
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 100 SCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
               PD  T+  LI  +C+                    P+  TY  +IDG CK   +++
Sbjct: 622 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
            ++LF ++  +N++ N V Y ++IR +C   +  EA +L  +M  +G+ P   T++ ++ 
Sbjct: 682 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 741

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            +C  G+M++A  L+D M + G+ P+   Y  L+ G+C  G+++    +   M S
Sbjct: 742 GMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSS 796



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +   +L  L K    +    +F+ +   G+ PD+Y  S  IN FCK G+V     +
Sbjct: 277 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 335

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + +   +P+VVT              YN +I GLCK G +D+A     KM    V  
Sbjct: 336 FFDMEKLGVSPNVVT--------------YNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 381

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            ++TY+ +I G      +NEA  +  E +++G  PN V +N ++D  CK G + +A  + 
Sbjct: 382 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 441

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M+  G+ P++ T N+++ GFC  G++  A+ +   M S G
Sbjct: 442 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG 483



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 22/253 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +    L    +P  V  +N ++    K  +    L +   + S G+ P+  T + 
Sbjct: 400 NEANSVLKETLEKGFTPNEVV-YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I  FCK+G++     +L  +L   F+ +   FT++I                     + 
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+     T++ GLCK+G    A EL+ ++ +K    N+VT  ++I G C   +  EA 
Sbjct: 519 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 578

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL  +M+++G   + +T+N ++   CK GK++E   L   M++ G+ PD FTYN L+ G 
Sbjct: 579 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGM 638

Query: 236 CLTGRVNHAKELF 248
           C  G+++ A  L+
Sbjct: 639 CRIGKLDEAVNLW 651



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 15/208 (7%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           +N  +   + +F+ L + G+FP + T + L++   K   +   + V              
Sbjct: 256 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV-------------- 301

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
            F ++ +   PD   ++T I+  CK G V+ A +LF  M+   V PNVVTY ++I G C 
Sbjct: 302 -FETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK 360

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
             + +EA R   +M+  GV   ++T++V+++ L K  K +EA+S+L   ++ G  P+   
Sbjct: 361 HGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVV 420

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
           YNTL+DG+C  G +  A  +   M S G
Sbjct: 421 YNTLIDGYCKMGNLGDALRIRGDMVSKG 448



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N ++    K    +    L   +   G+ PD +T+++LI+  C++G++     +    
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 654

Query: 98  LRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCKQGFV 136
                 P+V T+  +I   CK D                    ++ YNT+I   C+ G  
Sbjct: 655 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +L   M+ K + P   TY+S+I G C      +AK L  EM  +G+ PNVV +  +
Sbjct: 715 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   CK G+MD+  ++L  M  + + P+  TY  ++DG+  +G +  A +L   M   G
Sbjct: 775 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 833



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ +F  M ++  SP  V+  N++ G L K+ + D      +++   G+   L T+S+L
Sbjct: 331 DAIQLFFDMEKLGVSPNVVTYNNLIHG-LCKHGNLDEAFRFKEKMVKDGVNATLITYSVL 389

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN   K+ + +    VL   L   FTP+               + YNT+IDG CK G + 
Sbjct: 390 INGLMKLEKFNEANSVLKETLEKGFTPN--------------EVVYNTLIDGYCKMGNLG 435

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A  +   M  K + PN VT  S+I+GFC      +A+ +  EM+ +G   N   F  I+
Sbjct: 436 DALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTII 495

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC N + + A   L  M+   +RP+     TL+ G C  G+ + A EL+  +   G
Sbjct: 496 HWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 553



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 25/241 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++++++  L K + ++   S+ K     G  P+   ++ LI+ +CKMG +     + G +
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 98  LRSCFTPDVVTFTSLIK-VCK----------------------PDAITYNTIIDGLCKQG 134
           +     P+ VT  S+I+  CK                      P A T  TII  LC   
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT--TIIHWLCMNS 502

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             + A     +M  +N++PN    T+++ G C     ++A  L+  ++++G   N+VT N
Sbjct: 503 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 562

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++  LCK G M EA  LL  M++ G   D  TYNTL+ G C  G+V    +L   M   
Sbjct: 563 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 622

Query: 255 G 255
           G
Sbjct: 623 G 623



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +N +      L   + S G+ P   T+S LI+  C +GR+     ++  + 
Sbjct: 701 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 760

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           +    P+VV +T+LI               G CK G +DK   +  +M   ++ PN +TY
Sbjct: 761 KEGLLPNVVCYTALI--------------GGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           T +I G+  + D   A +L  EM+ +G+ P+ VT+NV+ +  CK GK++E   L +
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAE 862



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M R    PP  ++++ ++  +      +    L   +   GL P++  ++ L
Sbjct: 716 EAFKLHDDM-RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I  +CK+G++      +  +L+   + D+           P+ ITY  +IDG  K G + 
Sbjct: 775 IGGYCKLGQMDK----VVNVLQEMSSYDI----------HPNKITYTVMIDGYSKSGDMK 820

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            A +L  +M  K + P+ VTY  +  GFC      E K L
Sbjct: 821 TAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL 860


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L +   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 240

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 241 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  G+   A+++   M
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREM 360

Query: 252 ESMG 255
            S+G
Sbjct: 361 LSVG 364



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 192 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEI 251

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             R+L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 252 YKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 311

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A +   +M  +N++ + V YT++I G C      +A+++  EM+  G++P++ T
Sbjct: 312 EGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGT 371

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 372 YTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + + G+
Sbjct: 137 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLANGV 190

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK G + +A +L  +M  K +KP+  TYT++I G C
Sbjct: 251 IYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 310

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A +    M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 311 KEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIG 370

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 371 TYTMIINEFCKKGDVWKGSKLLKEMQRNG 399



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   ML  L K +++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 79  LTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 138

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  ++YNT+++G  + G +D+   L   
Sbjct: 139 DI--------RVAQSVF--DAITKWGL----RPSVVSYNTLMNGYIRLGDLDEGFRLKSA 184

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V+P+V TY+ +I G C  +  ++A  LF EM+ +G+ PN VTF  ++D  CKNG+
Sbjct: 185 MLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 244

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A +L   M   G
Sbjct: 245 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKG 294


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 140/306 (45%), Gaps = 66/306 (21%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYT 73
           P++A+ +F+ M     +P  + ++N ++  L K+ + +    L + +   G    PD+ T
Sbjct: 113 PDQAVKLFENMESSRVNPD-IFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVT 171

Query: 74  HSILINC-FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
           ++ LIN   CK G V     +L  +  +   PDV+T+ S+I                   
Sbjct: 172 YNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM 231

Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PD +T+NT++DG CK G + +A E+  +M  +N+ P+V+TYT ++ G C       A
Sbjct: 232 SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 291

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS------------------------ 210
             L  E++ QG  P+V+ +  ++D LCK+G+++EA                         
Sbjct: 292 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPL 351

Query: 211 --------------------SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
                               SL+  ++  G  PD  TYNTL+DG C   RV  A +L   
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE 411

Query: 251 MESMGC 256
           M S+GC
Sbjct: 412 MASLGC 417



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 122/260 (46%), Gaps = 27/260 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+  FD+          V S+N +L  L K+ H      ++K L  +G  P+L T  
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
           ILI   CK G+ +     L  +      PDV  F  LI                      
Sbjct: 67  ILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVVTYTSVIR-GFCYANDW 171
              PD  TYNT+I GLCK G ++KA+EL  +M  +  K  P++VTY ++I  G C   D 
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDV 186

Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            EA  +   M   G  P+V+T+N I+  LC  G++ EA+ +L  M      PD  T+NTL
Sbjct: 187 EEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTL 243

Query: 232 LDGFCLTGRVNHAKELFVSM 251
           LDGFC  G +  A E+   M
Sbjct: 244 LDGFCKAGMLPRALEVLEEM 263



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 30/252 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF-- 91
           P V ++ I++  L +         L + +   G  PD+  ++ L++  CK G +      
Sbjct: 270 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL 329

Query: 92  --------------------------VVLGRILRSCFTPDVVTFTS--LIKVCKPDAITY 123
                                     +VLG +++       V+  S  + +   PD +TY
Sbjct: 330 VKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTY 389

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT+IDGLCK   V +A +L  +M      PN VT  SV+ G C     ++A  L +EM  
Sbjct: 390 NTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSR 449

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +   PNVV +  ++D LCK+ +MD+A  +LD M   GV  D F Y  L+      GRV  
Sbjct: 450 KRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAE 509

Query: 244 AKELFVSMESMG 255
           A  ++  M + G
Sbjct: 510 AMAMYDEMVARG 521



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 14/198 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+ ++NI+LG L K+      +SL   L + G  PD+ T++ LI+  CK  RV      
Sbjct: 349 PPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVRE---- 404

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                 +C   D +        C P+ +T  +++ GLC+ G VD A  L ++M  K   P
Sbjct: 405 ------ACDLADEMASLG----CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 454

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV YTS+I G C ++  ++A  +   M  QGV  +   +  ++  +   G++ EA ++ 
Sbjct: 455 NVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMY 514

Query: 214 DLMIQHGVRPDAFTYNTL 231
           D M+  G  PD  T  TL
Sbjct: 515 DEMVARGFLPDGSTSKTL 532



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 3/143 (2%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +T+  +I G CK G   +A E    + + +V P+V  +  +I G     + ++A 
Sbjct: 58  CSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAV 117

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR--PDAFTYNTLLD 233
           +LF  M    V P++ T+N ++  LCK+G +++A  LL+ MI+ G +  PD  TYNTL++
Sbjct: 118 KLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLIN 177

Query: 234 -GFCLTGRVNHAKELFVSMESMG 255
            G C  G V  A E+   M+  G
Sbjct: 178 AGICKDGDVEEALEILDGMKLAG 200



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D  +YN ++D L K G   +  +++  +      PN+VT+  +IRG C A     A  
Sbjct: 24  KHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALE 83

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               + +  V P+V  FN ++  L K+G  D+A  L + M    V PD FTYNT++ G C
Sbjct: 84  FLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLC 143

Query: 237 LTGRVNHAKELFVSMESMG 255
            +G +  A+EL   M   G
Sbjct: 144 KSGNLEKARELLEEMIRRG 162


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N +L CL K       L  F+ +      P+L T+++LI+  CK G V   F V
Sbjct: 371 PSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAA-PNLSTYNVLIDMLCKAGEVEAAFKV 429

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   P+V+T   +I                     K+C PD +T+ ++IDGL K
Sbjct: 430 RDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGK 489

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG VD A  L+ +M D +  PN V YTS+I+ F       +  ++F EM+ +G  P++  
Sbjct: 490 QGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL 549

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N  MD + K G+  +  +L + +   G  PD  +Y+ L+ G    G      ELF +M+
Sbjct: 550 LNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMK 609

Query: 253 SMGC 256
             GC
Sbjct: 610 EQGC 613



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 15/233 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF  M+    SP  +   N  + C+ K        +LF+ + S G  PD+ ++SILI+  
Sbjct: 534 IFKEMIHRGCSPD-LRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGL 592

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            K G     + +               +    + C  D   YNT IDG CK G V+KA +
Sbjct: 593 VKAGFARETYELF--------------YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQ 638

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +MK K  +P VVTY SVI G    +  +EA  LF E    G++ NVV ++ ++D   
Sbjct: 639 LLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFG 698

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           K G++DEA  +++ ++Q G+ P+ +T+N LLD       +N A   F +M+++
Sbjct: 699 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNL 751



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  + + M +     P V ++  ++  LAK    D    LF+   S GL  ++  +S 
Sbjct: 634 NKAYQLLEEM-KTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSS 692

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ F K+GR+   ++++  +++   TP+V T              +N ++D L K   +
Sbjct: 693 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT--------------WNCLLDALVKAEEI 738

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A   F  MK+    PN +TY+ +I G C    +N+A   + EM  QG++PN +T+  +
Sbjct: 739 NEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTM 798

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K G + EASSL +    +G  PD+ +YN +++G   + R   A ++F      GC
Sbjct: 799 IAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGC 858



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + NIM+  L K K  D   S+F+ +N     PD  T   LI+   K GRV   + +
Sbjct: 440 PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRL 499

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++L S   P+ V +TSLIK                      C PD    N  +D + K
Sbjct: 500 YEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFK 559

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G   K + LF ++K +   P+V++Y+ +I G   A    E   LF  M +QG   +   
Sbjct: 560 AGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHA 619

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N  +D  CK+GK+++A  LL+ M   G +P   TY +++DG     R++ A  LF   +
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 679

Query: 253 SMG 255
           S G
Sbjct: 680 SNG 682



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 109/263 (41%), Gaps = 31/263 (11%)

Query: 7   GEGDITTITPNEALCI---------------FDYM--LRMHPSPPPVSSFNIMLGCLAKN 49
           GE  I    P+   CI               FD +  +R     P  S++  ++G L+  
Sbjct: 152 GEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSV 211

Query: 50  KHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF 109
           +  D +L+LF ++   G    ++  + +I  F + GR+     +L  +  +C   D+V  
Sbjct: 212 QESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVL- 270

Query: 110 TSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                        YN  ID   K G VD A + F ++K   + P+ VTYTS+I   C  N
Sbjct: 271 -------------YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGN 317

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             +EA  +F +M      P    +N ++      GK DEA SLL+     G  P    YN
Sbjct: 318 RLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYN 377

Query: 230 TLLDGFCLTGRVNHAKELFVSME 252
            +L      GR+  A   F  M+
Sbjct: 378 CILTCLGKKGRLGEALRTFEEMK 400



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A+  F +  R         +++ +L  +AKN  +D    +   ++  G  P   T   
Sbjct: 109 NQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIE 168

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKPDAIT---------- 122
           LI    K  ++  GF ++  + +  F P    +T+LI     V + D +           
Sbjct: 169 LILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELG 228

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  + T+I    ++G +D A  L  +MK   +  ++V Y   I  F  A   + A 
Sbjct: 229 YEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAW 288

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F E+   G+ P+ VT+  ++  LCK  ++DEA  + + M Q+   P A+ YNT++ G+
Sbjct: 289 KFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGY 348

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G+ + A  L    ++ GC
Sbjct: 349 GSAGKFDEAYSLLERQKARGC 369



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P  V ++N +L  L K +  +  L  F+ + +    P+  T+SI
Sbjct: 704 DEAYLIMEELMQKGLTPN-VYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSI 762

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  C++ + +  FV    + +                 KP+ ITY T+I GL K G +
Sbjct: 763 LINGLCRVRKFNKAFVFWQEMQKQGL--------------KPNTITYTTMIAGLAKAGNI 808

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF + K     P+  +Y ++I G  Y+    EA ++F E   +G   +  T   +
Sbjct: 809 AEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIAL 868

Query: 197 MDELCKNGKMDEAS 210
           +D L K+  +++A+
Sbjct: 869 LDALQKDECLEQAA 882


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I+   L++N     +LSLF +    G+    YT SIL+N  CK G+VS    V
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   P  V + +LI                     +  KPD ITYN +I+GLCK
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +  A++L ++M+D  V P V T+ ++I  +       +   +  EM + G++PNVV+
Sbjct: 419 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 478

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  I++  CKNGK+ EA ++LD M    V P+A  YN ++D +   G  + A  L   M+
Sbjct: 479 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 538

Query: 253 SMG 255
           S G
Sbjct: 539 SNG 541



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    +    +   S F ++ S  + PD  T++ LIN  CK  R+++   +L  + 
Sbjct: 374 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 433

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
            +   P V TF +LI                        KP+ ++Y +I++  CK G + 
Sbjct: 434 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 493

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A  +   M  K+V PN   Y ++I  +      ++A  L  +M   G+ P++VT+N+++
Sbjct: 494 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 553

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LC   ++ EA  +++ +  H + PDA +YNTL+   C  G ++ A +L   M   G
Sbjct: 554 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 611



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A   F  M   H  P  ++ +N ++  L K +       L   +   G+ P + T + LI
Sbjct: 390 AFSTFGQMKSRHIKPDHIT-YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 448

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + + + G++   F+VL  +  +   P+VV++ S++   CK                    
Sbjct: 449 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 508

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN IID   + G  D+A  L  KMK   + P++VTY  +I+G C  +  +EA+ +
Sbjct: 509 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 568

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +  + P+ V++N ++   C  G +D+A  L   M ++G++    TY+ L+ G   
Sbjct: 569 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 628

Query: 238 TGRVNHAKELFVSM 251
            GR+   + L+  M
Sbjct: 629 AGRLIEMEYLYQKM 642



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 14/234 (5%)

Query: 16  PNEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           P+ AL +   +     +P P +SS N++L  L     +  V   F  L S G  PD +  
Sbjct: 104 PDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAW 163

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           +  +      G +     +L R+ R    P             P+A +YN +I G+ + G
Sbjct: 164 NKAVQACVAAGDLGEAVGMLRRMGRDGAPP-------------PNAFSYNVVIAGMWRAG 210

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
               A E+F +M ++ V PN +TY ++I G     D      L  +M+  G++PN +T+N
Sbjct: 211 RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYN 270

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           V++  LC+ G+M E S+LLD M    + PD FTY+ L DG    G       LF
Sbjct: 271 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 324



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 14/236 (5%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ +   M R    PP   S+N+++  + +       + +F  +    + P+  T++ +
Sbjct: 178 EAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTM 237

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K G +  GF +  +++  C               KP+AITYN ++ GLC+ G + 
Sbjct: 238 IDGHIKGGDLEAGFSLRDQMV--CHG------------LKPNAITYNVLLSGLCRAGRMG 283

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +   L  +M  + + P+  TY+ +  G     D      LF + +  GV     T ++++
Sbjct: 284 ETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILL 343

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LCK+GK+  A  +L  ++  G+ P    YNTL++G+C TG +  A   F  M+S
Sbjct: 344 NGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 399



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 21/239 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN ++    +    +    +   +   GL P++ ++  ++N FCK G++     +
Sbjct: 439 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 498

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +      P+   + ++I                         P  +TYN +I GLC 
Sbjct: 499 LDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCN 558

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  + +A+E+   + +  + P+ V+Y ++I   CY  + ++A  L   M   G++  V T
Sbjct: 559 QSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 618

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ ++  L   G++ E   L   M+Q+ V P    +N +++ +   G    A++L   M
Sbjct: 619 YHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 677



 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           PN+   I    ++ +   P + ++N+++  L           +   L++  L PD  +++
Sbjct: 526 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 585

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI+  C  G +     +  R+ +                 K    TY+ +I GL   G 
Sbjct: 586 TLISACCYRGNIDKALDLQQRMHKYGI--------------KSTVRTYHQLISGLGGAGR 631

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           + + + L+ KM   NV P+   +  ++  +    +  +A+ L  EM+ +
Sbjct: 632 LIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 680


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   ++ +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMIDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +    L P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +   +  S   PDV T              Y+ +I+GLCK+  +D A ELF +M D  + 
Sbjct: 193 LKNAMQASGVQPDVYT--------------YSVLINGLCKESKMDDANELFDEMIDNGLV 238

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +D M   G++PD  TY TL+DG C  G +  A E
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M +     P   +++I++  L +    +    L + +   G  P   T+++L
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I   C +G       +L  +      P+V T+T LI ++C+                   
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  IT+N +I+G CK+G+V  A +L   M+  N KPN+ TY  ++ G C  +   +A  
Sbjct: 344 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 403

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   ++D G+ P+ VT+N+++D  CK G+++ A ++ + M   G+ PD FT+  L+DG C
Sbjct: 404 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 463

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A  +  SM   G
Sbjct: 464 KLGRLEQANGILGSMVKKG 482



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K    +   ++F  +NS GL PD +T + LI+  CK+GR+     +
Sbjct: 415 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 474

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG +++   + D VTFT+LI                       C   A T+N  +D L K
Sbjct: 475 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 534

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A  +  KM    + P+VVT+T +I G C A +   + ++   M   G  PNV T
Sbjct: 535 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYT 594

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +I++ LC NG+++EA ++L  M   GV P+ FTY  L+      GR++ A ++  +M 
Sbjct: 595 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 654

Query: 253 SMGC 256
             GC
Sbjct: 655 KNGC 658



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++ +L CLAK         +++R+ + G       +  ++N  CK G V    +   ++L
Sbjct: 139 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 198

Query: 99  RSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLCKQGFV 136
           R  F  D    TSL+                      + C+P+++TY+ +I GLC+ G +
Sbjct: 199 RLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRL 258

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +L  +M +K  +P+  TYT +I+  C     ++A ++  EM  +   PNV T+ ++
Sbjct: 259 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 318

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LC+ GK++EA+ +   M++HG+ P   T+N L++G+C  G V  A +L   ME   C
Sbjct: 319 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 378



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++         D  + +   + +    P+++T++ILI+  C+ G++     V
Sbjct: 275 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 334

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++L+    P ++TF +LI                       CKP+  TYN +++GLC+
Sbjct: 335 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 394

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                KA  L  ++ D  + P+ VTY  ++ GFC     N A  +F  M   G++P+  T
Sbjct: 395 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++D LCK G++++A+ +L  M++ G+  D  T+  L+DG C  G+      LF +M 
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 514

Query: 253 SMGC 256
              C
Sbjct: 515 ENRC 518



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +         +T +  ++   K  +++    +LG++++    P VVT T LI    
Sbjct: 509 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI---- 564

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                     +G C+ G    + ++  +MK     PNV TYT +I G C      EA+ +
Sbjct: 565 ----------EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 614

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M   GV PN  T+ V++    K G++D A  ++  M+++G +P++  Y+ LL GF L
Sbjct: 615 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVL 674

Query: 238 TGRVNHAKEL 247
           +     A+ L
Sbjct: 675 SNTAIGARAL 684



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN  L  L K+   +   ++  ++   GL P + TH+ILI   C+ G  +    +L R+
Sbjct: 524 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 583

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            ++               C P+  TY  II+GLC  G V++A+ +   M    V PN  T
Sbjct: 584 KQAG--------------CSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 629

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD------------ELCKNGK 205
           Y  +++    A   + A ++   M+  G QPN   ++ ++              L   G 
Sbjct: 630 YAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGD 689

Query: 206 MDE-------------ASSLLDLM-IQHGVR----------PDAFTYNTLLDGFCLTGRV 241
           +D              +S +  LM + H ++          P    YN L+ G C  GR+
Sbjct: 690 LDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRI 749

Query: 242 NHAKELFVSMESMG 255
             A +L   M   G
Sbjct: 750 IEADQLTQDMVKHG 763



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 59/288 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M++ +   P V +  I++    +       L + +R+   G  P++YT++I
Sbjct: 539 NEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 597

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +IN  C  GRV     +L  +     +P+  T+  L+K                      
Sbjct: 598 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 657

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKEL--------------------------------- 142
           C+P++  Y+ ++ G         A+ L                                 
Sbjct: 658 CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDH 717

Query: 143 FLKMKDKNVKPNVVT---YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            LK++D+  K  V T   Y  ++ G C      EA +L  +M+  G+ P+    ++I + 
Sbjct: 718 ALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII-EH 776

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            CK  K D     + L++ +   P   +Y  ++ G    GRV  A++L
Sbjct: 777 YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKL 824


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 21/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F+ M +     P   +++I++  L +    +    L + +   G  P   T+++L
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I   C +G       +L  +      P+V T+T LI ++C+                   
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  IT+N +I+G CK+G+V  A +L   M+  N KPN+ TY  ++ G C  +   +A  
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 426

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L   ++D G+ P+ VT+N+++D  CK G+++ A ++ + M   G+ PD FT+  L+DG C
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR+  A  +  SM   G
Sbjct: 487 KLGRLEQANGILGSMVKKG 505



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++    K    +   ++F  +NS GL PD +T + LI+  CK+GR+     +
Sbjct: 438 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 497

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           LG +++   + D VTFT+LI                       C   A T+N  +D L K
Sbjct: 498 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 557

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              +++A  +  KM    + P+VVT+T +I G C A +   + ++   M   G  PNV T
Sbjct: 558 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYT 617

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +I++ LC NG+++EA ++L  M   GV P+ FTY  L+      GR++ A ++  +M 
Sbjct: 618 YTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 677

Query: 253 SMGC 256
             GC
Sbjct: 678 KNGC 681



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           ++ +L CLAK         +++R+ + G       +  ++N  CK G V    +   ++L
Sbjct: 162 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 221

Query: 99  RSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDGLCKQGFV 136
           R  F  D    TSL+                      + C+P+++TY+ +I GLC+ G +
Sbjct: 222 RLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRL 281

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +L  +M +K  +P+  TYT +I+  C     ++A ++  EM  +   PNV T+ ++
Sbjct: 282 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 341

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D LC+ GK++EA+ +   M++HG+ P   T+N L++G+C  G V  A +L   ME   C
Sbjct: 342 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 401



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++         D  + +   + +    P+++T++ILI+  C+ G++     V
Sbjct: 298 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 357

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
             ++L+    P ++TF +LI                       CKP+  TYN +++GLC+
Sbjct: 358 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 417

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                KA  L  ++ D  + P+ VTY  ++ GFC     N A  +F  M   G++P+  T
Sbjct: 418 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++D LCK G++++A+ +L  M++ G+  D  T+  L+DG C  G+      LF +M 
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537

Query: 253 SMGC 256
              C
Sbjct: 538 ENRC 541



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +         +T +  ++   K  +++    +LG++++    P VVT T LI    
Sbjct: 532 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI---- 587

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                     +G C+ G    + ++  +MK     PNV TYT +I G C      EA+ +
Sbjct: 588 ----------EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 637

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M   GV PN  T+ V++    K G++D A  ++  M+++G +P++  Y+ LL GF L
Sbjct: 638 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVL 697

Query: 238 TGRVNHAKEL 247
           +     A+ L
Sbjct: 698 SNTAIGARAL 707



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 34/238 (14%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN  L  L K+   +   ++  ++   GL P + TH+ILI   C+ G  +    +L R+
Sbjct: 547 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 606

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            ++               C P+  TY  II+GLC  G V++A+ +   M    V PN  T
Sbjct: 607 KQAG--------------CSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 652

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD------------ELCKNGK 205
           Y  +++    A   + A ++   M+  G QPN   ++ ++              L   G 
Sbjct: 653 YAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGD 712

Query: 206 MDEAS--------SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D  S        + L   I+    P    YN L+ G C  GR+  A +L   M   G
Sbjct: 713 LDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHG 770



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 45/273 (16%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEA  +   M++ +   P V +  I++    +       L + +R+   G  P++YT++I
Sbjct: 562 NEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 620

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +IN  C  GRV     +L  +     +P+  T+  L+K                      
Sbjct: 621 IINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 680

Query: 116 CKPDAITYNTIIDG------------LCKQGFVDKAKELFLKMKDKNVKPNVVT------ 157
           C+P++  Y+ ++ G            L   G +D A+ L  +  D N   N +       
Sbjct: 681 CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLD-ARSLSSEENDNNCLSNEIKKCGVPT 739

Query: 158 ---YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
              Y  ++ G C      EA +L  +M+  G+ P+    ++I +  CK  K D     + 
Sbjct: 740 EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMK 798

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           L++ +   P   +Y  ++ G    GRV  A++L
Sbjct: 799 LVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKL 831


>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 138/271 (50%), Gaps = 27/271 (9%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHY-DTVLSLFKRLNST 65
           GE ++    P++AL  F  ML+ H  P P    N +L  L  +++Y      LFK  +  
Sbjct: 93  GEANL----PDQALKTFHSMLQFHSKPLP-KHLNXLLQLLVSHRNYIRPAFDLFKSAHRY 147

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           G+ PD  +++IL++ FC  G +S  + +  ++ +    PDV ++  L++ +C+       
Sbjct: 148 GVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRA 207

Query: 118 -------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        PDA++Y T+++ LC++  + +A +L  +MK K   P++V Y +VI G
Sbjct: 208 VDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILG 267

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           FC      +A ++  +M   G  PN++++  ++  LC  G  DEA + ++ M+  G  P 
Sbjct: 268 FCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPH 327

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              ++ L++GFC  G++  A E+   M   G
Sbjct: 328 FSVFHALINGFCNVGKLEEACEVLXEMLRHG 358



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 21/236 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI++     N       +LF ++    + PD+ ++ IL+   C+  +V+    +
Sbjct: 151 PDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDL 210

Query: 94  LGRILRSCFTPDVVTFTSL---------------------IKVCKPDAITYNTIIDGLCK 132
           L  +L   + PD +++T+L                     +K C PD + YNT+I G C+
Sbjct: 211 LEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCR 270

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G    A ++   M      PN+++Y +++ G C    ++EAK    EM+ +G  P+   
Sbjct: 271 EGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPHFSV 330

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           F+ +++  C  GK++EA  +L  M++HG      T+  ++   C   ++   + +F
Sbjct: 331 FHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENIF 386



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 22/227 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +F+ M +   +P  V S+ I++  L +    +  + L + + + G  PD  +++ L+
Sbjct: 172 AYTLFNQMFKRDVAPD-VESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLL 230

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KV--------CK 117
           N  C+  ++   + +L R+      PD+V + ++I             KV        C 
Sbjct: 231 NSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCS 290

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ ++Y T++ GLC QG  D+AK    +M  K   P+   + ++I GFC      EA  +
Sbjct: 291 PNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEV 350

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
             EM+  G   +  T+  I+  +C+  K+    ++ D  ++  + P+
Sbjct: 351 LXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENIFDEXLKLEITPN 397



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 25/226 (11%)

Query: 37  SSFNIMLGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTHSILINCFCKMGRVSHGFVVL 94
           SSF+I++  L   + +  +  L  RL S    + P L++  I I          +G   L
Sbjct: 48  SSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEI----------YGEANL 97

Query: 95  GRILRSCFTPD--VVTFTSLIKV-CKPDAITYNTIIDGLCK-QGFVDKAKELFLKMKDKN 150
                    PD  + TF S+++   KP     N ++  L   + ++  A +LF       
Sbjct: 98  ---------PDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYG 148

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P+  +Y  ++  FC+  D + A  LF +M  + V P+V ++ ++M  LC+  +++ A 
Sbjct: 149 VSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAV 208

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            LL+ M+  G  PDA +Y TLL+  C   ++  A +L   M+  GC
Sbjct: 209 DLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGC 254


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 22/237 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +S  N  +  L K    +  L   +R+  TG+ PD+ T++ LI  +C + R+     +
Sbjct: 264 PNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALEL 323

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
           +  +      PD V++ +++  +CK                     PD +TYNT+I  L 
Sbjct: 324 IAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLS 383

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G  D A     + +DK    + V Y++++  FC     +EAK L I+M  +   P+VV
Sbjct: 384 KHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVV 443

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T+  I+D  C+ G++DEA  +L  M +HG +P+  +Y  LL+G C +G+   A+E+ 
Sbjct: 444 TYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 500



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 14/236 (5%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           C+ + M++     P   ++N ++  L+K+ H D  L+  K     G   D   +S +++ 
Sbjct: 357 CLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHS 416

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK 140
           FC+ GR+     +            V+   S  + C PD +TY  I+DG C+ G +D+AK
Sbjct: 417 FCQKGRMDEAKSL------------VIDMYS--RSCNPDVVTYTAIVDGFCRLGRIDEAK 462

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++  +M     KPN V+YT+++ G C++    EA+ +     +    PN +T+ V+M   
Sbjct: 463 KMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGF 522

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            + GK+ EA  L   M++ G  P     N L+   C   +V  AK+      + GC
Sbjct: 523 RREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGC 578



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 15/224 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP   S+  ++G L K K  + V  L +++   + L PD  T++ LI+   K G      
Sbjct: 333 PPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDAL 392

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
             L       F                D + Y+ I+   C++G +D+AK L + M  ++ 
Sbjct: 393 AFLKEAEDKGF--------------HIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSC 438

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+VVTYT+++ GFC     +EAK++  +M   G +PN V++  +++ LC +GK  EA  
Sbjct: 439 NPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEARE 498

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++++  +H   P+A TY  ++ GF   G+++ A +L   M   G
Sbjct: 499 MINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKG 542



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 22/224 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            L +   +   G+ P+L   +  I    K  ++      L R+  +   PD+VT+ SLI 
Sbjct: 250 ALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIK 309

Query: 114 --------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
                               K C PD ++Y T++  LCK+  +++ K L  KM +D N+ 
Sbjct: 310 GYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLI 369

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           P+ VTY ++I         ++A     E  D+G   + V ++ I+   C+ G+MDEA SL
Sbjct: 370 PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 429

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  M      PD  TY  ++DGFC  GR++ AK++   M   GC
Sbjct: 430 VIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGC 473



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 16/219 (7%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P   ++ +++    +         L + +   G FP     ++LI   C+  +V  
Sbjct: 506 HWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKV-- 563

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
             V   + L  C          L K C  + + + T+I G C+ G ++ A  +   M   
Sbjct: 564 --VEAKKYLEEC----------LNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLS 611

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
           N  P+ VTYT++          +EA  L ++M+ +G+ P  VTF  ++   C+ G++D+ 
Sbjct: 612 NKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDM 671

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            +LLD M++   +P    YN +++  C  G +  A++L 
Sbjct: 672 LNLLDRMVKR--KPFRTIYNHVIEKLCDFGNLEEAEKLL 708



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + Y T++D L K      A+ +   M  + ++ +   +  V+  +  A     A R+   
Sbjct: 197 LVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTL 256

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           M   GV+PN+   N  +  L K  K+++A   L+ M   G++PD  TYN+L+ G+C   R
Sbjct: 257 MQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNR 316

Query: 241 VNHAKELFVSMESMGC 256
           +  A EL   + S GC
Sbjct: 317 IEDALELIAGLPSKGC 332



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  +  ++    + G +  A  +   M+   V+PN+    + I          +A R 
Sbjct: 231 PEA--FGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRF 288

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M   G++P++VT+N ++   C   ++++A  L+  +   G  PD  +Y T++   C 
Sbjct: 289 LERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCK 348

Query: 238 TGRVNHAKELFVSM 251
             ++   K L   M
Sbjct: 349 EKKIEQVKCLMEKM 362


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 23/241 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+++ +F+  +R     P + +  ++L  L K +  DTV  +FK++   G+  +++ +++
Sbjct: 150 NDSIVVFE-QIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNV 208

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
           L++   K G       +L  +      PD+ T+ +LI V CK                  
Sbjct: 209 LVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSG 268

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+ +TYN+ I G  ++G + +A  LF ++KD +V  N VTYT++I G+C  ND +EA 
Sbjct: 269 VAPNIVTYNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTLIDGYCRMNDIDEAL 327

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           RL   M  +G  P VVT+N I+ +LC++G++ EA+ LL  M    + PD  T NTL++ +
Sbjct: 328 RLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAY 387

Query: 236 C 236
           C
Sbjct: 388 C 388



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 20/237 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N+++   +K+   +    L   +   G+FPD++T++ LI+ +CK         V  R+ 
Sbjct: 206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265

Query: 99  RSCFTPDVVTFTSLI----------------KVCKPDA----ITYNTIIDGLCKQGFVDK 138
           RS   P++VT+ S I                +  K D     +TY T+IDG C+   +D+
Sbjct: 266 RSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDIDE 325

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A  L   M+ +   P VVTY S++R  C      EA RL  EM  + ++P+ +T N +++
Sbjct: 326 ALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLIN 385

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK   M  A  +   MI+ G++ D ++Y  L+ GFC    + +AKE   SM   G
Sbjct: 386 AYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKG 442



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 23/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL + D M R   +P  V+ +N  +   ++         LF+ +    +  +  T++ L
Sbjct: 256 EALSVQDRMERSGVAPNIVT-YNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTL 313

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
           I+ +C+M  +     +   +    F+P VVT+ S++ K+C+                   
Sbjct: 314 IDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKI 373

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD IT NT+I+  CK   +  A ++  KM +  +K ++ +Y ++I GFC   +   AK 
Sbjct: 374 EPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKE 433

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
               M+++G  P   T++ ++D      K DE + LL+   + G+  D   Y  L+   C
Sbjct: 434 ELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRIC 493

Query: 237 LTGRVNHAKELFVSMESMG 255
              +V++AK LF SME  G
Sbjct: 494 KLEQVDYAKVLFESMEKKG 512



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 32/251 (12%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF------- 68
           P+ +   F +   +  S   + S   M+  L K+KH+ T   L  +L    L        
Sbjct: 60  PSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119

Query: 69  ---------PDLYTH--SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
                    P+  +H  S L+  + K G ++   VV  +I RSC               K
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQI-RSCG-------------LK 165

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P       +++ L KQ   D   ++F KM    V  N+  Y  ++     + D  +A++L
Sbjct: 166 PHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKL 225

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             EM ++GV P++ T+N ++   CK     EA S+ D M + GV P+  TYN+ + GF  
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSR 285

Query: 238 TGRVNHAKELF 248
            GR+  A  LF
Sbjct: 286 EGRMREATRLF 296



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 21/217 (9%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
           D  L L + + S G  P + T++ ++   C+ GR+     +L  +      PD +T  +L
Sbjct: 324 DEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL 383

Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           I                        K D  +Y  +I G CK   ++ AKE    M +K  
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGF 443

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P   TY+ ++ GF   N  +E  +L  E   +G+  +V  +  ++  +CK  ++D A  
Sbjct: 444 SPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKV 503

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           L + M + G+  D+  + T+   +  TG+V  A  LF
Sbjct: 504 LFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALF 540



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V ++N +L  L ++        L   ++   + PD  T + LIN +CK+  +     
Sbjct: 339 SPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVK 398

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           V  +++ S    D+ ++ +LI   CK                    P   TY+ ++DG  
Sbjct: 399 VKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFY 458

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            Q   D+  +L  + + + +  +V  Y  +IR  C     + AK LF  M  +G+  + V
Sbjct: 459 NQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSV 518

Query: 192 TFNVIMDELCKNGKMDEASSLLDLM 216
            F  +     + GK+ EAS+L D+M
Sbjct: 519 IFTTMAYAYWRTGKVTEASALFDVM 543


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 22/243 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           VS  N ++  L +      V  L   +   G+ P++ ++S +I+    +G V     VLG
Sbjct: 247 VSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLG 306

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
           +++R    P+V TF+SL+K                       +P+ + YNT+++GLC  G
Sbjct: 307 KMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSG 366

Query: 135 FVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            + +A ++  +M KD   +PNV TY++++ GF  A D   A  ++ +M++ GV+PNVV +
Sbjct: 367 NLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVY 426

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             ++D LCKN   D+A  L+D M   G  P   T+NT + G C  GRV  A  +   M+ 
Sbjct: 427 TSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQR 486

Query: 254 MGC 256
            GC
Sbjct: 487 YGC 489



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +   M+R     P V +F+ ++            + L++ +   G+ P++  ++ L+
Sbjct: 301 ALAVLGKMIR-RGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLL 359

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  C  G ++    V GR+ + CF             C+P+  TY+T++ G  K G +  
Sbjct: 360 NGLCCSGNLAEAVDVCGRMEKDCF-------------CRPNVTTYSTLVHGFVKAGDLQG 406

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ KM +  V+PNVV YTS++   C  + +++A RL   M   G  P VVTFN  + 
Sbjct: 407 ASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIK 466

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
            LC  G++  A  ++D M ++G  PD  TYN LLDG      +  A EL   +E 
Sbjct: 467 GLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEE 521



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 21/201 (10%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           P++ T+S L++ F K G +     V  +++     P+VV +TS++ V             
Sbjct: 386 PNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRL 445

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C P  +T+NT I GLC  G V  A  +  +M+     P+  TY  ++ G   
Sbjct: 446 IDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFS 505

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
            N+  EA  L  E+ ++ V+ N+VT+N +M     +GK +    +L  M+ +GV+PDA T
Sbjct: 506 VNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAIT 565

Query: 228 YNTLLDGFCLTGRVNHAKELF 248
            N ++  +   G+V  A +  
Sbjct: 566 VNVVIYAYSKLGKVRTAIQFL 586



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 44/266 (16%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL    + +++   P    SF  +L     +   D  L +F R+   G  P +  ++ L
Sbjct: 90  DALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHL 149

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++    +G   + F ++G +  +     +          +P+  TYN ++  LCK G +D
Sbjct: 150 LDAL--LGESGNKFHMIGAVYENMRGEGM----------EPNVFTYNVLLKALCKNGKLD 197

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR--------------------- 176
            A +L ++M  +   P+ V+YT+V+   C      EA+                      
Sbjct: 198 GACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCNALICGL 257

Query: 177 -----------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
                      L  EM+  GV PNVV+++ ++  L   G+++ A ++L  MI+ G RP+ 
Sbjct: 258 CREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNV 317

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSM 251
            T+++L+ G+ L GRV     L+  M
Sbjct: 318 HTFSSLMKGYFLGGRVGEGVGLWRVM 343



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 50/238 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +  M+  L KN  +D    L   + + G  P + T +  I   C  GRV     V
Sbjct: 421 PNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRV 480

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++ R                C PD  TYN ++DGL     + +A EL  +++++ V+ 
Sbjct: 481 VDQMQRYG--------------CLPDTRTYNELLDGLFSVNELKEACELIRELEERKVEL 526

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-------- 205
           N+VTY +V+ GF          ++   M+  GV+P+ +T NV++    K GK        
Sbjct: 527 NLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFL 586

Query: 206 ----------------------------MDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                                       ++EA   L+ M+  G+ P+  T++ L+ GF
Sbjct: 587 DRITAGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGF 644



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K   +TY+ +I+ L +   +D    +  +MK + +  +  ++  V+  +  +   + A +
Sbjct: 70  KHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALK 129

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELC--KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           +F  + + G +P V  +N ++D L      K     ++ + M   G+ P+ FTYN LL  
Sbjct: 130 MFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKA 189

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G+++ A +L V M   GC
Sbjct: 190 LCKNGKLDGACKLLVEMSKRGC 211



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ + D M R +   P   ++N +L  L           L + L    +  +L T++ ++
Sbjct: 477 AMRVVDQMQR-YGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVM 535

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             F   G+      VLGR+L              +   KPDAIT N +I    K G V  
Sbjct: 536 YGFSSHGKEEWVLQVLGRML--------------VNGVKPDAITVNVVIYAYSKLGKVRT 581

Query: 139 AKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           A +   ++   K + P+++ +TS++ G C +    EA     +M+++G+ PN+ T++V++
Sbjct: 582 AIQFLDRITAGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLV 641

Query: 198 DELCKN-GKMDEASSLLDLM 216
               K  G M     L D++
Sbjct: 642 RGFFKKLGHMGPIRILDDIL 661


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 105/186 (56%), Gaps = 14/186 (7%)

Query: 71  LYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           L T++ILI      G V     +L  ++ S   PD+  F              N ++ G+
Sbjct: 25  LVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIF--------------NAVVGGM 70

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C++G VD+A E    +  K   P+V++Y+ ++RG      W + ++L  +M+ +G +PNV
Sbjct: 71  CREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNV 130

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VT+++++  LC++GK++EA SLL +M + G+ PDA++Y+ L+  FC   RV+ A E   S
Sbjct: 131 VTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLES 190

Query: 251 MESMGC 256
           M S GC
Sbjct: 191 MISDGC 196



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 21/245 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
             +P  + ++ I++         D V+ L   +  +GL PD++  + ++   C+ G V  
Sbjct: 19  QTNPISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDR 78

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIID 128
            F  +  I    + PDV++++ L+                     K C+P+ +TY+ +I 
Sbjct: 79  AFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILIS 138

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LC+ G V++A  L   MK++ + P+  +Y  +I  FC  +  + A      M+  G  P
Sbjct: 139 SLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLP 198

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++V +N I+  LCKNGK DEA  + + + + G  P+  +YNTL      +G    A  + 
Sbjct: 199 DIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMI 258

Query: 249 VSMES 253
           + M S
Sbjct: 259 LEMLS 263



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 21/234 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I+L  L   + ++    L   + S G  P++ T+SILI+  C+ G+V     +
Sbjct: 93  PDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSL 152

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           L  +     TPD  ++  LI                       C PD + YNTI+  LCK
Sbjct: 153 LKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCK 212

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A ++F K+ +    PNV +Y ++      +     A  + +EM+ + + P+ +T
Sbjct: 213 NGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEIT 272

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +N ++  LC++  +D+A  LL  M     +P   +YN +L G     R++ A E
Sbjct: 273 YNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKVHRISDAIE 326



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL IF+ +  +   PP VSS+N +   L  + H    L +   + S  + PD  T++ 
Sbjct: 217 DEALKIFEKLGEVG-CPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNS 275

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+C C+   V     +L  +  S + P V              I+YN ++ GL K   +
Sbjct: 276 LISCLCRDAMVDQAIELLVDMESSVYQPSV--------------ISYNIVLLGLSKVHRI 321

Query: 137 DKAKE 141
             A E
Sbjct: 322 SDAIE 326


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N +L  LAK K       L++ +   G+  + YT +IL    C+ G V+     
Sbjct: 219 PNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGF 278

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++    F PDVVT              YNT+ID   ++G ++ A  L+  M  + V P
Sbjct: 279 LEKMEEEGFDPDVVT--------------YNTLIDSYVRRGRLEDAFYLYKIMYRRGVMP 324

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++V+YTS++RG C      EA +LF  M+D+G+ P+VV +N ++   CK+G + EA SLL
Sbjct: 325 DLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLL 384

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI  G+ PD+FT   L++G+   GR+  A  L V ++ +G
Sbjct: 385 HEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLG 426



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 112/235 (47%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI+   L ++   + +    +++   G  PD+ T++ LI+ + + GR+   F +   +
Sbjct: 258 TFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIM 317

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
            R    PD+V++TSL++ +C+                    PD + YNT+I   CK G +
Sbjct: 318 YRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGML 377

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+ L  +M    + P+  T   ++ G+        A  L +E+   GV      +  +
Sbjct: 378 QEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYL 437

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LC+  +   A SLL+ +++   +PD+  YN L++ FC +  V+ A  L + M
Sbjct: 438 IISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEM 492



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 56/273 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    +    +    L+K +   G+ PDL +++ L+   C++GRV     +
Sbjct: 289 PDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQL 348

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAIT---------- 122
             R++     PDVV + +LI   CK                    PD+ T          
Sbjct: 349 FHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGR 408

Query: 123 -------------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                    Y  +I  LC++     AK L  ++ + + +P+   
Sbjct: 409 EGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDI 468

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I  FC +N+ +EA  L +EM+++  +P   T+  ++  +C+  +  +   L+  M+
Sbjct: 469 YNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMV 528

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +  V PD      L++G+C  G  + A+ L VS
Sbjct: 529 ESEVIPDHEICRALVNGYCKEGNADKAESLLVS 561



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  + + +  +I    K   + ++   F KM      PNV+    ++ G        +  
Sbjct: 182 CNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCW 241

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ EM   GV  N  TFN++   LC++G +++ +  L+ M + G  PD  TYNTL+D +
Sbjct: 242 ELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSY 301

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR+  A  L+  M   G
Sbjct: 302 VRRGRLEDAFYLYKIMYRRG 321


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + N +L  LAK K       L++ +   G+  + YT +IL    C+ G V+     
Sbjct: 223 PNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGF 282

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++    F PDVVT              YNT+ID   ++G ++ A  L+  M  + V P
Sbjct: 283 LEKMEEEGFDPDVVT--------------YNTLIDSYVRRGRLEDAFYLYKIMYRRGVMP 328

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++V+YTS++RG C      EA +LF  M+D+G+ P+VV +N ++   CK+G + EA SLL
Sbjct: 329 DLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLL 388

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI  G+ PD+FT   L++G+   GR+  A  L V ++ +G
Sbjct: 389 HEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLG 430



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 112/235 (47%), Gaps = 21/235 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI+   L ++   + +    +++   G  PD+ T++ LI+ + + GR+   F +   +
Sbjct: 262 TFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIM 321

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
            R    PD+V++TSL++ +C+                    PD + YNT+I   CK G +
Sbjct: 322 YRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGML 381

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+ L  +M    + P+  T   ++ G+        A  L +E+   GV      +  +
Sbjct: 382 QEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYL 441

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +  LC+  +   A SLL+ +++   +PD+  YN L++ FC +  V+ A  L + M
Sbjct: 442 IISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEM 496



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 56/273 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N ++    +    +    L+K +   G+ PDL +++ L+   C++GRV     +
Sbjct: 293 PDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQL 352

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAIT---------- 122
             R++     PDVV + +LI   CK                    PD+ T          
Sbjct: 353 FHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGR 412

Query: 123 -------------------------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                                    Y  +I  LC++     AK L  ++ + + +P+   
Sbjct: 413 EGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDI 472

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I  FC +N+ +EA  L +EM+++  +P   T+  ++  +C+  +  +   L+  M+
Sbjct: 473 YNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMV 532

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +  V PD      L++G+C  G  + A+ L VS
Sbjct: 533 ESEVIPDHEICRALVNGYCKEGNADKAESLLVS 565



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV--SHGF 91
           P V  +N ++G   K+       SL   +   G+ PD +T  IL+  + + GR+  +   
Sbjct: 363 PDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNL 422

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCK--------------------PDAITYNTIIDGLC 131
           VV  + L      D+  +  +I +C+                    PD+  YN +I+  C
Sbjct: 423 VVEIQKLGVTVAHDIYKYL-IISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFC 481

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           +   V +A  L L+M ++N KP   TY S+I   C  N   + + L +EM++  V P+  
Sbjct: 482 RSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHE 541

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
               +++  CK G  D+A SLL    Q     D+ ++N+L+  +   G      EL   M
Sbjct: 542 ICRALVNGYCKEGNADKAESLLVSFAQDFQFFDSESFNSLVKVYRDVGNETKLMELQDRM 601

Query: 252 ESMG 255
              G
Sbjct: 602 LKAG 605



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  + + +  +I    K   + ++   F KM      PNV+    ++ G        +  
Sbjct: 186 CNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCW 245

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L+ EM   GV  N  TFN++   LC++G +++ +  L+ M + G  PD  TYNTL+D +
Sbjct: 246 ELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSY 305

Query: 236 CLTGRVNHAKELFVSMESMG 255
              GR+  A  L+  M   G
Sbjct: 306 VRRGRLEDAFYLYKIMYRRG 325


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I+   L +     T+LSLF      G+    YT SIL+N  CK G+V+    V
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  ++ +   P    + +LI                     +  +PD ITYN +I+GLCK
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK 417

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              + +A++L ++M+   V P+V T+ ++I  +  A    +   +  +M D+G++ NV++
Sbjct: 418 MEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVIS 477

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           F  ++   CKNGK+ EA ++LD MI   V P+A  YN+++D +  +G    A  L   M+
Sbjct: 478 FGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMK 537

Query: 253 SMG 255
           S G
Sbjct: 538 SSG 540



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 12/215 (5%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +SS N++L  L     +  V + F  L + G  PD +  +  +      G +     +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+ RS   P             PDA +YN +I GL + G    A ++F +M D+ V P
Sbjct: 181 LRRMGRSEGAP------------PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAP 228

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY ++I G     D     RL  +M+  G +PNVVT+NV++  LC+ G+MDE  +L+
Sbjct: 229 NQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALM 288

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           D M  + + PD FTY+ L DG   TG       LF
Sbjct: 289 DEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLF 323



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  IF+ M   H  P  ++ +N ++  L K +       L   +  +G+ P + T + LI
Sbjct: 389 AFSIFEQMKSRHIRPDHIT-YNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLI 447

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + + + G++   F VL  +       +V++F S++K  CK                    
Sbjct: 448 DAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVV 507

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN+IID   + G  ++A  L  KMK   V  ++ TY  +++G C  +  +EA+ L
Sbjct: 508 PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEEL 567

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +QG++P+VV++N I+   C  G  D A  LL  M ++ +RP   TY+ LL     
Sbjct: 568 IYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGS 627

Query: 238 TGRVNHAKELFVSM 251
            GRV+  + L+  M
Sbjct: 628 AGRVHDMECLYQHM 641



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           +EAL +   M R   +PPP + S+N+++  L ++      L +F  +   G+ P+  T++
Sbjct: 175 DEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYN 234

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +I+   K G +  GF +  ++L+    P+VVT              YN ++ GLC+ G 
Sbjct: 235 TMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVT--------------YNVLLSGLCRAGR 280

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D+ + L  +M   ++ P+  TY+ +  G     D      LF E + +GV     T ++
Sbjct: 281 MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSI 340

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +++ LCK+GK+ +A  +L++++  G+ P    YNTL++G+C    +  A  +F  M+S
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKS 398



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 23/230 (10%)

Query: 24  DYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D ++ M  S   P V +FN ++    +    +   ++   +   G+  ++ +   ++  F
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK G++     +L  ++     P+   + S+I                            
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYN ++ GLCK   +D+A+EL   + ++ ++P+VV+Y ++I   C   D + A  L  E
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQE 605

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
           M    ++P + T++ ++  L   G++ +   L   M+   V P +  Y T
Sbjct: 606 MHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGT 655


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ ML    +  PV   +++       +  D    +FK L   G  PDL   + 
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNT 533

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKP-------------- 118
            ++C  K G V  G ++   I    F PDV +++ LI    K  +               
Sbjct: 534 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 593

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              DA  YN ++DG CK G V KA E+  +MK+K V+P V TY +++ G    +  +EA 
Sbjct: 594 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY 653

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF E   +G++ NVV ++ ++D   K G++DEA  +L+ M++ G+ P+ +T+N+LLD  
Sbjct: 654 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 713

Query: 236 CLTGRVNHAKELFVSMESMGC 256
                +N A   F SM+ M C
Sbjct: 714 VKAEEINEALVCFQSMKEMKC 734



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V SFN +L CL K +  D  LSLF+ +      P+  T++I+I+  C  GR
Sbjct: 345 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGR 403

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +L  +  +   P+++T   ++                     + C PD +TY +
Sbjct: 404 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 463

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGL K+G VD+A  LF KM D     N V YTS+IR F       +  ++F E++ +G
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P++   N  MD + K G++++   + + +  +G  PD  +Y+ L+ G    G+     
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583

Query: 246 ELFVSMESMG 255
            +F +M+  G
Sbjct: 584 NIFHAMKQQG 593



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR+   +++
Sbjct: 631 PTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLI 690

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++   TP+V T              +N+++D L K   +++A   F  MK+    P
Sbjct: 691 LEEMMKKGLTPNVYT--------------WNSLLDALVKAEEINEALVCFQSMKEMKCPP 736

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY+ +I G C    +N+A   + +M  QG+ PNVVT+  ++  L K G + +A SL 
Sbjct: 737 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF 796

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +    +G  PDA ++N L++G     R   A ++F      GC
Sbjct: 797 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGC 839



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K        ++F  +   G   D   ++ +++ FCK G+V   + +
Sbjct: 561 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 620

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +   C  P V T              Y  I+DGL K   +D+A  LF + K K ++ 
Sbjct: 621 LEEMKEKCVQPTVAT--------------YGAIVDGLAKIDRLDEAYMLFEEAKSKGIEL 666

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV Y+S+I GF      +EA  +  EMM +G+ PNV T+N ++D L K  +++EA    
Sbjct: 667 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 726

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +    P+ +TY+ L++G C   + N A   +  M+  G
Sbjct: 727 QSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 768



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 50/254 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++ +++G LA+ +  +  L L +++   G    ++  + L+    + G+V+    +
Sbjct: 177 PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALAL 236

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  SC  PD+V               YN  ID   K G VD A + F ++K + +KP
Sbjct: 237 VDEVKGSCLEPDIVL--------------YNVCIDCFGKAGNVDMAWKFFHELKAQGLKP 282

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEM-------------------------------- 181
           + V+YTS+I   C A    EA+ LF +M                                
Sbjct: 283 DDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLL 342

Query: 182 ---MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
               ++G  P+VV+FN I+  L K  K+DEA SL ++M +    P++ TYN ++D  CL 
Sbjct: 343 ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLG 401

Query: 239 GRVNHAKELFVSME 252
           GRV  A  +   ME
Sbjct: 402 GRVEEAYRILDEME 415



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            EA  I D M   H S  P + + NIM+  L K +  +    +F+  +  G  PD  T+ 
Sbjct: 405 EEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYC 462

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
            LI+   K G+V   + +  ++L +    + V +TSLI+                     
Sbjct: 463 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRR 522

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKPD    NT +D + K G V+K + +F  ++     P+V +Y+ +I G   A    E 
Sbjct: 523 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARET 582

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F  M  QG   +   +N ++D  CK+GK+ +A  +L+ M +  V+P   TY  ++DG
Sbjct: 583 SNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDG 642

Query: 235 FCLTGRVNHAKELFVSMESMG 255
                R++ A  LF   +S G
Sbjct: 643 LAKIDRLDEAYMLFEEAKSKG 663



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 20/254 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + L+     P   S+  M+  L K         LF ++ +    P  Y ++ +I  + 
Sbjct: 271 FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 330

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAIT 122
             GR    + +L R+      P VV+F S++                    K  +P++ T
Sbjct: 331 SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 390

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN IID LC  G V++A  +  +M+  ++ PN++T   ++   C A    EA ++F    
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G  P+ VT+  ++D L K G++DEA  L + M+  G   +   Y +L+  F + GR  
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 510

Query: 243 HAKELFVSMESMGC 256
              ++F  +   GC
Sbjct: 511 DGHKIFKELIRRGC 524



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +   L + +  D  +     +      P    +++LI    +  R      +L ++    
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
           +   V  FT+L++               L ++G V  A  L  ++K   ++P++V Y   
Sbjct: 210 YEVGVHLFTTLVR--------------ALAREGQVADALALVDEVKGSCLEPDIVLYNVC 255

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I  F  A + + A + F E+  QG++P+ V++  ++  LCK G++ EA  L   M     
Sbjct: 256 IDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 315

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            P A+ YNT++ G+   GR   A +L   +   GC
Sbjct: 316 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGC 350



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL  F  M  M   PP   +++I++  L + + Y+     ++ +   GL P++ T++ 
Sbjct: 720 NEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 778

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
           +I+   K+G ++  + +  R   +   PD  +F +LI+
Sbjct: 779 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIE 816


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A CIF+ M   H  P  ++ +N ++  L K +       L   +  +G+ P + T + LI
Sbjct: 210 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 268

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + +   G++   F VL  + +     DV++F S++K  CK                    
Sbjct: 269 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 328

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN+IID   + G  ++A  L  KMK+  V  ++VTY  +++G C ++  +EA+ L
Sbjct: 329 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 388

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +QG++P+VV++N I+   C  G  D+A  LL  M ++G+RP   TY+TL+     
Sbjct: 389 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALAS 448

Query: 238 TGRVNHAKELFVSM 251
            GRV+  + L+  M
Sbjct: 449 AGRVHDMECLYQQM 462



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M   H   P   +++I+   L +     T+LSLF      G+    YT SI
Sbjct: 103 DETRVLMDEMAS-HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 161

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+N  CK G+V+    VL  ++ +   P  V + +LI                     + 
Sbjct: 162 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 221

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD ITYN +I+GLCK   V KA++L ++M+   V P+V T+ ++I  +  A    +  
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M  +G++ +V++F  ++   CKNGK+ EA ++LD MI   V P+A  YN+++D +
Sbjct: 282 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G    A  L   M++ G
Sbjct: 342 IESGDTEQAFLLVEKMKNSG 361



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 74/133 (55%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDA +YN +I GL + G    A ++F +M D  V PN +TY ++I G     D     RL
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M+  G +PN+VT+NV++  LC+ G+MDE   L+D M  H + PD FTY+ L DG   
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 238 TGRVNHAKELFVS 250
           TG       LF  
Sbjct: 134 TGESRTMLSLFAE 146



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 118/229 (51%), Gaps = 15/229 (6%)

Query: 26  MLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           M R   +PPP + S+N+++  L ++      L +F  +   G+ P+  T++ +I+   K 
Sbjct: 5   MGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKG 64

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G +  GF +  ++L     P            KP+ +TYN ++ GLC+ G +D+ + L  
Sbjct: 65  GDLEAGFRLRDQMLHD--GP------------KPNIVTYNVLLSGLCRAGRMDETRVLMD 110

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +M   ++ P+  TY+ +  G     +      LF E + +GV     T +++++ LCK+G
Sbjct: 111 EMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDG 170

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           K+ +A  +L++++  G+ P    YNTL++G+C    +  A  +F  M+S
Sbjct: 171 KVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS 219



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 105/235 (44%), Gaps = 23/235 (9%)

Query: 24  DYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D ++ M  S   P V +FN ++         +   ++   +   G+  D+ +   ++  F
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK G++     +L  ++     P+   + S+I                            
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 366

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYN ++ GLC+   +D+A+EL   ++++ ++P+VV+Y ++I   C   D ++A  L  E
Sbjct: 367 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 426

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           M   G++P + T++ ++  L   G++ +   L   M+   V P +  Y  ++D +
Sbjct: 427 MNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 481



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ I D M+      P    +N ++    ++   +    L +++ ++G+   + T+++L
Sbjct: 314 EAVAILDDMI-YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLL 372

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C+  ++                 + + +T   +  +PD ++YNTII   C +G  D
Sbjct: 373 LKGLCRSSQIDEA--------------EELIYTLRNQGLRPDVVSYNTIISACCNKGDTD 418

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL  +M    ++P + TY +++     A   ++ + L+ +M+ + V+P+   + +++
Sbjct: 419 KALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMV 478

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPD 224
           D   +     + +SL   M + G+  D
Sbjct: 479 DAYVRCENDSKVASLKKEMSEKGIAFD 505


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F+ ML    +  PV   +++       +  D    +FK L   G  PDL   + 
Sbjct: 341 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKVFKELIRRGCKPDLTLLNT 399

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKP-------------- 118
            ++C  K G V  G ++   I    F PDV +++ LI    K  +               
Sbjct: 400 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 459

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              DA  YN ++DG CK G V KA E+  +MK+K V+P V TY +++ G    +  +EA 
Sbjct: 460 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY 519

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF E   +G++ NVV ++ ++D   K G++DEA  +L+ M++ G+ P+ +T+N+LLD  
Sbjct: 520 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 579

Query: 236 CLTGRVNHAKELFVSMESMGC 256
                +N A   F SM+ M C
Sbjct: 580 VKAEEINEALVCFQSMKEMKC 600



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR     P V SFN +L CL K +  D  LSLF+ +      P+  T++I+I+  C  GR
Sbjct: 211 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGR 269

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V   + +L  +  +   P+++T   ++                     + C PD +TY +
Sbjct: 270 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 329

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDGL K+G VD+A  LF KM D     N V YTS+IR F       +  ++F E++ +G
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG 389

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P++   N  MD + K G++++   + + +  +G  PD  +Y+ L+ G    G+     
Sbjct: 390 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 449

Query: 246 ELFVSMESMG 255
            +F +M+  G
Sbjct: 450 NIFHAMKQQG 459



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +   P V S++I++  L K        ++F  +   G   D   ++ +++ FCK G+
Sbjct: 420 IRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGK 479

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           V   + +L  +   C  P V T              Y  I+DGL K   +D+A  LF + 
Sbjct: 480 VHKAYEILEEMKEKCVQPTVAT--------------YGAIVDGLAKIDRLDEAYMLFEEA 525

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K K ++ NVV Y+S+I GF      +EA  +  EMM +G+ PNV T+N ++D L K  ++
Sbjct: 526 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 585

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +EA      M +    P+ +TY+ L++G C   + N A   +  M+  G
Sbjct: 586 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG 634



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 15/224 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR+   +++
Sbjct: 497 PTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLI 556

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++   TP+V T              +N+++D L K   +++A   F  MK+    P
Sbjct: 557 LEEMMKKGLTPNVYT--------------WNSLLDALVKAEEINEALVCFQSMKEMKCPP 602

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY+ +I G C    +N+A   + +M  QG+ PNVVT+  ++  L K G + +A SL 
Sbjct: 603 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF 662

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV-SMESMGC 256
           +    +G  PDA ++N L++G     R   A +  V  + S  C
Sbjct: 663 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLSSSSC 706



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 50/254 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++ +++G LA+ +  +  L L +++   G    ++  + L+    + G+V+    +
Sbjct: 43  PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALAL 102

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  SC  PD+V               YN  ID   K G VD A + F ++K + +KP
Sbjct: 103 VDEVKGSCLEPDIVL--------------YNVCIDCFGKAGNVDMACKFFHELKAQGLKP 148

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEM-------------------------------- 181
           + V+YTS+I   C A    EA+ LF +M                                
Sbjct: 149 DDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLL 208

Query: 182 ---MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
               ++G  P+VV+FN I+  L K  K+DEA SL ++M +    P++ TYN ++D  CL 
Sbjct: 209 ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLG 267

Query: 239 GRVNHAKELFVSME 252
           GRV  A  +   ME
Sbjct: 268 GRVEEAYRILDEME 281



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 24/261 (9%)

Query: 17  NEALCIFDYMLRMHPSP-PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
            EA  I D M   H S  P + + NIM+  L K +  +    +F+  +  G  PD  T+ 
Sbjct: 271 EEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYC 328

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------- 114
            LI+   K G+V   + +  ++L +    + V +TSLI+                     
Sbjct: 329 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRR 388

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            CKPD    NT +D + K G V+K + +F  ++     P+V +Y+ +I G   A    E 
Sbjct: 389 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARET 448

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F  M  QG   +   +N ++D  CK+GK+ +A  +L+ M +  V+P   TY  ++DG
Sbjct: 449 SNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDG 508

Query: 235 FCLTGRVNHAKELFVSMESMG 255
                R++ A  LF   +S G
Sbjct: 509 LAKIDRLDEAYMLFEEAKSKG 529



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 20/256 (7%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           C F + L+     P   S+  M+  L K         LF ++ +    P  Y ++ +I  
Sbjct: 135 CKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 194

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDA 120
           +   GR    + +L R+      P VV+F S++                    K  +P++
Sbjct: 195 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS 254

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
            TYN IID LC  G V++A  +  +M+  ++ PN++T   ++   C A    EA ++F  
Sbjct: 255 STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES 314

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
              +G  P+ VT+  ++D L K G++DEA  L + M+  G   +   Y +L+  F + GR
Sbjct: 315 ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR 374

Query: 241 VNHAKELFVSMESMGC 256
                ++F  +   GC
Sbjct: 375 KEDGHKVFKELIRRGC 390



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +   L + +  D  +     +      P    +++LI    +  R      +L ++    
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 75

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
           +   V  FT+L++               L ++G V  A  L  ++K   ++P++V Y   
Sbjct: 76  YEVGVHLFTTLVR--------------ALAREGQVADALALVDEVKGSCLEPDIVLYNVC 121

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I  F  A + + A + F E+  QG++P+ V++  ++  LCK G++ EA  L   M     
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 181

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            P A+ YNT++ G+   GR   A +L   +   GC
Sbjct: 182 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGC 216



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL  F  M  M   PP   +++I++  L + + Y+     ++ +   GL P++ T++ 
Sbjct: 586 NEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 644

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
           +I+   K+G ++  + +  R   +   PD  +F +LI+
Sbjct: 645 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIE 682


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 27/258 (10%)

Query: 25  YMLRM--HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           ++LR+  H + P   S+  ++  L   +     + L + + ++G+ PD+ T+  LI   C
Sbjct: 100 FLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLC 159

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAI 121
               V     +L  +  S   P+VV ++ L++  CK                    PD +
Sbjct: 160 DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVV 219

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
            Y  +ID LC++G V KA ++  KM ++ ++PNVVTY  +I   C      EA  L   M
Sbjct: 220 MYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNM 279

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG---VRPDAFTYNTLLDGFCLT 238
           +++GV  + VT+N ++  L    +MDEA  LL+ MI HG   V P+  T+N+++ G C T
Sbjct: 280 LEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMI-HGETMVEPNVVTFNSVIHGLCKT 338

Query: 239 GRVNHAKELFVSMESMGC 256
           GR+  A ++   M   GC
Sbjct: 339 GRMRQAFQVRDMMAENGC 356



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 113/215 (52%), Gaps = 21/215 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------ 115
           L+S     D  +++ ++   C+ G      + L R++     P  V++T+L++       
Sbjct: 69  LSSLPSVRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERR 128

Query: 116 ---------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTS 160
                           +PD +TY T+I GLC    VDKA EL  +M +  ++PNVV Y+ 
Sbjct: 129 TGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSC 188

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           +++G+C A  W    ++F EM  +G++P+VV +  ++D LC+ GK+ +A+ ++D M++ G
Sbjct: 189 LLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERG 248

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + P+  TYN L++  C  G V  A  L  +M   G
Sbjct: 249 LEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG 283



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 127/245 (51%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  ++ +L    K   ++ V  +F+ ++  G+ PD+  ++ LI+  C+ G+V     V
Sbjct: 181 PNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCKP--------------------DAITYNTIIDGLCK 132
           + +++     P+VVT+  LI  +CK                     DA+TYNT+I GL  
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 133 QGFVDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
              +D+A  L  +M   +  V+PNVVT+ SVI G C      +A ++   M + G   N+
Sbjct: 301 VLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNL 360

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           VTFN+++  L +  K+ +A  L+D M   G+ PD+FTY+ L++GFC   +V+ A+ L   
Sbjct: 361 VTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSK 420

Query: 251 MESMG 255
           M   G
Sbjct: 421 MRRDG 425



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 15/216 (6%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FN+++G L +       + L   + S+GL PD +T+SILIN FCKM +V     +L ++
Sbjct: 362 TFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKM 421

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            R    P++V +  L+                LC+QG +++A+  F +M  KN K +VV 
Sbjct: 422 RRDGIEPELVHYIPLLA--------------ALCEQGMMEQARNFFDEMH-KNCKLDVVA 466

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+++I G C   D   A+     M+D+G+ P+ VT++++++    +G +  A  +L  M 
Sbjct: 467 YSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMT 526

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             G  PD   +++L+ G+   G      EL   M +
Sbjct: 527 ASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTA 562



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V  +  ++  L +         +  ++   GL P++ T+++LIN  CK G V     +
Sbjct: 216 PDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSL 275

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYNTIIDGL 130
              +L      D VT+ +LI                        + +P+ +T+N++I GL
Sbjct: 276 RNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGL 335

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G + +A ++   M +     N+VT+  +I G    +   +A  L  EM   G++P+ 
Sbjct: 336 CKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDS 395

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T++++++  CK  ++D A SLL  M + G+ P+   Y  LL   C  G +  A+  F  
Sbjct: 396 FTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDE 455

Query: 251 M 251
           M
Sbjct: 456 M 456



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 122/262 (46%), Gaps = 25/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTH 74
            EA+ + + ML    +   V+ +N ++  L+     D  + L + +    T + P++ T 
Sbjct: 270 KEAMSLRNNMLEKGVALDAVT-YNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTF 328

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---------- 117
           + +I+  CK GR+   F V   +  +    ++VTF  LI       KV K          
Sbjct: 329 NSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMAS 388

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD+ TY+ +I+G CK   VD+A+ L  KM+   ++P +V Y  ++   C      +
Sbjct: 389 SGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQ 448

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A+  F EM  +  + +VV ++ ++   C+      A   L  M+  G+ PD+ TY+ L++
Sbjct: 449 ARNFFDEM-HKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLIN 507

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
            F  +G +  A+ +   M + G
Sbjct: 508 MFANSGDLGAAERVLKQMTASG 529



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 18/218 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +++I++    K    D   SL  ++   G+ P+L  +  L+   C+ G +      
Sbjct: 393 PDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNF 452

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                          F  + K CK D + Y+T+I G C+      A+E    M D+ + P
Sbjct: 453 ---------------FDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIP 497

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY+ +I  F  + D   A+R+  +M   G  P+V  F+ ++      G  ++   L+
Sbjct: 498 DSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELI 557

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             M    +  D+   +T+    CL    N  K L  S+
Sbjct: 558 REMTAKDIALDSKIISTIYT--CLVAN-NEGKALLQSV 592


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 25/248 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F I++    K    D  L L   + S G+ P+   ++ +++ FC+ GR      +
Sbjct: 180 PNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKM 239

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK------------------------PDAITYNTIID 128
           + ++      PD+VTF S I  +CK                        P++ITYN ++ 
Sbjct: 240 VEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLK 299

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK G ++ AK LF  +++ +   ++ +Y   ++G      + EA+ +  +M D+G+ P
Sbjct: 300 GFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGP 359

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           ++ ++N++MD LCK G + +A +++ LM ++GV PDA TY  LL G+C  G+V+ AK L 
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLL 419

Query: 249 VSMESMGC 256
             M    C
Sbjct: 420 QEMMRNNC 427



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 20/229 (8%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R   + P V  +N++L    K +  + V  L+K +   G+ P  YT ++LI   C     
Sbjct: 104 RFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCD---- 159

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                       SC       F  +  K CKP+  T+  ++ G CK G  DK  EL   M
Sbjct: 160 -----------SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAM 208

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           +   V PN V Y +++  FC     ++++++  +M ++G+ P++VTFN  +  LCK GK+
Sbjct: 209 ESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKV 268

Query: 207 DEASSLL-DLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +AS +  D+ +   +   RP++ TYN +L GFC  G +  AK LF S+
Sbjct: 269 LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESI 317



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 132/274 (48%), Gaps = 44/274 (16%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R +     + S+NI L  L ++  +    ++ K++   G+ P +Y+++IL++  CK+G 
Sbjct: 317 IRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGM 376

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI-------KV--------------CKPDAITYNT 125
           +S    ++G + R+   PD VT+  L+       KV              C P+A T N 
Sbjct: 377 LSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNI 436

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL-------- 177
           ++  L K G + +A+EL  KM +K    + VT   ++ G C + + ++A  +        
Sbjct: 437 LLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496

Query: 178 ----------FIEMMDQGV-----QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
                     +I ++D  +      P+++T++ +++ LCK G+  EA +L   M+   ++
Sbjct: 497 SAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQ 556

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           PD+  YN  +  FC  G+++ A  +   ME  GC
Sbjct: 557 PDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 44/265 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS----- 88
           P   + NI+L  L K         L +++N  G   D  T +I+++  C  G +      
Sbjct: 429 PNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEI 488

Query: 89  ------HGFVVLGRILRSCFT------------PDVVTFTSLIK-VCK------------ 117
                 HG   LG +  S               PD++T+++L+  +CK            
Sbjct: 489 VKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFA 548

Query: 118 --------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                   PD++ YN  I   CKQG +  A  +   M+ K    ++ TY S+I G    N
Sbjct: 549 EMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKN 608

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
              E   L  EM ++G+ PN+ T+N  +  LC+  K+++A++LLD M+Q  + P+ F++ 
Sbjct: 609 QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668

Query: 230 TLLDGFCLTGRVNHAKELFVSMESM 254
            L++ FC     + A+E+F +  S+
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSI 693



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 24/223 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           +SS   ++   AK+ H D     F+ + S   FP+      L N                
Sbjct: 75  LSSLLSVVSIFAKSNHIDKAFPQFQLVRSR--FPENKPSVYLYNL--------------- 117

Query: 96  RILRSCFTPDVVTFTSLIK----VC--KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
            +L SC     V F S +     +C   P   T+N +I  LC    VD A+ELF +M +K
Sbjct: 118 -LLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEK 176

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
             KPN  T+  ++RG+C A   ++   L   M   GV PN V +N I+   C+ G+ D++
Sbjct: 177 GCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDS 236

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             +++ M + G+ PD  T+N+ +   C  G+V  A  +F  ME
Sbjct: 237 EKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 15/225 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P P  ++ +N+ML    K    +   +LF+ +        L +++I +    + G+    
Sbjct: 287 PRPNSIT-YNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEA 345

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             VL ++      P + +              YN ++DGLCK G +  AK +   MK   
Sbjct: 346 ETVLKQMTDKGIGPSIYS--------------YNILMDGLCKLGMLSDAKTIVGLMKRNG 391

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P+ VTY  ++ G+C     + AK L  EMM     PN  T N+++  L K G++ EA 
Sbjct: 392 VCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAE 451

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LL  M + G   D  T N ++DG C +G ++ A E+   M   G
Sbjct: 452 ELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 55/277 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++ +L  L K   +    +LF  +    L PD   ++I I+ FCK G++S  F V
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +      + T+ SLI                     K   P+  TYNT I  LC+
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI------------- 179
              V+ A  L  +M  KN+ PNV ++  +I  FC   D++ A+ +F              
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLY 701

Query: 180 ---------------------EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
                                 ++D+G +     +  +++ LCK  +++ AS +L  MI 
Sbjct: 702 SLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMID 761

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G   D      ++DG    G    A      M  M 
Sbjct: 762 RGYGFDPAALMPVIDGLGKMGNKKEANSFADKMMEMA 798



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           KP    YN +++   K+  V+    L+  M    + P   T+  +IR  C ++  + A+ 
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF EM ++G +PN  TF +++   CK G  D+   LL+ M   GV P+   YNT++  FC
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228

Query: 237 LTGRVNHAKELFVSMESMG 255
             GR + ++++   M   G
Sbjct: 229 REGRNDDSEKMVEKMREEG 247



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           +P+V  +N++++   K  +++  S L   M+  G+ P  +T+N L+   C +  V+ A+E
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 247 LFVSMESMGC 256
           LF  M   GC
Sbjct: 169 LFDEMPEKGC 178


>gi|115445813|ref|NP_001046686.1| Os02g0321000 [Oryza sativa Japonica Group]
 gi|113536217|dbj|BAF08600.1| Os02g0321000 [Oryza sativa Japonica Group]
          Length = 542

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  FD ML      P  SS NI++   A+   +D    L   ++ +G+ PD+ T+S L
Sbjct: 116 EALKAFDEML-ASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTL 171

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   C+ G++   + VL  +L               K C+P   TY  I+   C+ G + 
Sbjct: 172 IAGLCRAGKIVEAWGVLDWMLE--------------KNCRPMVQTYTPIVQAYCRDGRIV 217

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AK L  +M+     PNVVTY  +IR  C  + ++E +++ +E   +  +P+ VT+N+ M
Sbjct: 218 EAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYM 277

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + LCK GK  EA  LLD+M+  G+ P A+T++ LL+  C + R+
Sbjct: 278 NGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRL 321



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 25/242 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTHSILINCFCKMGRVSHGF 91
           +N+ +  LA     D V+++F  L  T       G  P++  ++ L+N   + GR     
Sbjct: 59  YNVAMKALALAGDLDEVVAVFAELKRTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 118

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV------------------CKPDAITYNTIIDGLCKQ 133
                +L S   P+  +   LIK+                   +PD  TY+T+I GLC+ 
Sbjct: 119 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIAGLCRA 178

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  +   M +KN +P V TYT +++ +C      EAK L  EM   G  PNVVT+
Sbjct: 179 GKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLPNVVTY 238

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           NV++  LC + K DE   +L        +P   TYN  ++G C  G+   A EL   M  
Sbjct: 239 NVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELLDVMLG 298

Query: 254 MG 255
            G
Sbjct: 299 EG 300



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 17/222 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI +  L K       L L   +   GL P  YT SIL+NC C   R+     +
Sbjct: 268 PSTVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYL 327

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R     +   VV               YNT++  LC+ G      +L   M  K ++P
Sbjct: 328 LERSTELKWYAGVVA--------------YNTVMSSLCEMGKWRGIMKLLTDMIKKGIEP 373

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  T+  +IR  C     + AK L   +   G   NVVT+N+++     +GK+ EA+ L+
Sbjct: 374 NTRTFNILIRSLCVGGKSSLAKSLIHSL---GFAANVVTYNILLHWFYYHGKLTEANRLI 430

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +M +  + PD  TY  ++DG C   + + A   F+   + G
Sbjct: 431 SVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLTSG 472



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ + YNT+++ L + G   +A + F +M    V PN  +   +I+     ++++ A  L
Sbjct: 96  PNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL 155

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              +   GV+P+V T++ ++  LC+ GK+ EA  +LD M++   RP   TY  ++  +C 
Sbjct: 156 ---IHKSGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCR 212

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR+  AK L   ME +GC
Sbjct: 213 DGRIVEAKLLMAEMERLGC 231


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 26/238 (10%)

Query: 43  LGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS- 100
           L CL   K  D  +  L  R++     PD  +++ +I   C   R      ++ R+ +  
Sbjct: 166 LKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEG 225

Query: 101 --CFTPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGFVD 137
             C +PDVV+F ++I          K C            PD  TYN+I+D LCK   +D
Sbjct: 226 GRC-SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMD 284

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA+ +  +M DK V+P+ VTY ++I G+  +  W E+ ++F +M  +G+ P+ VTF+  M
Sbjct: 285 KAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFM 344

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             LCK+G+  +A  +   M   G  PD  +Y+ LL G+   GR      LF SM   G
Sbjct: 345 SSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKG 402



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT-------VLSLFKRLNST 65
           T   ++A  +FD +LR   +P    S N  L  LA+     +       VL+LF R+   
Sbjct: 55  TFCTDDAHHLFDELLR-QGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICRE 113

Query: 66  GLFP-----DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----- 115
              P      + T+ IL++C C+  R   G   + R+LR+      +  T+ +K      
Sbjct: 114 EAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAK 173

Query: 116 -----------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK--PNVV 156
                            C PDAI+YNT+I  LC      +A ++  +M  +  +  P+VV
Sbjct: 174 RTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVV 233

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           ++ +VI GF    + ++A  LF EM+ +GV P+V T+N I+D LCK   MD+A  +L  M
Sbjct: 234 SFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQM 293

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  GV PD  TYN ++ G+  +G    + ++F  M S G
Sbjct: 294 VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKG 332



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K        +LF  +   G+ PD+ T++ +++  CK   +     V
Sbjct: 230 PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV 289

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +++     PD VT+ ++I                     K   PD +T+++ +  LCK
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCK 349

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G    A+E+F  M  K   P++V+Y+ ++ G+     + +   LF  M D+G+  N   
Sbjct: 350 HGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHC 409

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N+++    K G MDEA  +   M   GVRP+  TY+TL+  FC  GR+  A E F  M 
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 253 SMG 255
           S+G
Sbjct: 470 SIG 472



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 22/239 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
            NI++   AK    D  + +F  +   G+ P++ T+S LI+ FC+MGR++       +++
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 99  RSCFTPDVVTFTSLIK----------------------VCKPDAITYNTIIDGLCKQGFV 136
                P+   + SLI                       + +P+ + +++II  LC +G V
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+++F  +     +P +VT+ S+I G+C      +A  +   M+  G++P+VVT N +
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   CK+GK+D+   L   M+   V+P   TYN +LDG    GR + AK++F  M   G
Sbjct: 590 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG 648



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN ++         +    +   + S G+ PD+ T++ L++ +CK G++  G ++
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L               K  KP  +TYN ++DGL + G    AK++F +M D     
Sbjct: 606 FREMLH--------------KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAV 651

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           ++ TY  +++G C  +  +EA  LF ++     + ++   N +++ L K  + +EA+ L 
Sbjct: 652 DIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLF 711

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +   G+ P+  TY  ++      G V  A  +F SME  GC
Sbjct: 712 AAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGC 754



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 28/236 (11%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           M G L K K +         + S GL  P++   S +I+  C  GRV     V   ++  
Sbjct: 489 MHGDLVKAKEF------ISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHI 542

Query: 101 CFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCKQGFVDKA 139
              P +VTF SLI   C                    +PD +T NT++ G CK G +D  
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDG 602

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             LF +M  K VKP  VTY  V+ G   A   + AK++F EM+D G   ++ T+ +++  
Sbjct: 603 LILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 662

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LC+N   DEA +L   +     + D    NT+++      R   A +LF ++ + G
Sbjct: 663 LCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSG 718



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 22/245 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D M+ +   P  V++ N ++    K+   D  L LF+ +    + P   T++I
Sbjct: 565 EKAFGVLDAMVSVGIEPDVVTN-NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNI 623

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +++   + GR S    +   ++ S    D+ T+  L+K                      
Sbjct: 624 VLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 683

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CK D    NT+I+ L K    ++A +LF  +    + PNV TY  +IR         EA 
Sbjct: 684 CKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEAD 743

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F  M   G  P+    N I+  L + G + +A   +  +    +  +A T + L+  F
Sbjct: 744 TMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLF 803

Query: 236 CLTGR 240
              G+
Sbjct: 804 SSKGK 808


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 131/277 (47%), Gaps = 38/277 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +F+ M R     P V ++  ++    K K       +F R+   G  P+  T+  
Sbjct: 275 EQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 333

Query: 77  LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDVVTFTSLI------- 113
           L++  CK G +S  F V  +++                R    P+VVT+ +L+       
Sbjct: 334 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 393

Query: 114 KV--------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
           KV              C+P+ I Y+ +IDG CK G +D A+E+FL+M      P+V TYT
Sbjct: 394 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 453

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           S+I         + A ++  +M+     PNVVT+  ++D LC+ G+ ++A  LL LM + 
Sbjct: 454 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 513

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  P+  TY  L+DG    G+++ + +LF  M   GC
Sbjct: 514 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 550



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 37/248 (14%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     +D    L K +   G  PD  T+S +I   C   +V   F++   +     TP
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256

Query: 105 DVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELF 143
           DV T+T LI                       C P  +TY  +I    K   V +A ++F
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG----------------VQ 187
            +M D   +PN VTY +++ G C A + ++A  ++ +++                   + 
Sbjct: 317 HRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLA 376

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           PNVVT+  ++D LCK  K+D A  LLD M+  G  P+   Y+ L+DGFC  G+++ A+E+
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436

Query: 248 FVSMESMG 255
           F+ M   G
Sbjct: 437 FLQMTKCG 444



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 121/276 (43%), Gaps = 54/276 (19%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V ++  ++  L K    D    L   + S+G  P+   +  LI+ FCK G++  
Sbjct: 373 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 432

Query: 90  GFVVLGRILRSCFTPDVVTFTSLI-------------KV--------CKPDAITYNTIID 128
              V  ++ +  + P V T+TSLI             KV        C P+ +TY  +ID
Sbjct: 433 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 492

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           GLC+ G  +KA +L   M++K   PNVVTYT++I G   A   + +  LF +M  +G  P
Sbjct: 493 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 552

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQ------------------------------ 218
           N VT+ V+++ LC  G +D+A  LL  M Q                              
Sbjct: 553 NYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEE 612

Query: 219 ---HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
              +G  P A  Y  L+D F   GR+  A EL   M
Sbjct: 613 MESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 648



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSI----LINCFCKMGR 86
           PP    +NI +G +   +   +  +L L +++    L  +   + +       C C +G+
Sbjct: 144 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 203

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
               F ++  ++R  F PD  T              Y+ +I  LC    V+KA  LF +M
Sbjct: 204 FDKAFQLIKEMMRKGFVPDTST--------------YSKVITFLCHATKVEKAFLLFQEM 249

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K   V P+V TYT +I  FC A    +A+ LF EM   G  P VVT+  ++    K  ++
Sbjct: 250 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 309

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +A+ +   M+  G RP+  TY  L+DG C  G ++ A E++  +
Sbjct: 310 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 354



 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I + M+    +P P S FN ++      K Y     L  R+ + G  P    ++I I   
Sbjct: 99  IINMMMTEGCNPNP-SLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 157

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTS------LIKVCKPDAITYNTIIDGLCKQGF 135
           C   ++               +PD++          L   C  + +        LC  G 
Sbjct: 158 CGQEKLP--------------SPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 203

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            DKA +L  +M  K   P+  TY+ VI   C+A    +A  LF EM   GV P+V T+ +
Sbjct: 204 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 263

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++D  CK G +++A  L + M   G  P   TY  L+  +    +V  A ++F  M   G
Sbjct: 264 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 256 C 256
           C
Sbjct: 324 C 324



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 25/245 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  + K+   D  + +  ++      P++ T++ +I+  C++G       +
Sbjct: 447 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 506

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +     +P+VVT+T+LI                     K C P+ +TY  +I+ LC 
Sbjct: 507 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 566

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +DKA+ L  +MK       +  Y   I+GF  +  +  +  +  EM   G  P    
Sbjct: 567 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPV 624

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ--HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           + +++D   K G+++ A  L   M++    V+ D   Y +L+   CL  +V  A  L+  
Sbjct: 625 YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSE 684

Query: 251 MESMG 255
           M   G
Sbjct: 685 MTRRG 689



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 23/210 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K    D  L LF +++  G  P+  T+ +LIN  C  G +    ++
Sbjct: 517 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 576

Query: 94  LGRILRSCFTPDVV------------TFTSLIKVCK--------PDAITYNTIIDGLCKQ 133
           LG  ++  + P  +            +F + + + +        P A  Y  +ID   K 
Sbjct: 577 LGE-MKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 635

Query: 134 GFVDKAKELFLKMKD--KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           G ++ A EL  +M +   +VK +   Y S+I+  C A+   EA RL+ EM  +G  P + 
Sbjct: 636 GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELS 695

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
            F  ++  L +  K DEA  L   +   GV
Sbjct: 696 VFVCLIKGLVEVKKWDEALQLCYGICHEGV 725



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI 121
           ++ +G   D +T     +  CK GR +     L  I R  F  D V  T +I        
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMI-------- 49

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
                  GL +  + D+A     +M+  +  PNVVTY +++ GF         KR+   M
Sbjct: 50  ------SGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMM 103

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           M +G  PN   FN ++   C       A  LL+ M   G  P    YN  +   C
Sbjct: 104 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSIC 158



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           D  T       LCK+G    A ++   ++ ++ K + V  T +I G   A+ ++EA    
Sbjct: 9   DRFTVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFL 65

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
             M      PNVVT+  ++    K  ++     ++++M+  G  P+   +N+L+  +C  
Sbjct: 66  HRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNE 125

Query: 239 GRVNHAKELFVSMESMGC 256
               +A +L   M + GC
Sbjct: 126 KDYAYAYKLLNRMTTCGC 143


>gi|222622724|gb|EEE56856.1| hypothetical protein OsJ_06476 [Oryza sativa Japonica Group]
          Length = 538

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL  FD ML      P  SS NI++   A+   +D    L   ++ +G+ PD+ T+S L
Sbjct: 112 EALKAFDEML-ASGVAPNASSQNILIKMHARRSEFDLAWEL---IHKSGVEPDVGTYSTL 167

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I   C+ G++   + VL  +L               K C+P   TY  I+   C+ G + 
Sbjct: 168 IAGLCRAGKIVEAWGVLDWMLE--------------KNCRPMVQTYTPIVQAYCRDGRIV 213

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +AK L  +M+     PNVVTY  +IR  C  + ++E +++ +E   +  +P+ VT+N+ M
Sbjct: 214 EAKLLMAEMERLGCLPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYM 273

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + LCK GK  EA  LLD+M+  G+ P A+T++ LL+  C + R+
Sbjct: 274 NGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRL 317



 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 25/242 (10%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTHSILINCFCKMGRVSHGF 91
           +N+ +  LA     D V+++F  L  T       G  P++  ++ L+N   + GR     
Sbjct: 55  YNVAMKALALAGDLDEVVAVFAELKRTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 114

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV------------------CKPDAITYNTIIDGLCKQ 133
                +L S   P+  +   LIK+                   +PD  TY+T+I GLC+ 
Sbjct: 115 KAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHKSGVEPDVGTYSTLIAGLCRA 174

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G + +A  +   M +KN +P V TYT +++ +C      EAK L  EM   G  PNVVT+
Sbjct: 175 GKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLPNVVTY 234

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           NV++  LC + K DE   +L        +P   TYN  ++G C  G+   A EL   M  
Sbjct: 235 NVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELLDVMLG 294

Query: 254 MG 255
            G
Sbjct: 295 EG 296



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 17/222 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI +  L K       L L   +   GL P  YT SIL+NC C   R+     +
Sbjct: 264 PSTVTYNIYMNGLCKKGKAKEALELLDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYL 323

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R     +   VV               YNT++  LC+ G      +L   M  K ++P
Sbjct: 324 LERSTELKWYAGVVA--------------YNTVMSSLCEMGKWRGIMKLLTDMIKKGIEP 369

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  T+  +IR  C     + AK L   +   G   NVVT+N+++     +GK+ EA+ L+
Sbjct: 370 NTRTFNILIRSLCVGGKSSLAKSLIHSL---GFAANVVTYNILLHWFYYHGKLTEANRLI 426

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +M +  + PD  TY  ++DG C   + + A   F+   + G
Sbjct: 427 SVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLTSG 468



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 3/139 (2%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ + YNT+++ L + G   +A + F +M    V PN  +   +I+     ++++ A  L
Sbjct: 92  PNVLCYNTLVNALAEAGREGEALKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWEL 151

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              +   GV+P+V T++ ++  LC+ GK+ EA  +LD M++   RP   TY  ++  +C 
Sbjct: 152 ---IHKSGVEPDVGTYSTLIAGLCRAGKIVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCR 208

Query: 238 TGRVNHAKELFVSMESMGC 256
            GR+  AK L   ME +GC
Sbjct: 209 DGRIVEAKLLMAEMERLGC 227


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 21/231 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FNI++     +K+    + +F  +N  G+ P++ T++ LIN  C  G+V+    +
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             +++ SC  P+++T  +L+   CK                    P+  TYN +ID  CK
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
              ++ A  L+  M  K V P+V TY  +I G C   D   A+    EM  + ++ +++T
Sbjct: 333 DENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLIT 392

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +N++MD LC  G+M +   LLD M + G++P   TYNT++DG+   G +  
Sbjct: 393 YNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 22/230 (9%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           DY L++      V+S N ++  L K    D +L   K + + G+ P+  T +ILI+ FC 
Sbjct: 176 DYGLKL-----SVTSCNPLMSGLVKMYKADAIL---KEMKADGICPNEVTFNILIDGFCN 227

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELF 143
              VS    V   + R              +  KP+ +TYN++I+GLC  G V++A  L 
Sbjct: 228 DKNVSVAMKVFAEMNR--------------QGVKPNVVTYNSLINGLCNNGKVNEATTLR 273

Query: 144 LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
            +M +  ++PN++T+ +++ GFC      +A  LF +M  Q + PNV T+N+++D  CK+
Sbjct: 274 DQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKD 333

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
             M++A +L  +M+  GV PD  TYN L+ G C  G +  A+     M++
Sbjct: 334 ENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDT 383



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 78/138 (56%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +T+N +IDG C    V  A ++F +M  + VKPNVVTY S+I G C     NEA  L
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             +M++  ++PN++T N +++  CKN  + +A  L + M +  + P+  TYN L+D +C 
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 238 TGRVNHAKELFVSMESMG 255
              +  A  L+  M   G
Sbjct: 333 DENMEDAFALYRIMLGKG 350



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 171 WNEAKRL--------FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           W +AK L        F    D G++ +V + N +M  L K   M +A ++L  M   G+ 
Sbjct: 156 WADAKNLKTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVK---MYKADAILKEMKADGIC 212

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           P+  T+N L+DGFC    V+ A ++F  M   G
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQG 245


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V  FNI++    KN   D+   + + + NS   +P+L T+S L++  C+ GRV   F 
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +           ++V+   ++    PD +TYN +I+G C+ G  D+A+ +   MK     
Sbjct: 291 LF---------EEMVSRDHIV----PDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCY 337

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PNV  Y++++ G C      +AK +  E+   G++P+ VT+  +++ LC+NGK DEA  L
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           L+ M ++G + D+ T+N LL G C  G+   A ++   +   G
Sbjct: 398 LEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQG 440



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 18/233 (7%)

Query: 26  MLRMHPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
           ++R  PSP  +S+  N++L     +     +L   + L      P++   +IL+   CK 
Sbjct: 190 IVREKPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLTRK---PNVCVFNILVKYHCKN 246

Query: 85  GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
           G +   F ++  +  S F+              P+ +TY+T++DGLC+ G V +A +LF 
Sbjct: 247 GDLDSAFEIVEEMRNSEFS-------------YPNLVTYSTLMDGLCRNGRVKEAFDLFE 293

Query: 145 KMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 203
           +M  ++ + P+ +TY  +I GFC     + A+ +   M   G  PNV  ++ ++D LCK 
Sbjct: 294 EMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKV 353

Query: 204 GKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           GK+++A  +L  +   G++PDA TY +L++  C  G+ + A EL   M+  GC
Sbjct: 354 GKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGC 406



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 23/253 (9%)

Query: 18  EALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EA  +F+ M+ R H  P P++ +N+++    +    D   ++ + + S G +P++Y +S 
Sbjct: 287 EAFDLFEEMVSRDHIVPDPLT-YNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSA 345

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           L++  CK+G++     VL  I  S   PD VT+TSLI                       
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG 405

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C+ D++T+N ++ GLC++G  ++A ++  K+  + V  N  +Y  V+       +   AK
Sbjct: 406 CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAK 465

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L   M+ +G QP+  T N ++  LCK G +D+A+  L  +++ G +P   T+  L+   
Sbjct: 466 ELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLI 525

Query: 236 CLTGRVNHAKELF 248
           C   ++ +  EL 
Sbjct: 526 CRERKLLYVFELL 538


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEG 139

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 140 DIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYS 199

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A E+F +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 200 VLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 260 SLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 319

Query: 245 KE 246
            E
Sbjct: 320 FE 321



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 158 PSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEM 217

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L     P+ VTFT              T+IDG CK G VD A E++ +M  +++ P
Sbjct: 218 FDEMLDKGLVPNGVTFT--------------TLIDGHCKNGRVDLAMEIYKQMLSQSLXP 263

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +++TY ++I G C   D  +A  L  EM  +G++P+ +T+  ++D  CK G ++ A    
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHR 323

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MIQ  +R D   Y  L+ G C   R   A+++   M S+G
Sbjct: 324 KRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVG 365


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ ++  M+    SP  V ++++++    K +  DTVL L   + + G+ P++Y+++I 
Sbjct: 189 EAMEVYKAMVEDGISPS-VRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTIC 247

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I    +  R    + +LG++  S               CKPD +T+  II  LC  G + 
Sbjct: 248 IRVLGQAARFDEAYHILGKMEDSG--------------CKPDVVTHTVIIQVLCDAGRLS 293

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            AK +F KMK  + KP+ VTY +++     + D      ++  M+  G   N+V++  ++
Sbjct: 294 DAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVV 353

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D LC+ G++DEA ++ D M + G+ P+ ++YN+L+ GF      + A ELF  M + G
Sbjct: 354 DALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACG 411



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+ I +  L +   +D    +  ++  +G  PD+ TH+++I   C  GR+S    V
Sbjct: 239 PNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAV 298

Query: 94  LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
             ++  S   PD VT+ +L+  C                       + ++Y  ++D LC+
Sbjct: 299 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQ 358

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A  +F +MK+K + P   +Y S+I GF  A+ ++ A  LF  M   G  PN  T
Sbjct: 359 VGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYT 418

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
             + ++   K+G+  +A    + M   G+ PD    N +L     +GR+  AK +F  ++
Sbjct: 419 HVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELK 478

Query: 253 SMG 255
           +MG
Sbjct: 479 AMG 481



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 129/294 (43%), Gaps = 57/294 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +FD M     SP   S +N ++    K   +D  L LF  +N+ G  P+ YTH +
Sbjct: 363 DEALAVFDEMKEKGMSPEQYS-YNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVL 421

Query: 77  LINCFCKMG-------RVSH---------------------GFVVLGRILRSCF------ 102
            IN + K G       R  H                     G   LG   R  +      
Sbjct: 422 FINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMG 481

Query: 103 -TPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCKQGFVDKAK 140
            +PD +T+T +IK C                      PD +  N++ID L K G  ++A 
Sbjct: 482 VSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAW 541

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           +LF K+K+  ++P   TY +++ G        E  +L  EM      PN++T+N ++D L
Sbjct: 542 QLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCL 601

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            KNG+++ A  +L  M + G  PD  +YNT++ G     R+  A  +F  M+ +
Sbjct: 602 SKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKI 655



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            S+N ++  L      D    LF  +   G  PD +T++++++   K  RV     V   +
Sbjct: 768  SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEM 827

Query: 98   LRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGFV 136
             R  +    VT+ ++I                         P   TY  ++DGL K G +
Sbjct: 828  HRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKM 887

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
              A+ LF +M +   +PN   Y  ++ G   A +     +LF +M++QG+ P++ ++ ++
Sbjct: 888  VDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTIL 947

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +D LC  G++++       + + G+ PD   YN L+DG   + R+  A  LF  M+  G
Sbjct: 948  IDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKG 1006



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 17/215 (7%)

Query: 18   EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
            +A  +F+ ML  +   P  + +NI+L       + + V  LF+++   G+ PD+ +++IL
Sbjct: 889  DAENLFNEMLE-YGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTIL 947

Query: 78   INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFV 136
            I+  C  GR++ G          C+      F  L ++  +PD I YN +IDGL K   +
Sbjct: 948  IDTLCTAGRLNDGL---------CY------FRQLHELGLEPDLIVYNLLIDGLGKSERI 992

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            ++A  LF +MK K + PN+ TY S+I     A    EA +++ E++ +G +P+V T+N +
Sbjct: 993  EEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNAL 1052

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            +     +G  D A +    MI  G +P++ TY  L
Sbjct: 1053 IRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQL 1087



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 21/240 (8%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++N ++  L K+K  +  + L+  L S G  P   T+  L++   K G++     +   +
Sbjct: 838  TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEM 897

Query: 98   LRSCFTPDVVTFTSLIK----------VCK-----------PDAITYNTIIDGLCKQGFV 136
            L     P+   +  L+           VC+           PD  +Y  +ID LC  G +
Sbjct: 898  LEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRL 957

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +     F ++ +  ++P+++ Y  +I G   +    EA  LF EM  +G+ PN+ T+N +
Sbjct: 958  NDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSL 1017

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +  L K GK  EA+ + + +++ G +P  FTYN L+ G+ ++G  ++A   +  M   GC
Sbjct: 1018 ILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGC 1077



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 58/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++N +L CL+KN   +  + +   +   G  PDL +++ ++    K  R+   F 
Sbjct: 588 PPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFR 647

Query: 93  VLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGL 130
           +  + ++    PD  T  +++                        C  D  +++++++G+
Sbjct: 648 MFCQ-MKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGI 706

Query: 131 CKQGFVDK-----------------------------------AKELFLKMKDKNVKPNV 155
            K+  V+K                                   A +LF K K   V    
Sbjct: 707 LKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKT 766

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            +Y S+IRG    N  + A+ LF EM   G  P+  T+N+I+D + K+ +++E   +   
Sbjct: 767 GSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKE 826

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G      TYNT++ G   + R+  A +L+ ++ S G
Sbjct: 827 MHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEG 866



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%)

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +A TYN +I  L K GF  +A E++  M +  + P+V TY+ ++  F    D +    L 
Sbjct: 170 NAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLL 229

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM  +GV+PNV ++ + +  L +  + DEA  +L  M   G +PD  T+  ++   C  
Sbjct: 230 NEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDA 289

Query: 239 GRVNHAKELFVSMES 253
           GR++ AK +F  M++
Sbjct: 290 GRLSDAKAVFWKMKA 304



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 70/135 (51%)

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           +YN++I GL  +  +D A++LF +MK     P+  TY  ++     +    E  ++  EM
Sbjct: 768 SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEM 827

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G +   VT+N I+  L K+ ++++A  L   ++  G  P   TY  LLDG   +G++
Sbjct: 828 HRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKM 887

Query: 242 NHAKELFVSMESMGC 256
             A+ LF  M   GC
Sbjct: 888 VDAENLFNEMLEYGC 902



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           +V K +  T+ TI  G+  +G +  A      M++  +  N  TY  +I     +    E
Sbjct: 130 QVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAE 189

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M++ G+ P+V T++V+M    K   +D    LL+ M   GV+P+ ++Y   + 
Sbjct: 190 AMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIR 249

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                 R + A  +   ME  GC
Sbjct: 250 VLGQAARFDEAYHILGKMEDSGC 272


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+ +F  + R H     +  FN +L  L K++H     SL + L      PD+ T++
Sbjct: 150 PDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVRALERR-FPPDVVTYN 208

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L + +C++   S    +L ++  S   P                 TYN I+ G  + G 
Sbjct: 209 TLADGWCRVKDTSRALDLLRQMAESGIAPT--------------KTTYNVILKGFFRAGQ 254

Query: 136 VDKAKELFLKMK-----DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           +  A   FL+MK     D+N KP+VV+YT++I G   A   ++A++LF EM  +G  P +
Sbjct: 255 LQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTI 314

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+N ++  +CK G +++A ++ D MI+    P+  TY  L+ G C  G+++ A +L   
Sbjct: 315 ATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMER 374

Query: 251 MESMGC 256
           M++ GC
Sbjct: 375 MKNEGC 380



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 123/286 (43%), Gaps = 67/286 (23%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N +     + K     L L +++  +G+ P   T+++++  F + G++ H + 
Sbjct: 201 PPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWN 260

Query: 93  VL------GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
                   G    +C  PDVV++T++I                     + C P   TYN 
Sbjct: 261 FFLQMKKRGSKDENC-KPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNA 319

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I  +CK+G V+ A  +F  M  K+  PNVVTYT +IRG C+    + A +L   M ++G
Sbjct: 320 LIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEG 379

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLM----------------------------- 216
            +P V T+NV++    + G+MD+A  L + M                             
Sbjct: 380 CEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDM 439

Query: 217 ----------IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
                     ++ G  P  F  N +L+G  LTG    +++L    E
Sbjct: 440 AIAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLRMQE 485


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 21/238 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +F +++  L K         LF+++   GLFP+LYT++ L+N +C  G++   F +   +
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
                  +VVT+ +LI  +C+                    P+ ITYNT+I G C  G +
Sbjct: 294 RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNL 353

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           DKA  L  ++K   + P++VTY  +I G+  A +W     L  EM  +G+ P+ VT  V+
Sbjct: 354 DKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVL 413

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +D   +  +M++A  +   M + G+ PD + Y  L+ G C+ G +  + +LF SM  M
Sbjct: 414 IDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEM 471



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 23/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL  F+ M+       P + FN +LG L ++  ++     F  L     F D+Y+  I
Sbjct: 110 DKALIFFNEMVDKGLVFRP-NIFNSLLGSLVRSNCFEKAWLFFNELKERVKF-DVYSFGI 167

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           +I   C+ G +   F +LG +     +P+VV +T+LI  C                    
Sbjct: 168 MIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMG 227

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              +  T+  +I+GL K+G      +LF KMK   + PN+ TY  ++  +C       A 
Sbjct: 228 LVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAF 287

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF EM ++GV+ NVVT+N ++  +C+  ++ EA  L+D M +  V P+  TYNTL+ GF
Sbjct: 288 DLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGF 347

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C  G ++ A  L   ++S G
Sbjct: 348 CDVGNLDKASSLLDQLKSNG 367



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V SF IM+    +N + D    L   L   GL P++  ++ LI+  CK G +    +   
Sbjct: 162 VYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFD 221

Query: 96  RILRSCFTPDVVTFTSLI-----KVCK----------------PDAITYNTIIDGLCKQG 134
           ++       +  TFT LI     K  K                P+  TYN +++  C +G
Sbjct: 222 KMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEG 281

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A +LF +M+++ V+ NVVTY ++I G C      EA++L  +M    V PN++T+N
Sbjct: 282 KICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYN 341

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++   C  G +D+ASSLLD +  +G+ P   TYN L++G+   G      +L   ME  
Sbjct: 342 TLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGR 401

Query: 255 G 255
           G
Sbjct: 402 G 402



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 24/236 (10%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M +   SP  ++ +N ++G      + D   SL  +L S GL P L T++IL
Sbjct: 320 EAEKLVDQMKKAAVSPNLIT-YNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNIL 378

Query: 78  INCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLIKV--------------------- 115
           I  + K G    G   L R +     +P  VT T LI                       
Sbjct: 379 IEGYSKAGNWK-GVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG 437

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD   Y  +I GLC +G + ++ +LF  M + +V+P+ V Y ++I G+C  ++   A 
Sbjct: 438 LVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRAL 497

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           RL  EM  +G+ PNV +++ I+  LCK+GK +EA  LLD MI+  ++P A   N +
Sbjct: 498 RLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 16/212 (7%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK 114
            LSLF      G     ++ S L+       ++ H   ++ +IL +  +    T  SL+ 
Sbjct: 21  ALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVPSLLH 80

Query: 115 VCKPD-------AITYNTIIDGLCKQGFVDKAKELFLKMKDKNV--KPNVVT--YTSVIR 163
               +       A+ Y +II+   K   +DKA   F +M DK +  +PN+      S++R
Sbjct: 81  HLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVR 140

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
             C+   W     LF   + + V+ +V +F +++   C+NG +D++  LL L+   G+ P
Sbjct: 141 SNCFEKAW-----LFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSP 195

Query: 224 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   Y TL+DG C  G +  A+  F  M  MG
Sbjct: 196 NVVIYTTLIDGCCKNGDIERARLFFDKMGEMG 227


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++    K    +   +L   ++  G  PDL T+++L+N +     +     V+  ++
Sbjct: 223 YNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMV 282

Query: 99  RSCFTPDVVTFTSLIK----VCKPD-----------------AITYNTIIDGLCKQGFVD 137
           RS    D  ++  L+K    V  PD                  ++Y+T+I+  C+     
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFCDVVSYSTLIETFCRASNTK 342

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA +LF +M+ K +  NVVT+TS+I+ F    + + AK+L  +M + G+ P+ + +  I+
Sbjct: 343 KAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTIL 402

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D LCK+G +D+A  + + MI+H + PDA +YN+L+ G C +GRV  A +LF  M+   C
Sbjct: 403 DHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 23/221 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           S+N +L    +  H D   S + K +   G F D+ ++S LI  FC+       + +   
Sbjct: 292 SYNQLLKRHCRVSHPDRCYSFMLKEMEPRG-FCDVVSYSTLIETFCRASNTKKAYKLFEE 350

Query: 97  ILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGF 135
           + +     +VVTFTSLIK                        PD I Y TI+D LCK G 
Sbjct: 351 MRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGN 410

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VDKA  +F  M +  + P+ ++Y S+I G C +    EA +LF +M  +   P+ +TF  
Sbjct: 411 VDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKF 470

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           I+  L +  K+  A  + D M+  G   D    +TL+   C
Sbjct: 471 IIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 18/211 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FNI L  L +       +  F  +   G  PD+ +++ILIN   + G+V+    +
Sbjct: 112 PDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
              ++RS  +PD        K C         ++ GLC    VD A E+  + +K   VK
Sbjct: 172 WNAMIRSGVSPDN-------KACA-------ALVVGLCHARKVDLAYEMVAEEIKSARVK 217

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
            ++V Y ++I GFC A    +A+ L   M   G +P++VT+NV+++    N  +  A  +
Sbjct: 218 LSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGV 277

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
           +  M++ G++ DA++YN LL   C   RV+H
Sbjct: 278 MTEMVRSGIQLDAYSYNQLLKRHC---RVSH 305



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  I+  M+ M  S  P +    + G L K K ++ + +L + + + G  PD++  +I +
Sbjct: 63  AEAIYRDMMPMGFSLIPFTYSRFISG-LCKVKKFELIDALLRDMETLGFIPDIWAFNIYL 121

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK-PDAITYNTIIDGLCKQGFVD 137
           +  C+  +V  GF V              TF  +++  + PD ++Y  +I+GL + G V 
Sbjct: 122 DLLCRENKV--GFAVQ-------------TFFCMVQRGREPDVVSYTILINGLFRAGKVT 166

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVI 196
            A E++  M    V P+     +++ G C+A   + A  +  E +    V+ ++V +N +
Sbjct: 167 DAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNAL 226

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +   CK G++++A +L   M + G  PD  TYN LL+ +     +  A+ +   M   G
Sbjct: 227 ISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSG 285



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 18/242 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSS-FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           + A+ +FD M   H S    SS +N  +G L K   ++   ++++ +   G     +T+S
Sbjct: 26  DNAVQVFDEM--RHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYS 83

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
             I+  CK+ +    F ++  +LR   T   +          PD   +N  +D LC++  
Sbjct: 84  RFISGLCKVKK----FELIDALLRDMETLGFI----------PDIWAFNIYLDLLCRENK 129

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V  A + F  M  +  +P+VV+YT +I G   A    +A  ++  M+  GV P+      
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAA 189

Query: 196 IMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           ++  LC   K+D A  ++   I+   V+     YN L+ GFC  GR+  A+ L   M  +
Sbjct: 190 LVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKI 249

Query: 255 GC 256
           GC
Sbjct: 250 GC 251



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V +F  ++    +  +      L  ++   GL PD   ++ +++  CK G V   + +  
Sbjct: 360 VVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFN 419

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
            ++    TPD ++              YN++I GLC+ G V +A +LF  MK K   P+ 
Sbjct: 420 DMIEHEITPDAIS--------------YNSLISGLCRSGRVTEAIKLFEDMKGKECCPDE 465

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +T+  +I G       + A +++ +MMD+G
Sbjct: 466 LTFKFIIGGLIREKKLSAAYKVWDQMMDKG 495



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + Y + I  L K G +D A ++F +M+  + +     Y   I      + +  A+ ++ +
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRD 69

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           MM  G      T++  +  LCK  K +   +LL  M   G  PD + +N  LD  C   +
Sbjct: 70  MMPMGFSLIPFTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENK 129

Query: 241 VNHAKELFVSMESMG 255
           V  A + F  M   G
Sbjct: 130 VGFAVQTFFCMVQRG 144


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 24/245 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
            E++ +F  M +M  SP  V +FN +L  L K         LF  +  T G+ PD YT +
Sbjct: 155 QESVKLFQTMKQMGISPS-VLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFN 213

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LIN FCK   V   F    RI +     D+  +      C PD +TYNTIIDGLC+ G 
Sbjct: 214 TLINGFCKNSMVDEAF----RIFK-----DMELYH-----CNPDVVTYNTIIDGLCRAGK 259

Query: 136 VDKAKELFLKM--KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           V  A  +   M  K  +V PNVV+YT+++RG+C   + +EA  +F +M+ +G++PN VT+
Sbjct: 260 VKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTY 319

Query: 194 NVIMDELCKNGKMDEASSLL----DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           N ++  L +  + DE   +L    D        PDA T+N L+   C  G ++ A ++F 
Sbjct: 320 NTLIKGLSEAHRYDEIKDILIGGNDAFTTFA--PDACTFNILIKAHCDAGHLDAAMKVFQ 377

Query: 250 SMESM 254
            M +M
Sbjct: 378 EMLNM 382



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 68/297 (22%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +FD M R +   P   +FN ++    KN   D    +FK +      PD+ T++ +I+  
Sbjct: 195 LFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGL 254

Query: 82  CKMGRVSHGFVVLGRILRSC-------------------------------------FTP 104
           C+ G+V     VL  +L+                                         P
Sbjct: 255 CRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKP 314

Query: 105 DVVTFTSLIK-----------------------VCKPDAITYNTIIDGLCKQGFVDKAKE 141
           + VT+ +LIK                          PDA T+N +I   C  G +D A +
Sbjct: 315 NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMK 374

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-------QPNVVTFN 194
           +F +M +  + P+  +Y+ +IR  C  N+++ A+ LF E+ ++ V       +P    +N
Sbjct: 375 VFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYN 434

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            + + LC NGK  +A  +   +++ GV+ D  +Y TL+ G C  G+   A EL V M
Sbjct: 435 PMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYELLVLM 490



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 23/247 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT----VLSLFKRLNSTGLFPDL 71
           P + L  FD++     S     SF +ML  L + ++ +     + S+ +R N      D 
Sbjct: 81  PADGLRFFDWVSNKGFSHKE-QSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDR 139

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
           Y +S LI  +   G       +   + +   +P V+TF SL+ +              L 
Sbjct: 140 YFNS-LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSI--------------LL 184

Query: 132 KQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K+G    A +LF +M+    V P+  T+ ++I GFC  +  +EA R+F +M      P+V
Sbjct: 185 KRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDV 244

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           VT+N I+D LC+ GK+  A ++L  M++    V P+  +Y TL+ G+C+   ++ A  +F
Sbjct: 245 VTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVF 304

Query: 249 VSMESMG 255
             M S G
Sbjct: 305 HDMLSRG 311



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 23/152 (15%)

Query: 128 DGLCKQGFVDKAKELFL------KMKDKNVKPNVV----------------TYTSVIRGF 165
           D +  +GF  K +  FL      + ++ NV  N +                 + S+IR +
Sbjct: 89  DWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSY 148

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPD 224
             A  + E+ +LF  M   G+ P+V+TFN ++  L K G+   A  L D M + +GV PD
Sbjct: 149 GNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPD 208

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++T+NTL++GFC    V+ A  +F  ME   C
Sbjct: 209 SYTFNTLINGFCKNSMVDEAFRIFKDMELYHC 240



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 27/244 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++N M   L  N        +F++L   G+  D  ++  LI   C+ G+    + +
Sbjct: 428 PLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGV-QDPPSYKTLITGHCREGKFKPAYEL 486

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCK 132
           L  +LR  F PD+ T+  LI    K+ +                 P A T+++++  L K
Sbjct: 487 LVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAK 546

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVV 191
           + F +++  L   M +K ++ N+   T V+R   +++   E   L + ++ D G    +V
Sbjct: 547 RKFANESFCLVTLMLEKRIRQNIDLSTQVVR-LLFSSAQKEKAFLIVRLLYDNGY---LV 602

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
               ++  LC+N K+ +A +L+   ++     D  T NT+++G C   R + A  L+  +
Sbjct: 603 KMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNEL 662

Query: 252 ESMG 255
             +G
Sbjct: 663 VELG 666



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 27/219 (12%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSH 89
            P   +FNI++       H D  + +F+ + +  L PD  ++S+LI   C   +  R   
Sbjct: 350 APDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAET 409

Query: 90  GF-------VVLGR----ILRSCFTP-------------DVVTFTSLIKVCKPDAITYNT 125
            F       V+LG+     L + + P                 F  L+K    D  +Y T
Sbjct: 410 LFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKT 469

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I G C++G    A EL + M  +   P++ TY  +I G     +   A      M+   
Sbjct: 470 LITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSS 529

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
             P   TF+ ++ EL K    +E+  L+ LM++  +R +
Sbjct: 530 YLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQN 568


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 22/236 (9%)

Query: 25  YMLRMHPS----PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           ++ R  PS    P    S+N +L  L  + H     SL   + + G  P   T+++L+  
Sbjct: 113 HLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKA 172

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDGLCKQGFVDKA 139
            C                 S    D+     L + + KPD  +YNTIIDGLC++G +  A
Sbjct: 173 QC-----------------SDAAADIKDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAAA 215

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
            E+F +M  K + P VVTYT++I        +++A ++F EM  +GV PN+VT++ ++D 
Sbjct: 216 LEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDG 275

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           LCK G+   A  L+D MI+    P+  TY++++DG C    ++ A E+   M   G
Sbjct: 276 LCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQG 331



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 34/250 (13%)

Query: 34  PPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           P  +++N++L     +   D    L LF+ +      PD+ +++ +I+  C+ GR++   
Sbjct: 161 PTAATYNVLLKAQCSDAAADIKDALRLFRNIPK----PDVCSYNTIIDGLCRRGRLAAAL 216

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            +   ++  C  P VVT+T+LI                     +   P+ +TY+++IDGL
Sbjct: 217 EMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGL 276

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK G    A EL  +M  +   PN +TY+SVI G C  +  +EA  +   M  QG +P+ 
Sbjct: 277 CKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDA 336

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY-------NTLLDGFCLTGRVNH 243
             F  ++  LC  G+  EA++ LD MI  G+ P+  T+       NT+L   C  G +  
Sbjct: 337 GLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTVLTALCAKGELGR 396

Query: 244 AKELFVSMES 253
           A +++ S  +
Sbjct: 397 AFQVYQSTRT 406



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 33/238 (13%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL IFD M R   SP  V+ ++ ++  L K     + L L  R+      P+  T+S 
Sbjct: 248 DDALKIFDEMGRRGVSPNLVT-YSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSS 306

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVC------------------- 116
           +I+  CK   +S    VL R+      PD   F  LI  +C                   
Sbjct: 307 VIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAG 366

Query: 117 -KPDAITY-------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
            +P+ +T+       NT++  LC +G + +A +++   + +++  +  T+  ++  F   
Sbjct: 367 IEPNRVTWSLHTRINNTVLTALCAKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFSKK 426

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            +  +A  + ++M+ +   P   T++VI+       K        DL  ++G R   F
Sbjct: 427 KNMEKAAHVVLDMLSERCIPERETWDVIISGYWSKKKGGSQ----DLKRKNGARRKEF 480


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 21/220 (9%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-V 115
            LF  + + G  PD++ ++ILIN +CK  R+     +   ++    TPD VT+ +LI  +
Sbjct: 15  KLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGL 74

Query: 116 CK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           C+                    PD   Y+ ++DGLCKQG++ KA  LF  M+  ++KP++
Sbjct: 75  CQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDL 134

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           V Y  ++   C + +  +A+ LF E+  +G+QPNV  +  I++ LCK G +DEA      
Sbjct: 135 VMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRN 194

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M + G  PD F+YN ++ GF      + A  L   M   G
Sbjct: 195 MEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 234



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 15/211 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +++ M+    +P  V+ +N ++  L +         LFK ++  G  PDL+ +SI
Sbjct: 46  DKAKQLYNEMILQGLTPDKVT-YNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSI 104

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK G +   F    R+ R+  +  +          KPD + YN ++D +CK G +
Sbjct: 105 LLDGLCKQGYLGKAF----RLFRAMQSSSL----------KPDLVMYNILVDAMCKSGNL 150

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A+ELF ++  K ++PNV  YT++I G C     +EA   F  M + G  P+  ++NVI
Sbjct: 151 KDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVI 210

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           +    ++     A  L+  M   G   D  T
Sbjct: 211 IRGFLQHKDESRAVHLIGEMRDRGFIADVGT 241



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 73/118 (61%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A++LF  M  K  KP+V  Y  +I G+C A   ++AK+L+ EM+ QG+ P+ VT+N 
Sbjct: 10  VVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNT 69

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           ++  LC+ G++ EA  L   M ++G  PD F Y+ LLDG C  G +  A  LF +M+S
Sbjct: 70  LIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQS 127



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 54/83 (65%)

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA++LF  M+ +G +P+V  +N++++  CK  ++D+A  L + MI  G+ PD  TYNTL+
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G C  GR+  A++LF +M   G
Sbjct: 72  HGLCQLGRLREAQDLFKNMHKNG 94



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 23/159 (14%)

Query: 24  DYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D    MH +   P + +++I+L  L K  +      LF+ + S+ L PDL  ++IL++  
Sbjct: 85  DLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAM 144

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK G +     +   +      P+V  +T++I                       C PD 
Sbjct: 145 CKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 204

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
            +YN II G  +     +A  L  +M+D+    +V T T
Sbjct: 205 FSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVGTTT 243


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 24/244 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++NIM+  L K K  D    L   + + GL PD+ T+S L++  CK+G++     
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLC 131
           +L  + +    PD  T  S++                         PD +TYNT++DGLC
Sbjct: 396 LLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC 455

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D+A     KM      P+V +YT +I   C +     A  +F EM+ +GV P+ V
Sbjct: 456 KAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTV 515

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++D L +NG  D A   L+L+     +PD   +  +LDG C  G+   A E+   M
Sbjct: 516 LYHSLLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERM 572

Query: 252 ESMG 255
              G
Sbjct: 573 ADAG 576



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 20/237 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G I+TI       +FD++ R       V ++N  L  LAK          F+++   G  
Sbjct: 16  GKISTIVR-----LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYP 70

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD +T+SI++   CK G +     +LG++  S                K + ITY+ +ID
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGV--------------KLNVITYSVVID 116

Query: 129 GLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CK   VD A E+F  M       P+VVT+ S+++G C     +EA  LF  M   G +
Sbjct: 117 GCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           PNV++++ ++D LCK G++DEA  L + M++    PD   Y + + G C   RV  A
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 20/243 (8%)

Query: 17  NEALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF---PDLY 72
           +EA   F+ M+ R HP  P    FN ++  + K+K     + LF+R+ S   F   P+L 
Sbjct: 283 DEACKTFEEMISRNHP--PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++I+++  CK  ++     ++  +     +PDVVT+++L+              DGLCK
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV--------------DGLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A +L  +M  + V P+  T  S++     A   + A      M  +G  P++VT
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK G++DEA + L  M+     PD F+Y  ++   C +G+   A  +F  M 
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506

Query: 253 SMG 255
             G
Sbjct: 507 KRG 509



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 11/217 (5%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N M+  L ++   D     F+ + S    P     + LI+  CK  R+  G ++  R+  
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM-- 327

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                 +  F      C P+  TYN ++D LCK   +D+A+EL  +M +  + P+VVTY+
Sbjct: 328 ----KSMKEF-----YCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C     + A  L  EM  +GV P+  T   I++ L K GK+D A S L+ M   
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  PD  TYNTLLDG C  GR++ A      M +  C
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKC 475



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TY+ ++ GLCK G +DKAKEL  ++++  VK NV+TY+ VI G C A+  ++A  +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 178 FIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           F  M   G   P+VVTFN ++  LC   +M EA  L + M + G  P+  +Y+TLLDG C
Sbjct: 131 FKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC 190

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR++ A  L+  M    C
Sbjct: 191 KAGRLDEACRLWEEMVEKSC 210



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 77/297 (25%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINCFCKMGRVSHGFVVL 94
           V ++++++    K    D  L +FK ++S G   PD+ T + L+   C   R+S  FV+ 
Sbjct: 108 VITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLF 167

Query: 95  GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
             + ++   P+V+++++L+                     K C PD + Y + + GLCK 
Sbjct: 168 EYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE------MMDQGVQ 187
             V +A +   KM  K  K + V +++VI   C      EA+   IE      M+D+  +
Sbjct: 228 NRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACK 287

Query: 188 -------------------------------------------------PNVVTFNVIMD 198
                                                            PN+ T+N+++D
Sbjct: 288 TFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVD 347

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK  ++DEA  L++ M  +G+ PD  TY+ L+DG C  G+++ A +L   M   G
Sbjct: 348 NLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEG 404



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 24/194 (12%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L+K    D  LS  + + + G  PDL T++ L++  CK GR+      L +++ + 
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 102 FTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
            TPDV ++T +I  +C+                    PD + Y++++DGL + G  D A 
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL 534

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL   +K    KP+ V +  V+ G C A    +A  +   M D G   +  T+  ++  L
Sbjct: 535 EL---LKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGL 591

Query: 201 CKNGKMDEASSLLD 214
            K GK+D+A  L+D
Sbjct: 592 RKLGKVDKARQLVD 605


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 21/238 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  F+  +    K+    T   ++KR+   G+ P++ T++ILI   C+ GR+   F + G
Sbjct: 356 VVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYG 415

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
           +IL+    P +VT++SLI   CK                    PD + Y  ++DGL KQG
Sbjct: 416 QILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A    +KM  ++++ NVV + S+I G+C  N ++EA ++F  M   G++P+V TF 
Sbjct: 476 LMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFT 535

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +M      G+++EA  L   M + G+ PDA  Y TL+D FC   +     +LF  M+
Sbjct: 536 TVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +F  ++    K    D    LFK +   G+ PDL  +S LI+ + K G +  G  +
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343

Query: 94  LGRILRSCFTPDVVTFTSLIKV------------------CK---PDAITYNTIIDGLCK 132
             + L      DVV F+S I V                  C+   P+ +TY  +I GLC+
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQ 403

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G + +A  ++ ++  + ++P++VTY+S+I GFC   +      L+ +M+  G  P+VV 
Sbjct: 404 DGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVI 463

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + V++D L K G M  A      M+   +R +   +N+L+DG+C   R + A ++F  M 
Sbjct: 464 YGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMG 523

Query: 253 SMG 255
             G
Sbjct: 524 IYG 526



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 14  ITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           + P   L +FD M R   S   ++  N+++  L K    +     F  L    + PD+ T
Sbjct: 580 MKPTIGLQLFDLMQRNKISAD-IAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVT 638

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           ++ +I  +C + R+     +   +  + F P+ VT T LI V              LCK 
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHV--------------LCKN 684

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
             +D A  +F  M +K  KPN VTY  ++  F  + D   + +LF EM ++G+ P++V++
Sbjct: 685 NDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSY 744

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++I+D LCK G++DEA+++    I   + PD   Y  L+ G+C  GR+  A  L+  M
Sbjct: 745 SIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHM 802



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 14/190 (7%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           G  P++ T   LIN FCK G +   F +  +++               +  +PD I Y+T
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLF-KVMEQ-------------RGIEPDLIAYST 326

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG  K G +    +LF +   K VK +VV ++S I  +  + D   A  ++  M+ QG
Sbjct: 327 LIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQG 386

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + PNVVT+ +++  LC++G++ EA  +   +++ G+ P   TY++L+DGFC  G +    
Sbjct: 387 ISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGF 446

Query: 246 ELFVSMESMG 255
            L+  M  MG
Sbjct: 447 ALYEDMIKMG 456



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M  ++   P V++F  ++         +  L LF R+   GL PD   +  
Sbjct: 513 DEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCT 571

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK  + + G  +   + R+  + D       I VC       N +I  L K   +
Sbjct: 572 LIDAFCKHMKPTIGLQLFDLMQRNKISAD-------IAVC-------NVVIHLLFKCHRI 617

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A + F  + +  ++P++VTY ++I G+C     +EA+R+F  +      PN VT  ++
Sbjct: 618 EDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTIL 677

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LCKN  MD A  +  +M + G +P+A TY  L+D F  +  +  + +LF  M+  G
Sbjct: 678 IHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKG 736



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%), Gaps = 56/271 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L ++        ++ ++   G+ P + T+S LI+ FCK G +  GF +
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +++  + PDVV +  L+                     +  + + + +N++IDG C+
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A ++F  M    +KP+V T+T+V+R         EA  LF  M   G++P+ + 
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALA 568

Query: 193 FNVIMDELCKNGK-----------------------------------MDEASSLLDLMI 217
           +  ++D  CK+ K                                   +++AS   + +I
Sbjct: 569 YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  + PD  TYNT++ G+C   R++ A+ +F
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIF 659



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 39/267 (14%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF--------KRLNSTGL 67
           PN AL  F +       P    SF  +   L +N  +D    +F        K  N  G 
Sbjct: 83  PNSALKYFRWAEISGKDP----SFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGS 138

Query: 68  FPDLYTHS----ILINCFCKMGRVSHGFVV------LG---------RILRSCFTPDVVT 108
             D    +     L+ C C+ G V     +      LG         R+L S    D V 
Sbjct: 139 IRDRSLDADVCKFLMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVD 198

Query: 109 FTS--LIKVCK----PDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
             +    K+C+    P  ++ +  ++D L  +G V KA +    + ++  +  +V+   V
Sbjct: 199 LIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKV 258

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           ++G    +    A RL   ++D G  PNVVTF  +++  CK G+MD A  L  +M Q G+
Sbjct: 259 LKGLS-VDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGI 317

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELF 248
            PD   Y+TL+DG+   G +    +LF
Sbjct: 318 EPDLIAYSTLIDGYFKAGMLGMGHKLF 344



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 19/241 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHS 75
           ++AL IF Y  ++    P  S +  ML  L  +   D +   F +L   G+ P  +  H 
Sbjct: 163 DKALEIFVYSTQLGVVIPQDSVYR-MLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHG 221

Query: 76  ILINC-FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
            +++  FCK G V+        ++   F   +V+   ++K    D I             
Sbjct: 222 FVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQI------------- 267

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             + A  L   + D    PNVVT+ ++I GFC   + + A  LF  M  +G++P+++ ++
Sbjct: 268 --EVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D   K G +     L    +  GV+ D   +++ +D +  +G +  A  ++  M   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 255 G 255
           G
Sbjct: 386 G 386


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ + + ML+   S   V+ +N ++     + +  + L +   +   G  PD ++++
Sbjct: 611 PKKAMLVMNNMLQRGHSANLVT-YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 669

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            LI  FCK+ ++   F +   ++     P+ VT+T+LI                      
Sbjct: 670 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 729

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+P+  TYN +I GL KQ     A+EL   M ++ + PNVVTYT++I G C     + A
Sbjct: 730 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 789

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F +M++QG  PN++T++ ++  L + GK++EA +L   + +HG+ PD  TY  +++ 
Sbjct: 790 LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA 849

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           + ++G+V HA      M   GC
Sbjct: 850 YIMSGKVEHAFNFLGRMIKAGC 871



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 24/239 (10%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L  L++      V+  + R+ S G+ P+L  ++ +IN  CK G V+    ++ ++
Sbjct: 352 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 411

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             S  +PD  T+TS+I                     + C+P+ +TY+T+I+GLC  G V
Sbjct: 412 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 471

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           ++A +L  +M    + P   T T  I   C    + +A RLF++M ++G +PNV T+  +
Sbjct: 472 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 531

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LC +G +  A  L   M + GV P+  TYN L++      R+ +A   FV +  MG
Sbjct: 532 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA---FVVLNLMG 587



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 22/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I D M R     P   S+  ++    K    ++   LF  +   GL P+  T++ LI
Sbjct: 649 ALRILDLM-RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 707

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
           + +CK  ++     +L  + RS   P+V T+  LI             ++CK        
Sbjct: 708 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 767

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY  +IDGLCK G    A E+F KM ++   PN++TY+S+IR         EA+ L
Sbjct: 768 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 827

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F E+   G+ P+ +T+  +++    +GK++ A + L  MI+ G +P  +TY  L+ G 
Sbjct: 828 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 885



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L  +      + LF R++  G+FP+  T++ LIN   +  R+ + FVV
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 582

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + R+        FT+++        TYN +I G C  G   KA  +   M  +    
Sbjct: 583 LNLMGRNGL------FTNIV--------TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 628

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+VTY ++I+G+C + +   A R+   M D G +P+  ++  ++   CK  KM+ A  L 
Sbjct: 629 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  G+ P+  TY  L+DG+C   +++ A  L   M+  GC
Sbjct: 689 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 14/201 (6%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           +S    L+ +GL   L+ +S L+    ++G  +    V+ R  R            L + 
Sbjct: 335 MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTA---AVMDRYHRM-----------LSEG 380

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + YN +I+ LCK G V  A+ +  K+ +  + P+  TYTS+I G C  +D + A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M  +G +PN VT++ +++ LC +G+++EA  L+  MI HG+ P A T    +   
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 500

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G    A  LFV M++ GC
Sbjct: 501 CDMGCYEDAWRLFVDMKNKGC 521



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P V ++N+++  L K  ++     L K +   G+FP++ T++ +I+  CK G  S    +
Sbjct: 733  PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 94   LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
              +++     P+++T++SLI+                        PD ITY  +I+    
Sbjct: 793  FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 133  QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--- 189
             G V+ A     +M     +P + TY  +I+G    N++  A +    + D  V PN   
Sbjct: 853  SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSF 908

Query: 190  -------------------------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
                                     V   N ++  L   G+  EA+ LL  MI  G+ PD
Sbjct: 909  GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 968

Query: 225  AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
               YN+LL        V+ A  +F  M + GC
Sbjct: 969  QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 1000



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 19   ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
            AL +F+ M+      P + +++ ++  L +    +   +LF  L   GL PD  T+  +I
Sbjct: 789  ALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 847

Query: 79   NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL------CK 132
              +   G+V H F  LGR++++   P + T+  LIK  K + +  +  +  L      C 
Sbjct: 848  EAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS 907

Query: 133  QGF----VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
             G+     D    +  K+ + +   +V    +++     A  W EA  L   M+ QG+ P
Sbjct: 908  FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCP 967

Query: 189  NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
            +   +N ++  L +   +D A  +   M   G       Y  L+   C   R   A+  F
Sbjct: 968  DQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITF 1027

Query: 249  VSM 251
             +M
Sbjct: 1028 ENM 1030



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P   ++N +L  L + ++ D  + +FK +++ G    L  +  LI   C++ R     + 
Sbjct: 967  PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 1026

Query: 94   LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
               +              L++   PD +    +IDGL + G+ D   E    M+ +   P
Sbjct: 1027 FENM--------------LMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMP 1072

Query: 154  NVVTYTSVIR 163
            +   YT + R
Sbjct: 1073 SFHIYTILAR 1082



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 118  PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            PD   YN+++  L +   VD A  +F  M  +  + ++  Y  +I   C  +   EA+  
Sbjct: 967  PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 1026

Query: 178  FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            F  M+ +   P+ V   V++D L ++G  D     L +M      P    Y  L
Sbjct: 1027 FENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 1080


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 126/245 (51%), Gaps = 23/245 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L +    +  L + +++   G  P+  +++ L++ FCK  ++     
Sbjct: 94  PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 153

Query: 93  VLGRIL-RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            L  ++ R C+ PD+V++ +L+                     K C P  I+YNT+IDGL
Sbjct: 154 FLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 212

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
            K G   +A EL  +M  K ++P+++TY+++  G C  +   +A R F ++ D G++PN 
Sbjct: 213 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 272

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V +N I+  LCK  +   A  L   MI +G  P+  TY  L++G    G +  A++L   
Sbjct: 273 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDE 332

Query: 251 MESMG 255
           + S G
Sbjct: 333 LCSRG 337



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 21/244 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+NI+L  L   + ++    L   +   G  P++ T ++LI+  C+ G V     V
Sbjct: 60  PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L +I +   TP+ +++  L+                     + C PD ++YNT++  LC+
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 179

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD A EL  ++KDK   P +++Y +VI G   A    EA  L  EM+ +G+QP+++T
Sbjct: 180 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 239

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           ++ I   LC+  ++++A      +   G+RP+   YN ++ G C     + A +LF  M 
Sbjct: 240 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI 299

Query: 253 SMGC 256
             GC
Sbjct: 300 GNGC 303



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+ + D M R     P + ++N+++  + +    D  +   K L S G  P+  +++I+
Sbjct: 10  QAMKLLDEM-RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           +   C   R      ++G + +    P+VVTF  LI                       C
Sbjct: 69  LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 128

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P++++YN ++   CKQ  +DKA      M  +   P++V+Y +++   C + + + A  
Sbjct: 129 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 188

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  ++ D+G  P ++++N ++D L K GK  EA  LL+ M+  G++PD  TY+T+  G C
Sbjct: 189 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 248

Query: 237 LTGRVNHAKELFVSMESMG 255
              R+  A   F  ++ MG
Sbjct: 249 REDRIEDAIRAFGKVQDMG 267



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 14/209 (6%)

Query: 48  KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           K   Y   + L   +   G  PD+ T+++++N  C+ GRV              F  ++ 
Sbjct: 4   KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIE---------FLKNLP 54

Query: 108 TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
           ++      C+P+ ++YN ++ GLC     + A+EL  +M  K   PNVVT+  +I   C 
Sbjct: 55  SYG-----CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 109

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
                 A  +  ++   G  PN +++N ++   CK  KMD+A + LDLM+  G  PD  +
Sbjct: 110 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 169

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           YNTLL   C +G V+ A EL   ++  GC
Sbjct: 170 YNTLLTALCRSGEVDVAVELLHQLKDKGC 198



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 21/209 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+N +L    K K  D  ++    + S G +PD+ +++ L+   C+ G V     +
Sbjct: 130 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 189

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L ++      P ++++ ++I                     K  +PD ITY+TI  GLC+
Sbjct: 190 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 249

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +  ++ A   F K++D  ++PN V Y ++I G C   + + A  LF  M+  G  PN  T
Sbjct: 250 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 309

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           + ++++ L   G + EA  LLD +   GV
Sbjct: 310 YTILIEGLAYEGLIKEARDLLDELCSRGV 338



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+    +A +L  +M+DK   P++VTY  V+ G C     ++A      +   G +PN 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V++N+++  LC   + ++A  L+  M Q G  P+  T+N L+   C  G V  A E+   
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 251 MESMGC 256
           +   GC
Sbjct: 123 IPKYGC 128


>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 9   GDITTITPNEALCIFDYMLRMHPS-PPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLN-- 63
             I+TI  N+++    +M + HPS  P  S+++I+L   C + +  Y T+  + + LN  
Sbjct: 113 ASISTI--NDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLM 170

Query: 64  -STGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---- 117
            S G+ PD  T  + +   C   RV     ++  +     +PD+ ++  L+K +CK    
Sbjct: 171 VSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTL 230

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               P+ +TY  +ID +C    + +A  L   ++++  KP+   Y ++++G+C  +  +E
Sbjct: 231 SLVYPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSE 290

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M ++GV+P+++T+N ++  L K+G++ EA  LL +M + G  PD  TY +L++
Sbjct: 291 AIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMN 350

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
           G C  G    A  L   ME  GC
Sbjct: 351 GMCRKGETLAALALLEEMEMKGC 373



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I++  +   K+      L   L   G  PD + ++ ++  +C + R S    V
Sbjct: 235 PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEV 294

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+                K  +PD ITYNT+I GL K G V +AK+L   M +K   P
Sbjct: 295 YNRMKE--------------KGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFP 340

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTYTS++ G C   +   A  L  EM  +G  PN  T+N ++  LCK+   D+A  L 
Sbjct: 341 DEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELY 400

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             M   G++ D  +Y T +   C  GRV  A E+F
Sbjct: 401 GAMKSDGLKLDMASYATFVRALCSVGRVADAYEVF 435



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            + ++ R+   G+ PDL T++ LI    K GRVS    +L  +      PD VT+TSL+ 
Sbjct: 291 AIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMN 350

Query: 114 --------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                               K C P+  TYNT++ GLCK    DKA EL+  MK   +K 
Sbjct: 351 GMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKL 410

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++ +Y + +R  C      +A  +F   ++     +V  ++ +   L
Sbjct: 411 DMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTL 457


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 21/243 (8%)

Query: 35  PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVL 94
            VSSFNIM+  L  N   D V+S+++ +  +G   D  T+ IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 95  GRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQ 133
               +     D   ++++I                       CKP+A  YNT+I+GL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 177

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
              + A  +F +M   +  PN++TY ++I G C    + EA  L  E++D+G+ P V+T+
Sbjct: 178 SKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITY 237

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           +++M  LC + K+++A  L + +   G +PD   +N L+ G C  G++  A  L+  M  
Sbjct: 238 SMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNR 297

Query: 254 MGC 256
             C
Sbjct: 298 WKC 300



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 22/249 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E + I++ M +       ++ + I++    KN + D  L + +     G   D + +S 
Sbjct: 76  DEVISIWELMKKSGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +IN  CK   +     VL  +++S   P+   + +LI                       
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ ITYNT+I+GLCK     +A  L  ++ DK + P V+TY+ +++G C  +   +A 
Sbjct: 195 CSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKAL 254

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +L+ ++  +G +P+V   NV++  LC  GKM  A SL   M +    P+  ++NTL++GF
Sbjct: 255 QLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGF 314

Query: 236 CLTGRVNHA 244
              G + +A
Sbjct: 315 YKDGDIRNA 323



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 15/228 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           + A+ + + M++     P    +N ++  L     ++  + +F+ + +    P++ T++ 
Sbjct: 146 DRAVSVLNGMIK-SGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNT 204

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  CK       + ++  +L     P V+T++ L+K              GLC    V
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMK--------------GLCLDHKV 250

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA +L+ ++  K  KP+V  +  +I G C       A  L+ +M      PN+V+ N +
Sbjct: 251 EKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTL 310

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M+   K+G +  A  +   ++++G+ PD  +YN  L G C   R++ A
Sbjct: 311 MEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D A+ ++ ++ +  V P+ V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            +FN++M  L  NGK+DE  S+ +LM + G   D+ TY  L+ GFC  G ++ +  +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 251 MESMG 255
            E  G
Sbjct: 120 AEQKG 124



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PDA+ YN +++G  +   +    EL+  M  +  + +V ++  ++RG       +E   +
Sbjct: 23  PDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVISI 81

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           +  M   G   + +T+ +++   CKNG +D++  +L++  Q G   DAF Y+ +++G C 
Sbjct: 82  WELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCK 141

Query: 238 TGRVNHAKELFVSMESMGC 256
              ++ A  +   M   GC
Sbjct: 142 EANLDRAVSVLNGMIKSGC 160


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 122/257 (47%), Gaps = 25/257 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF+ ML    SP  V+   ++ G   K    D  LSL +RL  TG  P    +S LI+  
Sbjct: 106 IFEEMLSKGHSPELVTYATVVNG-YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 164

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK  R      +    + +    DV+ +TS I                       C PD 
Sbjct: 165 CKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 222

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ++YN II  LCK   V +AKEL  +  ++   P V   T ++ G C +    EA  +   
Sbjct: 223 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 282

Query: 181 MMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M++ G + P+VVT++ ++D LCK  ++D+A  +L  M + G  PD  TY  ++D FC  G
Sbjct: 283 MLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVG 342

Query: 240 RVNHAKELFVSMESMGC 256
           R++ A+ELF  M   GC
Sbjct: 343 RLDEARELFQRMHERGC 359



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 24/260 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+AL IF  M+ M   P     + +++G L K    D   S F+++  +G  PD  T+++
Sbjct: 31  NKALQIFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTV 89

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++   K  +   G  +   +L    +P++VT+ +++   CK                  
Sbjct: 90  LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 149

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    Y+T+IDGLCK    ++A+ELF +M   +V+ +V+ YTS I G C A   +EAK
Sbjct: 150 RSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAK 207

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            + ++M++ G  P+ V++NVI+  LCK+ ++ EA  L+D  ++    P       L+DG 
Sbjct: 208 AVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGL 267

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C + RV  A  +   M   G
Sbjct: 268 CKSRRVEEACVILERMLEAG 287



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 23/236 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F  ++  L +    +  L +F ++    + PD + ++++I   CK+ ++      
Sbjct: 12  PTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 71

Query: 94  LGRILRSCFTPDVVTFT----SLIKVCK-----------------PDAITYNTIIDGLCK 132
             ++++S   PD VT+T    SL K CK                 P+ +TY T+++G CK
Sbjct: 72  FEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 131

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  L  ++K     P+   Y+++I G C  +   EA+ LF EM    VQ +V+ 
Sbjct: 132 AGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQ-DVIV 189

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   +  LCK GK+DEA ++   MI+ G  PD  +YN ++   C   RV+ AKEL 
Sbjct: 190 YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 245



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 14/205 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+    +P PVS +N+++  L K+        L  +       P +   ++
Sbjct: 204 DEAKAVHVKMIEAGCAPDPVS-YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTV 262

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK  RV    V+L R+L +                 P  +TY+ +IDGLCK   +
Sbjct: 263 LVDGLCKSRRVEEACVILERMLEAGDRA-------------PSVVTYSAVIDGLCKADRL 309

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A  +  KM+     P+VVTYT++I  FC     +EA+ LF  M ++G   +VV +N++
Sbjct: 310 DDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNIL 369

Query: 197 MDELCKNGKMDEASSLLDLMIQHGV 221
           +   C+  K+DEA ++++ M   G+
Sbjct: 370 IRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 93  VLGRILRSCFTPDVVTFTSLI-KVC--------------------KPDAITYNTIIDGLC 131
           +LG +  +  TP +VTF SLI K+C                    KPDA  Y  +I  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K   +D A   F +M      P+ VTYT ++     A  W +  ++F EM+ +G  P +V
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           T+  +++  CK G++D+A SL+  +   G  P    Y+TL+DG C   R   A+ELF
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF 177



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%)

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L  +MK   + P +VT+ S+IR  C  N  N+A ++F +M+D  V+P+   + V++  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K  K+D A+S  + M+Q G  PD  TY  L+       +     ++F  M S G
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKG 114



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM   G+ P +VTF  ++ +LC+    ++A  +   MI   V+PDAF Y  ++   C
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 237 LTGRVNHAKELFVSMESMGC 256
              +++ A   F  M   GC
Sbjct: 61  KINKLDLAASYFEQMVQSGC 80


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +FD M R+  +P  V+   ++ G   +  H +   +LF  +   G+ P+LYT++ L
Sbjct: 56  EARRVFDVMPRLGVAPNEVTYTALINGYFVRG-HREMGFALFAEMRRDGVEPNLYTYNCL 114

Query: 78  INCFCKMGR--------------------VSHGFVVLGRILRSCFTPDVVTFTSLIKV-C 116
           I  +C+ G                     VS+  ++ G    S     V  F ++ +   
Sbjct: 115 IGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGI 174

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +P  +T+N +IDG  K G +  A   F +MK   + P+VVTY  +I GFC   D   A R
Sbjct: 175 RPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVR 234

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            F++M ++G+ P  VT+ +++    K  +MD A  +L  M + G+  D  +Y  LL   C
Sbjct: 235 AFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALC 294

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G++ HA++LF SM+  G
Sbjct: 295 MEGKMMHARKLFQSMDLKG 313



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V S+NI++  L ++      + LF+ +   G+ P + T ++LI+ + K G++++      
Sbjct: 143 VVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFN 202

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           ++  +   P VVT              YN +I G C+   + +A   FL MK++ + P  
Sbjct: 203 QMKAAGLPPSVVT--------------YNELICGFCRVRDIARAVRAFLDMKERGLAPTK 248

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYT +I  F   N+ + A  +  EM   G++ +V ++ V++  LC  GKM  A  L   
Sbjct: 249 VTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQS 308

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   GV+P++  Y+ ++ G+   G    A  L + M   G
Sbjct: 309 MDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNG 348



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+ M R     P + +FN+++    K       L  F ++ + GL P + T++ 
Sbjct: 160 KDAVQLFEAM-RREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNE 218

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           LI  FC++  ++        +      P  VT+T LI                       
Sbjct: 219 LICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAG 278

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D  +Y  ++  LC +G +  A++LF  M  K VKPN V Y  +I G+       +A 
Sbjct: 279 LEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKAL 338

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           RL +EM   G+ PNV ++ + +  LC  GK  EA +L+D M   G++        LLD 
Sbjct: 339 RLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGLQTSETICRILLDA 397



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTP-DVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           + ++   C    V     VL R  +S     DV   T+L+ VC              C+ 
Sbjct: 6   AAVVRRLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVC--------------CQS 51

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G V +A+ +F  M    V PN VTYT++I G+           LF EM   GV+PN+ T+
Sbjct: 52  GDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTY 111

Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           N ++ E C+ G+   A  L D M   GV  +  +YN L+ G C   ++  A +LF +M  
Sbjct: 112 NCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRR 171

Query: 254 MG 255
            G
Sbjct: 172 EG 173


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 59/295 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A+ +F+ M R+H   P + +  ++L  L K+     V  ++KR+   G+ P++Y ++ 
Sbjct: 143 QDAIQVFEQM-RLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNC 201

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKP----------------- 118
           L +   K G V     +L  +       D+ T+ +L+ + CK                  
Sbjct: 202 LFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMEREG 261

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              D ++YN++I G CK+G + +A  +F ++  KN  PN VTYT++I G+C  N+  EA 
Sbjct: 262 INLDIVSYNSLIYGFCKEGRMREAMRMFSEI--KNATPNHVTYTTLIDGYCKTNELEEAL 319

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL---------------------- 213
           ++   M  +G+ P VVT+N I+ +LC++G++ +A+ LL                      
Sbjct: 320 KMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLINAY 379

Query: 214 ----DL---------MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
               DL         M++ G++PD FTY  L+ GFC T  +  AKEL  SM   G
Sbjct: 380 CKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAG 434



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 117/274 (42%), Gaps = 58/274 (21%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++N +L    K   +   LS+  R+   G+  D+ +++ LI  FCK GR+     +   I
Sbjct: 233 TYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEI 292

Query: 98  LRSCFTPDVVTFTSLI-------------KVCK--------PDAITYNTIIDGLCKQGFV 136
             +  TP+ VT+T+LI             K+CK        P  +TYN+I+  LC+ G +
Sbjct: 293 KNA--TPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRI 350

Query: 137 DKAKELF-------------------------------LKMKDK----NVKPNVVTYTSV 161
             A +L                                LK K+K     +KP+  TY ++
Sbjct: 351 RDANKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKAL 410

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I GFC  N+   AK L   M+D G  P+  T++ I+D   K   MD   +L D  +  G+
Sbjct: 411 IHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGI 470

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             D   Y  L+   C   R+  A+ LF  ME  G
Sbjct: 471 CLDVSVYRALIRSSCKVERIQCAERLFYHMEGKG 504



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 5/216 (2%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH--GFVVLGRILR 99
           M+  L ++KH+ T   + +++            S L+         S    ++V+    +
Sbjct: 80  MIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTHDNQEVNSQVLSWLVI-HYAK 138

Query: 100 SCFTPDVVTFTSLIKV--CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
           S  T D +     +++   KP       +++ L K G      +++ +M    V PN+  
Sbjct: 139 SKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYI 198

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +      + D   A++L  EM  +GV  ++ T+N ++   CK G   EA S+ + M 
Sbjct: 199 YNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRME 258

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + G+  D  +YN+L+ GFC  GR+  A  +F  +++
Sbjct: 259 REGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKN 294



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 12/206 (5%)

Query: 58  LFKRLNSTGLFPDLYTHSI-----LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
            FK L+S    P  Y+HS+     +I+   +         VL +I    F       ++L
Sbjct: 60  FFKWLDS---IPH-YSHSLQCSWAMIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTL 115

Query: 113 IKVCKPDAITYNTI---IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
           ++      +    +   +    K      A ++F +M+   VKP++   T ++       
Sbjct: 116 VRTHDNQEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDG 175

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             +   +++  M+  GV PN+  +N +     K+G ++ A  LL+ M   GV  D FTYN
Sbjct: 176 VTHMVWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYN 235

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMG 255
           TLL  +C  G    A  +   ME  G
Sbjct: 236 TLLSLYCKKGMHYEALSIQNRMEREG 261


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G V  A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 22/258 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWGLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           N  CK  ++     +   +L +   P+ VTFT+LI                     +   
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLS 273

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ITYNT+I GLCK+G + +A++L  +M  K +KP+ +TYT++I G C   D   A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEY 333

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++P+  TY  +++ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 238 TGRVNHAKELFVSMESMG 255
            G V    +L   M+  G
Sbjct: 394 KGDVWTGSKLLKEMQRDG 411



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWGL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  A  +   M+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306


>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 25/267 (9%)

Query: 15  TPNEALCIFDYMLRMHPS-PPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDL 71
           T N+++    +M++  PS  P  S+++I+L   C + N     V      + + G  PD 
Sbjct: 109 TVNDSISFLRHMIKSQPSFSPERSTYHILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDR 168

Query: 72  YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------- 117
            T  I +   C  GR  H   ++  +      PD  T+  +I+ +CK             
Sbjct: 169 VTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDE 228

Query: 118 --------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN 169
                   PD +TY  +ID +C    + +A  L   + +   KP+   Y ++++G+C  +
Sbjct: 229 LQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILD 288

Query: 170 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYN 229
             +EA  ++ +M ++GV+P++VT+N ++  L K+G++ EA   LD+M + G  PDA TY 
Sbjct: 289 KGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYT 348

Query: 230 TLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L++G C  G    A  L   ME+ GC
Sbjct: 349 SLMNGLCREGNALGALALLEEMEAKGC 375



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 31/238 (13%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMG 85
           L +  SPP   ++N ++  L K +   TV +    L NS  L PDL T++ILI+  C   
Sbjct: 194 LSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCN-- 251

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-----KPDAITYNTIIDGLCKQGFVDKAK 140
                    G+ LR          T L++V      KPD   YNTI+ G C    +DK  
Sbjct: 252 ---------GKNLREA--------TRLLEVLGEAGFKPDCYVYNTIMKGYC---ILDKGS 291

Query: 141 E---LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           E   ++ KMK++ V+P++VTY ++I G   +    EA++    M + G  P+ VT+  +M
Sbjct: 292 EAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLM 351

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + LC+ G    A +LL+ M   G  P++ TYNTLL G C    +    EL+  M+S G
Sbjct: 352 NGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVMKSGG 409



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 21/219 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++ I++  +   K+      L + L   G  PD Y ++ ++  +C + + S    V
Sbjct: 237 PDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGV 296

Query: 94  LGRILRSCFTPDVVTFTSLI---------KVCK------------PDAITYNTIIDGLCK 132
             ++      PD+VT+ +LI         K  +            PDA+TY ++++GLC+
Sbjct: 297 YKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCR 356

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G    A  L  +M+ K   PN  TY +++ G C          L+  M   G++    +
Sbjct: 357 EGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKLEKAS 416

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +   +  LCK G++ EA    D +++     D   Y+TL
Sbjct: 417 YATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTL 455



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 21/167 (12%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            + ++K++   G+ PDL T++ LI    K GRV      L  +      PD VT+TSL+ 
Sbjct: 293 AIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMN 352

Query: 114 --------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                               K C P++ TYNT++ GLCK   +++  EL+  MK   +K 
Sbjct: 353 GLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKL 412

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
              +Y + +R  C      EA   F  +++     +V  ++ + + L
Sbjct: 413 EKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTLENSL 459


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V +FN+++  L K         +F  +  TGL P   + + LIN +CK G +  GF 
Sbjct: 229 PPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFR 288

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +           +   F        PD  TY+ +IDGLCK+  ++ A  LF +M D+ + 
Sbjct: 289 L------KMVMEEFRVF--------PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLV 334

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN VT+T++I G C     + A  ++ +M  +G++ ++V +N ++D LCK G   EA   
Sbjct: 335 PNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKF 394

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  M + G+ PD FTY TLLDG C  G +  A E+   M   G
Sbjct: 395 VGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEG 437



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  IFD + +    P  VS FN ++    K+ + +    L   +    +FPD++T+S L
Sbjct: 250 DAQLIFDEIRKTGLQPTAVS-FNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSAL 308

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
           I+  CK  ++     +   +      P+ VTFT+LI                     K  
Sbjct: 309 IDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGL 368

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K D + YNT+IDGLCK G+  +A++   +M  + + P+  TYT+++ G C   D   A  
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +  EM+ +G+Q + V F  I+  LC++GK+ +A   L  M++ G++PD  TY  ++DGFC
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFC 488

Query: 237 LTGRVNHAKELFVSMESMG 255
             G V    +L   M+S G
Sbjct: 489 KKGDVKMGFKLLKEMQSDG 507



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 21/229 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +F  ++    KN   D  L +++++ + GL  DL  ++ LI+  CK G        
Sbjct: 335 PNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKF 394

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
           +G + +    PD  T+T+L+   CK                     D + +  II GLC+
Sbjct: 395 VGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCR 454

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A+    +M    +KP+  TYT V+ GFC   D     +L  EM   G  P V+T
Sbjct: 455 DGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVIT 514

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +NV+M+ LCK G++  A  LL+ M+  GV PD  TYN LL G C  G++
Sbjct: 515 YNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKL 563



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  L K    +    LFK +   GL P+  T + LIN  CK GRV     +
Sbjct: 300 PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEI 359

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
             ++       D+V + +LI  +CK                    PD  TY T++DG CK
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCK 419

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E+  +M  + ++ + V +T++I G C      +A+R   EM+  G++P+  T
Sbjct: 420 EGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGT 479

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + ++MD  CK G +     LL  M   G  P   TYN L++G C  G+V +A  L  +M 
Sbjct: 480 YTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAML 539

Query: 253 SMG 255
           ++G
Sbjct: 540 NLG 542


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 21/238 (8%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  F+  +    K+    T   ++KR+   G+ P++ T++ILI   C+ GR+   F + G
Sbjct: 356 VVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYG 415

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
           +IL+    P +VT++SLI   CK                    PD + Y  ++DGL KQG
Sbjct: 416 QILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            +  A    +KM  ++++ NVV + S+I G+C  N ++EA ++F  M   G++P+V TF 
Sbjct: 476 LMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFT 535

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            +M      G+++EA  L   M + G+ PDA  Y TL+D FC   +     +LF  M+
Sbjct: 536 TVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P V +F  ++    K    D    LFK +   G+ PDL  +S LI+ + K G +  G  
Sbjct: 283 APNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHK 342

Query: 93  VLGRILRSCFTPDVVTFTSLIKV------------------CK---PDAITYNTIIDGLC 131
           +  + L      DVV F+S I V                  C+   P+ +TY  +I GLC
Sbjct: 343 LFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLC 402

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G + +A  ++ ++  + ++P++VTY+S+I GFC   +      L+ +M+  G  P+VV
Sbjct: 403 QDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVV 462

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            + V++D L K G M  A      M+   +R +   +N+L+DG+C   R + A ++F  M
Sbjct: 463 IYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLM 522

Query: 252 ESMG 255
              G
Sbjct: 523 GIYG 526



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%), Gaps = 56/271 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L ++        ++ ++   G+ P + T+S LI+ FCK G +  GF +
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +++  + PDVV +  L+                     +  + + + +N++IDG C+
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A ++F  M    +KP+V T+T+V+R         EA  LF  M   G++P+ + 
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALA 568

Query: 193 FNVIMDELCKNGK-----------------------------------MDEASSLLDLMI 217
           +  ++D  CK+ K                                   +++AS   + +I
Sbjct: 569 YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +  + PD  TYNT++ G+C   R++ A+ +F
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIF 659



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 39/267 (14%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLF--------KRLNSTGL 67
           PN AL  F +       P    SF  +   L +N  +D    +F        K  N  G 
Sbjct: 83  PNSALKYFRWAEISGKDP----SFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGS 138

Query: 68  FPDLYTHS----ILINCFCKMGRVSHGFVV------LG---------RILRSCFTPDVVT 108
             D    +     L+ C C+ G V     +      LG         R+L S    D V 
Sbjct: 139 IRDRSLDADVCKFLMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVD 198

Query: 109 FTS--LIKVCK----PDAIT-YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
             +    K+C+    P  ++ +  ++D L  +G V KA +    + ++  +  +V+   V
Sbjct: 199 LIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKV 258

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           ++G    +    A RL   ++D G  PNVVTF  +++  CK G+MD A  L  +M Q G+
Sbjct: 259 LKGLS-VDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGI 317

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELF 248
            PD   Y+TL+DG+   G +    +LF
Sbjct: 318 EPDLIAYSTLIDGYFKAGMLGMGHKLF 344



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 15/186 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL +F  M  ++   P V++F  ++         +  L LF R+   GL PD   +  
Sbjct: 513 DEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCT 571

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ FCK  + + G  +   + R+  + D       I VC       N +I  L K   +
Sbjct: 572 LIDAFCKHMKPTIGLQLFDLMQRNKISAD-------IAVC-------NVVIHLLFKCHRI 617

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A + F  + +  ++P++VTY ++I G+C     +EA+R+F  +      PN VT  ++
Sbjct: 618 EDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTIL 677

Query: 197 MDELCK 202
           +  LCK
Sbjct: 678 IHVLCK 683



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 19/241 (7%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTHS 75
           ++AL IF Y  ++    P  S +  ML  L  +   D +   F +L   G+ P  +  H 
Sbjct: 163 DKALEIFVYSTQLGVVIPQDSVYR-MLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHG 221

Query: 76  ILINC-FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
            +++  FCK G V+        ++   F   +V+   ++K    D I             
Sbjct: 222 FVLDALFCK-GEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQI------------- 267

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             + A  L   + D    PNVVT+ ++I GFC   + + A  LF  M  +G++P+++ ++
Sbjct: 268 --EVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            ++D   K G +     L    +  GV+ D   +++ +D +  +G +  A  ++  M   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 255 G 255
           G
Sbjct: 386 G 386



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
                +++ M++M   PP V  + +++  L+K       +    ++    +  ++   + 
Sbjct: 443 RSGFALYEDMIKM-GYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNS 501

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LI+ +C++ R      V   +      PDV TFT++++V                     
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG 561

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PDA+ Y T+ID  CK        +LF  M+   +  ++     VI      +   +A 
Sbjct: 562 LEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDAS 621

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F  +++  ++P++VT+N ++   C   ++DEA  + +L+      P+  T   L+   
Sbjct: 622 KFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 681

Query: 236 C 236
           C
Sbjct: 682 C 682


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A CIF+ M   H  P  ++ +N ++  L K +       L   +  +G+ P + T + LI
Sbjct: 388 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + +   G++   F VL  + +     DV++F S++K  CK                    
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 506

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN+IID   + G  ++A  L  KMK+  V  ++VTY  +++G C ++  +EA+ L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +QG++P+VV++N I+   C  G  D+A  LL  M ++G+RP   TY+TL+     
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALAS 626

Query: 238 TGRVNHAKELFVSM 251
            GRV+  + L+  M
Sbjct: 627 AGRVHDMECLYQQM 640



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M   H   P   +++I+   L +     T+LSLF      G+    YT SI
Sbjct: 281 DETRVLMDEMAS-HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 339

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+N  CK G+V+    VL  ++ +   P  V + +LI                     + 
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD ITYN +I+GLCK   V KA++L ++M+   V P+V T+ ++I  +  A    +  
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M  +G++ +V++F  ++   CKNGK+ EA ++LD MI   V P+A  YN+++D +
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G    A  L   M++ G
Sbjct: 520 IESGDTEQAFLLVEKMKNSG 539



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 12/216 (5%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +SS N++L  L     +  V + F  L + G  PD +  + ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + R+ RS   P             PDA +YN +I GL + G    A ++F +M D  V P
Sbjct: 180 VRRMGRSEGAP------------PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVP 227

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY ++I G     D     RL  +M+  G +PN+VT+NV++  LC+ G+MDE   L+
Sbjct: 228 NWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLM 287

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           D M  H + PD FTY+ L DG   TG       LF 
Sbjct: 288 DEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFA 323



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           AL +   M R   +PPP + S+N+++  L ++      L +F  +   G+ P+  T++ +
Sbjct: 176 ALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTM 235

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K G +  GF +  ++L     P            KP+ +TYN ++ GLC+ G +D
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHD--GP------------KPNIVTYNVLLSGLCRAGRMD 281

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           + + L  +M   ++ P+  TY+ +  G     +      LF E + +GV     T ++++
Sbjct: 282 ETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LCK+GK+ +A  +L++++  G+ P    YNTL++G+C    +  A  +F  M+S
Sbjct: 342 NGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS 397



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 105/235 (44%), Gaps = 23/235 (9%)

Query: 24  DYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D ++ M  S   P V +FN ++         +   ++   +   G+  D+ +   ++  F
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK G++     +L  ++     P+   + S+I                            
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 544

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYN ++ GLC+   +D+A+EL   ++++ ++P+VV+Y ++I   C   D ++A  L  E
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           M   G++P + T++ ++  L   G++ +   L   M+   V P +  Y  ++D +
Sbjct: 605 MNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 97/210 (46%), Gaps = 21/210 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V SF  ++    KN      +++   +    + P+   ++ +I+ + + G     F+++ 
Sbjct: 474 VISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVE 533

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
           ++  S  +  +VT+  L+K +C+                    PD ++YNTII   C +G
Sbjct: 534 KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKG 593

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             DKA EL  +M    ++P + TY +++     A   ++ + L+ +M+ + V+P+   + 
Sbjct: 594 DTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYG 653

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +++D   +     + +SL   M + G+  D
Sbjct: 654 IMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 21/238 (8%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FNI++    K+       S+F  +   GL P + +++ L+N + ++G ++ GF +   +L
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 99  RSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVD 137
            S   PDV T++ LI  +CK                    P+ +T+ T+IDG CK G VD
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A E++ +M  +++ P+++TY ++I G C   D  +A  L  EM  +G++ + +T+  ++
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 323 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 208 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEI 267

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  K D ITY T+IDG CK
Sbjct: 268 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCK 327

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P+  T
Sbjct: 328 EGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXT 387

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 388 YTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    +    L   + ++G+
Sbjct: 153 DGDIRI-----AQSVFDAIAKWGLRPSVVS-YNTLMNGYIRLGDLNEGFRLKSAMLASGV 206

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAME 266

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A +L  +M  K +K + +TYT++I G C
Sbjct: 267 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCC 326

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A      M+ + ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 327 KEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTX 386

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 387 TYTMIINEFCKKGDVWKGSKLLKDMQRNG 415



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V      +   G        +IL++ FCK G
Sbjct: 95  LTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDG 154

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 155 DIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYS 214

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 215 VLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 274

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++ D  TY TL+DG C  G ++ A
Sbjct: 275 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAA 334

Query: 245 KE 246
            E
Sbjct: 335 FE 336


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ + + ML+   S   V+ +N ++     + +  + L +   +   G  PD ++++
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVT-YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            LI  FCK+ ++   F +   ++     P+ VT+T+LI                      
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+P+  TYN +I GL KQ     A+EL   M ++ + PNVVTYT++I G C     + A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F +M++QG  PN++T++ ++  L + GK++EA +L   + +HG+ PD  TY  +++ 
Sbjct: 620 LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA 679

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           + ++G+V HA      M   GC
Sbjct: 680 YIMSGKVEHAFNFLGRMIKAGC 701



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 56/258 (21%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L  L++      V+  + R+ S G+ P+L  ++ +IN  CK G V+    ++ ++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             S  +PD  T+TS+I                     + C+P+ +TY+T+I+GLC  G V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 137 DK-----------------------------------AKELFLKMKDKNVKPNVVTYTSV 161
           ++                                   A  LF+ MK+K  +PNV TYT++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I G C +     A  LF  M   GV PN VT+N +++ L +N ++  A  +L+LM ++G 
Sbjct: 362 ISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 222 RPDAFTYNTLLDGFCLTG 239
            P+  TYN ++ G+C+ G
Sbjct: 422 SPNIVTYNEMIKGYCILG 439



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L  +      + LF R++  G+FP+  T++ LIN   +  R+ + FVV
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + R+               C P+ +TYN +I G C  G   KA  +   M  +    
Sbjct: 413 LNLMGRNG--------------CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+VTY ++I+G+C + +   A R+   M D G +P+  ++  ++   CK  KM+ A  L 
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  G+ P+  TY  L+DG+C   +++ A  L   M+  GC
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 22/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I D M R     P   S+  ++    K    ++   LF  +   GL P+  T++ LI
Sbjct: 479 ALRILDLM-RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
           + +CK  ++     +L  + RS   P+V T+  LI             ++CK        
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY  +IDGLCK G    A E+F KM ++   PN++TY+S+IR         EA+ L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F E+   G+ P+ +T+  +++    +GK++ A + L  MI+ G +P  +TY  L+ G 
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 14/201 (6%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           +S    L+ +GL   L+ +S L+    ++G  +    V+ R  R            L + 
Sbjct: 165 MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTA---AVMDRYHRM-----------LSEG 210

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + YN +I+ LCK G V  A+ +  K+ +  + P+  TYTS+I G C  +D + A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M  +G +PN VT++ +++ LC +G+++EA  L+  MI HG+ P A T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G    A  LFV M++ GC
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGC 351



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 49/270 (18%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L K  ++     L K +   G+FP++ T++ +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             +++     P+++T++SLI+                        PD ITY  +I+    
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-----------------------FCYAN 169
            G V+ A     +M     +P + TY  +I+G                       F Y  
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 170 DWNEAKRLF---IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              +A  +    +  +D G+  +V   N ++  L   G+  EA+ LL  MI  G+ PD  
Sbjct: 743 TDQDAVSVMSAKLAELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE 800

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            YN+LL        V+ A  +F  M + GC
Sbjct: 801 AYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M+      P + +++ ++  L +    +   +LF  L   GL PD  T+  +I
Sbjct: 619 ALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL------CK 132
             +   G+V H F  LGR++++   P + T+  LIK  K + +  +  +  L      C 
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS 737

Query: 133 QGF----VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G+     D    +  K+ + +   +V    +++     A  W EA  L   M+ QG+ P
Sbjct: 738 FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCP 797

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   +N ++  L +   +D A  +   M   G       Y  L+   C   R   A+  F
Sbjct: 798 DQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITF 857

Query: 249 VSM 251
            +M
Sbjct: 858 ENM 860



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L  L + ++ D  + +FK +++ G    L  +  LI   C++ R     + 
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +              L++   PD +    +IDGL + G+ D   E    M+ +   P
Sbjct: 857 FENM--------------LMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMP 902

Query: 154 NVVTYTSVIR 163
           +   YT + R
Sbjct: 903 SFHIYTILAR 912



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   YN+++  L +   VD A  +F  M  +  + ++  Y  +I   C  +   EA+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           F  M+ +   P+ V   V++D L ++G  D     L +M      P    Y  L
Sbjct: 857 FENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K K       LF+ + + G FP++ T++ LI+ +CK G +     +
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 94  LGRILRSCFTPDVVTFTSLIK--VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
             R+      PDV  +  +      KP+ +TY  ++DGLCK   V  A++L   M     
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +PN + Y ++I GFC A   +EA+ +F +M+++G  PNV T++ ++D L K+ ++D    
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L  M+++   P+   Y  ++DG     + + A +L + ME  GC
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC 781



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 54/268 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         L + +   G  P+   +  LI+ FCK  ++     V
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++   + P+V T++SLI                       C P+ + Y  +IDGL K
Sbjct: 703 FHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A +L L M++K  KPNVVTYT++I GF  A   ++   LF EM  +G  PN VT
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVT 822

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQ---------------------------------H 219
           + V+++  C  G +DEA +LL+ M Q                                 +
Sbjct: 823 YTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKN 882

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           G  P    Y  L+D F   GR+  A EL
Sbjct: 883 GSAPTILLYKVLIDNFVKAGRLEVALEL 910



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     ++    +   +   G  PD  T+S +I   C   RV + F +   +  +   P
Sbjct: 463 CLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVP 522

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           DV T+T LI              D   K G + +A     +M     +P VVTYT++I  
Sbjct: 523 DVYTYTILI--------------DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHA 568

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-------- 216
           +  A   + A  LF  M+ +G  PNV+T+  ++D  CK+G +++A  +   M        
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 217 ------IQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                 I++ V  +P+  TY  L+DG C   +V  A++L  +M   GC
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 29/246 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV------ 87
           P  + FN ++    K+  +     L K++      P    ++ILI   C  G +      
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 88  -----------SHGFVVLGRILRSCFTPDVVTFTSLIKVCK-----------PDAITYNT 125
                      S G  VL ++    F   +  F    K  K           PD  TY+ 
Sbjct: 436 ELAEKAYNEMLSAG-TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSE 494

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I  LC    V+ A  LF +MK   V P+V TYT +I  F  A    +A     EM+  G
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P VVT+  ++    K  K+  A+ L +LMI  G  P+  TY  L+DG+C +G +  A 
Sbjct: 555 CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614

Query: 246 ELFVSM 251
           +++  M
Sbjct: 615 QIYARM 620



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 31/263 (11%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           D++ RM  +   P V ++ I+L GCL K K       +   + + G +P     + L++ 
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCGCLNK-KQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----PDAIT-------YNTIID 128
           +CK    S+ + +L ++ +    P  V +  LI  +C     P  +T       YN ++ 
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447

Query: 129 G---------------LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                           LC  G  +KA ++  +M      P+  TY+ VI   C A+    
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVEN 507

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  LF EM   GV P+V T+ +++D   K G + +A + LD M++ G  P   TY TL+ 
Sbjct: 508 AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIH 567

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            +    +V+ A ELF  M + GC
Sbjct: 568 AYLKAKKVSVANELFELMIAKGC 590



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 17/208 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++    +    DT   + + ++  GL  D +T        CK+G+      +
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL 298

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + +        D V          P+ I YN +I GLC+  F ++A +   +M+  +  P
Sbjct: 299 IEK-------EDFV----------PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIP 341

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TY  ++ G          KR+   M+ +G  P+   FN ++   CK+     A  LL
Sbjct: 342 NVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLL 401

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             M +   +P    YN L+   C  G +
Sbjct: 402 KKMEKCECKPGYVVYNILIGSICSGGEL 429



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 25/216 (11%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+      P V ++  M+    K    D  L LF+ + S G  P+  T+++LIN  C  G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK-------------------PDAITYNTI 126
            +   + +L  + ++ +   V ++  +I+  K                   P  + Y  +
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVL 894

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNV----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           ID   K G ++ A EL  ++   ++    K N+  YTS+I  F YA+  + A  LF +M+
Sbjct: 895 IDNFVKAGRLEVALELHKEVISASMSMTAKKNL--YTSLIYSFSYASKIDHAFELFYDMI 952

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             GV P++ TF  ++  L +  + +EA  L D + Q
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
           ++LI   C+ G  +     LGR+    + P  +T+ +L++V                   
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                D  T       LCK G   K +E    ++ ++  PN + Y  +I G C A+ + E
Sbjct: 270 LGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEE 326

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A      M      PNV T+ +++       ++     +L +MI  G  P    +N+L+ 
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVH 386

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            +C +   ++A +L   ME   C
Sbjct: 387 AYCKSDDFSYAYKLLKKMEKCEC 409


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 25/225 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTH 74
            +A  +FD +LR     P V S+NI+L  L         L L   +   G    PD+ ++
Sbjct: 34  EDARHVFDELLRR--GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           S +IN F K G        L ++L    +P+VVT              YN+II  LCK  
Sbjct: 92  STVINGFFKEGD-------LDKMLDQRISPNVVT--------------YNSIIAALCKAQ 130

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VDKA E+   M    V P+ +TY S++ GFC +    EA     +M   GV+P+VVT+N
Sbjct: 131 TVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYN 190

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
            +MD LCKNG+  EA  + D M + G++PD  TY TLL G+   G
Sbjct: 191 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKG 235



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 22/233 (9%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ +F   +R     P V ++N ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 167 PKEAI-VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            L+  +   G +     +L  ++R+   P+   F+ L+                     +
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+A+TY T+ID LCK G V+ A   F +M D+ ++P+ + Y S+I   C  + W +A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + LF+EM+D+G+  + + FN I+D  CK G++ E+  L DLM++ GV+PD  T
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
            D ML    SP  V ++N ++  L K +  D  + +   +  +G+ PD  T++ +++ FC
Sbjct: 104 LDKMLDQRISPN-VVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAI 121
             G+     V L ++      PDVVT+ SL+                     +  KPD  
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY T++ G   +G + +   L   M    + PN   ++ ++  +       EA  +F +M
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             QG+ PN VT+  ++D LCK+G++++A    + MI  G+RPD+  YN+L+   C+  + 
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342

Query: 242 NHAKELFVSMESMG 255
             A+ELF+ M   G
Sbjct: 343 EKAEELFLEMLDRG 356



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           +F  L   G+ PD+++++IL+N  C   R      +L  +                  C 
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGD------------CP 85

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ++Y+T+I+G  K+G +DK       M D+ + PNVVTY S+I   C A   ++A  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  GV P+ +T+N I+   C +G+  EA   L  M   GV PD  TYN+L+D  C 
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 238 TGRVNHAKELFVSMESMG 255
            GR   A+++F SM   G
Sbjct: 199 NGRCTEARKIFDSMTKRG 216


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ + + ML+   S   V+ +N ++     + +  + L +   +   G  PD ++++
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVT-YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            LI  FCK+ ++   F +   ++     P+ VT+T+LI                      
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+P+  TYN +I GL KQ     A+EL   M ++ + PNVVTYT++I G C     + A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F +M++QG  PN++T++ ++  L + GK++EA +L   + +HG+ PD  TY  +++ 
Sbjct: 620 LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA 679

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           + ++G+V HA      M   GC
Sbjct: 680 YIMSGKVEHAFNFLGRMIKAGC 701



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 56/258 (21%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L  L++      V+  + R+ S G+ P+L  ++ +IN  CK G V+    ++ ++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             S  +PD  T+TS+I                     + C+P+ +TY+T+I+GLC  G V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 137 DK-----------------------------------AKELFLKMKDKNVKPNVVTYTSV 161
           ++                                   A  LF+ MK+K  +PNV TYT++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I G C +     A  LF  M   GV PN VT+N +++ L +N ++  A  +L+LM ++G 
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 222 RPDAFTYNTLLDGFCLTG 239
            P+  TYN ++ G+C+ G
Sbjct: 422 SPNIVTYNEMIKGYCILG 439



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L  +      + LF R++  G+FP+  T++ LIN   +  R+ + FVV
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + R+               C P+ +TYN +I G C  G   KA  +   M  +    
Sbjct: 413 LNLMGRNG--------------CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+VTY ++I+G+C + +   A R+   M D G +P+  ++  ++   CK  KM+ A  L 
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  G+ P+  TY  L+DG+C   +++ A  L   M+  GC
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 22/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I D M R     P   S+  ++    K    ++   LF  +   GL P+  T++ LI
Sbjct: 479 ALRILDLM-RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
           + +CK  ++     +L  + RS   P+V T+  LI             ++CK        
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY  +IDGLCK G    A E+F KM ++   PN++TY+S+IR         EA+ L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F E+   G+ P+ +T+  +++    +GK++ A + L  MI+ G +P  +TY  L+ G 
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 14/201 (6%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           +S    L+ +GL   L+ +S L+    ++G  +    V+ R  R            L + 
Sbjct: 165 MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTA---AVMDRYHRM-----------LSEG 210

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + YN +I+ LCK G V  A+ +  K+ +  + P+  TYTS+I G C  +D + A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M  +G +PN VT++ +++ LC +G+++EA  L+  MI HG+ P A T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G    A  LFV M++ GC
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGC 351



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 49/270 (18%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L K  ++     L K +   G+FP++ T++ +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             +++     P+++T++SLI+                        PD ITY  +I+    
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG-----------------------FCYAN 169
            G V+ A     +M     +P + TY  +I+G                       F Y  
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 170 DWNEAKRLF---IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              +A  +    +  +D G+  +V   N ++  L   G+  EA+ LL  MI  G+ PD  
Sbjct: 743 TDQDAVSVMSAKLAELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE 800

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            YN+LL        V+ A  +F  M + GC
Sbjct: 801 AYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M+      P + +++ ++  L +    +   +LF  L   GL PD  T+  +I
Sbjct: 619 ALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL------CK 132
             +   G+V H F  LGR++++   P + T+  LIK  K + +  +  +  L      C 
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS 737

Query: 133 QGF----VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G+     D    +  K+ + +   +V    +++     A  W EA  L   M+ QG+ P
Sbjct: 738 FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCP 797

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   +N ++  L +   +D A  +   M   G       Y  L+   C   R   A+  F
Sbjct: 798 DQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITF 857

Query: 249 VSM 251
            +M
Sbjct: 858 ENM 860



 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L  L + ++ D  + +FK +++ G    L  +  LI   C++ R     + 
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +              L++   PD +    +IDGL + G+ D   E    M+ +   P
Sbjct: 857 FENM--------------LMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMP 902

Query: 154 NVVTYTSVIR 163
           +   YT + R
Sbjct: 903 SFHIYTILAR 912



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   YN+++  L +   VD A  +F  M  +  + ++  Y  +I   C  +   EA+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           F  M+ +   P+ V   V++D L ++G  D     L +M      P    Y  L
Sbjct: 857 FENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 33/267 (12%)

Query: 16  PNEALCIFDYM--LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  +L +F  +  LR+HP+     +FN+++            L+    +   GL PD  T
Sbjct: 189 PQASLDVFRSLIELRLHPN---HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVT 245

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           ++ L+N  C+ G +     +L R+ R    P   T+ +L+                    
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMT 305

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDW 171
               +PD  TYN +  GLC+ G VD+A  L  +M+  +   P+VVTY +++   C+   W
Sbjct: 306 AYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDA-CF--KW 362

Query: 172 ---NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              ++A RL  EM D+GV+P +VT N+++  LCK GK++EA   L+ + + G+ PD  TY
Sbjct: 363 RCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITY 422

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           NTL+D +C  G V  A  L   M   G
Sbjct: 423 NTLIDAYCKAGNVAKAFTLMDEMVGKG 449



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 56/295 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M R+  + P V ++N ++    K +     L L + +   G+ P L TH+I
Sbjct: 330 DEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNI 389

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++   CK G++      L +I      PDV+T+ +LI                     K 
Sbjct: 390 VVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449

Query: 116 CKPDAITYNTIIDGLCK----------------QGFV-------------------DKAK 140
            K D  T NT++  LCK                +GFV                   + A 
Sbjct: 450 LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPAL 509

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L+ +M ++ + P++ TY ++I+G C      EA     E++++G+ P+  T+N+I+   
Sbjct: 510 RLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAY 569

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G ++ A    + M+++  +PD  T NTL++G CL G+++ A +LF S    G
Sbjct: 570 CKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L    +        +L  R+   G+ P   T++ L++ F ++G +     V
Sbjct: 241 PDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKV 300

Query: 94  LGRILRSCFTPDVVTFTSL-IKVCK---------------------PDAITYNTIIDGLC 131
           +  +    F PD+ T+  L + +C+                     PD +TYNT++D   
Sbjct: 301 VESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACF 360

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K      A  L  +M+DK VKP +VT+  V++  C      EA     ++ ++G+ P+V+
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++D  CK G + +A +L+D M+  G++ D FT NT+L   C   R   A+EL  S 
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 252 ESMG 255
              G
Sbjct: 481 PQRG 484



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + NI++  L K    +  L   +++   GL PD+ T++ LI+ +CK G V+  F +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 94  LGRIL-----------------------------------RSCFTPDVVTFTSLI----- 113
           +  ++                                   +  F PD V++ +++     
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           +   P   TYNT+I GLC+   + +A +   ++ +K + P+  T
Sbjct: 502 EYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETT 561

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I  +C   D   A R   +M++   +P+VVT N +M+ LC +GK+D+A  L +  +
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G + D  TYNTL+   C  G V+ A   F  ME  G
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKG 659



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 55/278 (19%)

Query: 16  PNEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  AL ++D M+  ++ PS   +S++N ++  L + +     +     L   GL PD  T
Sbjct: 505 PEPALRLWDQMIERKLIPS---ISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETT 561

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           ++I+I+ +CK G + + F    +++ + F PDVVT       C       NT+++GLC  
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVT-------C-------NTLMNGLCLH 607

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G +DKA +LF    +K  K +V+TY ++I+  C   D + A   F +M  +G+QP+  T+
Sbjct: 608 GKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667

Query: 194 NVIMDELCKNGKMDEASSLLDLMI-------------------------QHGVRPDA--- 225
           NV++  L + G+ +EA ++L  +                          +H  +P+A   
Sbjct: 668 NVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESS 727

Query: 226 --------FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                    TY   L+G C  G++  AK +   M   G
Sbjct: 728 EKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++    K  + +  L L+ ++    L P + T++ LI   C+M R+      
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     PD                TYN II   CK+G ++ A     KM + + KP
Sbjct: 547 LNELVEKGLVPD--------------ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKP 592

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVT  +++ G C     ++A +LF   +++G + +V+T+N ++  +CK G +D A    
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFF 652

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M   G++PDAFTYN +L      GR   A  +   +   G
Sbjct: 653 DDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 27/242 (11%)

Query: 18  EALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           EA  +   M R  + P+ P   ++N ++   A+         + + + + G  PDL T++
Sbjct: 261 EARALLARMKRDGIAPTQP---TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYN 317

Query: 76  ILINCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLIKVC------------------ 116
           +L    C+ G+V   F +   + R S   PDVVT+ +L+  C                  
Sbjct: 318 VLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRD 377

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              KP  +T+N ++  LCK+G +++A     K+ ++ + P+V+TY ++I  +C A +  +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  L  EM+ +G++ +  T N ++  LCK  + ++A  LL    Q G  PD  +Y T++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 234 GF 235
            +
Sbjct: 498 AY 499


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +    +V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 DIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A  LF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A +L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI   CK  R
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L    +PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C    + +A+++  EM+  G
Sbjct: 317 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK G +   S LL  M + G  P
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 414



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 22/197 (11%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +FD ML     P  V+ F  ++    KN+  D  + ++K++ S  L PDL T++ 
Sbjct: 223 DDANGLFDEMLDKGLVPNGVT-FTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LI   CK G +     ++  +      PD +T+T+LI  C                    
Sbjct: 282 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEN 341

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            + D + Y  +I GLC++G    A+++  +M    +KP+  TYT +I  FC   D     
Sbjct: 342 IRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGS 401

Query: 176 RLFIEMMDQGVQPNVVT 192
           +L  EM   G  P+VV+
Sbjct: 402 KLLKEMQRDGHVPSVVS 418


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++   +  L K       + +F+ +   GL P+    + LI+  CK G V+ G  +
Sbjct: 182 PDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLEL 241

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
              +       D+V + +L+   C                    KPD +TY T+IDG CK
Sbjct: 242 RWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCK 301

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E+  +M D+ V  + VTYT++I G   A    +A+R+  EMM+ G+QP+  T
Sbjct: 302 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 361

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CKNG +      L  M   G  P   TYN +++GFC  G++ +A  L  +M 
Sbjct: 362 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAML 421

Query: 253 SMG 255
           ++G
Sbjct: 422 NIG 424



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP    FN+++  + ++    +  ++F  +   G+ P + T + L++  CK   +++   
Sbjct: 111 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANA 170

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           + G + ++   PDV T+ + I+ +CK                    P+ +   T+ID  C
Sbjct: 171 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 230

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G V    EL  +M  + VK ++V Y +++ GFC   D   A  +  EM   G++P+ V
Sbjct: 231 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 290

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D A  +   M   GV  D  TY  L+ G    GR   A+ +   M
Sbjct: 291 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 350

Query: 252 ESMG 255
              G
Sbjct: 351 MEAG 354



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           + +  L   G+ P+    ++L+    + G+++    V   +LR    P VVTF       
Sbjct: 100 AFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTF------- 152

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
                  NT++ G+CK   ++ A  L   M    + P+V TY + I+G C      +A  
Sbjct: 153 -------NTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 205

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM ++G+ PN V    ++D  CK G +     L   M   GV+ D   YN L++GFC
Sbjct: 206 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFC 265

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  A ++   M   G
Sbjct: 266 RVRDMKAANDIVEEMRKDG 284



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A   +L + D  V P    +  ++R    +     A+ +F EM+ +GVQP VVTFN 
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +M  +CK   ++ A++L  LM + G+ PD +TY   + G C TGR+  A E+F  M
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 210



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++ +++    KN    T     K + + G  P + T+++++N FC +G++ +  ++
Sbjct: 357 PDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADML 416

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L              I VC P+ ITYN ++DG CK G V   +EL      K +  
Sbjct: 417 LNAMLN-------------IGVC-PNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVS 459

Query: 154 NVVTYTSVIRGF 165
           +   YTS+I  F
Sbjct: 460 DFGVYTSLINEF 471


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 133/293 (45%), Gaps = 66/293 (22%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M       P + ++N+++    K        SL K +   G  P+++T+SI+
Sbjct: 145 EAHALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 200

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           INC+CK+ +V   + V  +++ S   P+ VTF +LI                       C
Sbjct: 201 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 260

Query: 117 KPDAITYNTIIDGLCK-------------------------------QGFVDKAKE---L 142
           K   +TYNT+ID LCK                               QGF ++A +   L
Sbjct: 261 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRL 320

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
              M  +  KP+V+TY  +I G C AN   +A+RLF  M      PNV TFN ++  LC 
Sbjct: 321 LCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGLCA 377

Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             K++EA ++LD M      PD  T+NT++  FC  G ++ A+E+   M   G
Sbjct: 378 QKKVEEARNILDRM----TAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHG 426



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 21/242 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
            P   ++N+++    K       +S+F  + S+GL P+  T + L+   C++G++S    
Sbjct: 22  APNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALK 81

Query: 93  VLGRILRSCFTPDVVTFTSLIKV------------------CKPDAITYNTIIDGLCKQG 134
           +   +    F P   +   L++                    +PD  +Y+ ++  L   G
Sbjct: 82  LFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDSG 141

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            + +A  LF  M      P+++TY  ++ G+C      EA+ L  E++  G +PNV T++
Sbjct: 142 RMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 198

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
           +I++  CK  K++EA  +   MI+    P+A T+NTL+ GFC  G +  A +LF  ME +
Sbjct: 199 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 258

Query: 255 GC 256
           GC
Sbjct: 259 GC 260



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           + AL +F  M +  P  P  +S NI+L G     +     +  FK + ++G+ PDL ++ 
Sbjct: 77  SSALKLFREM-QAGPFLPTSASHNILLRGFFMAGR----AIEFFKEMKASGVEPDLESYH 131

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           IL++     GR++    +   +                  C PD +TYN ++DG CK G 
Sbjct: 132 ILLSALSDSGRMAEAHALFSAM-----------------TCSPDIMTYNVLMDGYCKIGQ 174

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
             +A+ L  ++     +PNV TY+ +I  +C  +   EA  +F++M++    PN VTFN 
Sbjct: 175 TYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNT 234

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-GRVNHAKELFVSMESM 254
           ++   CK G +++A  L   M + G +    TYNTL+D  C   G V  A +LF  +E  
Sbjct: 235 LIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGA 294

Query: 255 G 255
           G
Sbjct: 295 G 295



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 28/237 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M+  +  P  V+ FN ++    K    +  + LF  +   G    + T++ L
Sbjct: 212 EAWEVFMKMIESNCVPNAVT-FNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTL 270

Query: 78  INCFCK-MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------CK 117
           I+  CK  G V     +  ++  +  TP +VT+ SLI+                    CK
Sbjct: 271 IDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCK 330

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ITYN +I GLC    V+ A+ LF  M      PNV T+  +IRG C      EA+ +
Sbjct: 331 PDVITYNCLISGLCSANRVEDAQRLFNGMA---CAPNVTTFNFLIRGLCAQKKVEEARNI 387

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
               +D+   P++ TFN I+   CK G M +A  ++  M++HG  P+ +T   L  G
Sbjct: 388 ----LDRMTAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHG 440



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A  LF ++      PN  TY  +IRGFC     ++A  +F +M   G+ PN  T N +
Sbjct: 7   DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 66

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  LC+ G+M  A  L   M      P + ++N LL GF + GR   A E F  M++ G
Sbjct: 67  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASG 122



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%)

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A   ++A RLF E++     PN  T+NV++   CK G+M +A S+   M   G+ P+A T
Sbjct: 3   ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 62

Query: 228 YNTLLDGFCLTGRVNHAKELFVSMES 253
            NTLL G C  G+++ A +LF  M++
Sbjct: 63  MNTLLLGLCEIGQMSSALKLFREMQA 88



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K D+A  L   ++     P+A TYN L+ GFC  G+++ A  +F  M+S G
Sbjct: 5   KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 55


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 29/245 (11%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF---- 91
           V+++N+ +  L          +L + +   GL PD +T++ILIN +CK G+         
Sbjct: 254 VATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFE 313

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
           V++G+ +R+     VVT+TSLI                     +  +PD   YN +I+  
Sbjct: 314 VMVGKGIRAT----VVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSH 369

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C  G +D+A E+  +M+ K + P+ VTY +++RG C     +EA+ L  EM  +G+QP++
Sbjct: 370 CTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDL 429

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V++N ++      G + +A  + D M+  G  P   TYN ++ G CL G+   A++L   
Sbjct: 430 VSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKE 489

Query: 251 MESMG 255
           M   G
Sbjct: 490 MVGNG 494



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 14/239 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  +FD ML      P    +N ++G      + +  L     +   G+   + T+++
Sbjct: 200 EDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNL 259

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            ++     GR +    ++  +                K   PDA TYN +I+G CK+G  
Sbjct: 260 FVHTLFMEGRAAEAHALVEEMGE--------------KGLAPDAFTYNILINGYCKEGKE 305

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            KA ++F  M  K ++  VVTYTS+I          E  RLF + + +G++P++  +N +
Sbjct: 306 KKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNAL 365

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  C  G MD A  ++  M +  + PD  TYNTL+ G CL GR++ A+ L   M   G
Sbjct: 366 INSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRG 424



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 14/178 (7%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF      G+ PDL+ ++ LIN  C  G +   F ++G + +   TPD VT         
Sbjct: 346 LFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVT--------- 396

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                YNT++ GLC  G +D+A+ L  +M  + ++P++V+Y ++I G+    D  +A ++
Sbjct: 397 -----YNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKV 451

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             EMM +G  P ++T+N ++  LC NG+  +A  L+  M+ +G+ PD  TY +L++G 
Sbjct: 452 RDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 60/271 (22%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +++L      + + T LSL+ RL S  L  P    H +L +        +  FV+   I 
Sbjct: 54  HLLLTASVAGRPHTTSLSLYSRLKSLSLPIPTASLHPLLSSL-----PPAPAFVLFADIF 108

Query: 99  RSCFTPDVVTFTSLIK-----------------VCKPDAITYNTIIDGLCKQGFVDKAKE 141
           R        TF  +++                 +  P+A+TYNT+I G C +G V    E
Sbjct: 109 RLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPSPNAVTYNTVIAGFCARGRVQAGIE 168

Query: 142 LFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDE 199
           +  +M+++  + P+  TY +VI G+C      +A ++F EM+ +G V+PN V +N ++  
Sbjct: 169 IMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGG 228

Query: 200 LCKNGKMD-----------------------------------EASSLLDLMIQHGVRPD 224
            C  G ++                                   EA +L++ M + G+ PD
Sbjct: 229 YCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPD 288

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           AFTYN L++G+C  G+   A ++F  M   G
Sbjct: 289 AFTYNILINGYCKEGKEKKAMKMFEVMVGKG 319



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++         D    +   +    + PD  T++ L+   C +GR+     +
Sbjct: 357 PDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGL 416

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  + +    PD+V+              YNT+I G   +G +  A ++  +M  K   P
Sbjct: 417 IEEMTKRGIQPDLVS--------------YNTLISGYSMKGDIKDAVKVRDEMMGKGFNP 462

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            ++TY ++I+G C      +A+ L  EM+  G+ P+  T+  +++ L
Sbjct: 463 TLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  VS FN ++    K    D    L   + ++G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPSVVS-FNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L +   P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++  M  +++ P+++TY ++I G C   D  +A+ L  EM  +G++P+ +T+  ++D
Sbjct: 260 AMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T  SL    +P  +++NT+++G  K G +D+   L   
Sbjct: 151 EI--------RLAQSVF--DAITKWSL----RPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M+   V+P+V TY+ +I G C  +  ++A  LF EM+D G+ PN VTF  ++D  CKNG+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +  LM+   + PD  TYNTL+ G C  G +  A++L   M   G
Sbjct: 257 VDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L    +PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 22/237 (9%)

Query: 41  IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
           +M+   ++    +     FK+    GL P+L   S LIN  CK+G +   F +L  ++R 
Sbjct: 268 LMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRK 327

Query: 101 CFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLCKQGFVDK 138
            + P+V T T+LI  +CK                     P+  TY  +I+G CK+  +++
Sbjct: 328 GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNR 387

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A+ L ++MK++ + PN  TYT +I G C A ++  A  L   M  +G  PN+ T+N I+D
Sbjct: 388 AEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIID 447

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            LCK G+  EA  LL   ++ G+  D  TY  L+  FC       A  +F  M  +G
Sbjct: 448 GLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVG 504



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 14/239 (5%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +F  ++R     P V ++  M+    K +  +    L  R+   GL P+  T++ L
Sbjct: 351 KAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCL 410

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+  CK G     + ++  + +  FTP++               TYN IIDGLCK+G   
Sbjct: 411 IDGHCKAGNFGRAYELMDLMGKEGFTPNI--------------FTYNAIIDGLCKKGRFP 456

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A +L  +     +  + VTYT +I  FC   D  +A  +F  M   G+QP++ T+NV++
Sbjct: 457 EAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLI 516

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              C+  K++E+  L +  +  G+ P   TY +++ G+C  G ++ A + F  M   GC
Sbjct: 517 ATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGC 575



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 21/227 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++  ++    K  ++     L   +   G  P+++T++ +I+  CK GR    + +
Sbjct: 402 PNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKL 461

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           L R L+S    D VT+T LI + C+                    PD  TYN +I   C+
Sbjct: 462 LRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR 521

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           Q  V+++++LF +     + P   TYTS+I G+C     + A + F +M D G +P+ +T
Sbjct: 522 QKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSIT 581

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           +  ++  LC   K+DEA  L + MI +G+ P   T  TL   +C  G
Sbjct: 582 YGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQG 628



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 26/237 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N ++  L K   +     L +R   +GL  D  T++ILI+ FC+         +
Sbjct: 437 PNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAI 496

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
             R+ +    PD+ T+  LI   C+                    P   TY ++I G C+
Sbjct: 497 FSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCR 556

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +  A + F KM+D   KP+ +TY ++I G C  +  +EA +L+  M+D G+ P  VT
Sbjct: 557 DGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVT 616

Query: 193 FNVIMDELCKNGKMDEASSLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
              +  E CK G    A  +L+ L  +  +R    T NTL+   C   +V  A   F
Sbjct: 617 RVTLAYEYCKQGDSATAMIILERLEKKLWIR----TVNTLIRKLCSEKKVGVAALFF 669



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 28/264 (10%)

Query: 13  TITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDT--VLSLFKRLNSTGLFPD 70
           ++T  + + +   + +   S   +S FN ++G  +K +H+    ++     LN+  L   
Sbjct: 99  SLTHEQVITVVASLAQEAGSVVSLSFFNWVIG-FSKFRHFMRLYIVCATTFLNNDNLDRA 157

Query: 71  LYTHSILINCFCKMGRV-----------SHGFVVLGRILRSCFTPDVVTFTSLI------ 113
                 ++  F ++G++           +HG V+  RIL   F  DV      +      
Sbjct: 158 TEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILN--FVIDVALALGFVDYAEKV 215

Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                 +   PD+ +Y  ++ G C+ G +         M ++    +  T T +I  F  
Sbjct: 216 FDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSE 275

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
               N A   F + +  G+ PN++ F+ +++ LCK G + +A  +L+ M++ G +P+ +T
Sbjct: 276 KGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYT 335

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
           +  L+DG C  G    A  LF+ +
Sbjct: 336 HTALIDGLCKKGWTEKAFRLFLKL 359



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%)

Query: 161 VIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG 220
           ++R F       EA  + IEM + G+       N ++D     G +D A  + D M+   
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 221 VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           V PD+ +Y  ++ G+C  GR++        M   G
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERG 258



 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 18/148 (12%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + +R +   P   ++  ++  L      D    L++ +   GL P   T   L   +C
Sbjct: 566 FFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYC 625

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
           K G  +   ++L R+ +  +   V                 NT+I  LC +  V  A   
Sbjct: 626 KQGDSATAMIILERLEKKLWIRTV-----------------NTLIRKLCSEKKVGVAALF 668

Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYAND 170
           F K+ DK++  + +T  +     CY ++
Sbjct: 669 FHKLLDKDLNVDRITLAAFTTA-CYESN 695


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 125/264 (47%), Gaps = 26/264 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A  +FD M  +    P   SF I++    +       L L   + S G+ P+   ++ L
Sbjct: 169 DAREVFDKM-GVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTL 227

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC--------------------- 116
           I+ FC+ GR      ++ R+      PDVVTF S I                        
Sbjct: 228 ISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEE 287

Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
               +P+  T+N +++G CK+G +++AK L   MK       + +Y   + G        
Sbjct: 288 LGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLL 347

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           EA+    EM+D+G++PN+ +FN +MD LCKNG + +A  ++ LMI  G+ PD  TY+TLL
Sbjct: 348 EAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLL 407

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
            G C TG+V  A  +   M   GC
Sbjct: 408 HGCCSTGKVLKANNILHEMMRRGC 431



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 18/229 (7%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
            +PPPV  +N++L    +    D+   L+K +   G+ P+ YT ++LI   C  GR    
Sbjct: 111 ANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDA 170

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             V  ++               +K C+P+  ++  ++ G C+ G   +A EL   M    
Sbjct: 171 REVFDKMG--------------VKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFG 216

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V+PN V Y ++I  FC      EA+RL   M + G+ P+VVTFN  +  LC  GK+ EAS
Sbjct: 217 VQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEAS 276

Query: 211 SLL-DLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +  D+ I   +   RP+  T+N +L+GFC  G +  AK L  SM+  G
Sbjct: 277 RIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNG 325



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 49/273 (17%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           I   M+R   SP   +  NI+L  L K         L +++N      D  T +I+I+  
Sbjct: 422 ILHEMMRRGCSPNTYTC-NILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGL 480

Query: 82  CKMGRVS-----------HGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL 130
           CK G++            HG   LG +  S     +V  +S  K C PD ITY+ II+GL
Sbjct: 481 CKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIG--LVDSSSNGKKCLPDLITYSIIINGL 538

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR-------------- 176
           CK G +D+A++ F++M  K++ P+ + Y + I  FC     + A R              
Sbjct: 539 CKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSL 598

Query: 177 ---------------------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
                                L  +M ++G+ PN+ T+N ++  LC+ G++ +A+SLLD 
Sbjct: 599 QTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDE 658

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           M+Q G+ P+  ++  L+  FC        KE+F
Sbjct: 659 MLQKGISPNISSFRLLIKAFCKASDFGVVKEVF 691



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 44/265 (16%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + S+NI L  L +N          K +   G+ P++Y+ + +++  CK G +S   +++G
Sbjct: 330 LESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMG 389

Query: 96  RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
            ++ S   PD VT+++L+                     + C P+  T N ++  L K+G
Sbjct: 390 LMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEG 449

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL----------------- 177
            + +A++L  KM +++   + VT   VI G C +   +EA  +                 
Sbjct: 450 RIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGN 509

Query: 178 -FIEMMDQGVQ-----PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
            FI ++D         P+++T+++I++ LCK G++DEA      M+   + PD+  Y+T 
Sbjct: 510 SFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTF 569

Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
           +  FC  G+++ A  +   ME  GC
Sbjct: 570 IHSFCKHGKISSAFRVLKDMEKRGC 594



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +++FN+ML    K    +   +L + +   G   +L +++I +    + G++    + 
Sbjct: 293 PNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLA 352

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++     P++ +F              NT++DGLCK G +  A+ +   M    + P
Sbjct: 353 LKEMVDKGIEPNIYSF--------------NTVMDGLCKNGLISDARMIMGLMISSGIGP 398

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY++++ G C      +A  +  EMM +G  PN  T N+++  L K G++ EA  LL
Sbjct: 399 DTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLL 458

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
             M +     D  T N ++DG C +G+++ A E+   M
Sbjct: 459 QKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGM 496



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 55/277 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +++I++  L K    D     F  +    L PD   +   I+ FCK G++S  F V
Sbjct: 526 PDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRV 585

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + +      + T+ SLI                     K   P+  TYN +I  LC+
Sbjct: 586 LKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCE 645

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW--------------------- 171
            G +  A  L  +M  K + PN+ ++  +I+ FC A+D+                     
Sbjct: 646 GGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEALY 705

Query: 172 -------------NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
                        +EAK LF   +D+        +N ++++LCK+  ++ AS +L  MI 
Sbjct: 706 SLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMID 765

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G R D  ++  ++DG    G+ + A EL   M  M 
Sbjct: 766 KGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDMA 802



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 86  RVSH-GFVVLGRILRSCFTPDVV-----TFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
            VSH   + L RIL      D+      +F S +    P    YN +++   ++  VD  
Sbjct: 76  EVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSF 135

Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
             L+  M    V P   T   +I G C +  + +A+ +F +M  +G +PN  +F +++  
Sbjct: 136 SWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRG 195

Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            C+ G    A  LLD M   GV+P+   YNTL+  FC  GR   A+ L   M   G
Sbjct: 196 YCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDG 251



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%)

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           P V  +N++++   +  K+D  S L   M+  GV P+ +T N L+ G C +GR   A+E+
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 248 FVSMESMGC 256
           F  M   GC
Sbjct: 174 FDKMGVKGC 182


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K  +     S+F  +   GL P + +++ L++ + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P  +T+ T+IDG C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHC 241

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++ +M  +++ P+++TY ++I G C   B  +A  L  EM  +G +P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKI 301

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 302 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 361

Query: 252 ESMG 255
            S+G
Sbjct: 362 LSVG 365



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 23/229 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P   T + LI+  CK GR
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGR 245

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L     PD++T+ +LI                     K  KPD ITY T
Sbjct: 246 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTT 305

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G +D A E   +M  +N++ + V YT++I G C      +A+++  EM+  G
Sbjct: 306 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 365

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            +P+  T+ +I++E CK G +   S LL  M + G  P   TYN L++G
Sbjct: 366 XKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S+N ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 158 PSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANEL 217

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L     P  VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 218 FDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 277

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A  L  +M  K  KP+ +TYT++I G C   D + A      M+ + ++ + V 
Sbjct: 278 KGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 337

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G +PD  TY  +++ FC  G V    +L   M+
Sbjct: 338 YTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQ 397

Query: 253 SMG 255
             G
Sbjct: 398 RDG 400



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K K++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEG 139

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +        R+ +S F  D +T   L    +P  ++YNT++ G  + G +D+   L   
Sbjct: 140 NI--------RVAQSVF--DAITKWGL----RPSVVSYNTLMSGYIRLGDLDEGFRLKSA 185

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M    V+P+V TY+ +I G C     +EA  LF EM+  G+ P  VTF  ++D  CKNG+
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGR 245

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +D A  +   M+   + PD  TYNTL+ G C  G +  A  L   M   G
Sbjct: 246 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKG 295



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 62/139 (44%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E +   ++        T   V+        +     
Sbjct: 52  RSDIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK G +  A S+ D + + G+RP   +YNTL+ G+ 
Sbjct: 112 FYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYI 171

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M + G
Sbjct: 172 RLGDLDEGFRLKSAMHASG 190


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 14/214 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +NI +  L K    D     F  L+  G  PD +T+  LI+ +   G V   F +   +L
Sbjct: 717 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R    P++VT              YN +I+GLCK   VD+A+ LF K+  K + PNVVTY
Sbjct: 777 RRGLVPNIVT--------------YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTY 822

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I G+C   + + A +L  +M+++G+ P+VVT++ +++ LCK+G ++ +  LL+ MI+
Sbjct: 823 NTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIK 882

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            GV      Y TL+ G+  +G +    +L+  M 
Sbjct: 883 AGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 129/248 (52%), Gaps = 23/248 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +FD M +     P + S N +L  L KN    T   +++++   G+ PD++  SI++
Sbjct: 175 ALYVFDNMGKC-GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMV 233

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
           N FCK G+V      + ++      P++VT+ SLI                     K   
Sbjct: 234 NAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVS 293

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKR 176
            + +TY  +I G CKQ  +D+A+++   M+++  + P+   Y  +I G+C     ++A R
Sbjct: 294 RNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVR 353

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           L  EM+  G++ N+   N +++  CK G++ EA  ++  M+   ++PD+++YNTLLDG+C
Sbjct: 354 LLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYC 413

Query: 237 LTGRVNHA 244
             G  + A
Sbjct: 414 REGHTSEA 421



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 18/232 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++  ++    K    D   S +  +   GL  ++   S +++   ++GR+    ++
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 94  LGRILRSCFTPDVVTF--------------TSLIKVCK----PDAITYNTIIDGLCKQGF 135
           + +++   F PD   F               SL + CK    P+ I YN  I GLCK G 
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VD A+  F  +  K   P+  TY ++I G+  A + +EA RL  EM+ +G+ PN+VT+N 
Sbjct: 730 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 789

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           +++ LCK+  +D A  L   + Q G+ P+  TYNTL+DG+C  G ++ A +L
Sbjct: 790 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 132/317 (41%), Gaps = 88/317 (27%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +   P  P +  +N ++  L K++    V  L   +   GL P++ T+  LI+ +CK G 
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 87  VSHGF-------------------------VVLGRILRS-----------------CFTP 104
           +   F                           LGRI  +                 CF  
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 105 DVVTFTSLIKV-------CK----PDAITYNTIIDGLCKQGFVDKAKELF---------- 143
             + + ++ K+       CK    P+ I YN  I GLCK G VD A+  F          
Sbjct: 688 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVP 747

Query: 144 ---------------------LKMKDKNVK----PNVVTYTSVIRGFCYANDWNEAKRLF 178
                                 +++D+ ++    PN+VTY ++I G C + + + A+RLF
Sbjct: 748 DNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLF 807

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            ++  +G+ PNVVT+N ++D  CK G MD A  L D MI+ G+ P   TY+ L++G C  
Sbjct: 808 HKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKH 867

Query: 239 GRVNHAKELFVSMESMG 255
           G +  + +L   M   G
Sbjct: 868 GDIERSMKLLNQMIKAG 884



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ +++    +    D  + L   +   GL  +L+  + LIN +CK G +     V
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + R++                  KPD+ +YNT++DG C++G   +A  L  KM  + ++P
Sbjct: 390 ITRMVDWNL--------------KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP 435

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            V+TY ++++G C    +++A +++  MM +GV P+ V ++ ++D L K    + AS+L 
Sbjct: 436 TVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 495

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             ++  G      T+NT++ G C  G++  A+E+F  M+ +GC
Sbjct: 496 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D ML+     P V ++N +L  L +   +D  L ++  +   G+ PD   +S 
Sbjct: 419 SEAFNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYST 477

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   KM        +   IL   FT   +TF              NT+I GLCK G +
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITF--------------NTMISGLCKMGKM 523

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+E+F KMKD    P+ +TY ++I G+C A++  +A ++   M  + + P++  +N +
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSL 583

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +  L K+ ++ E + LL  M   G+ P+  TY  L+DG+C  G ++ A   +  M   G
Sbjct: 584 ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG 642



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           F+++L    +       L +F  +   G  P L + + L+N   K G       V  +++
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
           R    PDV   +               +++  CK G VD+A     KM++  V+PN+VTY
Sbjct: 219 RVGIVPDVFMVS--------------IMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTY 264

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            S+I G+    D   AK +   M ++GV  NVVT+ +++   CK  KMDEA  +L  M +
Sbjct: 265 HSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQE 324

Query: 219 H-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
              + PD   Y  L+DG+C TG+++ A  L   M  +G
Sbjct: 325 EAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLG 362



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 54/292 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL I+  M++   +P  V  ++ +L  L K ++++   +L+K + + G      T + 
Sbjct: 454 DDALQIWHLMMKRGVAPDEVG-YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           +I+  CKMG++     +  ++     +PD +T+ +LI   CK                  
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    YN++I GL K   + +  +L  +M  + + PN+VTY ++I G+C     ++A 
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA---------- 225
             + EM + G+  N++  + ++  L + G++DEA+ L+  M+ HG  PD           
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 226 ----------------------FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                                   YN  + G C TG+V+ A+  F  +   G
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG 744



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 89/162 (54%), Gaps = 15/162 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D MLR     P + ++N ++  L K+++ D    LF +L+  GLFP++ T++ 
Sbjct: 766 DEAFRLRDEMLR-RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNT 824

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ +CK+G +   F +  +++    +P VVT+++L              I+GLCK G +
Sbjct: 825 LIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSAL--------------INGLCKHGDI 870

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +++ +L  +M    V   ++ Y ++++G+  + +  +  +L+
Sbjct: 871 ERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLY 912


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 21/222 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            +++F  + +    PD + ++ +++  C+ GR     V+L   + + F P++V + +LI 
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 114 ------------KV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                       KV        C P+  TY  +I GLCK G V++A  LF +M +  ++P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTYT++I+G C       A RL   M   G+ PN  TF+V++D LCK  K++EA   L
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFL 340

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++ GV+ +   Y +L+DG C TG+++ A EL   M S G
Sbjct: 341 GSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A+ +F  M+     P  V ++  ++       H      L   + + GL P+ +T S+
Sbjct: 264 ERAMVLFSRMVEAGLEPN-VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK  +V    + LG +++     + V +TSLI  +CK                  
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA +Y+++IDGLC+Q  + +A  +   M +K ++ + VTYT +I            K
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPK 442

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M+  G+ P++VT+ V +   C+ G+M++A S++  M+  GV P+  TYNTL+ G+
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G V+ A   F  M   G
Sbjct: 503 ANLGLVSQAFSTFEVMVGKG 522



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++         +  L +F+ ++     P++ T++ LI+  CK G+V    V+
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
             R++ +   P+VVT+T+LI+                                    +CK
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 118 PD--------------------AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            +                     + Y ++IDGLCK G +D A EL  KM  +   P+  +
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+S+I G C     ++A  +  +MM++G+Q + VT+ +I+DEL +    +    + D MI
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  TY   +  +C  GR+  A+ + V M   G
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRG 487



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+   N +L  LA+++ +  + SL  R+ +     +L T++ LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQH 94

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L +   PD   +TS +                     + C   A TY  ++ GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A  +F+ M+  +  P+   Y +++ G C A    EA+ L  E M  G +PN+V 
Sbjct: 155 AGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  C  G+M+ A  + + M  +   P+  TY  L+ G C +G+V  A  LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 253 SMG 255
             G
Sbjct: 275 EAG 277



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 24/241 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++  L K    D    L +++ S G  PD +++S LI+  C+  ++S   ++L  ++
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
                   VT+T +I                         PD +TY   +   C++G ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+ + ++M D+ V PN+VTY ++IRG+      ++A   F  M+ +G +PN  ++ V++
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
             + K    D +  +  +     ++    D   +  L+ G    G V     L   M+  
Sbjct: 535 RLVVKKSSSDNSVDIWKIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEH 594

Query: 255 G 255
           G
Sbjct: 595 G 595



 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M+    +P  V+ + + +    +    +   S+  ++   G+FP+L T++ LI  +
Sbjct: 444 IFDKMIATGINPDIVT-YTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------------K 117
             +G VS  F     ++   + P+  ++T L+++                          
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESN 562

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            D I +  +I GL ++G V +   L   MK+   +P+      +       N+  E  R
Sbjct: 563 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQEIAR 621


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 22/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A+ + + ML+   S   V+ +N ++     + +  + L +   +   G  PD ++++
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVT-YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            LI  FCK+ ++   F +   ++     P+ VT+T+LI                      
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C+P+  TYN +I GL KQ     A+EL   M ++ + PNVVTYT++I G C     + A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +F +M++QG  PN++T++ ++  L + GK++EA +L   + +HG+ PD  TY  +++ 
Sbjct: 620 LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA 679

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
           + ++G+V HA      M   GC
Sbjct: 680 YIMSGKVEHAFNFLGRMIKAGC 701



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 56/258 (21%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ +L  L++      V+  + R+ S G+ P+L  ++ +IN  CK G V+    ++ ++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 98  LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
             S  +PD  T+TS+I                     + C+P+ +TY+T+I+GLC  G V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 137 DK-----------------------------------AKELFLKMKDKNVKPNVVTYTSV 161
           ++                                   A  LF+ MK+K  +PNV TYT++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I G C +     A  LF  M   GV PN VT+N +++ L +N ++  A  +L+LM ++G 
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 222 RPDAFTYNTLLDGFCLTG 239
            P+  TYN ++ G+C+ G
Sbjct: 422 SPNIVTYNEMIKGYCILG 439



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L  +      + LF R++  G+FP+  T++ LIN   +  R+ + FVV
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + R+               C P+ +TYN +I G C  G   KA  +   M  +    
Sbjct: 413 LNLMGRNG--------------CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N+VTY ++I+G+C + +   A R+   M D G +P+  ++  ++   CK  KM+ A  L 
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + M+  G+ P+  TY  L+DG+C   +++ A  L   M+  GC
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 22/238 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I D M R     P   S+  ++    K    ++   LF  +   GL P+  T++ LI
Sbjct: 479 ALRILDLM-RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK-------- 117
           + +CK  ++     +L  + RS   P+V T+  LI             ++CK        
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+ +TY  +IDGLCK G    A E+F KM ++   PN++TY+S+IR         EA+ L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENL 657

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           F E+   G+ P+ +T+  +++    +GK++ A + L  MI+ G +P  +TY  L+ G 
Sbjct: 658 FAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 14/201 (6%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           +S    L+ +GL   L+ +S L+    ++G  +    V+ R  R            L + 
Sbjct: 165 MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTA---AVMDRYHRM-----------LSEG 210

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +P+ + YN +I+ LCK G V  A+ +  K+ +  + P+  TYTS+I G C  +D + A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M  +G +PN VT++ +++ LC +G+++EA  L+  MI HG+ P A T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G    A  LFV M++ GC
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGC 351



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 53/272 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N+++  L K  ++     L K +   G+FP++ T++ +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 94  LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
             +++     P+++T++SLI+                        PD ITY  +I+    
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN--- 189
            G V+ A     +M     +P + TY  +I+G    N++  A +    + D  V PN   
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSF 738

Query: 190 -------------------------VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
                                    V   N ++  L   G+  EA+ LL  MI  G+ PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
              YN+LL        V+ A  +F  M + GC
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC 830



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +F+ M+      P + +++ ++  L +    +   +LF  L   GL PD  T+  +I
Sbjct: 619 ALEMFNKMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGL------CK 132
             +   G+V H F  LGR++++   P + T+  LIK  K + +  +  +  L      C 
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCS 737

Query: 133 QGF----VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            G+     D    +  K+ + +   +V    +++     A  W EA  L   M+ QG+ P
Sbjct: 738 FGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCP 797

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   +N ++  L +   +D A  +   M   G       Y  L+   C   R   A+  F
Sbjct: 798 DQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITF 857

Query: 249 VSM 251
            +M
Sbjct: 858 ENM 860



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L  L + ++ D  + +FK +++ G    L  +  LI   C++ R     + 
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L              ++   PD +    +IDGL + G+ D   E    M+ +   P
Sbjct: 857 FENML--------------MRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMP 902

Query: 154 NVVTYTSVIRGFCYANDW 171
           +   YT + R       W
Sbjct: 903 SFHIYTILAREASKKRSW 920



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD   YN+++  L +   VD A  +F  M  +  + ++  Y  +I   C  +   EA+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           F  M+ +   P+ V   V++D L ++G  D     L +M      P    Y  L
Sbjct: 857 FENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 121/271 (44%), Gaps = 23/271 (8%)

Query: 9   GDITTITPNEALC--IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
           G +    P+ AL    FD+  +       V  +  +L  L + +     +  FKR     
Sbjct: 15  GSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAH 74

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDV-------------------- 106
             P LY+ +I+I CFC +      +  LG +      PDV                    
Sbjct: 75  CRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRAL 134

Query: 107 VTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
           + F  + K CKP+  TYNT+I+GLCK G +D A  LF ++    V P+  TY++++ G C
Sbjct: 135 IKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLC 194

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
            A     A +++  M++     +   +N + D  CK  ++DEA  +L  MIQ G +P   
Sbjct: 195 QAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVV 254

Query: 227 TYNTLLDGFC-LTGRVNHAKELFVSMESMGC 256
           TYN +++G C    R+  A  LF  M    C
Sbjct: 255 TYNCIINGVCQYKNRIEEAYRLFQQMVGSDC 285



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 24/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V+++N ++  L K    D  + LF RL    + PD +T+S L++  C+  R+     V
Sbjct: 146 PNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L + +  D   + ++                      + CKP  +TYN II+G+C+
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQ 265

Query: 133 -QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            +  +++A  LF +M   +  PN VTY ++I G     +      LF  M   G+ P+  
Sbjct: 266 YKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGY 325

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG--RVNHAKELFV 249
            ++ ++    K  K+DEA S+L    ++ V PD + Y TL+ G+C     RV+ A  LF 
Sbjct: 326 AYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQ 385

Query: 250 SME 252
           +M+
Sbjct: 386 NMK 388



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 25/261 (9%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A+ ++D ML  +       ++N M     K +  D  L + K +   G  P + T++ +I
Sbjct: 202 AIKVYDMMLEANYDGD-AGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCII 260

Query: 79  NCFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLI---------KVC------------ 116
           N  C+   R+   + +  +++ S   P+ VT+ ++I         + C            
Sbjct: 261 NGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGL 320

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND--WNEA 174
            PD   Y+++I    K   +D+AK +       +V P+V  YT++I G+C A     +EA
Sbjct: 321 SPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEA 380

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF  M D+ V PNV+T+N+++  LCK G+ DEA  +   M +    P+  T+  +  G
Sbjct: 381 LLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMG 440

Query: 235 FCLTGRVNHAKELFVSMESMG 255
               G+ +  + +F+ M   G
Sbjct: 441 MIHCGKTDKFERIFMDMVYKG 461



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            EA  +F  M+     PP   ++  M+  L+K       L LFK ++  GL PD Y +  
Sbjct: 271 EEAYRLFQQMV-GSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHS 329

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK--QG 134
           LI  F K+ ++     +L    R+   PDV  +T              T+I G C+  + 
Sbjct: 330 LIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYT--------------TLISGYCRARKP 375

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+A  LF  MKD+ V PNV+TY  V+RG C    ++EA ++F EM      PN +TF 
Sbjct: 376 RVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFK 435

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHG 220
           V+   +   GK D+   +   M+  G
Sbjct: 436 VMTMGMIHCGKTDKFERIFMDMVYKG 461


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 22/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F+ ML    +  PV   +++       +  D    +FK +N  G  PDL   + 
Sbjct: 478 DDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDG-HKIFKEMNRRGCQPDLTLLNT 536

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCKP-------------- 118
            ++C  K G V  G  +   I    F PDV +++ LI    K  +               
Sbjct: 537 YMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQG 596

Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
              DA  YN ++DG CK G +DKA E+  +MK K V P V TY S+I G    +  +EA 
Sbjct: 597 FALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAY 656

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            LF E   +G++ NV+ ++ ++D   K G++DEA  +L+ M++ G+ P+ +T+N+L+D  
Sbjct: 657 MLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 716

Query: 236 CLTGRVNHAKELFVSMESMGC 256
                +N A   F SM+ M C
Sbjct: 717 VKAEEINEALICFQSMKEMKC 737



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++   PP V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR
Sbjct: 627 MKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 686

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +   +++L  +++   TP+V T              +N+++D L K   +++A   F  M
Sbjct: 687 IDEAYLILEEMMKKGLTPNVYT--------------WNSLMDALVKAEEINEALICFQSM 732

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K+    PN  TY+ +I G C    +N+A   + EM  QG+ PNVVT+  ++  L K G +
Sbjct: 733 KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNI 792

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +A SL +    +G  PDA ++N L++G     R   A  +F      GC
Sbjct: 793 TDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGC 842



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 22/243 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN +L CL K +  D  L+LF+ +      P+  T++I+I+  C  G+V   +++
Sbjct: 355 PSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAE-PNSSTYNIIIDMLCMAGKVEEAYMI 413

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +  +   P+++T   ++                     + C P+++TY ++IDGL K
Sbjct: 414 RDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGK 473

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G VD A  LF  M D     N V YTS+IR F       +  ++F EM  +G QP++  
Sbjct: 474 KGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTL 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N  MD + K G +++  ++ + +  +G  PD  +Y+ L+ G    G+      +F +M+
Sbjct: 534 LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMK 593

Query: 253 SMG 255
             G
Sbjct: 594 QQG 596



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K        S+F  +   G   D   ++ +++ FCK G++   + V
Sbjct: 564 PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEV 623

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +               +K   P   TY +IIDGL K   +D+A  LF + K K ++ 
Sbjct: 624 LEEMK--------------VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIEL 669

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV+ Y+S+I GF      +EA  +  EMM +G+ PNV T+N +MD L K  +++EA    
Sbjct: 670 NVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICF 729

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +    P+ +TY+ L++G C   + N A   +  M+  G
Sbjct: 730 QSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 771



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 50/257 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S++ +++G +A+ +  +  L L +++   G    +   + L+    + GRV     +
Sbjct: 180 PAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALAL 239

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           +  +  SC  PD+V               YN  ID   K G VD A + F ++K + +KP
Sbjct: 240 VDEVKGSCLEPDIVL--------------YNVCIDCFGKAGNVDMAWKFFHELKSQGLKP 285

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEM-------------------------------M 182
           + V+YTS+I   C A   +EA+ LF +M                               +
Sbjct: 286 DDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLL 345

Query: 183 DQ----GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
           DQ    G  P+VV+FN I+  L K  K+DEA +L + M +    P++ TYN ++D  C+ 
Sbjct: 346 DQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM-KKDAEPNSSTYNIIIDMLCMA 404

Query: 239 GRVNHAKELFVSMESMG 255
           G+V  A  +   ME  G
Sbjct: 405 GKVEEAYMIRDEMEHAG 421



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 57/279 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N+ + C  K  + D     F  L S GL PD  +++ +I   CK GR+S    +
Sbjct: 250 PDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEEL 309

Query: 94  LGRIL------------------------------------RSCFTPDVVTFTSLI---- 113
            G++                                     R C  P VV+F S++    
Sbjct: 310 FGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCI-PSVVSFNSILTCLG 368

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           K  +P++ TYN IID LC  G V++A  +  +M+   + PN++T
Sbjct: 369 KKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLT 428

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
              ++   C A  +  A  +F     +G  PN VT+  ++D L K G +D+A  L + M+
Sbjct: 429 VNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML 488

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             G   +   Y +L+  F + GR     ++F  M   GC
Sbjct: 489 DTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGC 527



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 97/215 (45%), Gaps = 14/215 (6%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           ++  L + +  D    +   +      P    +++LI    +  +      +L ++    
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212

Query: 102 FTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
           +   V  FT+L++               L ++G V+ A  L  ++K   ++P++V Y   
Sbjct: 213 YEVGVPLFTTLVR--------------ALAREGRVEGALALVDEVKGSCLEPDIVLYNVC 258

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I  F  A + + A + F E+  QG++P+ V++  ++  LCK G++ EA  L   M     
Sbjct: 259 IDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERA 318

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            P A+ YNT++ G+   G+  +A +L   ++  GC
Sbjct: 319 VPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGC 353


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 20/237 (8%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           G I+TI       +FD++ R       V ++N  L  LAK          F+++   G  
Sbjct: 16  GKISTIVR-----LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYP 70

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD +T+SI++   CK G +     +LG++  S                K + ITY+ +ID
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGV--------------KLNVITYSVVID 116

Query: 129 GLCKQGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CK   VD A E+F  M       P+VVT+ S+++G C     +EA  LF  M   G +
Sbjct: 117 GCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           PNV++++ ++D LCK G++DEA  L + M++    PD   Y + + G C   RV  A
Sbjct: 177 PNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEA 233



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 24/244 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++NIM+  L K K  D    L   + + GL PD+ T+S L++  CK+G++     
Sbjct: 336 PPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACD 395

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLC 131
           +L  + +    PD  T  S++                         PD +TYNT++DGLC
Sbjct: 396 LLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC 455

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D+A     KM      P+V +YT +I   C +     A  +F EM+ +GV P+ V
Sbjct: 456 KAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTV 515

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++ ++D L +NG  D A   L+L+     +PD   +  ++DG C  G+   A E+   M
Sbjct: 516 LYHSLLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERM 572

Query: 252 ESMG 255
              G
Sbjct: 573 ADAG 576



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 20/243 (8%)

Query: 17  NEALCIFDYML-RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF---PDLY 72
           +EA   F+ M+ R HP  P    FN ++  + K+K     + LF+R+ S   F   P+L 
Sbjct: 283 DEACKTFEEMISRNHP--PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++I+++  CK  ++     ++  +     +PDVVT+++L+              DGLCK
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV--------------DGLCK 386

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A +L  +M  + V P+  T  S++     A   + A      M  +G  P++VT
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D LCK G++DEA + L  M+     PD F+Y  ++   C +G+   A  +F  M 
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506

Query: 253 SMG 255
             G
Sbjct: 507 KRG 509



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 11/217 (5%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N M+  L ++   D     F+ + S    P     + LI+  CK  R+  G ++  R+  
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM-- 327

Query: 100 SCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
                 +  F      C P+  TYN ++D LCK   +D+A+EL  +M +  + P+VVTY+
Sbjct: 328 ----KSMKEF-----YCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
           +++ G C     + A  L  EM  +GV P+  T   I++ L K GK+D A S L+ M   
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           G  PD  TYNTLLDG C  GR++ A      M +  C
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKC 475



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD  TY+ ++ GLCK G +DKAKEL  ++++  VK NV+TY+ VI G C A+  ++A  +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 178 FIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           F  M    G  P+VVTFN ++  LC   +M EA  L + M + G  P+  +Y+TLLDG C
Sbjct: 131 FKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC 190

Query: 237 LTGRVNHAKELFVSMESMGC 256
             GR++ A  L+  M    C
Sbjct: 191 KAGRLDEACRLWEEMVEKSC 210



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 120/294 (40%), Gaps = 69/294 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL IF  M       P V +FN +L  L   +       LF+ +   G  P++ ++S 
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK GR+     +   ++               K C PD + Y + + GLCK   V
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVE--------------KSCVPDLVAYTSFVTGLCKANRV 230

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE------MMDQGVQ--- 187
            +A +   KM  K  K + V +++VI   C      EA+   IE      M+D+  +   
Sbjct: 231 AEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFE 290

Query: 188 ----------------------------------------------PNVVTFNVIMDELC 201
                                                         PN+ T+N+++D LC
Sbjct: 291 EMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLC 350

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           K  ++DEA  L++ M  +G+ PD  TY+ L+DG C  G+++ A +L   M   G
Sbjct: 351 KAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEG 404



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 24/194 (12%)

Query: 42  MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSC 101
           +L  L+K    D  LS  + + + G  PDL T++ L++  CK GR+      L +++ + 
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 102 FTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCKQGFVDKAK 140
            TPDV ++T +I  +C+                    PD + Y++++DGL + G  D A 
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL 534

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           EL   +K    KP+ V +  V+ G C A    +A  +   M D G   +  T+  ++  L
Sbjct: 535 EL---LKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGL 591

Query: 201 CKNGKMDEASSLLD 214
            K GK+D+A  L+D
Sbjct: 592 RKLGKVDKARQLVD 605



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           ++   S P + ++N +L  L K    D  ++   ++ +    PD+++++I+I   C+ G+
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI------------------KVCKPDAITYNTIID 128
            +    +   +++    PD V + SL+                   +CKPD + +  ++D
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVD 554

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           GLCK G  + A E+  +M D     +  TY +V+RG       ++A++L
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQL 603


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 21/238 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           + P V ++NIM+ C+ K    +    LF+ +   GL PD  T++ +I+ F K+GR+    
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 92  VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
                +   C  PDV+T+ +LI                        KP+ ++Y+T++D  
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK+G + +A + ++ M+   + PN  TYTS+I  +C   + ++A RL  EM+  GV+ NV
Sbjct: 211 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNV 270

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           VT+  ++D LC      E   LLD M++  ++    T+  L+DG C    V+ A + F
Sbjct: 271 VTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYF 328



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+  F  M R    P    S N +L   AK    D V   FK +   G  P ++T++I+
Sbjct: 43  EAIQCFSKMKRFRVFPK-TRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIM 101

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+C CK G V           R  F  + + F  LI    PD +TYN++IDG  K G +D
Sbjct: 102 IDCMCKEGDVEAA--------RGLF--EEMKFRGLI----PDTVTYNSMIDGFGKVGRLD 147

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
                F +MKD   +P+V+TY ++I  FC      +    F EM   G++PNVV+++ ++
Sbjct: 148 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLV 207

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D  CK G M +A      M + G+ P+ +TY +L+D +C  G ++ A  L   M  +G
Sbjct: 208 DAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVG 265



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++ ++    K       +  +  +   GL P+ YT++ LI+ +CK+G +S  F +
Sbjct: 198 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRL 257

Query: 94  LGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNTIIDGLCK 132
              +L+     +VVT+T+LI  +C                    K   +T+  +IDGLCK
Sbjct: 258 ANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCK 317

Query: 133 QGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
              V KA + F ++  D  ++ N   YT++I G C  N    A  LF +M  +G+ P+  
Sbjct: 318 NKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRT 377

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  +MD   K G + EA +L D M++ G++ D   Y +L+ G     ++  A+     M
Sbjct: 378 AYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 437

Query: 252 ESMG 255
              G
Sbjct: 438 IGEG 441



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    F+ +   L      +  +  F ++    +FP   + + L++ F K+G+       
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDG---- 78

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              + R  F  D++   +     KP   TYN +ID +CK+G V+ A+ LF +MK + + P
Sbjct: 79  ---VKR--FFKDMIGAGA-----KPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIP 128

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY S+I GF      ++    F EM D   +P+V+T+N +++  CK GK+ +     
Sbjct: 129 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFF 188

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M ++G++P+  +Y+TL+D FC  G +  A + +V M  +G
Sbjct: 189 REMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 230



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%)

Query: 111 SLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
           S   VC P    ++ +   L   G V++A + F KMK   V P   +   ++  F     
Sbjct: 16  STRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGK 75

Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
            +  KR F +M+  G +P V T+N+++D +CK G ++ A  L + M   G+ PD  TYN+
Sbjct: 76  TDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNS 135

Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
           ++DGF   GR++     F  M+ M C
Sbjct: 136 MIDGFGKVGRLDDTVCFFEEMKDMCC 161



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
           P E L + D M+ +      V +F +++  L KNK     +  F R+ N  GL  +   +
Sbjct: 286 PTEGLHLLDEMVELDIKVT-VVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIY 344

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
           + +I+  CK  +V     +  ++ +    PD                 Y +++DG  KQG
Sbjct: 345 TAMIDGLCKGNQVEAATTLFEQMAQKGLVPD--------------RTAYTSLMDGNFKQG 390

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            V +A  L  KM +  +K +++ YTS++ G  + N   +A+    EM+ +G+ P+ V   
Sbjct: 391 NVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 450

Query: 195 VIMDELCKNGKMDEASSLLDLMIQH 219
            ++ +  + G ++EA  L   +++H
Sbjct: 451 SVLKKHYELGCINEAVELQSYLMKH 475


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 28/250 (11%)

Query: 28  RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
           R+HPSP       I        +       +  R+ + G  PD+ T++ILI   C  G +
Sbjct: 87  RLHPSP------QIPHPSAKPTESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGML 140

Query: 88  SHGFVVLGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTI 126
                   ++L+  F P VVT+T LI+                       +PD   YN+I
Sbjct: 141 HAALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSI 200

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I  +C++G+VD+A E+   +  K    +V+TY  ++R       W     L  +M+ +G 
Sbjct: 201 IX-MCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGC 259

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
           + NVVT++V++  LC++GK++E   LL  M + G+ PD + Y+ L+   C  GRV+ A E
Sbjct: 260 EANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIE 319

Query: 247 LFVSMESMGC 256
           +   M S GC
Sbjct: 320 VLDVMISDGC 329



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 24/244 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++NI+L  L     ++    L   + + G   ++ T+S+LI+  C+ G+V  G  +L 
Sbjct: 228 VITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLK 287

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            + +    PD   +  LI V                     C PD + YNTI+  LCKQ 
Sbjct: 288 DMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQK 347

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
             D+A  +F K+ +    PN  +Y +V      +     A  + +EM+D  V P+V+ +N
Sbjct: 348 RADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDX-VDPDVIAYN 406

Query: 195 VIMDELCKNGKMDEASSLL-DLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            ++  LC++G +DEA  LL D+ ++    +P   +YN +L G C  GRV+ A E+  +M 
Sbjct: 407 SLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMV 466

Query: 253 SMGC 256
             GC
Sbjct: 467 DKGC 470



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 24/242 (9%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++++++  L ++   +  + L K +   GL PD Y +  LI   CK GRV     VL 
Sbjct: 263 VVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLD 322

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++     PD+V + +++                       C P+A +YNT+   L   G
Sbjct: 323 VMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSG 382

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI--EMMDQGVQPNVVT 192
              +A  + L+M D  V P+V+ Y S+I   C     +EA  L +  EM     +P+VV+
Sbjct: 383 HKVRALGMILEMLDX-VDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVS 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LC+ G++ +A+ +L  M+  G  P+  TY  L++G    G +N A++L  ++ 
Sbjct: 442 YNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLV 501

Query: 253 SM 254
           +M
Sbjct: 502 NM 503



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++         D  + L   +    L PD++ ++ +I   C+ G V   F V
Sbjct: 157 PTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIX-MCREGYVDRAFEV 215

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  I    +  DV+T+  L+                     K C+ + +TY+ +I  LC+
Sbjct: 216 ISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCR 275

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V++   L   MK K ++P+   Y  +I   C     + A  +   M+  G  P++V 
Sbjct: 276 DGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVN 335

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +N I+  LCK  + DEA S+ + + + G  P+A +YNT+      +G    A  + + M
Sbjct: 336 YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEM 394



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + ++N +L CL K K  D  LS+F++L   G  P+  +++ +   F  +G   H    
Sbjct: 331 PDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTV---FSALGSSGHKVRA 387

Query: 94  LGRILR--SCFTPDVVTFTSLIKV-----------------------CKPDAITYNTIID 128
           LG IL       PDV+ + SLI                         CKP  ++YN ++ 
Sbjct: 388 LGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLL 447

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           GLC+ G V  A E+   M DK   PN  TYT +I G  +    N+A+ L   +++
Sbjct: 448 GLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLVN 502


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 21/220 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---- 113
           +FK +N  G  PDL   +  ++C  K G V  G  +   I    F PDV +++ LI    
Sbjct: 11  IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLT 70

Query: 114 KVCKP-----------------DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
           K  +                  DA  YN ++DG CK G VDKA E   +MK K+V P V 
Sbjct: 71  KAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVA 130

Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
           TY S+I G    +  +EA  LF E   +G++ NV+ ++ ++D   K G++DEA  +L+ M
Sbjct: 131 TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM 190

Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           ++ G+ P+ +T+N+L+D       +N A   F SM+ M C
Sbjct: 191 MKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKC 230



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +++   PP V+++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR
Sbjct: 120 MKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 179

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
           +   +++L  +++    P+V T              +N+++D L K   +++A   F  M
Sbjct: 180 IDEAYLILEEMMKKGLAPNVYT--------------WNSLMDALVKAEEINEALICFQSM 225

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K+    PN  TY+ +I G C    +N+A   + EM  QG+ PNVVT+  ++  L K G +
Sbjct: 226 KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNI 285

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +A SL +    +G  PDA ++N L++G     R   A  +F      GC
Sbjct: 286 TDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGC 335



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K        S+F  +   G   D   ++ +++ FCK G+V   +  
Sbjct: 57  PDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEA 116

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +               +K   P   TY +IIDGL K   +D+A  LF + K K ++ 
Sbjct: 117 LEEMK--------------VKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIEL 162

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV+ Y+S+I GF      +EA  +  EMM +G+ PNV T+N +MD L K  +++EA    
Sbjct: 163 NVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICF 222

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +    P+ +TY+ L++G C   + N A   +  M+  G
Sbjct: 223 QSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 264



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 62/120 (51%)

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  +   ++F +M  +  +P++    + +     A D  + + +F ++   G  P+V +
Sbjct: 2   HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRS 61

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +++++  L K G+  E SS+   M Q G   DA  YN ++DGFC +G+V+ A E    M+
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK 121


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 58/281 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--F 91
           P   +FN+++  L ++   D    LF +++  G  P+ +T  IL+  FC+ GR      F
Sbjct: 149 PETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEF 208

Query: 92  V-------------------------------VLGRILRSCFTPDVVTFTSLIKVC---- 116
           V                               ++ R+      PDVVTF S I       
Sbjct: 209 VDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAG 268

Query: 117 ---------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                                KP+ +T+N ++ G C++G +++A+ L   MK      ++
Sbjct: 269 KVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSL 328

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            +Y + + G        E + +  EM++ G++PN+ ++N++MD LC+N  M +A  L+DL
Sbjct: 329 ESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDL 388

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+ +GV PD  TY TLL G+C  G+V  AK +   M   GC
Sbjct: 389 MVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGC 429



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 37/261 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           E   + D M+  +   P + S+NI++  L +N        L   + S G++PD  T++ L
Sbjct: 346 EGRSVLDEMVE-NGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTL 404

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C  G+V     +L  ++R              K C P+  T NT+++ L K+G   
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIR--------------KGCHPNTYTCNTLLNSLWKEGRKS 450

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------- 187
           +A+E+  KM +K+ + + VT   V+ G C   +  +A  +  EM   G            
Sbjct: 451 EAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAG 510

Query: 188 ------------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                       P+V+T+  +++ LCK GK++EA      M+   + PD+ TY+T +  F
Sbjct: 511 LVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNF 570

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+++ A  +   ME  GC
Sbjct: 571 CKQGKISSALRVLKDMERNGC 591



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 64/291 (21%)

Query: 27  LRMH-PSPPPVSSFNIML--GCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           LR H PS P       +L    L +N+ HY  V SL+  +  TG+ P+ YT ++LI   C
Sbjct: 105 LRTHFPSTPLPLQLYHLLLRSSLQQNRPHY--VTSLYTDMIQTGVNPETYTFNLLIQSLC 162

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------DAITY 123
           +   + H   +  ++      P+  T   L++  C+                   + + Y
Sbjct: 163 ESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEFVDGKMGGNVNRVVY 222

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           NT++   CKQ   D+A++L  +M +K + P+VVT+ S I   C A    EA R+F +M  
Sbjct: 223 NTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQM 282

Query: 184 QGV----QPNVVTFNVIMDELCKNGKMDEASSL--------------------------- 212
            G     +PNVVTFN+++   C+ G M+EA SL                           
Sbjct: 283 DGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNG 342

Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                   LD M+++G+ P+ ++YN ++DG C    +  A+ L   M S G
Sbjct: 343 KLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNG 393



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 9/246 (3%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  I + M+R     P   + N +L  L K         + +++N      D  T +I+
Sbjct: 416 EAKAILNEMIR-KGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIV 474

Query: 78  INCFCKMGRVSHGFVVLGRIL--------RSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           +N  C+ G +     V+  +         +      +V     +    PD ITY T+I+G
Sbjct: 475 VNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLING 534

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G +++AK+ F++M  KN+ P+ VTY + +  FC     + A R+  +M   G    
Sbjct: 535 LCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKT 594

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + T+N ++  L   G++ E   L+D M + G+ PD  TYN +++  C  G+   A  L  
Sbjct: 595 LQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLH 654

Query: 250 SMESMG 255
            M   G
Sbjct: 655 EMLDKG 660



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN+ML    +    +   SL + +   G F  L +++  +    + G++  G  V
Sbjct: 291 PNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSV 350

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  ++ +   P++ +              YN ++DGLC+   +  A+ L   M    V P
Sbjct: 351 LDEMVENGIEPNIYS--------------YNIVMDGLCRNHMMLDARRLMDLMVSNGVYP 396

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTYT+++ G+C      EAK +  EM+ +G  PN  T N +++ L K G+  EA  +L
Sbjct: 397 DTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEML 456

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +   + D  T N +++G C  G +  A E+   M + G
Sbjct: 457 QKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDG 498



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 23/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K    +     F  + +  L PD  T+   +  FCK G++S    V
Sbjct: 523 PDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRV 582

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  + R+  +  + T+ SLI                     +   PD  TYN +I+ LC+
Sbjct: 583 LKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCE 642

Query: 133 QGFVDKAKELFLKMKDKNV-KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
            G    A  L  +M DK V  PNV ++  +I+ FC + D+  A  LF   +        +
Sbjct: 643 GGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEAL 702

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            ++++ +EL   GK+ +A  L +  ++  +    F Y  L+D  C  GR++ A  L   +
Sbjct: 703 -YSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKL 761

Query: 252 ESMG 255
              G
Sbjct: 762 IDKG 765



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +SL   MIQ GV P+ +T+N L+   C +  ++HA+ELF  M   GC
Sbjct: 136 TSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGC 182


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K+       S+F  +   GL P + +++ L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +L S   PDV T++ LI  +CK                    P+ +T+ T+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHC 258

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G VD A E++  M  +++ P+++TY ++I G C   D  +A  L  EM  +G++P+  
Sbjct: 259 KNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G +D A      MIQ  +R D   Y  L+ G C  GR   A+++   M
Sbjct: 319 TYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 252 ESMG 255
            S+G
Sbjct: 379 LSVG 382



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L  L K +++  V   ++ +   G    LY  +IL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV++ +L+                        +PD  TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M  K + PN VT+T++I G C     + A  ++  M+ Q
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQ 276

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D M   G++PD FTY TL+DG C  G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI   CK GRV     +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEI 269

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L     PD++T+ +LI                     K  KPD  TY T+IDG CK
Sbjct: 270 YKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCK 329

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A +   +M   N++ + V YT++I G C      +A+++  EM+  G++P++ T
Sbjct: 330 EGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGT 389

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +I++E CK G + + S LL  M ++G  P   TYN L++G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 27/269 (10%)

Query: 8   EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
           +GDI       A  +FD + +    P  VS +N ++    +    D    L   + ++G+
Sbjct: 155 DGDIRV-----AQSVFDAITKWGLRPSVVS-YNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 68  FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK--------- 117
            PD+YT+S+LIN  CK  ++     +   +L     P+ VTFT+LI   CK         
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAME 268

Query: 118 -----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
                      PD ITYNT+I GLCK+G + +A  L  +M  K +KP+  TYT++I G C
Sbjct: 269 IYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
              D + A +    M+   ++ + V +  ++  LC+ G+  +A  +L  M+  G++PD  
Sbjct: 329 KEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIG 388

Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           TY  +++ FC  G V    +L   M+  G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRNG 417



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 71  LYTHSILINCFCKMGRVSHG----FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI 126
           L+++  +I+  C    +S       VV+ R  +   +    T        + D   ++ +
Sbjct: 19  LHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVFSGL 78

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I    + GF+  A E +   ++  +     T   V+        +      + E+++ G 
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 138

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
             ++  FN++M   CK+G +  A S+ D + + G+RP   +YNTL++G+   G ++    
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 247 LFVSMESMG 255
           L  +M + G
Sbjct: 199 LKSAMLASG 207


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 122/257 (47%), Gaps = 25/257 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IF+ ML    SP  V+   ++ G   K    D  LSL +RL  TG  P    +S LI+  
Sbjct: 179 IFEEMLSKGHSPELVTYATVVNG-YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 237

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK  R      +    + +    DV+ +TS I                       C PD 
Sbjct: 238 CKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 295

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           ++YN II  LCK   V +AKEL  +  ++   P V   T ++ G C +    EA  +   
Sbjct: 296 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 355

Query: 181 MMDQGVQ-PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           M++ G + P+VVT++ ++D LCK  ++D+A  +L  M + G  PD  TY  ++D FC  G
Sbjct: 356 MLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVG 415

Query: 240 RVNHAKELFVSMESMGC 256
           R++ A+ELF  M   GC
Sbjct: 416 RLDEARELFQRMHERGC 432



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 14/235 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +   M+    +P PVS +N+++  L K+        L  +       P +   ++
Sbjct: 277 DEAKAVHVKMIEAGCAPDPVS-YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTV 335

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++  CK  RV    V+L R+L    T D            P  +TY+ +IDGLCK   +
Sbjct: 336 LVDGLCKSRRVEEACVILERMLE---TGDRA----------PSVVTYSAVIDGLCKADRL 382

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A  +  KM+     P+VVTYT++I  FC     +EA+ LF  M ++G   +VV +N++
Sbjct: 383 DDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNIL 442

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +   C+  K+DEA ++++ M   G++P+  + +T++DG C   RV  A+ L   M
Sbjct: 443 IRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 131/260 (50%), Gaps = 24/260 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL IF  M+ M   P     + +++G L K    D   S F+R+  +G  PD  T+++
Sbjct: 104 DKALQIFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTV 162

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           L++   K  +   G  +   +L    +P++VT+ +++   CK                  
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P    Y+T+IDGLCK    D+A+ELF +M   +V+ +V+ YTS I G C A   +EAK
Sbjct: 223 RSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAK 280

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            + ++M++ G  P+ V++NVI+  LCK+ ++ EA  L+D  ++    P       L+DG 
Sbjct: 281 AVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGL 340

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C + RV  A  +   M   G
Sbjct: 341 CKSRRVEEACVILERMLETG 360



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 23/236 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F  ++  L +    D  L +F ++    + PD + ++++I   CK+ ++      
Sbjct: 85  PTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 94  LGRILRSCFTPDVVTFT----SLIKVCK-----------------PDAITYNTIIDGLCK 132
             R+++S   PD VT+T    SL K CK                 P+ +TY T+++G CK
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D+A  L  ++K     P+   Y+++I G C  +  +EA+ LF EM    VQ +V+ 
Sbjct: 205 AGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQ-DVIV 262

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   +  LCK GK+DEA ++   MI+ G  PD  +YN ++   C   RV+ AKEL 
Sbjct: 263 YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 318



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 21/230 (9%)

Query: 40  NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
           N +L     +  +     +FK    T   PD +T+  LI  FCK  ++     +LG +  
Sbjct: 21  NSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKA 80

Query: 100 SCFTPDVVTFTSLI-KVC--------------------KPDAITYNTIIDGLCKQGFVDK 138
           +  TP +VTF SLI K+C                    KPDA  Y  +I  LCK   +D 
Sbjct: 81  AGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDL 140

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A   F +M      P+ VTYT ++     A  W +  ++F EM+ +G  P +VT+  +++
Sbjct: 141 AASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVN 200

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             CK G++D+A SL+  +   G  P    Y+TL+DG C   R + A+ELF
Sbjct: 201 GYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF 250



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
           G   + YT + L+  F   G     + V    L + F PD  T+ +LI+  CK       
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 118 -------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                        P  +T+ ++I  LC+  F DKA ++F +M D  VKP+   YT VI  
Sbjct: 72  VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGH 131

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
            C  N  + A   F  M+  G  P+ VT+ V++  L K  K ++   + + M+  G  P+
Sbjct: 132 LCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPE 191

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             TY T+++G+C  GR++ A  L   ++  G
Sbjct: 192 LVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 140 KELFLKMKDKNV---KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +E +   KD+ V   +P+  TY ++IRGFC A    +A  L  EM   G+ P +VTF  +
Sbjct: 34  REAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSL 93

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + +LC+    D+A  +   MI   V+PDAF Y  ++   C   +++ A   F  M   GC
Sbjct: 94  IRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGC 153


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++    K K       LF+ + + G FP++ T++ LI+ +CK G +     +
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 94  LGRILRSCFTPDVVTFTSLIK--VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
             R+      PDV  +  +      KP+ +TY  ++DGLCK   V  A++L   M     
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +PN + Y ++I GFC A   +EA+ +F +M++ G  PNV T++ ++D L K+ ++D    
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +L  M+++   P+   Y  ++DG     + + A +L + ME  GC
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC 781



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 21/223 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K         L + +   G  P+   +  LI+ FCK  ++     V
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             +++   + P+V T++SLI                       C P+ + Y  +IDGL K
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
               D+A +L L M++K  KPNVVTYT++I GF  A   ++   LF EM  +G  PN VT
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVT 822

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + V+++  C  G +DEA +LL+ M Q        +Y  +++G+
Sbjct: 823 YTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY 865



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 45  CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP 104
           CL     ++    +   +   G  PD  T+S +I   C   RV + F +   +  +   P
Sbjct: 463 CLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVP 522

Query: 105 DVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
           DV T+T LI              D   K G + +A     +M     +P VVTYT++I  
Sbjct: 523 DVYTYTILI--------------DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHA 568

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM-------- 216
           +  A   + A  LF  M+ +G  PNV+T+  ++D  CK+G +++A  +   M        
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 217 ------IQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
                 I++ V  +P+  TY  L+DG C   +V  A++L  +M   GC
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 29/246 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV------ 87
           P  + FN ++    K+  +     L K++      P    ++ILI   C  G +      
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 88  -----------SHGFVVLGRILRSCFTPDVVTFTSLIKVCK-----------PDAITYNT 125
                      S G  VL ++    F   +  F    K  K           PD  TY+ 
Sbjct: 436 ELAEKAYNEMLSAG-TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSE 494

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I  LC    V+ A  LF +MK   V P+V TYT +I  F  A    +A     EM+  G
Sbjct: 495 VIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
            +P VVT+  ++    K  K+  A+ L +LMI  G  P+  TY  L+DG+C +G +  A 
Sbjct: 555 CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614

Query: 246 ELFVSM 251
           +++  M
Sbjct: 615 QIYARM 620



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 31/263 (11%)

Query: 24  DYMLRMHPSP--PPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           D++ RM  +   P V ++ I+L GCL K K       +   + + G +P     + L++ 
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCGCLNK-KQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK----PDAIT-------YNTIID 128
           +CK    S+ + +L ++ +    P  V +  LI  +C     P  +T       YN ++ 
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447

Query: 129 G---------------LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                           LC  G  +KA ++  +M      P+  TY+ VI   C A+    
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVEN 507

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  LF EM   GV P+V T+ +++D   K G + +A + LD M++ G  P   TY TL+ 
Sbjct: 508 AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIH 567

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            +    +V+ A ELF  M + GC
Sbjct: 568 AYLKAKKVSVANELFELMIAKGC 590



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 117/258 (45%), Gaps = 26/258 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +F  M+  H   P V +++ ++  L K+K  D VL +  ++      P++  ++ 
Sbjct: 697 DEAQEVFHKMVE-HGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTE 755

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           +I+   K+ +    + ++  +      P+VVT+T++I                     K 
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +TY  +I+  C  G +D+A  L  +MK      +V +Y  VI G  Y  ++  + 
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEG--YKREFILSL 873

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT--YNTLLD 233
            L  E+   G  P ++ + V++D   K G+++ A  L   +I   +   A    Y +L+ 
Sbjct: 874 GLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIY 933

Query: 234 GFCLTGRVNHAKELFVSM 251
            F    ++ HA ELF  M
Sbjct: 934 SFSYASKIGHAFELFYDM 951



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 17/208 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N ++    +    DT   + + ++  GL  D +T        CK+G+      +
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL 298

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + +        D V          P+ I YN +I GLC+  F ++A +   +M+  +  P
Sbjct: 299 IEK-------EDFV----------PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIP 341

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NV TY  ++ G          KR+   M+ +G  P+   FN ++   CK+     A  LL
Sbjct: 342 NVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLL 401

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             M +   +P    YN L+   C  G +
Sbjct: 402 KKMEKCECKPGYVVYNILIGSICSGGEL 429



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 25/216 (11%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M+      P V ++  M+    K    D  L LF+ + S G  P+  T+++LIN  C  G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK-------------------PDAITYNTI 126
            +   + +L  + ++ +   V ++  +I+  K                   P  + Y  +
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVL 894

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNV----KPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           ID   K G ++ A EL  ++   ++    K N+  YTS+I  F YA+    A  LF +M+
Sbjct: 895 IDNFVKAGRLEVALELHKEVISASMSMAAKKNL--YTSLIYSFSYASKIGHAFELFYDMI 952

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
             GV P++ TF  ++  L +  + +EA  L D + Q
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 75  SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
           ++LI   C+ G  +     LGR+    + P  +T+ +L++V                   
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
                D  T       LCK G   K +E    ++ ++  PN + Y  +I G C A+ + E
Sbjct: 270 LGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEE 326

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A      M      PNV T+ +++       ++     +L +MI  G  P    +N+L+ 
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVH 386

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
            +C +   ++A +L   ME   C
Sbjct: 387 AYCKSDDFSYAYKLLKKMEKCEC 409


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 27/271 (9%)

Query: 6   SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           S  GDI      EA  IF+ M R       V  ++ M+    +  +     +LF  ++  
Sbjct: 298 SSSGDI-----EEAEKIFEEM-REKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQR 351

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTF-TSLIKVCK------- 117
            + P+ +T+  LI   CK G++    ++L  +       ++V F T++   C+       
Sbjct: 352 DIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEA 411

Query: 118 -------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRG 164
                         D  TYN + +GLCK    D+AK +   M +K VKPNVVT+T  I  
Sbjct: 412 LRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEI 471

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +C   +  EA+RLF +M  +G  PN++T+N ++D  CK  K+ +A  +   MI  G+ PD
Sbjct: 472 YCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPD 531

Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            +TY++L+ G C+ GRV+ A +LF  M   G
Sbjct: 532 LYTYSSLIHGECIVGRVDEALKLFNEMRLKG 562



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 111/218 (50%), Gaps = 21/218 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN  +    +    D  L L   +   G+  D++T++IL N  CK+ R      +L  ++
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV 454

Query: 99  RSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCKQGFVD 137
                P+VVTFT  I++ CK                    P+ ITYNT+ID  CK+  V 
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A ++  +M +K + P++ TY+S+I G C     +EA +LF EM  +G+  NV T+  ++
Sbjct: 515 QAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
             L K G+ DEA  L D M++ G+ PD   + +L+  F
Sbjct: 575 SGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 125/262 (47%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTHS 75
           +E + ++DY+          S F ++L  L +    D  +  F R+  +  F   + + +
Sbjct: 162 DETIRVYDYVEEKGLVIEERSCFVLLLA-LKRCGEVDFCVRFFHRMVESNKFEIRVQSLT 220

Query: 76  ILINCFCKMGRVSHGFVVLGRIL-RSCFTPDVVTFTSLI----------------KVCKP 118
           ++I+  C+ G V     ++  ++ +    P+V T+ +L+                K+ + 
Sbjct: 221 LVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEK 280

Query: 119 DAI-----TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           + +     TY+ +I      G +++A+++F +M++KN++ +V  Y+S+I       +   
Sbjct: 281 EQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKR 340

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  LF EM  + + PN  T+  ++  +CK G+M+ A  LL  M   GV  +   +NT +D
Sbjct: 341 AFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMD 400

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+C  G+++ A  L   ME  G
Sbjct: 401 GYCRRGKMDEALRLQAIMEKKG 422



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA CI + M+      P V +F + +    K  +      LF+ +   G  P++ T++ 
Sbjct: 444 DEAKCILNSMVE-KGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNT 502

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+ +CK  +V     +   ++     PD+ T++SLI               G C  G V
Sbjct: 503 LIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIH--------------GECIVGRV 548

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D+A +LF +M+ K +  NV TYTS+I G       +EA +L+ EMM  G+ P+   F  +
Sbjct: 549 DEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSL 608

Query: 197 MDELCK 202
           +    K
Sbjct: 609 VGSFHK 614


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 22/253 (8%)

Query: 24  DYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
           D ML+   SP  +S++N ++  L   +  D    + K +   G+ PD  T++ILIN +C+
Sbjct: 350 DEMLKKGISPT-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 84  MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK---------------------PDAIT 122
                  F++   +L S   P   T+TSL+ V                       PDAI 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N +IDG C    V  A EL   M    V P+ VT+ ++++G C      EA+ LF EM 
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +G++P+ ++FN ++    + G + +A  + + M+  G  P   TYN L+ G C     +
Sbjct: 529 RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGD 588

Query: 243 HAKELFVSMESMG 255
            A+EL   M S G
Sbjct: 589 LAEELLKEMVSKG 601



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  +L  L+K         LFK++ S G+ PD    + LI+  C    V   F +
Sbjct: 429 PTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFEL 488

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + R             +KV  PD +T+NTI+ G C++G V++A+ELF +MK + +KP
Sbjct: 489 LKDMDR-------------MKV-PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + +++ ++I G+    D  +A R+  EM+D G  P V+T+N ++  LCKN + D A  LL
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 214 DLMIQHGVRPDAFTYNTLLDGFC 236
             M+  G+ PD  TY TL++G  
Sbjct: 595 KEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 141/273 (51%), Gaps = 43/273 (15%)

Query: 22  IFDYMLR----MHPSPPPVSSFNIML--GCLAKNKHYDTVLSLFKRLNSTG----LFPDL 71
           +FDY+++    M+ +      F  M   G L   +  +++LSLF +LN T     L+ ++
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212

Query: 72  ---------YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------- 113
                    YT +I+IN  CK G++      +G +  S   P++VT+ +++         
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 114 ------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSV 161
                       +  +PD+ TY ++I G+CKQG +++A ++F +M  K ++P+ V Y ++
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTL 332

Query: 162 IRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
           I GFC   + + A     EM+ +G+ P + T+N ++  L    + DEA  ++  + + G+
Sbjct: 333 IDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGI 392

Query: 222 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            PDA TYN L++G+C   R  +AK+ F+  + M
Sbjct: 393 SPDAITYNILINGYC---RCANAKKAFLLHDEM 422



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++  ++  + K    +    +F+ +   GL P    ++ LI+ FC  G +      
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
              +L+   +P + T+ SLI                     K   PDAITYN +I+G C+
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
                KA  L  +M    +KP   TYTS++      N   EA  LF ++  +GV P+ + 
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           FN ++D  C N  +  A  LL  M +  V PD  T+NT++ G C  G+V  A+ELF  M+
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMK 528

Query: 253 SMG 255
             G
Sbjct: 529 RRG 531



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%)

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           +I ++ +I   C     D+A E F  MK+K V P + T  S++  F   N    A  L+ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM    ++ +V TFN++++ LCK GK+ +A   +  M   GV+P+  TYNT++ G+C +G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 240 RVNHAKELFVSME 252
           RV  A  +  +M+
Sbjct: 271 RVEAADAILTTMK 283



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +FN ++    +    +    LF  +   G+ PD  + + LI+ + + G +   F 
Sbjct: 498 PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFR 557

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           V   +L + F P V              +TYN ++ GLCK    D A+EL  +M  K + 
Sbjct: 558 VRNEMLDTGFNPTV--------------LTYNALVQGLCKNQEGDLAEELLKEMVSKGMT 603

Query: 153 PNVVTYTSVIRGFCYANDWNEAK 175
           P+  TY ++I G    N  +E K
Sbjct: 604 PDDTTYFTLIEGIAKVNIPDENK 626



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%)

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           E     +D+    + + +  +I+  C  N  +EA   F  M ++GV P + T N ++   
Sbjct: 137 EFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLF 196

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K  + + A  L   M +  ++   +T+N +++  C  G++  AK+    ME+ G
Sbjct: 197 LKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG 251


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 21/228 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            +N ++  L K+ + +  L LF  ++  G  PD+YT + LIN  CK  ++     +   +
Sbjct: 449 GYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM 508

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
                  + VT+ +L+                       C  D ITYN +I  LCK G V
Sbjct: 509 FLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAV 568

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +K   LF +M  K + P +++   +I G C     N+A +   +M+ +G+ P++VT+N +
Sbjct: 569 EKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSL 628

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           ++ LCK G + EAS+L + +   G+RPDA TYNTL+   C  G  N A
Sbjct: 629 INGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDA 676



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FNIM+  L K  +  + L L   + +    P++ T++ILIN FCK GR+     +
Sbjct: 375 PDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEI 434

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           +  +     + + V +  LI                     K CKPD  T+N++I+GLCK
Sbjct: 435 VNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCK 494

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR---------------- 176
              +++A  L+  M  + V  N VTY +++  F   +   +A +                
Sbjct: 495 NHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNIT 554

Query: 177 -------------------LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
                              LF EM+ +G+ P +++ N+++  LC+ GK+++A   L  MI
Sbjct: 555 YNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMI 614

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  TYN+L++G C  G V  A  LF  ++S G
Sbjct: 615 HRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 27/257 (10%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EAL + + M  M    P V +FN ++  L +         L  R+   G   D  T+  
Sbjct: 257 SEALQLLEDMFLM-CCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGY 315

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           L++  C+MG+V     +L +I      P+ V + +LI                       
Sbjct: 316 LMHGLCRMGQVDEARALLNKIP----NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
             +PDA T+N +IDGL K+G++  A EL  +M  K  +PNV+TYT +I GFC      EA
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             +   M  +G+  N V +N ++  LCK+G ++EA  L   M   G +PD +T+N+L++G
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 235 FCLTGRVNHAKELFVSM 251
            C   ++  A  L+  M
Sbjct: 492 LCKNHKMEEALSLYHDM 508



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +L   P+P  V    ++ G +A  +  +    L+  +   G  PD YT +I+I+   K G
Sbjct: 332 LLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKG 391

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            +     +L  ++   F P+V+T+T LI              +G CKQG +++A E+   
Sbjct: 392 YLVSALELLNEMVAKRFEPNVITYTILI--------------NGFCKQGRLEEAAEIVNS 437

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  K +  N V Y  +I   C   +  EA +LF EM  +G +P++ TFN +++ LCKN K
Sbjct: 438 MSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHK 497

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           M+EA SL   M   GV  +  TYNTL+  F +   +  A +L   M   GC
Sbjct: 498 MEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGC 548



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +A  +   M  ++   P   S+N++L  L          ++F  + S G+ P +YT  
Sbjct: 150 PGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFG 209

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +++   C +  V     +L  + +                C P+++ Y T+I  LC+   
Sbjct: 210 VVMKALCMVSEVDSACSLLRDMAKHG--------------CVPNSVIYQTLIHALCENNR 255

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A +L   M     +P+V T+  VI G C A   +EA +L   M+ +G   + +T+  
Sbjct: 256 VSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGY 315

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +M  LC+ G++DEA +LL+ +      P+   YNTL+ G+  +GR   AK+L 
Sbjct: 316 LMHGLCRMGQVDEARALLNKI----PNPNTVLYNTLISGYVASGRFEEAKDLL 364



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 22/237 (9%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EAL +F  M       P + +FN ++  L KN   +  LSL+  +   G+  +  T++ L
Sbjct: 465 EALQLFGEM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTL 523

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
           ++ F     +   F ++  +L      D +T+  LIK +CK                   
Sbjct: 524 VHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI 583

Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P  I+ N +I GLC+ G V+ A +    M  + + P++VTY S+I G C      EA  
Sbjct: 584 FPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN 643

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           LF ++  +G++P+ +T+N ++   C  G  ++A  LL   +  G  P+  T++ L++
Sbjct: 644 LFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 15/186 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            +A  + D ML     P    ++N ++  L K    +  L LF+ +   G+FP + + +I
Sbjct: 534 QQAFKLVDEML-FRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNI 592

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G+V+     L  ++    TPD+VT              YN++I+GLCK G V
Sbjct: 593 LISGLCRTGKVNDALKFLQDMIHRGLTPDIVT--------------YNSLINGLCKMGHV 638

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A  LF K++ + ++P+ +TY ++I   C+   +N+A  L  + +D G  PN VT++++
Sbjct: 639 QEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSIL 698

Query: 197 MDELCK 202
           ++ + K
Sbjct: 699 INYIVK 704



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P   +YN ++D L        A  +F  M  + V P V T+  V++  C  ++ + A 
Sbjct: 166 CDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSAC 225

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  +M   G  PN V +  ++  LC+N ++ EA  LL+ M      PD  T+N ++ G 
Sbjct: 226 SLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGL 285

Query: 236 CLTGRVNHAKELFVSM 251
           C  GR++ A +L   M
Sbjct: 286 CRAGRIHEAAKLLDRM 301



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           K G   +A  L L M    +  P   +Y  V+      +    A  +F +M+ +GV P V
Sbjct: 146 KAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTV 205

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF V+M  LC   ++D A SLL  M +HG  P++  Y TL+   C   RV+ A +L   
Sbjct: 206 YTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLED 265

Query: 251 MESMGC 256
           M  M C
Sbjct: 266 MFLMCC 271


>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 91/142 (64%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           K+   D + YNTIIDGLCK   V+ A EL+ +M  + + P+V T+ S+I GFC      +
Sbjct: 11  KLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKD 70

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  LF +M+ + + P+V TF +++D LCK GKM EA S++ +M++ GV P+  TY ++++
Sbjct: 71  AFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIME 130

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G+CL   VN  K +F ++  MG
Sbjct: 131 GYCLVNEVNKTKHVFRTISRMG 152



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 14/201 (6%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V  +N ++  L K+K  +    L+  + +  + PD+ T + LI  FC +G++   F +  
Sbjct: 17  VVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGLFS 76

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
           +++     P V TFT L+              DGLCK+G + +AK +   M    V PNV
Sbjct: 77  QMVLKNINPSVYTFTILV--------------DGLCKEGKMKEAKSVIAMMMKDGVLPNV 122

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           VTYTS++ G+C  N+ N+ K +F  +   GV PN  ++N++++  CK   ++EA  L   
Sbjct: 123 VTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKE 182

Query: 216 MIQHGVRPDAFTYNTLLDGFC 236
           M   G+ P   TY++L+DG C
Sbjct: 183 MCCRGIVPITVTYSSLIDGLC 203



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 70/308 (22%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+A  ++  M+    SP  V++FN ++              LF ++    + P +YT +I
Sbjct: 34  NDAYELYSEMIAEKISPD-VATFNSLIYGFCIIGQLKDAFGLFSQMVLKNINPSVYTFTI 92

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
           L++  CK G++     V+  +++    P+VVT+TS+++  C                   
Sbjct: 93  LVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMG 152

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN------ 169
             P+  +YN +I+G CK   V++A  LF +M  + + P  VTY+S+I G C +       
Sbjct: 153 VAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLCKSTMLGSLL 212

Query: 170 ------------------------------------------DWNEAKRLFIEMMDQGVQ 187
                                                         A+ +F +++ +G  
Sbjct: 213 MRCMLMVNHLIYPLTVLYIDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLIKGYS 272

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            N+ T+N++++ LCK G  DEA +LL  M  +G+ PDA TY T +           A++L
Sbjct: 273 LNIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETNIRALFHKDENEKAEKL 332

Query: 248 FVSMESMG 255
           F  M + G
Sbjct: 333 FRKMIARG 340



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
            D+  ++ +I+  CK   V+  + +   ++    +PDV TF SLI               
Sbjct: 15  SDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIY-------------- 60

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G C  G +  A  LF +M  KN+ P+V T+T ++ G C      EAK +   MM  GV P
Sbjct: 61  GFCIIGQLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLP 120

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NVVT+  IM+  C   ++++   +   + + GV P+  +YN +++GFC    VN A  LF
Sbjct: 121 NVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILF 180

Query: 249 VSM 251
             M
Sbjct: 181 KEM 183



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 51/246 (20%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLG-CLA----KNKHYDTVLSLFKRLNSTGLFPDLY 72
           EA  +   M++    P  V+  +IM G CL     K KH      +F+ ++  G+ P+  
Sbjct: 105 EAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKH------VFRTISRMGVAPNTQ 158

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------- 117
           +++I+IN FCK+  V+   ++   +      P  VT++SLI  +CK              
Sbjct: 159 SYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLCKSTMLGSLLMRCMLM 218

Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKD----------------KNVKPNV 155
                 P  + Y   ID LCK   +DKA  L  K+KD                K    N+
Sbjct: 219 VNHLIYPLTVLY---IDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLIKGYSLNI 275

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            TY  +I G C    ++EA+ L  +M D G+ P+ VT+   +  L    + ++A  L   
Sbjct: 276 QTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETNIRALFHKDENEKAEKLFRK 335

Query: 216 MIQHGV 221
           MI  G+
Sbjct: 336 MIARGL 341



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%)

Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
           +++ K V  +VV Y ++I G C     N+A  L+ EM+ + + P+V TFN ++   C  G
Sbjct: 7   QIEGKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIG 66

Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ +A  L   M+   + P  +T+  L+DG C  G++  AK +   M   G
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDG 117



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 49/211 (23%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N+   +F  + RM  +P    S+NIM+    K K  +  L LFK +   G+ P   T+S 
Sbjct: 139 NKTKHVFRTISRMGVAPNT-QSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSS 197

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFT-------PDVVTFTS------------------ 111
           LI+  CK         +LG +L  C         P  V +                    
Sbjct: 198 LIDGLCKS-------TMLGSLLMRCMLMVNHLIYPLTVLYIDALCKSNHLDKAIALVKKI 250

Query: 112 ----------------LIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                           LIK    +  TYN +I+GLCK+G  D+A+ L  KM D  + P+ 
Sbjct: 251 KDQGRLKNAQDVFQDLLIKGYSLNIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDA 310

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           VTY + IR   + ++  +A++LF +M+ +G+
Sbjct: 311 VTYETNIRALFHKDENEKAEKLFRKMIARGL 341


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L+  +    V ++F+ + S  L  D+Y +S +IN +C+ G V     V
Sbjct: 135 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 194

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPDA-----------------ITYNTIIDGLCK 132
               + +   P+  T+ +LI    K+ + +A                 I +NT+IDG C+
Sbjct: 195 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 254

Query: 133 QGFVDKAKELFLKMK-----------------------------------DKNVKPNVVT 157
           +  VDKA E+ + M+                                   +K V+PN V+
Sbjct: 255 KNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVS 314

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I   C   D  EA+RLF EM   G +P++VT+NV+MD   K G + EA    + M 
Sbjct: 315 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEME 374

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G+ PD ++Y  L+ G C+ G+V+ A  LF  M+  G
Sbjct: 375 KKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG 412



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 26/229 (11%)

Query: 51  HYDTVLSLFKRLNSTGLFPDLYT---HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           H DT   L K+  ++   PD  T    S++++ +CK GRV+H   +L  + R     + +
Sbjct: 46  HLDTAADLLKQAATS--CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNAL 103

Query: 108 TFTSLI----------------KVCKPDAI-----TYNTIIDGLCKQGFVDKAKELFLKM 146
            + SL+                KV + + I     TY  ++DGL     + K + +F +M
Sbjct: 104 CYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEM 163

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K KN+  +V  Y+SVI  +C A +   A  +F E +  G++PN  T+  +++  CK G+M
Sbjct: 164 KSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQM 223

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + A  L+  M   GV  +   +NT++DG+C    V+ A E+ + ME MG
Sbjct: 224 EAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMG 272



 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN M+    +    D  L +   +   G+  D+YT++ L     +  R+     +L  ++
Sbjct: 245 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 304

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
                P+ V++T+LI +                      +P  +TYN ++DG  K+G + 
Sbjct: 305 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 364

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A+    +M+ K + P++ +Y +++ G C     + A RLF EM  +G +PN+V +  ++
Sbjct: 365 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 424

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K G+ +EA  L D M+  G+ PD   Y+ L+
Sbjct: 425 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 459



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L    + K  D V  + K + + G+ P + T++IL++       ++    V   + 
Sbjct: 105 YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMK 164

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
               + DV  ++S              +I+  C+ G V +A E+F +     ++PN  TY
Sbjct: 165 SKNLSGDVYFYSS--------------VINAYCRAGNVRRASEVFDECVGNGIEPNEHTY 210

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I GFC       A+ L  +M  +GV  N + FN ++D  C+   +D+A  +  +M +
Sbjct: 211 GALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEK 270

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+  D +TYNTL  G     R++ AK L   M   G
Sbjct: 271 MGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKG 307



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +   G  P L T++++++ + K G +         + +    PD+ ++ +L+    
Sbjct: 334 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVH--- 390

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C  G VD A  LF +MK +  KPN+V YT++I G        EA +L
Sbjct: 391 -----------GHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 439

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           +  M+  G+ P+   ++ ++  L  + K +
Sbjct: 440 YDNMLGDGLTPDDALYSALVGSLHTDKKQN 469



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+  ++     N   D  L LF+ +   G  P+L  ++ LI+   K GR    F +
Sbjct: 380 PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 439

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPD 119
              +L    TPD   +++L+     D
Sbjct: 440 YDNMLGDGLTPDDALYSALVGSLHTD 465


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 61/283 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   +FN+++  L +++ +D  L LF+++   G  P+ +T  IL+   C+ G V     +
Sbjct: 148 PQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALEL 207

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
           +     SC   + V + +L+ + C+                    PD +T+N+ I  LC+
Sbjct: 208 VNNN-NSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCR 266

Query: 133 QGFVDKAKELFLKMK-DKNV---KPNVVTYTSVIRGFCYA-------------------- 168
            G V +A  +F  M+ D  +   +PNVVT+  +++GFC                      
Sbjct: 267 AGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFD 326

Query: 169 -----NDWN----------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
                N W           EA+ +  EM+ +G++PN  T+N++MD LC+N  + +A  L+
Sbjct: 327 SLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLM 386

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           DLM+++GV PD   Y+TLL G+C  G+V  AK +   M   GC
Sbjct: 387 DLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGC 429



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 37/261 (14%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + D M+      P   ++NIM+  L +N        L   +   G++PD   +S L
Sbjct: 346 EARLVLDEMV-AKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTL 404

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           ++ +C  G+V     VL  ++R+               C+P+  T NT++  L K+G   
Sbjct: 405 LHGYCSRGKVFEAKSVLHEMIRNG--------------CQPNTYTCNTLLHSLWKEGRTL 450

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-------MDQGVQ--- 187
           +A+E+  KM +K  +P+ VT   V+ G C   + ++A  +  EM       +D+G     
Sbjct: 451 EAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFAS 510

Query: 188 ------------PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
                       P+ +T+  +++ LCK G+++EA      M+   +RPD+ TY+T +  F
Sbjct: 511 LINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSF 570

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C  G+++ A  +   ME  GC
Sbjct: 571 CKQGKISSAFRVLKDMERNGC 591



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 44/282 (15%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  + D M+R    P  V+   ++ G  ++ K ++   S+   +   G  P+ YT + 
Sbjct: 380 SDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAK-SVLHEMIRNGCQPNTYTCNT 438

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT---------------------------- 108
           L++   K GR      +L ++   C+ PD VT                            
Sbjct: 439 LLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNG 498

Query: 109 ---------FTSLIKV------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                    F SLI        C PD ITY T+I+GLCK G +++AK+ F++M  KN++P
Sbjct: 499 PTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRP 558

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY + I  FC     + A R+  +M   G    + T+N ++  L  N ++ E   L 
Sbjct: 559 DSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLK 618

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M + G+ PD  TYN ++   C  G+   A  L   M   G
Sbjct: 619 DEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKG 660



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +FN+ML    K+        L + +   G F  L  ++I +     MG + +G ++
Sbjct: 291 PNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWL-----MGLLRNGELL 345

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
             R+         V    + K  +P+A TYN ++DGLC+   +  A+ L   M    V P
Sbjct: 346 EARL---------VLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYP 396

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + V Y++++ G+C      EAK +  EM+  G QPN  T N ++  L K G+  EA  +L
Sbjct: 397 DTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEML 456

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M +   +PD  T N +++G C  G ++ A E+   M + G
Sbjct: 457 QKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNG 498



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 20/244 (8%)

Query: 17  NEALCIFDYMLRMHPS-PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           ++A+  F  +    PS  P +  +N++L    ++     V  L+  + +  + P  YT +
Sbjct: 95  DDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDMLAARVAPQTYTFN 154

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           +LI+  C+     H   +  ++ +              K C P+  T   ++ GLC+ G 
Sbjct: 155 LLIHSLCESRAFDHALQLFEKMPQ--------------KGCCPNEFTLGILVRGLCRAGL 200

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A EL        +  N V Y +++  FC     NEA+RL   M + GV P+VVTFN 
Sbjct: 201 VKQALELVNNNNSCRI-ANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNS 259

Query: 196 IMDELCKNGKMDEASSLL-DLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +  LC+ GK+ EAS +  D+ +   +   RP+  T+N +L GFC  G +  A+ L  +M
Sbjct: 260 RISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETM 319

Query: 252 ESMG 255
           + +G
Sbjct: 320 KKVG 323



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 14/186 (7%)

Query: 63  NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAIT 122
           N +   PD  T++ LIN  CK+GR+           +  F         L K  +PD++T
Sbjct: 517 NVSNCLPDGITYTTLINGLCKVGRLEEA--------KKKF------IEMLAKNLRPDSVT 562

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           Y+T I   CKQG +  A  +   M+       + TY ++I G    N   E   L  EM 
Sbjct: 563 YDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMK 622

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
           ++G+ P++ T+N I+  LC+ GK  +A SLL  M+  G+ P+  ++  L+  F  +    
Sbjct: 623 EKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFK 682

Query: 243 HAKELF 248
            A ELF
Sbjct: 683 VACELF 688



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 22/216 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           + ++N ++  L  N     +  L   +   G+ PD+ T++ +I C C+ G+      +L 
Sbjct: 595 LQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLH 654

Query: 96  RILRSCFTPDVVTFTSLIK--------------------VCKPDAITYNTIIDGLCKQGF 135
            +L    +P+V +F  LIK                    +C      Y+ + + L   G 
Sbjct: 655 EMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQ 714

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +AKELF    D+ +      Y  +I   C      +A  L  +++D+G   +  +F  
Sbjct: 715 LSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMP 774

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGV--RPDAFTYN 229
           ++D L K G   +A  L   M++  +  RP   TY+
Sbjct: 775 VIDGLSKRGNKRQADELAKRMMELELEDRPVDRTYS 810



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDK--NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +++  L + G VD A   F  ++ +  ++ P++  Y  ++R     +       L+ +M+
Sbjct: 83  SMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDML 142

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
              V P   TFN+++  LC++   D A  L + M Q G  P+ FT   L+ G C  G V 
Sbjct: 143 AARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVK 202

Query: 243 HAKEL 247
            A EL
Sbjct: 203 QALEL 207



 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDEAS 210
           P++++   V+    + +D   A   F  +  Q   + P++  +N+++    ++ +    S
Sbjct: 79  PSLISMVRVLAQLGHVDD---AITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVS 135

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            L   M+   V P  +T+N L+   C +   +HA +LF  M   GC
Sbjct: 136 WLYSDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGC 181


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 15/240 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL I   ML     PP   +F  ++  L+K+          + +   G+ PD+ T +++I
Sbjct: 78  ALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMI 137

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
             FCK   +   + +   +++S               C+PD   Y  +IDG CK+  +D+
Sbjct: 138 RGFCKNRMMERAWEIFQEMIKS-------------NRCQPDCFLYGVLIDGYCKELRMDR 184

Query: 139 AKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE-MMDQGVQPNVVTFNVI 196
           A EL  +M+ ++ ++P+VV Y S++ G C +N + EA +   E M+ QG  P VVT+  +
Sbjct: 185 ALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSL 244

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +   CK  KM  A  + + M++  ++P   +Y+ ++DG    GRV  A  +   ME++GC
Sbjct: 245 IRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGC 304



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 26/240 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P V +F +M+    KN+  +    +F+ +  S    PD + + +LI+ +CK  R+     
Sbjct: 128 PDVVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALE 187

Query: 93  VLG--RILRSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIID 128
           +L   R+ R    PDVV + S++                      + C P  +TY ++I 
Sbjct: 188 LLREMRVERR-IQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIR 246

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
           G CK   +  A  ++  M ++ ++P +V+Y+ +I G   A    +A R+  EM   G + 
Sbjct: 247 GACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCEL 306

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           NVV +  ++D LCK+G +D+A +L  +M + G  P+  TY TL+D FC   R   A  LF
Sbjct: 307 NVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLF 366



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 26/263 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN-STGLFPDLYTHS 75
             A  IF  M++ +   P    + +++    K    D  L L + +     + PD+  ++
Sbjct: 147 ERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYN 206

Query: 76  ILINCFCKMGRVSHGFVVLGR--ILRSCFTPDVVTFTSLIK-VCK--------------- 117
            +++  C+  R    +  L    +L+ C +P VVT+TSLI+  CK               
Sbjct: 207 SIVDGLCRSNRFLEAWKFLDETMVLQGC-SPTVVTYTSLIRGACKAKKMKLAVRIWNAML 265

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                P  ++Y+ IIDGL K G V  A  +  +M+    + NVV YT++I G C +   +
Sbjct: 266 ERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLD 325

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           +A  L+  M   G  PN  T+  ++D  C+N + + A  L D  I+     D   Y  ++
Sbjct: 326 DAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFD-HIRDYCPLDVAMYTAVV 384

Query: 233 DGFCLTGRVNHAKELFVSMESMG 255
            G C   R++ A+ LF  M   G
Sbjct: 385 SGLCRERRLDDARALFREMRLAG 407



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++  L K+   D   +L++ +  +G FP+  T++ LI+ FC+  R       LG   
Sbjct: 311 YTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTE---TALG--- 364

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
                     F  +   C  D   Y  ++ GLC++  +D A+ LF +M+   V  +   Y
Sbjct: 365 ---------LFDHIRDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAY 415

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
             ++ G   +    EA R+  E+ D  G   N++T+N ++   C    M     L   M 
Sbjct: 416 NVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCCLESGM----VLFYEMR 471

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           Q G+ PD  TY+ L+D    +G +  A +L   M + G
Sbjct: 472 QRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASG 509



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 55/274 (20%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA    D  + +    P V ++  ++    K K     + ++  +    + P + ++S++
Sbjct: 220 EAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVI 279

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K GRV   +    R++R   T            C+ + + Y T+IDGLCK GF+D
Sbjct: 280 IDGLSKAGRVYDAY----RVVREMETLG----------CELNVVIYTTLIDGLCKSGFLD 325

Query: 138 KAKELFLKMKDKNVKPN----------------------------------VVTYTSVIR 163
            A  L+  MK     PN                                  V  YT+V+ 
Sbjct: 326 DAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLDVAMYTAVVS 385

Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVR 222
           G C     ++A+ LF EM   GV  +   +NV++    ++ + +EA  +L +L    G  
Sbjct: 386 GLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEEAFRILEELGDDPGCV 445

Query: 223 PDAFTYNTLLDGFCL-TGRVNHAKELFVSMESMG 255
            +  TYNT++ G CL +G V     LF  M   G
Sbjct: 446 ANLLTYNTVIAGCCLESGMV-----LFYEMRQRG 474



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 91/200 (45%), Gaps = 21/200 (10%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           AL +FD++      P  V+ +  ++  L + +  D   +LF+ +   G+  D + +++L+
Sbjct: 362 ALGLFDHI--RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLL 419

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC-KQGFVD 137
           +   +  R    F +L  +                  C  + +TYNT+I G C + G V 
Sbjct: 420 HGAFRSERPEEAFRILEELGDD-------------PGCVANLLTYNTVIAGCCLESGMV- 465

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
               LF +M+ + + P+  TY+++I     + +   A  L  EM+  G+ P       ++
Sbjct: 466 ----LFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSPPSGVLGRVV 521

Query: 198 DELCKNGKMDEASSLLDLMI 217
             LC + + D A+ ++++ +
Sbjct: 522 ARLCWSRRGDLAAKVIEMAM 541


>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
 gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  S+FNI + CL K    +    +  +  + G       +  LI    K GR   G   
Sbjct: 227 PDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRY 286

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L ++++     DV ++  LI   CK                    P+ +T+NT+I G CK
Sbjct: 287 LNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCK 346

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V KA+EL   + +  +KP++ T++S+I   C A  +++A   F EM++ G+ PN VT
Sbjct: 347 DGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVT 406

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N+++  LC  G +  +  LL  M + G+ PD F++N L+  FC  G+V  A+++FVSM 
Sbjct: 407 YNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMS 466

Query: 253 SMG 255
           ++G
Sbjct: 467 TLG 469



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 21/211 (9%)

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------ 114
           L  D++++++LI+CFCK   ++   +V   +     +P++VTF +LI             
Sbjct: 295 LVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKAR 354

Query: 115 ---------VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                      KPD  T+++IID LC+    D A   F +M +  + PN VTY  +IR  
Sbjct: 355 ELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSL 414

Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
           C   D   + +L  +M   G+ P++ +FN ++   C+ GK+++A  +   M   G+ P+ 
Sbjct: 415 CLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPNN 474

Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +TY  L+      GR + AK++F SME  GC
Sbjct: 475 YTYGALVKALFELGRCDEAKKMFFSMEVNGC 505



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +F+ ++ CL + + +D  L  F  +   G+ P+  T++ILI   C +G V     +
Sbjct: 367 PDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKL 426

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  + +   +PD+ +F              N +I   C+ G V+KA+++F+ M    + P
Sbjct: 427 LKDMRKDGISPDIFSF--------------NALIQSFCRMGKVEKAEKMFVSMSTLGLIP 472

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N  TY ++++        +EAK++F  M   G  P+  T N+I + L K G  +E  ++ 
Sbjct: 473 NNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLISENLFKQGDFEELQNIA 532

Query: 214 DLMIQHGV 221
            +  + G+
Sbjct: 533 KICSERGI 540



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 35/149 (23%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CKPD  TYN +I G+CK G VD+A  L  +M+      NV TYT++I GFC A   +EA 
Sbjct: 85  CKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAF 144

Query: 176 RLFIEMMDQGVQPNVVT-----------------FNVIMDELCKN---GKM--------- 206
           R+F  M  + V PN  T                 F +++D + K    G++         
Sbjct: 145 RVFETMKLRNVNPNEATIRSLVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCL 204

Query: 207 ------DEASSLLDLMIQHGVRPDAFTYN 229
                  EA +LL  + + G  PD+ T+N
Sbjct: 205 SEKCMPREAGALLRKLGERGYLPDSSTFN 233



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 111/292 (38%), Gaps = 84/292 (28%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +N ++  L K+   D     F+++++    PD +T+++LI+  CK+G V     +
Sbjct: 52  PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRL 111

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           + ++    ++ +V T+T+LI               G C    VD+A  +F  MK +NV P
Sbjct: 112 VKQMEGFGYSANVYTYTNLIY--------------GFCNAKRVDEAFRVFETMKLRNVNP 157

Query: 154 NVVTYTSVIRG----------FCYANDW-------------------------NEAKRLF 178
           N  T  S++ G          F    D+                          EA  L 
Sbjct: 158 NEATIRSLVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALL 217

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR---------------- 222
            ++ ++G  P+  TFN+ M  L K   ++E   +LD  I  G +                
Sbjct: 218 RKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKA 277

Query: 223 -------------------PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                               D F+YN L+D FC    +N A  +F  M+  G
Sbjct: 278 GRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRG 329



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%)

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I    + G     +E+F ++    + P+   Y +VI     +N  + A   F +M   
Sbjct: 24  VLIGSWGRLGLAKYCEEIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSAD 83

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
             +P+  T+N+++  +CK G +DEA  L+  M   G   + +TY  L+ GFC   RV+ A
Sbjct: 84  NCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEA 143

Query: 245 KELFVSME 252
             +F +M+
Sbjct: 144 FRVFETMK 151



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%)

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + +F ++   G+ P+   +N ++D L K+  +D A      M     +PD FTYN L+ G
Sbjct: 39  EEIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHG 98

Query: 235 FCLTGRVNHAKELFVSMESMG 255
            C  G V+ A  L   ME  G
Sbjct: 99  VCKIGVVDEALRLVKQMEGFG 119


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 21/250 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R     P +  F+ M+    ++ + D  L  F  +   GL PD   ++ILI  +C+ G 
Sbjct: 356 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 415

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNT 125
           +S    +   +L+     DVVT+ +++  +CK                    PD+ T   
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK G +  A ELF KMK+K +K +VVTY +++ GF    D + AK ++ +M+ + 
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P  ++F+++++ LC  G + EA  + D MI   ++P     N+++ G+C +G  +  +
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGE 595

Query: 246 ELFVSMESMG 255
                M S G
Sbjct: 596 IFLEKMISEG 605



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 21/252 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR       + + N ++G L +    +    +++ ++ +G+  ++YT +I++N  CK G
Sbjct: 180 LLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDG 239

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
           ++      L  +      PD+VT+ +LI                     K   P   TYN
Sbjct: 240 KMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYN 299

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
           T+I+GLCK G  ++AKE+F +M    + P+  TY S++   C   D  E + +F +M  +
Sbjct: 300 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSR 359

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            V P++V F+ +M    ++G +D+A    + + + G+ PD   Y  L+ G+C  G ++ A
Sbjct: 360 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEA 419

Query: 245 KELFVSMESMGC 256
             L   M   GC
Sbjct: 420 MNLRNEMLQQGC 431



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 15/236 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + ML+       V ++N +L  L K K       LF  +   GLFPD YT +I
Sbjct: 417 SEAMNLRNEMLQ-QGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  CK+G + +   +  ++                K  K D +TYNT++DG  K G +
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKE--------------KRIKLDVVTYNTLLDGFGKVGDI 521

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D AKE++  M  K + P  ++++ ++   C     +EA R++ EM+ + ++P V+  N +
Sbjct: 522 DTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSM 581

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +   C++G   +    L+ MI  G  PD  +YNTL+ GF     ++ A  L   ME
Sbjct: 582 IKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKME 637



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 23/212 (10%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++N +L    K    DT   ++  + S  + P   + SIL+N  C  G +S  F V  
Sbjct: 505 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWD 564

Query: 96  RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
            ++     P V+   S+IK  C+                    PD I+YNT+I G  K+ 
Sbjct: 565 EMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEE 624

Query: 135 FVDKAKELFLKMKDKN--VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            + KA  L  KM++K   + P+V TY S++ GFC  N   EA+ +  +M+++GV P+  T
Sbjct: 625 NMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRST 684

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
           +  +++       + EA    D M+Q G  PD
Sbjct: 685 YTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 29/204 (14%)

Query: 9   GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
           GDI T     A  I+  M+     P P+S F+I++  L    H      ++  + S  + 
Sbjct: 519 GDIDT-----AKEIWADMVSKEILPTPIS-FSILVNALCSKGHLSEAFRVWDEMISKSIK 572

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK---- 117
           P +   + +I  +C+ G  S G + L +++   F PD +++ +LI        + K    
Sbjct: 573 PTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGL 632

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD  TYN+I+ G C++  + +A+ +  KM ++ V P+  TYTS+I GF
Sbjct: 633 VKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGF 692

Query: 166 CYANDWNEAKRLFIEMMDQGVQPN 189
              ++  EA R   EM+ +G  P+
Sbjct: 693 VSQDNLTEAFRFHDEMLQRGFSPD 716


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 15/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++    K +  +TV+ L + +   G+ P++Y+++I I    + GR    + +
Sbjct: 215 PSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKI 273

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++      PDVVT T LI++              LC  G V  AK++F KMK  + KP
Sbjct: 274 LQKMEDEGCKPDVVTNTVLIQI--------------LCDAGRVSDAKDVFWKMKASDQKP 319

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           + VTY +++       D      ++  M   G   NVV +  ++D LC+ G++DEAS + 
Sbjct: 320 DRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVF 379

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M Q G+ P  ++YN+L+ GF    R+NHA ELF  M   G
Sbjct: 380 DQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 21/247 (8%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H   P V S+ I +  L +   ++    + +++   G  PD+ T+++LI   C  GRVS 
Sbjct: 245 HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSD 304

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVC----------------KPDA-----ITYNTIID 128
              V  ++  S   PD VT+ +L+  C                K D      + Y  ++D
Sbjct: 305 AKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVD 364

Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
            LC+ G VD+A ++F +MK K ++P   +Y S+I GF  A+  N A  LF  M   G  P
Sbjct: 365 ALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTP 424

Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           N  T+ + ++   K+G+  +A    +LM   G+ PD    N +L     +GR+  AK +F
Sbjct: 425 NGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVF 484

Query: 249 VSMESMG 255
             ++S+G
Sbjct: 485 HELKSIG 491



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N AL +F++M  +H   P   ++ + +    K+      +  ++ + S G+ PD+   + 
Sbjct: 408 NHALELFNHM-NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNA 466

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------------- 117
           ++    K GR+     V   +      PD +T+T +IK C                    
Sbjct: 467 VLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETR 526

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PD +  N++ID L K G  ++A ++F ++K+ N+ P   TY +++ G        E  
Sbjct: 527 CVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVM 586

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM      PN++T+N ++D LCKNG+++ A  +L  M   G  PD  +YNT L G 
Sbjct: 587 HLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGL 646

Query: 236 CLTGRVNHAKELFVSMESM 254
               R+  A  +F  M+ +
Sbjct: 647 VKEDRLTEAFRIFCQMKKV 665



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 37   SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
             S+N ++  L      D    LF  +   G  PD +T++++++   K  R+     V   
Sbjct: 777  GSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE 836

Query: 97   ILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCKQGF 135
            +    +    VT+ ++I                         P   TY  ++DGL K G 
Sbjct: 837  MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGK 896

Query: 136  VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
            ++ A++LF +M D   KPN   Y  ++ G+  A +  +   LF  M+DQG+ P++ ++ V
Sbjct: 897  IEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTV 956

Query: 196  IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            ++  LC  G+++++ S    + + G+ PD  TYN L+ G   +GR+  A  LF  ME  G
Sbjct: 957  LIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSG 1016



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 21/240 (8%)

Query: 38   SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
            ++N ++  L K+K     + L+ +L S G  P   T+  L++   K G++     +   +
Sbjct: 848  TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907

Query: 98   LRSCFTPDVVTFTSLI----------KVCK-----------PDAITYNTIIDGLCKQGFV 136
            L     P+   +  L+          KVC+           PD  +Y  +I  LC  G +
Sbjct: 908  LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRL 967

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            + +   F ++ +  ++P+++TY  +I G   +    EA  LF +M   G+ PN+ T+N +
Sbjct: 968  NDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSL 1027

Query: 197  MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
            +  L K GK  EA  + + ++++G +P+ FTYN L+ G+ ++G  ++A   +  M   GC
Sbjct: 1028 ILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGC 1087



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 115/262 (43%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  +FD M +     P   S+N ++    K    +  L LF  +N  G  P+ YT+ +
Sbjct: 373 DEASDVFDQM-KQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVL 431

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL----------------------IK 114
            IN + K G           +      PDVV   ++                      I 
Sbjct: 432 FINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIG 491

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
           VC PD ITY  +I    K    D+A ++F +M +    P+V+   S+I     A   NEA
Sbjct: 492 VC-PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEA 550

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
            ++F E+ +  + P   T+N ++  L + GK+ E   LL+ M  +   P+  TYNT+LD 
Sbjct: 551 WKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDC 610

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C  G VN+A  +  +M   GC
Sbjct: 611 LCKNGEVNYALGMLYNMTMKGC 632



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 22   IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
            +FD ML  +   P  + +NI+L       + + V  LF+ +   G+ PD+ ++++LI   
Sbjct: 903  LFDEMLD-YGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGAL 961

Query: 82   CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CKPDAITYNTIIDGLCKQGFVDKAK 140
            C  GR++                    F  L ++  +PD ITYN +I GL + G +++A 
Sbjct: 962  CTAGRLNDSLSY---------------FRQLTELGLEPDLITYNLLIHGLGRSGRLEEAV 1006

Query: 141  ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
             LF  M+   + PN+ TY S+I          EA +++ E++  G +PNV T+N ++   
Sbjct: 1007 SLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGY 1066

Query: 201  CKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
              +G  D A +    MI  G  P++ TY  L
Sbjct: 1067 SVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 22/259 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F  M      P  V+   ++  C   N    +V+ ++  + + G   ++  ++ 
Sbjct: 303 SDAKDVFWKMKASDQKPDRVTYITLLDKC-GDNGDSRSVIEIWNAMKADGYNDNVVAYTA 361

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           +++  C++GRV     V  ++ +    P   ++ SLI                       
Sbjct: 362 VVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421

Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P+  TY   I+   K G   KA + +  MK K + P+VV   +V+     +     AK
Sbjct: 422 PTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAK 481

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           R+F E+   GV P+ +T+ +++    K    DEA  +   MI+    PD    N+L+D  
Sbjct: 482 RVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTL 541

Query: 236 CLTGRVNHAKELFVSMESM 254
              GR N A ++F  ++ M
Sbjct: 542 YKAGRGNEAWKIFHELKEM 560



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 34   PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
            P + S+ +++G L      +  LS F++L   GL PDL T+++LI+   + GR+     +
Sbjct: 949  PDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSL 1008

Query: 94   LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
               + +S   P++ T              YN++I  L K+G   +A +++ ++     KP
Sbjct: 1009 FNDMEKSGIAPNLYT--------------YNSLILYLGKEGKAAEAGKMYEELLKNGWKP 1054

Query: 154  NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            NV TY ++I G+  +   + A   + +M+  G  PN  T+  + ++L
Sbjct: 1055 NVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQL 1101



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 14/240 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           NEAL      +    S    SSF+ ++  + K    +  +   + +  + +  D +  S 
Sbjct: 687 NEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSP 746

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI   CK  +      +            V  F SL    K    +YN +I GL  +  +
Sbjct: 747 LIRHLCKSKKALEAHEL------------VKKFESLGVSLKTG--SYNALICGLVDENLI 792

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A+ LF +MK     P+  TY  ++     +    +  ++  EM  +G +   VT+N I
Sbjct: 793 DVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTI 852

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +  L K+  + EA  L   ++  G  P   TY  LLDG    G++  A++LF  M   GC
Sbjct: 853 ISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGC 912



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 112/280 (40%), Gaps = 58/280 (20%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP + ++N +L CL KN   +  L +   +   G  PDL +++  ++   K  R++  F 
Sbjct: 598 PPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFR 657

Query: 93  VLGRILRSCFTPDVVTFTSLIKV----------------------CKPDAITYNTIIDGL 130
           +  + ++    PD  T  +++                         K D  +++++++G+
Sbjct: 658 IFCQ-MKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGI 716

Query: 131 CKQGFVDK-----------------------------------AKELFLKMKDKNVKPNV 155
            K+  ++K                                   A EL  K +   V    
Sbjct: 717 LKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKT 776

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            +Y ++I G    N  + A+ LF EM   G  P+  T+N+I+D + K+ ++++   +   
Sbjct: 777 GSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKE 836

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M   G      TYNT++ G   +  +  A +L+  + S G
Sbjct: 837 MHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEG 876



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
           ++ K +  T+ TI   L  +G +  A      MK+  +  N  TY  +I     +    E
Sbjct: 141 QIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDRE 200

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  ++  M   G+ P+V T++V+M    K   ++    LL  M  HGV+P+ ++Y   + 
Sbjct: 201 AMEVYKVMATDGIVPSVRTYSVLMLAFGKR-DVETVVWLLREMEDHGVKPNVYSYTICIR 259

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                GR   A ++   ME  GC
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGC 282



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 17   NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            N++L  F  +  +   P  ++ +N+++  L ++   +  +SLF  +  +G+ P+LYT++ 
Sbjct: 968  NDSLSYFRQLTELGLEPDLIT-YNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNS 1026

Query: 77   LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
            LI    K G+ +    +   +L++ +              KP+  TYN +I G    G  
Sbjct: 1027 LILYLGKEGKAAEAGKMYEELLKNGW--------------KPNVFTYNALIGGYSVSGST 1072

Query: 137  DKAKELFLKMKDKNVKPNVVTYTSV 161
            D A   + +M      PN  TY  +
Sbjct: 1073 DNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%)

Query: 124 NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
           N +++ +   G V    ++F  M+ + VK NV T+ ++ R          A      M +
Sbjct: 116 NYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKE 175

Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            G+  N  T+N ++  L K+G   EA  +  +M   G+ P   TY+ L+  F
Sbjct: 176 AGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAF 227


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + NIM+  L K +  D   S+F  L+     PD  T   LI+   + GRV   + +
Sbjct: 445 PNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSL 504

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L S   P+VV +TSLI                     + C PD +  N+ +D + K
Sbjct: 505 YEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFK 564

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+K + LF ++K + + P+V +Y+ +I G   A    E  +LF EM +QG+  +V+ 
Sbjct: 565 AGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLA 624

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  CK+GK+D+A  LL+ M   G++P   TY +++DG     R++ A  LF   +
Sbjct: 625 YNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 253 SMG 255
           S+G
Sbjct: 685 SIG 687



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +   N  + C+ K    +   +LF+ + + GL PD+ ++SILI+   K G     + +
Sbjct: 550 PDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKL 609

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +       DV              + YNT+IDG CK G VDKA +L  +MK K ++P
Sbjct: 610 FYEMKEQGLHLDV--------------LAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQP 655

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
            VVTY SV+ G    +  +EA  LF E    GV  NVV ++ ++D   K G++DEA  +L
Sbjct: 656 TVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLIL 715

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + ++Q G+ P+++T+N LLD       ++ A+  F +M+++ C
Sbjct: 716 EELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S++I++  L K         LF  +   GL  D+  ++ +I+ FCK G+V   + +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +      P VVT              Y +++DGL K   +D+A  LF + K   V  
Sbjct: 645 LEEMKTKGLQPTVVT--------------YGSVVDGLAKIDRLDEAYMLFEEAKSIGVDL 690

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVV Y+S+I GF      +EA  +  E+M +G+ PN  T+N ++D L K  ++DEA    
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             M      P+A TY+ +++G C+  + N A   +  M+  G
Sbjct: 751 QNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQG 792



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 14/223 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  LAK    D    LF+   S G+  ++  +S LI+ F K+GR+   +++
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +++   TP+              + T+N ++D L K   +D+A+  F  MK+    P
Sbjct: 715 LEELMQKGLTPN--------------SYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSP 760

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY+ +I G C    +N+A   + EM  QG++PN +T+  ++  L K G + EA  L 
Sbjct: 761 NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLF 820

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           D     G  PD+  YN +++G     +   A  +F      GC
Sbjct: 821 DRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGC 863



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  + + M+R     P  S++  ++G L+     D +L+LF ++   G   +++  + L
Sbjct: 186 EAFGVIE-MMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTL 244

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +  F + GR+     +L  +  + FT D+V               YN  ID   K G VD
Sbjct: 245 VRVFAREGRIDAALSLLDEMKSNSFTADLVL--------------YNVCIDCFGKVGKVD 290

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A + F +MK + + P+ VTYT++I   C A   +EA  LF E+      P V  +N ++
Sbjct: 291 MAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMI 350

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
                 GK DEA SLL+   + G  P    YN +L      G+V  A
Sbjct: 351 MGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 397



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 20/254 (7%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F + ++     P   ++  ++G L K +  D  + LF+ L+     P +Y ++ +I  + 
Sbjct: 295 FFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYG 354

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------------KVCKPDAIT 122
             G+    + +L R  R    P V+ +  ++                    +   P+  T
Sbjct: 355 SAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTT 414

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           YN +ID LCK G ++ A ++   MK+  + PN++T   +I   C A   +EA  +F+ + 
Sbjct: 415 YNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLD 474

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
            +   P+  TF  ++D L + G++D+A SL + M+     P+   Y +L+  F   GR  
Sbjct: 475 HKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKE 534

Query: 243 HAKELFVSMESMGC 256
              +++  M   GC
Sbjct: 535 DGHKIYKEMVHRGC 548



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 21/261 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A   F ++ R          +N  L  +A+ ++ D +  + + ++  G     +    
Sbjct: 114 NVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVE 173

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC----KPDAIT---------- 122
           L+  F K  ++   F V+  + +  F P    +T+LI       +PD +           
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  + T++    ++G +D A  L  +MK  +   ++V Y   I  F      + A 
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           + F EM  QG+ P+ VT+  ++  LCK  ++DEA  L + +  +   P  + YNT++ G+
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 236 CLTGRVNHAKELFVSMESMGC 256
              G+ + A  L    +  GC
Sbjct: 354 GSAGKFDEAYSLLERQKRKGC 374



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  I + +++   +P   + +N +L  L K +  D     F+ + +    P+  T+SI
Sbjct: 709 DEAYLILEELMQKGLTPNSYT-WNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSI 767

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           +IN  C + + +  FV    + +                 KP+ ITY T+I GL K G V
Sbjct: 768 MINGLCMIRKFNKAFVFWQEMQKQGL--------------KPNNITYTTMIAGLAKAGNV 813

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A+ LF + K     P+   Y ++I G   AN   +A  +F E   +G + N  T  V+
Sbjct: 814 MEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVL 873

Query: 197 MDELCKNGKMDEAS---SLLDLMI--QHGVR 222
           +D L K   +++A+   ++L  M   QH  R
Sbjct: 874 LDALHKADCLEQAAIVGAVLREMAKSQHATR 904


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 33/267 (12%)

Query: 16  PNEALCIFDYM--LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  +L +F  +  LR+HP+     +FN+++            L+    +   GL PD  T
Sbjct: 189 PQASLDVFRSLIELRLHPN---HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVT 245

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------ 115
           ++ L+N  C+ G +     +L R+ R    P   T+ +L+                    
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMT 305

Query: 116 ---CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK-PNVVTYTSVIRGFCYANDW 171
               +PD  TYN +  GLC+ G VD+A  L  +M+      P+VVTY +++   C+   W
Sbjct: 306 AYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDA-CF--KW 362

Query: 172 ---NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
              ++A RL  EM D+GV+P +VT N+++  LCK GK++EA   L+ + + G+ PD  TY
Sbjct: 363 RCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITY 422

Query: 229 NTLLDGFCLTGRVNHAKELFVSMESMG 255
           NTL+D +C  G V  A  L   M   G
Sbjct: 423 NTLIDAYCKAGNVAKAFTLMDEMVGKG 449



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 56/295 (18%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA  + D M R+  + P V ++N ++    K +     L L + +   G+ P L TH+I
Sbjct: 330 DEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNI 389

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           ++   CK G++      L +I      PDV+T+ +LI                     K 
Sbjct: 390 VVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449

Query: 116 CKPDAITYNTIIDGLCK----------------QGFV-------------------DKAK 140
            K D  T NT++  LCK                +GFV                   + A 
Sbjct: 450 LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPAL 509

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
            L+ +M ++ + P++ TY ++I+G C      EA     E +++G+ P+  T+N+I+   
Sbjct: 510 RLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAY 569

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           CK G ++ A    + M+++  +PD  T NTL++G CL G+++ A +LF S    G
Sbjct: 570 CKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L    +        +L  R+   G+ P   T++ L++ F ++G +     V
Sbjct: 241 PDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKV 300

Query: 94  LGRILRSCFTPDVVTFTSL-IKVCK---------------------PDAITYNTIIDGLC 131
           +  +    F PD+ T+  L + +C+                     PD +TYNT++D   
Sbjct: 301 VESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACF 360

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K      A  L  +M+DK VKP +VT+  V++  C      EA     ++ ++G+ P+V+
Sbjct: 361 KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVI 420

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+N ++D  CK G + +A +L+D M+  G++ D FT NT+L   C   R   A+EL  S 
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 252 ESMG 255
              G
Sbjct: 481 PQRG 484



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + + NI++  L K    +  L   +++   GL PD+ T++ LI+ +CK G V+  F +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 94  LGRIL-----------------------------------RSCFTPDVVTFTSLI----- 113
           +  ++                                   +  F PD V++ +++     
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
                           +   P   TYNT+I GLC+   + +A +   +  +K + P+  T
Sbjct: 502 EYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETT 561

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y  +I  +C   D   A R   +M++   +P+VVT N +M+ LC +GK+D+A  L +  +
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G + D  TYNTL+   C  G V+ A   F  ME  G
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKG 659



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 130/278 (46%), Gaps = 55/278 (19%)

Query: 16  PNEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 73
           P  AL ++D M+  ++ PS   +S++N ++  L + +     +         GL PD  T
Sbjct: 505 PEPALRLWDQMIERKLIPS---ISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETT 561

Query: 74  HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQ 133
           ++I+I+ +CK G + + F    +++ + F PDVVT       C       NT+++GLC  
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVT-------C-------NTLMNGLCLH 607

Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           G +DKA +LF    +K  K +V+TY ++I+  C   D + A   F +M  +G+QP+  T+
Sbjct: 608 GKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667

Query: 194 NVIMDELCKNGKMDEASSLLDLMI-------------------------QHGVRPDA--- 225
           NV++  L + G+ +EA ++L  +                          +H  +P+A   
Sbjct: 668 NVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESS 727

Query: 226 --------FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
                    TY   L+G C  G++  AK +   M   G
Sbjct: 728 EKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   S+  ++    K  + +  L L+ ++    L P + T++ LI   C+M R+      
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L   +     PD                TYN II   CK+G ++ A     KM + + KP
Sbjct: 547 LNEFVEKGLVPD--------------ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKP 592

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +VVT  +++ G C     ++A +LF   +++G + +V+T+N ++  +CK G +D A    
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFF 652

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           D M   G++PDAFTYN +L      GR   A  +   +   G
Sbjct: 653 DDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 27/242 (11%)

Query: 18  EALCIFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           EA  +   M R  + P+ P   ++N ++   A+         + + + + G  PDL T++
Sbjct: 261 EARALLARMKRDGIAPTQP---TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYN 317

Query: 76  ILINCFCKMGRVSHGFVVLGRILR-SCFTPDVVTFTSLIKVC------------------ 116
           +L    C+ G+V   F +   + R     PDVVT+ +L+  C                  
Sbjct: 318 VLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRD 377

Query: 117 ---KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              KP  +T+N ++  LCK+G +++A     K+ ++ + P+V+TY ++I  +C A +  +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A  L  EM+ +G++ +  T N ++  LCK  + ++A  LL    Q G  PD  +Y T++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 234 GF 235
            +
Sbjct: 498 AY 499


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 21/222 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            +++F  + +    PD + ++ +++  C+ GR     V+L   + + F P++V + +LI 
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 114 ------------KV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                       KV        C P+  TY  +I GLCK G V++A  LF +M +  ++P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTYT++I+G C       A RL   M   G+ PN  TF+V++D LCK  K++EA   L
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFL 340

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++ GV+ +   Y +L+DG C TG+++ A EL   M S G
Sbjct: 341 GSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L K+   +  + LF R+   GL P++ T++ LI   C  G +   F +
Sbjct: 245 PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +  +   P+  TF+ LI                     K  K + + Y ++IDGLCK
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A EL  KM  +   P+  +Y+S+I G C     ++A  +  +MM++G+Q + VT
Sbjct: 365 TGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVT 424

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +I+DEL +    +    + D MI  G+ PD  TY   +  +C  GR+  A+ + V M 
Sbjct: 425 YTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMV 484

Query: 253 SMG 255
             G
Sbjct: 485 DRG 487



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+   N +L  LA+++ +  + SL  R+ +     +L T++ LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQH 94

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L +   PD   +TS +                     + C   A TY  ++ GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A  +F+ M+  +  P+   Y +++ G C A    EA+ L  E M  G +PN+V 
Sbjct: 155 AGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  C  G+M+ A  + + M  +   P+  TY  L+ G C +G+V  A  LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 253 SMG 255
             G
Sbjct: 275 EAG 277



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 57/272 (20%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A+ +F  M+     P  V ++  ++       H      L   + + GL P+ +T S+
Sbjct: 264 ERAMVLFSRMVEAGLEPN-VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK  +V    + LG +++     + V +TSLI  +CK                  
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 118 --PDAITYNTIIDGLCKQGFVDKA-----------------------------------K 140
             PDA +Y+++IDGLC+Q  + +A                                   K
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPK 442

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           ++F KM    + P++VTYT  +R +C      +A+ + ++M+D+GV PN+VT+N ++   
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
              G + +A S  ++M+  G +P+  +Y  LL
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 33/248 (13%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++  L K    D    L +++ S G  PD +++S LI+  C+  ++S   ++L  ++
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
                   VT+T +I                         PD +TY   +   C++G ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+ + ++M D+ V PN+VTY ++IRG+      ++A   F  M+ +G +PN  ++ V++
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534

Query: 198 D------------ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
                        ++ K   M +   LL+ + +  +   A  Y+  +   C   R+  AK
Sbjct: 535 RLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAK 594

Query: 246 ELFVSMES 253
             F+ M++
Sbjct: 595 HFFMGMQN 602



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 3/227 (1%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M+    +P  V+ + + +    +    +   S+  ++   G+FP+L T++ LI  +
Sbjct: 444 IFDKMIATGINPDIVT-YTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
             +G VS  F     ++   + P+  ++T L+++    + + N++   + K   +   + 
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSV--DIWKIADMKDLQV 560

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           L   + ++ +      Y+  IR  C  +   EAK  F+ M +  + P+   +  I+D  C
Sbjct: 561 LLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCC 620

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +   + +A +LLD M + G  P   +Y  ++   C  G    AKE+F
Sbjct: 621 RLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVF 667



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P     ++  + CL +    +     F  + +  L P    ++ +I+C C++  ++    
Sbjct: 571 PLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALT 630

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  + +S + P + +              Y  II  LC+ G    AKE+F  +  K   
Sbjct: 631 LLDSMTKSGYLPHLES--------------YRIIISSLCEGGNFRTAKEVFGDLLLKESN 676

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
            + + +  +I G        E   L   M + G QP+     +I  E+    ++ E
Sbjct: 677 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQE 732



 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P    +  ++ C  + K     L+L   +  +G  P L ++ I+I+  C+ G       V
Sbjct: 607 PSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEV 666

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
            G +L              +K    D I +  +I GL ++G V +   L   MK+   +P
Sbjct: 667 FGDLL--------------LKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQP 712

Query: 154 NVVTYTSVIRGFCYANDWNEAKR 176
           +      +       N+  E  R
Sbjct: 713 SNTINAMITGEITVTNEVQEIAR 735


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
           F  + R H    P  +   +L  L K K++  V   +K +   G    LY  +IL++ FC
Sbjct: 88  FFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC 147

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAI 121
           K G +     V   I +    P VV+F +L+                        +PD  
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY+ +I+GLCK+  +D+A ELF +M D  + PN VT+T++I G C     + A  ++ ++
Sbjct: 208 TYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQL 267

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           + QG  P+++T+N ++  LCK G + +A  L+D M    ++PD  TY TL+DG C  G +
Sbjct: 268 LSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDL 327

Query: 242 NHAKE 246
             A E
Sbjct: 328 ETAFE 332



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++++G+ PD+YT+S+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              +L +   P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A      M+ + ++ + V 
Sbjct: 289 KGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+  +A  +L  M+  G++PD  TY  +++ FC  G V    +L   M 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMX 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GR
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           V     +  ++L   F+PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 VDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A E   +M  +N++ + V YT++I G C      +A+++   M+  G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK G +   S LL  M + G  P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVP 414



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 83/133 (62%)

Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
           +N ++   CK+G +  A+ +F  +    ++P+VV++ +++ G+    D +E  RL   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH 198

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
             GVQP+V T++V+++ LCK  KMDEA+ L + M+ +G+ P+  T+ TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 243 HAKELFVSMESMG 255
            A E++  + S G
Sbjct: 259 LAMEIYKQLLSQG 271



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 98  LRSCFTPDVVTFTSLIKVCKPDAITYNT---IIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
           L S F  D + F  L +  K   + ++T   +++ L K  +       + ++ +     +
Sbjct: 77  LESGFIRDAIEFFRLTREHKF-WVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPAS 135

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           +  +  ++  FC   +   A+ +F  +   G++P+VV+FN +M    + G +DE   L  
Sbjct: 136 LYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKS 195

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            M   GV+PD +TY+ L++G C   +++ A ELF  M
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEM 232


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 21/235 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++AL + D ML      P   SFN  L  L + + +  V  L  ++          T +I
Sbjct: 399 DDALMLLDSML----CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNI 454

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LI+  C+ G V+H   V  ++ +   TPD+VT++SL              I+G  +QG V
Sbjct: 455 LIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSL--------------INGFSEQGLV 500

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A ELF  M     KP++ +Y +V++G C A  W +A  L   M  +   PN +TFN++
Sbjct: 501 ESAIELFQSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNIL 557

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++ LC+ G  D A  +   M ++G  PD FTYN L++GF   GR++ A  L  +M
Sbjct: 558 INSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM 612



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 17/221 (7%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
           P  P   ++N +L  L   K ++    L + +      P+  T +  I  FC+ G + H 
Sbjct: 205 PVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHA 264

Query: 91  FVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
             +L R+ R   TPDVV               Y+T+++G  +QG VD A  L   M    
Sbjct: 265 VQLLERMPRYGCTPDVVI--------------YSTLVNGFSEQGRVDDALVLLNTML--- 307

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            KPN V Y + ++G C A  W +   L  EM+ +   PN  TF+++   LC++G +D A 
Sbjct: 308 CKPNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAM 367

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +++ M ++G RPD   YNTL++ F   GRV+ A  L  SM
Sbjct: 368 EVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSM 408



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 27/244 (11%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP  ++F+++  CL ++   D  + + +++   G  PD+  ++ LIN F + GRV    +
Sbjct: 344 PPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALM 403

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLC 131
           +L  +L     PD ++F + +K +C+ +                     +T+N +ID LC
Sbjct: 404 LLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLC 460

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           + G V+ A E+F +M      P++VTY+S+I GF        A  LF  M     +P++ 
Sbjct: 461 QHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM---PCKPDIF 517

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           ++N ++  LC+  + ++A  L+  M +    P+  T+N L++  C  G  + A E+F  M
Sbjct: 518 SYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQM 577

Query: 252 ESMG 255
              G
Sbjct: 578 PEYG 581



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 19/220 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
            PP V + NI++  L  ++       +   L  +G   D  +H+ L+  +C+ GR++   
Sbjct: 106 EPPAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLVAGYCRDGRLADAE 164

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
            VL    +     +VVT+T+LI              +G C+ G +  A  L   M    V
Sbjct: 165 RVL-EAAKVSGAANVVTYTALI--------------NGYCRSGRLADALNLIASMP---V 206

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
            P+  TY +V++G C A  W +A+ L  EM+     PN VTF   +   C+NG +D A  
Sbjct: 207 APDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQ 266

Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           LL+ M ++G  PD   Y+TL++GF   GRV+ A  L  +M
Sbjct: 267 LLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM 306



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 56/209 (26%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +FNI++  L ++   +  + +F+++      PD+ T+S LIN F + G V     +   +
Sbjct: 451 TFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM 510

Query: 98  LRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFV 136
              C  PD+ ++ +++K                      C P+ IT+N +I+ LC++GF 
Sbjct: 511 --PC-KPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFA 567

Query: 137 DKAKELFLKMKD--------------------------------KNVKPNVVTYTSVIRG 164
           D+A E+F +M +                                 + KP+ ++Y S ++G
Sbjct: 568 DRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMSCKPDAISYNSTLKG 627

Query: 165 FCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
            C A  W EA+ +  EM+ +   PN VTF
Sbjct: 628 LCRAERWKEAEEIVAEMLRKKCPPNEVTF 656



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P  I  N +I  LC    +  A+ +   +K+     + V++ +++ G+C      +A+R+
Sbjct: 108 PAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLVAGYCRDGRLADAERV 166

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
            +E        NVVT+  +++  C++G++ +A   L+L+    V PD +TYNT+L G C 
Sbjct: 167 -LEAAKVSGAANVVTYTALINGYCRSGRLADA---LNLIASMPVAPDTYTYNTVLKGLCG 222

Query: 238 TGRVNHAKELFVSMESMGC 256
             +   A+EL   M    C
Sbjct: 223 AKQWEKAEELMEEMIRNNC 241



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
             +R      D + A RL +  M     P V+  N+++ +LC + ++ +A  +LD + + 
Sbjct: 81  QTLRRLVQLEDLDAALRL-VGSMPSSEPPAVIACNILIKKLCAHRRLADAERVLDALKES 139

Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           G   DA ++NTL+ G+C  GR+  A+ +  + +  G
Sbjct: 140 G-SADAVSHNTLVAGYCRDGRLADAERVLEAAKVSG 174


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++ I++  L+  +    V ++F+ + S  L  D+Y +S +IN +C+ G V     V
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 270

Query: 94  LGRILRSCFTPDVVTFTSLI----KVCKPDA-----------------ITYNTIIDGLCK 132
               + +   P+  T+ +LI    K+ + +A                 I +NT+IDG C+
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330

Query: 133 QGFVDKAKELFLKMK-----------------------------------DKNVKPNVVT 157
           +  VDKA E+ + M+                                   +K V+PN V+
Sbjct: 331 KNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVS 390

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           YT++I   C   D  EA+RLF EM   G +P++VT+NV+MD   K G + EA    + M 
Sbjct: 391 YTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEME 450

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + G+ PD ++Y  L+ G C+ G+V+ A  LF  M+  G
Sbjct: 451 KKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRG 488



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 26/229 (11%)

Query: 51  HYDTVLSLFKRLNSTGLFPDLYT---HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVV 107
           H DT   L K+  ++   PD  T    S++++ +CK GRV+H   +L  + R     + +
Sbjct: 122 HLDTAADLLKQAATS--CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNAL 179

Query: 108 TFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
            + SL+                        +P   TY  ++DGL     + K + +F +M
Sbjct: 180 CYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEM 239

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K KN+  +V  Y+SVI  +C A +   A  +F E +  G++PN  T+  +++  CK G+M
Sbjct: 240 KSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQM 299

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + A  L+  M   GV  +   +NT++DG+C    V+ A E+ + ME MG
Sbjct: 300 EAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMG 348



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 21/215 (9%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           FN M+    +    D  L +   +   G+  D+YT++ L     +  R+     +L  ++
Sbjct: 321 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 380

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
                P+ V++T+LI +                      +P  +TYN ++DG  K+G + 
Sbjct: 381 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 440

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           +A+    +M+ K + P++ +Y +++ G C     + A RLF EM  +G +PN+V +  ++
Sbjct: 441 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
             L K G+ +EA  L D M+  G+ PD   Y+ L+
Sbjct: 501 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALV 535



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N +L    + K  D V  + K + + G+ P + T++IL++       ++    V   + 
Sbjct: 181 YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMK 240

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
               + DV  ++S              +I+  C+ G V +A E+F +     ++PN  TY
Sbjct: 241 SKNLSGDVYFYSS--------------VINAYCRAGNVRRASEVFDECVGNGIEPNEHTY 286

Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
            ++I GFC       A+ L  +M  +GV  N + FN ++D  C+   +D+A  +  +M +
Sbjct: 287 GALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEK 346

Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            G+  D +TYNTL  G     R++ AK L   M   G
Sbjct: 347 MGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKG 383



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           LF+ +   G  P L T++++++ + K G +         + +    PD+ ++ +L+    
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVH--- 466

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
                      G C  G VD A  LF +MK +  KPN+V YT++I G        EA +L
Sbjct: 467 -----------GHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 515

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
           +  M+  G+ P+   ++ ++  L  + K +
Sbjct: 516 YDNMLGDGLTPDDALYSALVGSLHTDKKQN 545



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + S+  ++     N   D  L LF+ +   G  P+L  ++ LI+   K GR    F +
Sbjct: 456 PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 515

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPD 119
              +L    TPD   +++L+     D
Sbjct: 516 YDNMLGDGLTPDDALYSALVGSLHTD 541


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E   + D M   H   P   +++I+   L +     T+LSLF      G+    YT SI
Sbjct: 281 DETRALMDEMAS-HSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSI 339

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           L+N  CK G+V+    V   ++ +   P  V + +LI                     + 
Sbjct: 340 LLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
            +PD ITYN +I+GLCK   V KA++L ++M+   V P+V T+ ++I  +  A    +  
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M  +G++ +V++F  ++   CKNGK+ EA ++LD MI   V P+A  YN+++D +
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 236 CLTGRVNHAKELFVSMESMG 255
             +G    A  L   M++ G
Sbjct: 520 IESGDTEQALLLVEKMKNSG 539



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 12/216 (5%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +SS N++L  L     +  V + F  L + G  PD +  + ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L R+ RS   P             PDA +YN +I GL + G    A ++F +M D  V P
Sbjct: 180 LRRMGRSEGAP------------PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAP 227

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           N +TY ++I G     D     RL  +M+  G +PNVVT+NV++  LC+ G+MDE  +L+
Sbjct: 228 NRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALM 287

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           D M  H + PD FTY+ L DG   TG       LF 
Sbjct: 288 DEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFA 323



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 22/254 (8%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A CIF+ M   H  P  ++ +N ++  L K +       L   +  +G+ P + T + LI
Sbjct: 388 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK-------------------- 117
           + +   G++   F VL  + +     DV++F S++K  CK                    
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 506

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           P+A  YN+IID   + G  ++A  L  KMK+  V  ++VTY  +++G C ++  +EA+ L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              + +QG++P+VV++N I+   C  G  D+A  LL  M ++G+RP   T +TL+     
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALAS 626

Query: 238 TGRVNHAKELFVSM 251
            GRV+  + L+  M
Sbjct: 627 AGRVHDMECLYQQM 640



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 15/236 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           AL +   M R   +PPP + S+N+++  L ++      L +F  +   G+ P+  T++ +
Sbjct: 176 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTM 235

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           I+   K G +  GF +  ++L     P            KP+ +TYN ++ GLC+ G +D
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHD--GP------------KPNVVTYNVLLSGLCRTGRMD 281

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           + + L  +M   ++ P+  TY+ +  G     +      LF E + +GV     T ++++
Sbjct: 282 ETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
           + LCK+GK+ +A  + ++++  G+ P    YNTL++G+C    +  A  +F  M+S
Sbjct: 342 NGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS 397



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 104/235 (44%), Gaps = 23/235 (9%)

Query: 24  DYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           D ++ M  S   P V +FN ++         +   ++   +   G+  D+ +   ++  F
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
           CK G++     +L  ++     P+   + S+I                            
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASI 544

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           +TYN ++ GLC+   +D+A+EL   ++++ ++P+VV+Y ++I   C   D ++A  L  E
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           M   G++P + T + ++  L   G++ +   L   M+   V P +  Y  ++D +
Sbjct: 605 MNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+ I D M+    +P     +N ++    ++   +  L L +++ ++G+   + T+++L
Sbjct: 492 EAVAILDDMIYKDVAPN-AQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLL 550

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           +   C+  ++                 + + +T   +  +PD ++YNTII   C +G  D
Sbjct: 551 LKGLCRSSQIDEA--------------EELIYTLRNQGLRPDVVSYNTIISACCNKGDTD 596

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA EL  +M    ++P + T  +++     A   ++ + L+ +M+ + V+P+   + +++
Sbjct: 597 KALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMV 656

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPD 224
           D   +     + +SL   M + G+  D
Sbjct: 657 DAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    K    D    L   + ++G+ PD+YTHS+LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
              +L +   P+ VTFT              T+IDG CK G VD A E++ +M  +++ P
Sbjct: 229 FDEMLBNGLVPNGVTFT--------------TLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           +++TY ++I G C   D  +   L  EM  +G++P+ +T+  ++D  CK G ++ A    
Sbjct: 275 DLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYR 334

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             MI+  +R D   Y  L+ G C  GR   A+++   M S+G
Sbjct: 335 KRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG 376



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   ++  L K K++  V   ++     G    LY  +IL++ FCK G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL----IKV-----------------CKPDAITYN 124
            +     V   I +    P VV+F +L    IK+                  +PD  T++
Sbjct: 151 EIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A ELF +M B  + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +   L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V + ++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
             ++L     PD++T+ +LI                     K  KPD ITY T+IDG CK
Sbjct: 264 YRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ +   YT++I G C      +A+++  EM+  G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P+  T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 25/224 (11%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTHS 75
           +A  +FD +LR     P V S+NI+L  L         L L   +   G    PD+ ++S
Sbjct: 35  DARHVFDELLR--RGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            +IN F K G        L ++L    +P+VVT              YN+II  LCK   
Sbjct: 93  TVINGFFKEGD-------LDKMLDQRISPNVVT--------------YNSIIAALCKAQT 131

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           VDKA E+   M    V P+ +TY S++ GFC +    EA     +M   GV+P+VVT+N 
Sbjct: 132 VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNS 191

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           +MD LCKNG+  EA  + D M + G++PD  TY TLL G+   G
Sbjct: 192 LMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKG 235



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 28/257 (10%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA+ +F   +R     P V ++N ++  L KN        +F  +   GL PD+ T+ 
Sbjct: 167 PKEAI-VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 225

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
            L+  +   G +     +L  ++R+   P+   F+ L+                     +
Sbjct: 226 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 285

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
              P+A+TY T+ID LCK G V+ A   F +M D+ ++P+ + Y S+I   C  + W +A
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
           + LF+EM+D+G+  + + FN I+D  CK G++ E+  L DLM++ GV+PD  T    L  
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFL-- 403

Query: 235 FCLTGRVNHAKELFVSM 251
               G       LFV++
Sbjct: 404 ----GSARRDYSLFVNI 416



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 23  FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
            D ML    SP  V+ +N ++  L K +  D  + +   +  +G+ PD  T++ +++ FC
Sbjct: 104 LDKMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 83  KMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAI 121
             G+     V L ++      PDVVT+ SL+                     +  KPD  
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           TY T++ G   +G + +   L   M    + PN   ++ ++  +       EA  +F +M
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             QG+ PN VT+  ++D LCK+G++++A    + MI  G+RPD+  YN+L+   C+  + 
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342

Query: 242 NHAKELFVSMESMG 255
             A+ELF+ M   G
Sbjct: 343 EKAEELFLEMLDRG 356



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 58  LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
           +F  L   G+ PD+++++IL+N  C   R      +L  +                  C 
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGD------------CP 85

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
           PD ++Y+T+I+G  K+G +DK       M D+ + PNVVTY S+I   C A   ++A  +
Sbjct: 86  PDVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
              M+  GV P+ +T+N I+   C +G+  EA   L  M   GV PD  TYN+L+D  C 
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 238 TGRVNHAKELFVSMESMG 255
            GR   A+++F SM   G
Sbjct: 199 NGRCTEARKIFDSMTKRG 216



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 122/314 (38%), Gaps = 82/314 (26%)

Query: 22  IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + D M+R  +HP+      F+I++   AK +  +  + +F ++   GL P+  T+  +I+
Sbjct: 243 LLDLMVRNGIHPNH---YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCKPD------------------- 119
             CK GRV    +   +++     PD + + SLI  +C  D                   
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 120 -AITYNTIIDGLCKQGFV------------------------------------------ 136
             I +N+IID  CK+G V                                          
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFI 419

Query: 137 --------DKAKELFLKMKDKNVKPN------VVTYTSVIRGFCYANDWNEAKRLFIEMM 182
                   DK KE  +     N   N      + TY  ++ G C     ++A R+F  + 
Sbjct: 420 FTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLC 479

Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
              ++    TFN+++D L K G+ DEA  L      +G+ P+ +TY  + +     G + 
Sbjct: 480 LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE 539

Query: 243 HAKELFVSMESMGC 256
              +LF+SME  GC
Sbjct: 540 ELDQLFLSMEDNGC 553



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           K +A T+N +ID L K G  D+AK+LF+      + PN  TY  +           E  +
Sbjct: 484 KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ 543

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF+ M D G   +    N I+ EL + G++  A + L ++ +     +A T +  +D   
Sbjct: 544 LFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID--L 601

Query: 237 LTGRVNHAKELFVS------MESMGC 256
           L+G       +F+       +ES+ C
Sbjct: 602 LSGGKYQEYHIFLPEKYKSFIESLSC 627



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 43/269 (15%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +A+  F+ M+     P  +  +N ++  L     ++    LF  +   G+       + +
Sbjct: 309 DAMLYFEQMIDEGLRPDSIV-YNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSI 367

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI---------------- 121
           I+  CK GRV     +   ++R    PD++T    +   + D                  
Sbjct: 368 IDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTG 427

Query: 122 --------------------------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
                                     TYN I+ GLCK    D A  +F  +   ++K   
Sbjct: 428 DKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEA 487

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
            T+  +I         +EAK LF+     G+ PN  T+ ++ + +   G ++E   L   
Sbjct: 488 RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLS 547

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M  +G   D+   N ++      G +  A
Sbjct: 548 MEDNGCTVDSGMLNFIVRELLQRGEITRA 576


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 21/257 (8%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           C   + L        VSSFNIM+  L  N   D V+S+++ +  +G   D  T+ IL++ 
Sbjct: 44  CFKLWELMGREGSRSVSSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHG 103

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPD 119
           FCK G ++    VL    R     D   ++++I                       CKP+
Sbjct: 104 FCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPN 163

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A  YN +I+GL      + A  +  +M   +  P VVTY+++I G C    + EA  L  
Sbjct: 164 AHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVK 223

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM+D+G+ P+V+T+++++  LC + K+++A  L + +I  G +PD   +N ++ G C  G
Sbjct: 224 EMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVG 283

Query: 240 RVNHAKELFVSMESMGC 256
           ++  A  L+ +M    C
Sbjct: 284 KMQLALSLYFNMNRWDC 300



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           +++ M+  L K    D  +S+   +  +G  P+ + ++ LIN      +      VL  +
Sbjct: 131 AYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREM 190

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
             + F+P VVT+++LI  +CK                    P  ITY+ +I GLC    V
Sbjct: 191 GTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKV 250

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           +KA +L+ ++  K  KP+V  +  +I G C       A  L+  M      PN+VT N +
Sbjct: 251 EKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTL 310

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M+   K+G    A  +   ++++G++PD  +YN  L G C   R++ A
Sbjct: 311 MEGFYKDGDFRNALVIWARIMRNGLQPDIISYNITLKGLCSCNRISGA 358



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D AK ++ ++ +  V P+ V Y +++ GF       +  +L+ E+M +    +V
Sbjct: 1   CEIGDIDGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLW-ELMGREGSRSV 59

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            +FN++M  L  N K+DE  S+ +LM + G   D+ TY  L+ GFC  G +N +  +   
Sbjct: 60  SSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEI 119

Query: 251 MESMG 255
            E  G
Sbjct: 120 AERKG 124



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSL---------IKVC-----------KPDAI 121
           C++G +     V   I+ S  +PD V + ++         IK C                
Sbjct: 1   CEIGDIDGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREGSRSVS 60

Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
           ++N ++ GL     VD+   ++  MK+     + +TY  ++ GFC     N++  +    
Sbjct: 61  SFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIA 120

Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
             +G   +   ++ +++ LCK  K+D+A S+L+ MI+ G +P+A  YN L++G     + 
Sbjct: 121 ERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKF 180

Query: 242 NHAKELFVSM 251
             A  +   M
Sbjct: 181 EDAIRVLREM 190



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           PDA+ YN +++G  +   V + K+ F   ++  +    +V ++  ++RG       +E  
Sbjct: 23  PDAVVYNAMLNGFFR---VRRIKDCFKLWELMGREGSRSVSSFNIMMRGLFDNAKVDEVI 79

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++  M + G   + +T+ +++   CKNG ++++  +L++  + G   DAF Y+ +++G 
Sbjct: 80  SIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGL 139

Query: 236 CLTGRVNHAKELFVSMESMGC 256
           C   +++ A  +   M   GC
Sbjct: 140 CKEAKLDKAVSVLNGMIKSGC 160



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V   NIM+  L         LSL+  +N     P+L TH+ L+  F K G   +  V+
Sbjct: 267 PDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALVI 326

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTII--DGLCKQ 133
             RI+R+   PD++++   +K +C  + I+   +   D +CK+
Sbjct: 327 WARIMRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVCKK 369


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 27/239 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++  L++    D  L L   LNS    PD    + ++  FC+  R      +
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRL---LNSMVCKPDALGFNAVLKGFCRAERWHDASEL 416

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           + ++ R       +TF  LI +                     C PD +TY+++++G  +
Sbjct: 417 IAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSE 476

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG V+ A +LF  M     KP++ +Y +V++G C A  W +A  L  EM+ +   PN VT
Sbjct: 477 QGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVT 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           FN++++ LC+ G +D A  +L+ M  +G  PD FTYN L++GF   GR++ A +L  +M
Sbjct: 534 FNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM 592



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 27/237 (11%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++  ++    ++   D  L L   + S  + PD YT++ ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++R+   P+ VTF + I+                      C PD + Y+T+I+G  +QG
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+A +L   M     KPN V Y + ++G C A  W +   L  EM+ +G  PN  TF+
Sbjct: 275 HVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFS 331

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +++  LC+N  +D A  +L+ M ++G  PD   YN +++     GRV+ A  L  SM
Sbjct: 332 MLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM 388



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 20/219 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +F   +    +N   D  + L  ++   G  PD+  +S LIN F + G V     
Sbjct: 222 PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALD 281

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +L                 CKP+ + YN  + GLC     +   EL  +M  K   
Sbjct: 282 LLNTML-----------------CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCS 324

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN  T++ +I   C  N  + A  +  +M   G +P+ V +N+I++ L + G++D+A  L
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L+ M+    +PDA  +N +L GFC   R + A EL   M
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM 420



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F++++  L +N   D+ + + +++   G  PD   ++I+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCK 132
           L  ++     PD + F +++K  C+ +                     +T+N +ID LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 441

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+ A ++F +M      P++VTY+S++ GF        A +LF  M     +P++ +
Sbjct: 442 NGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFS 498

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  + ++A  L+  M+     P+  T+N L++  C  G V+ A E+   M 
Sbjct: 499 YNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMP 558

Query: 253 SMG 255
           + G
Sbjct: 559 NYG 561



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 18/179 (10%)

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           +H+ L+  +C+ GR++    VLG   R+    +VVT+T+LI              DG C+
Sbjct: 126 SHNTLVAGYCRDGRLADAERVLG-AARATGAANVVTYTALI--------------DGYCR 170

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G +D A  L   M    V P+  TY +V++G C A  W EA+ L  EM+     PN VT
Sbjct: 171 SGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVT 227

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           F   +   C+NG +D A  LLD M ++G  PD   Y+TL++GF   G V+ A +L  +M
Sbjct: 228 FATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM 286



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R  P  P + S+N +L  L +   ++    L   +      P+  T +ILIN  C+ G
Sbjct: 486 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 545

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     VL ++     TPD+               TYN +I+G  +QG +D A +L   
Sbjct: 546 LVDRAIEVLEQMPNYGSTPDI--------------FTYNALINGFSEQGRLDDALKLLST 591

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           M   + KP+ ++Y S ++G C A  W +A+ L  EM+     PN VTF
Sbjct: 592 M---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+ N +I  LC    +  A E  L         + V++ +++ G+C      +A+R+   
Sbjct: 91  ISCNILIKKLCATRRLADA-ERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGA 149

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
               G   NVVT+  ++D  C++G++D+A   L L+    V PD +TYNT+L G C+  +
Sbjct: 150 ARATGAA-NVVTYTALIDGYCRSGRLDDA---LRLIASMPVAPDTYTYNTVLKGLCIAKK 205


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 21/222 (9%)

Query: 55  VLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI- 113
            +++F  + +    PD + ++ +++  C+ GR     V+L   + + F P++V + +LI 
Sbjct: 161 AMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 114 ------------KV--------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
                       KV        C P+  TY  +I GLCK G V++A  LF +M +  ++P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
           NVVTYT++I+G C       A RL   M   G+ PN  TF+V++D LCK  K++EA   L
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFL 340

Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             +++ GV+ +   Y +L+DG C TG+++ A EL   M S G
Sbjct: 341 GSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
             A+ +F  M+     P  V ++  ++       H      L   + + GL P+ +T S+
Sbjct: 264 ERAMVLFSRMVEAGLEPN-VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
           LI+  CK  +V    + LG +++     + V +TSLI  +CK                  
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             PDA +Y+++IDGLC+Q  + +A  +   M +K ++ + VTYT +I            K
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPK 442

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           ++F +M+  G+ P++VT+ V +   C+ G+M++A S++  M+  GV P+  TYNTL+ G+
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G V+ A   F  M   G
Sbjct: 503 ANLGLVSQAFSTFEVMVGKG 522



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  +N ++         +  L +F+ ++     P++ T++ LI+  CK G+V    V+
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
             R++ +   P+VVT+T+LI+                                    +CK
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 118 PDAI--------------------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
            + +                     Y ++IDGLCK G +D A EL  KM  +   P+  +
Sbjct: 330 REKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
           Y+S+I G C     ++A  +  +MM++G+Q + VT+ +I+DEL +    +    + D MI
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G+ PD  TY   +  +C  GR+  A+ + V M   G
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRG 487



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 25/243 (10%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           PP+   N +L  LA+++ +  + SL  R+ +     +L T++ LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPAR----NLRTYTTLINAYCLAGDIPAAKQH 94

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L  +L +   PD   +TS +                     + C   A TY  ++ GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V +A  +F+ M+  +  P+   Y +++ G C A    EA+ L  E M  G +PN+V 
Sbjct: 155 AGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++D  C  G+M+ A  + + M  +   P+  TY  L+ G C +G+V  A  LF  M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 253 SMG 255
             G
Sbjct: 275 EAG 277



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 33/248 (13%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++  L K    D    L +++ S G  PD +++S LI+  C+  ++S   ++L  ++
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 99  RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
                   VT+T +I                         PD +TY   +   C++G ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
            A+ + ++M D+ V PN+VTY ++IRG+      ++A   F  M+ +G +PN  ++ V++
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534

Query: 198 D------------ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
                        ++ K   M +   LL+ + +  +   A  Y+  +   C   R+  AK
Sbjct: 535 RLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAK 594

Query: 246 ELFVSMES 253
             F+ M++
Sbjct: 595 HFFMGMQN 602



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           IFD M+    +P  V+ + + +    +    +   S+  ++   G+FP+L T++ LI  +
Sbjct: 444 IFDKMIATGINPDIVT-YTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
             +G VS  F     ++   + P+  ++T L+++    + + N++   + K   +   + 
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSV--DIWKIADMKDLQV 560

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           L   + ++ +      Y+  IR  C  +   EAK  F+ M +  + P+   +  I+D
Sbjct: 561 LLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
            E   IF+ M  +  +P   + +N +   + + K+    L L + + + G  P +   + 
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFT-YNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTE 550

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           ++   C  GRV+     L  +L+  F PD+VT              Y+  ++G+C  G V
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVT--------------YSAAMNGMCNTGEV 596

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           D A  LF  +  K   P+VV +  +I GF  ++  +EA+++  EM+++G+ P+VVT+N++
Sbjct: 597 DDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLM 656

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D  CK G++++A S LD M+    +P   TY +L+DGFC  GR + A +L+  M   GC
Sbjct: 657 IDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGC 716



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 15/210 (7%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA+   D ML++    P + +++  +  +      D  L LF+ ++     PD+  H+IL
Sbjct: 563 EAVQFLDGMLQIG-FLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNIL 621

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
           IN F K  ++     ++  +L     P VVT+  +I VC              CK G ++
Sbjct: 622 INGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVC--------------CKTGRIE 667

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
           KA     KM  +  +P V+TYTS+I GFC A   +EA +L+ EM ++G  PN + +   +
Sbjct: 668 KAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFI 727

Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + L K G+++ A +  + M+  G   D F+
Sbjct: 728 NGLRKCGRIETALTYFEEMVTKGFELDTFS 757



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%)

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           CK   + +N +I  LC    +++   +F +MKD  + P+  TY S+  G C       A 
Sbjct: 471 CKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAAL 530

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            L  EM   G  P +     ++ +LC +G++ EA   LD M+Q G  PD  TY+  ++G 
Sbjct: 531 DLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGM 590

Query: 236 CLTGRVNHAKELF 248
           C TG V+ A  LF
Sbjct: 591 CNTGEVDDALHLF 603



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 29/262 (11%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST--GLFPDLYT 73
           P+ A+  FD         P   ++N +L  LAK    D   +  + + +       D YT
Sbjct: 154 PDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKYT 213

Query: 74  HSILINCFCKMGR------VSHGFVVLGRILRSCFTPDVVTFTSLIKV------------ 115
            + L+ C+C  GR      V      LG +     T  +V F+   KV            
Sbjct: 214 LTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGSMEA 273

Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
              +    T + ++ G  KQG VDKA ++F KM       ++  Y+ +I G C   D   
Sbjct: 274 LGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIAR 333

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH----GVRPDAFTYN 229
           A +LF EM   GV P+V     +++  C+ G        ++   ++     V P    YN
Sbjct: 334 AVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVP---LYN 390

Query: 230 TLLDGFCLTGRVNHAKELFVSM 251
            +L+     G V  A +L  SM
Sbjct: 391 VVLEELVHCGEVEAAYQLLRSM 412



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 32/239 (13%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           ++ +++++  L + K     + LFK + S+G+ PD+     +I  FC+ G     F V+G
Sbjct: 315 LAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREG----DFAVIG 370

Query: 96  RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMK-------- 147
             +      + +   S++ +       YN +++ L   G V+ A +L   M         
Sbjct: 371 PFINE--NAEYLKSGSVVPL-------YNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNN 421

Query: 148 -----------DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
                       ++ KPN  ++  V+ G C     + A  L  +M+  G +  ++ FN +
Sbjct: 422 DVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDL 481

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           + ELC   +++E   + + M   G+ P  FTYN+L  G C       A +L   M++ G
Sbjct: 482 IHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNG 540



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 16/220 (7%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +   +L CL      DT +  F    ++ G  P+ YT++ L++   K GR       L  
Sbjct: 140 ALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLRE 199

Query: 97  ILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNV 155
           ++  C    V            D  T  +++   C  G  D A ++F +M +   V  +V
Sbjct: 200 MVARCGDGSV------------DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHV 247

Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
           +T  +++  F      + A  L   M   G++ +  T +V++    K G++D+A  +   
Sbjct: 248 LT--TLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAK 305

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           M+ +G   D   Y+ L++G C    +  A +LF  M+S G
Sbjct: 306 MVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSG 345


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 23/261 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P +AL   + M+      P  ++FN +L  L K+  ++    +F       +  D+Y+  
Sbjct: 98  PEQALFYXNQMIG-RGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGN-VKLDVYSFG 155

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC------------------- 116
           I+I   C++G +  GF VLG++     +P+VV +T+LI  C                   
Sbjct: 156 IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGEL 215

Query: 117 --KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
               +  TY  +I+G  K G      EL+ KMK   + PNV TY S+I   C     N A
Sbjct: 216 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNA 275

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
             LF EM ++GV  NVVT+N ++  LC+  ++ EA  L+  M + G+ P+  +YNTL+DG
Sbjct: 276 FELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDG 335

Query: 235 FCLTGRVNHAKELFVSMESMG 255
           +C  G ++ A  LF  M+S G
Sbjct: 336 YCSIGNLDKASSLFNQMKSSG 356



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 15/234 (6%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           +   M  M  SP  V    ++ GC  KN   +    LF ++    +  + YT+++LIN F
Sbjct: 173 VLGQMEEMGLSPNVVVYTTLIDGC-CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
            KMG    G  +  ++  +   P+V T+ S+I  C              C  G ++ A E
Sbjct: 232 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRC--------------CNDGKLNNAFE 277

Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
           LF +M+++ V  NVVTY ++I G C      EA+RL   M   G+ PN++++N ++D  C
Sbjct: 278 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYC 337

Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             G +D+ASSL + M   G  P   TYN L+ GF          ++   ME+ G
Sbjct: 338 SIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 21/220 (9%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK- 114
           + L++++  TG+ P++YT++ +I   C  G++++ F +   +       +VVT+ +LI  
Sbjct: 241 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGG 300

Query: 115 -------------VCK-------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
                        +C+       P+ I+YNT+IDG C  G +DKA  LF +MK     P+
Sbjct: 301 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 360

Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
           + TY  +I GF  A +      +  EM  +G+ P+ VT+ ++MD L ++  +++A  +  
Sbjct: 361 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 420

Query: 215 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
            M + G+  D + Y  L+ G C+ G +  A +LF S++ M
Sbjct: 421 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 460



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 15/215 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++A  +F+ M +     P ++++NI++   ++ K+   V  + + + + GL P   T++I
Sbjct: 343 DKASSLFNQM-KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 401

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           L++   +   +   F +   + ++    D+                Y  +I GLC  G +
Sbjct: 402 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYI--------------YGVLIHGLCVVGDM 447

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
            +A +LF  + + ++KPN V Y ++I G+C       A RL  EM + G+ PNV ++N  
Sbjct: 448 KEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNST 507

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
           +  LCK+ K  EA  LL  MI+ G++P    +N +
Sbjct: 508 IXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 22/260 (8%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           N A  +FD M R       V ++N ++G L + +       L  R+   GL P+L +++ 
Sbjct: 273 NNAFELFDEM-RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
           LI+ +C +G +     +  ++  S  +P + T+  LI                     + 
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
             P  +TY  ++D L +   ++KA +++  M+   +  ++  Y  +I G C   D  EA 
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
           +LF  + +  ++PN V +N ++   CK G    A  LL  M ++G+ P+  +YN+ +   
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXIL 511

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C   +   A+ L   M  +G
Sbjct: 512 CKDEKWTEAEVLLKDMIELG 531


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 22/246 (8%)

Query: 32  SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           S P V ++N+++  L K+K  +  L+LF+     G+  D++T+S L++ F K GR +   
Sbjct: 297 SVPDVFTYNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 92  VVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGL 130
            V   + ++   PD V +  LI                     K   PD  TYN +ID L
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 415

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
              G  +KA   F  MK +   P+VVTY +++ G       +EA  LF EM      P++
Sbjct: 416 SSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDL 475

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            TF  ++D L K G+M++A      +++ G  P+++ YN L+ GFC +G+V+   ELF  
Sbjct: 476 TTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQD 535

Query: 251 MESMGC 256
           M    C
Sbjct: 536 MIECSC 541



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           +AL +F Y ++     P    +N+++ CL K    D  L L + +N  G+ PD  T++I+
Sbjct: 353 KALEVF-YNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIV 411

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------VC 116
           I+     GR    +   G + R   +PDVVT+ +L+                       C
Sbjct: 412 IDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC 471

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            PD  T+ T+ID L K G ++ A E   ++      PN   Y ++I GFC +   ++   
Sbjct: 472 MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYE 531

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           LF +M++    P+ +T+ +++    + G    A  LL  M++ G  P   TYN L+    
Sbjct: 532 LFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLS 591

Query: 237 LTGRVNHAKELFVSMESMG 255
           + G+V  A  LF  M + G
Sbjct: 592 MAGQVEDAYTLFKEMIAKG 610



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 14/206 (6%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           M++     P V ++N +L  L K +  D    LF  + +    PDL T   LI+   K G
Sbjct: 430 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAG 489

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
           R+        R+++    P+              +  YN +I G C+ G VDK  ELF  
Sbjct: 490 RMEDALEQSARLVKMGHAPN--------------SYIYNALISGFCRSGQVDKGYELFQD 535

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M + +  P+ +TYT ++ GF      + A  L  EM+ +G  P + T+NV++  L   G+
Sbjct: 536 MIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQ 595

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTL 231
           +++A +L   MI  G  PD  TY+ L
Sbjct: 596 VEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 22/251 (8%)

Query: 6   SGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST 65
           +G+GD        AL +F  + +     P   SF+ ++  L K       L++F+ +   
Sbjct: 138 AGDGD-------RALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGA 190

Query: 66  GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNT 125
           GL  D+   + LI+C C++G +     +L  +                  C  DA TY  
Sbjct: 191 GLKADVNVCNTLIHCTCRLGMLRQARRLLHHM--------------TAHACARDAFTYGI 236

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +++  C+ G + +        +      + V Y  +I+GF       EA +LF   M + 
Sbjct: 237 LVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKE 296

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
             P+V T+N+++  LCK+ +++EA +L     Q GV  D FTY+ L+D F   GR   A 
Sbjct: 297 SVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 246 ELFVSMESMGC 256
           E+F +M+  GC
Sbjct: 356 EVFYNMQKAGC 366



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
           PD    +  ++  C++ RV     +   +  +C              C PD + YNT+I 
Sbjct: 87  PDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC-------------DCAPDVVAYNTLIA 133

Query: 129 GLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
           G CK G  D+A ++F ++K + + KPN V++ +++   C  +   +A  +F EM+  G++
Sbjct: 134 GYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLK 193

Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
            +V   N ++   C+ G + +A  LL  M  H    DAFTY  L++  C  G+++     
Sbjct: 194 ADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASF 253

Query: 248 FVSMESMGC 256
                  GC
Sbjct: 254 MELARHDGC 262



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHS 75
           + A+ + D M R +   P   +F   +  L + +  +  ++LF  +  T    PD+  ++
Sbjct: 70  DAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYN 129

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            LI  +CK G       +  R+ +                CKP+A++++T++  LCK   
Sbjct: 130 TLIAGYCKAGDGDRALDMFRRLKQE-------------GSCKPNAVSFDTLVIFLCKMSR 176

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
              A  +F +M    +K +V    ++I   C      +A+RL   M       +  T+ +
Sbjct: 177 ATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGI 236

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           +++  C+ G+M E +S ++L    G    A  YN ++ GF   GR+  A +LF S
Sbjct: 237 LVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFES 291



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 16/240 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHS 75
            +A+ +FD M       P V ++N ++    K    D  L +F+RL   G   P+  +  
Sbjct: 106 EQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFD 165

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L+   CKM R +    V   +L +    DV        VC       NT+I   C+ G 
Sbjct: 166 TLVIFLCKMSRATDALAVFQEMLGAGLKADV-------NVC-------NTLIHCTCRLGM 211

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           + +A+ L   M       +  TY  ++   C A   +E           G   + V +N 
Sbjct: 212 LRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNF 271

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           I+    + G++ EA+ L +  +     PD FTYN LL   C + ++  A  LF   E  G
Sbjct: 272 IIQGFIRCGRLAEATQLFESTMTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQGG 330



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/86 (20%), Positives = 41/86 (47%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++ I++   ++  H    + L + +   G  P L T+++LI      G+V   + +
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPD 119
              ++   F PD+ T+++L  +  P+
Sbjct: 603 FKEMIAKGFNPDMQTYSALPNLSTPN 628


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 20/243 (8%)

Query: 17  NEALCIFDYMLRMHPSPP----PVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
           ++A+C    +L   P PP     V ++  +L  L++   Y+  L LF  L   G+ P L 
Sbjct: 154 HDAVCA---LLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLV 210

Query: 73  THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK 132
           T++++++ + +MGR     V L   +R+                +PD  T +T+I   C+
Sbjct: 211 TYNVVLDVYGRMGRSWPRIVALLDEMRAAGV-------------EPDGFTASTVIAACCR 257

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G VD+A   F  +K +   P VVTY ++++ F  A ++ EA R+  EM   G QP+ VT
Sbjct: 258 DGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVT 317

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N +     + G  +EA+  LD M   G+ P+AFTYNT++  +   G+V+ A  LF  M+
Sbjct: 318 YNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMK 377

Query: 253 SMG 255
             G
Sbjct: 378 KTG 380



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 122/245 (49%), Gaps = 23/245 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P ++++N +L  L++   + T  S+  ++ + G  P+  ++S+L+ C+ K G V+    +
Sbjct: 488 PCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAI 547

Query: 94  LGRILRS-CFTPDVVTFTSLIKV---CK------------------PDAITYNTIIDGLC 131
              +  S    P  V   +L+     C+                  PD + +N+++    
Sbjct: 548 ENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYA 607

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNV 190
           K G   KA E+F  +K   + P+++TY S++  +   ++  EA+++  ++   Q ++P+V
Sbjct: 608 KNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDV 667

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V++N +++  CK G + EA  +L  M+  G+ P A TY+TL+ G+      + A+E+   
Sbjct: 668 VSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGY 727

Query: 251 MESMG 255
           M   G
Sbjct: 728 MVQHG 732



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 22/251 (8%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           LR     P + ++N++L    +  + +  +++L   + + G+ PD +T S +I   C+ G
Sbjct: 200 LRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDG 259

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
            V         +      P VVT+ +L++V                     C+PDA+TYN
Sbjct: 260 LVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYN 319

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +     + GF ++A      M  K + PN  TY +V+  +      +EA  LF +M   
Sbjct: 320 ELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKT 379

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  PNV T+N+++  L K  +      +L  M + G  P+  T+NT+L      G  ++ 
Sbjct: 380 GFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYV 439

Query: 245 KELFVSMESMG 255
             +   M S G
Sbjct: 440 TRVLEGMRSCG 450



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 22/257 (8%)

Query: 20  LCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
           + + D M      P   ++  ++  C  ++   D  ++ F+ L + G  P + T++ L+ 
Sbjct: 230 VALLDEMRAAGVEPDGFTASTVIAAC-CRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQ 288

Query: 80  CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKP 118
            F K G  +    VLG + ++   PD VT+  L                      K   P
Sbjct: 289 VFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLP 348

Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
           +A TYNT++      G VD+A  LF +MK     PNV TY  V+      + +     + 
Sbjct: 349 NAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEML 408

Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
            EM   G  PN VT+N ++    K G  D  + +L+ M   GV     TYNTL+  +   
Sbjct: 409 GEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRC 468

Query: 239 GRVNHAKELFVSMESMG 255
           G   +A +++  M S G
Sbjct: 469 GSRTNAFKMYNEMTSAG 485



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 104/229 (45%), Gaps = 21/229 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N + G  A+   ++        + S GL P+ +T++ ++  +  +G+V     +
Sbjct: 313 PDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALAL 372

Query: 94  LGRILRSCFTPDVVT-------------FTSLIKV--------CKPDAITYNTIIDGLCK 132
             ++ ++ F P+V T             FT ++++        C P+ +T+NT++    K
Sbjct: 373 FDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGK 432

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G  D    +   M+   V+ +  TY ++I  +        A +++ EM   G  P + T
Sbjct: 433 RGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITT 492

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
           +N +++ L + G    A S++  M   G +P+  +Y+ LL  +   G V
Sbjct: 493 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNV 541



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 22/172 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P +  FN ML   AKN  Y     +F  +  +GL PDL T++ L++ + K         +
Sbjct: 594 PDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKI 653

Query: 94  LGRILRS-CFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           L ++  S    PDVV++ ++I   CK                    P A+TY+T++ G  
Sbjct: 654 LNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYS 713

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMD 183
                 +A+E+   M    +KP  +TY  V+  +C A  + EA+    E+ +
Sbjct: 714 SLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSE 765


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 21/257 (8%)

Query: 21  CIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
           CI  + L        V SFNIM+  L  N   D  +S+++ +  +G   D  T+ IL++ 
Sbjct: 44  CIELWELMGREDSQNVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDG 103

Query: 81  FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PD 119
           FCK G ++    VLG         D   ++++I  +CK                    P+
Sbjct: 104 FCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPN 163

Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
           A  YNT+I+G       D A  +F +M   N  P VVTY ++I G C    + EA  L  
Sbjct: 164 AHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVK 223

Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
           EM+++G +P V+T++++M  LC+  K++ A  L + +I +G++PD    N L+ G C  G
Sbjct: 224 EMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVG 283

Query: 240 RVNHAKELFVSMESMGC 256
           +   A  L+  M    C
Sbjct: 284 KTQLALMLYFDMNRWNC 300



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 15/228 (6%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +EA+ + + M++ +   P    +N ++        +D  + +F+ + ST   P + T++ 
Sbjct: 146 DEAVSVLNGMIK-NGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
           LIN  CK  R +  + ++  +L               K  KP  ITY+ ++ GLC+   V
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLE--------------KGWKPCVITYSLLMKGLCQGHKV 250

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
           + A +L+ ++    +KP+V     +I G C       A  L+ +M      PN+VT N +
Sbjct: 251 EMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTL 310

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           M+   K+G +  A  +   ++++G++PD  +YN  L G C   R++ A
Sbjct: 311 MEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFA 358



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 55/258 (21%)

Query: 53  DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS---HGFVVLGR------------- 96
           D    ++K +  + + PD   ++ ++N F + GR+      + ++GR             
Sbjct: 7   DGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREDSQNVVSFNIMM 66

Query: 97  ------------------ILRSCFTPDVVTFTSLIK-VCKP------------------- 118
                             + +S F  D  T+  L+   CK                    
Sbjct: 67  RGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGGV 126

Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            DA  Y+ +I+GLCK+  +D+A  +   M      PN   Y ++I GF   + +++A R+
Sbjct: 127 LDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRV 186

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
           F EM      P VVT+N +++ LCK  +  EA  L+  M++ G +P   TY+ L+ G C 
Sbjct: 187 FREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQ 246

Query: 238 TGRVNHAKELFVSMESMG 255
             +V  A +L+  + S G
Sbjct: 247 GHKVEMALQLWNQVISNG 264



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           C+ G +D A+ ++ +M +  V P+ V Y +++ GF  A    +   L+ E+M +    NV
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELW-ELMGREDSQNV 59

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
           V+FN++M  L  NG +D+A S+ +LM Q G   D+ TY  L+DGFC  G +N +  +   
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGI 119

Query: 251 MESMG 255
            E  G
Sbjct: 120 AEEKG 124


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 13/230 (5%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           LR    P  V ++  ++  L++N+ +   L  F+++   G  P L T++++I+ + K GR
Sbjct: 108 LREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
                + L   +++             +  +PD  TYNT I         ++A ELF +M
Sbjct: 168 SWENILELFEEMKA-------------QGIQPDEYTYNTAITACASGSLCEEATELFTQM 214

Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
           K  N  P+ VTY +++  +  A  +NEA  +  EM   G  PN+VT+N ++    + G  
Sbjct: 215 KSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLC 274

Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + A+ + D M+  G+ PD FTY +LL  +   G+V  A E++  M +  C
Sbjct: 275 NAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNC 324



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 23/260 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAK-NKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           EAL  F+ M    P P  V+ +N+++    K  + ++ +L LF+ + + G+ PD YT++ 
Sbjct: 135 EALGFFEQMKEAGPQPSLVT-YNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNT 193

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
            I              +  ++  S  TPD VT+ +L+ V                     
Sbjct: 194 AITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAG 253

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C P+ +TYN ++    + G  + A E+   M  K ++P+V TYTS++  +  A    +A 
Sbjct: 254 CLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAM 313

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            ++ +M      PN  TFN ++    KN    E   + + M   GV PD  T+N+LL  F
Sbjct: 314 EIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAF 373

Query: 236 CLTGRVNHAKELFVSMESMG 255
              G  +   ++F  M+  G
Sbjct: 374 GKNGMYSEVLKVFRGMKKAG 393



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 22/249 (8%)

Query: 18  EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
           EA  +F  M   + +P  V+ +N +L    K   Y+   ++ K + S G  P++ T++ L
Sbjct: 206 EATELFTQMKSSNCTPDRVT-YNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNEL 264

Query: 78  INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
           ++ F + G  +    +   ++     PDV T+TSL+                       C
Sbjct: 265 LSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNC 324

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
            P++ T+N +I    K     +   +F  M+   V+P++VT+ S++  F     ++E  +
Sbjct: 325 TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLK 384

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F  M   G +P+  TFN++++   + G  D+A S+ D M+Q G  PD  T+NTLL    
Sbjct: 385 VFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALA 444

Query: 237 LTGRVNHAK 245
             GR  HA+
Sbjct: 445 REGRWEHAE 453



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 34/245 (13%)

Query: 44  GCLAKNKHYDTVLSLFKRLN-------------STGLFPDLYTHSILINCFCKMGRVSHG 90
           GCL     Y+ +LS F R               S G+ PD++T++ L++ + + G+V   
Sbjct: 253 GCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQA 312

Query: 91  FVVLGRILRSCFTPDVVTFTSLI-------------------KVC--KPDAITYNTIIDG 129
             +  ++  S  TP+  TF +LI                   + C  +PD +T+N+++  
Sbjct: 313 MEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGA 372

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
             K G   +  ++F  MK    +P+  T+  +I  +      ++A  ++  M+  G  P+
Sbjct: 373 FGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPD 432

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
           + TFN ++  L + G+ + A  +LD + +   +P+   Y ++L  +   G +   KE+  
Sbjct: 433 LATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVD 492

Query: 250 SMESM 254
           ++ ++
Sbjct: 493 TLHTI 497



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 125/264 (47%), Gaps = 24/264 (9%)

Query: 15  TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
           + ++AL I+D ML+   +P  +++FN +L  LA+   ++    +   LN +   P+   +
Sbjct: 413 SSDQALSIYDGMLQAGCTPD-LATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAY 471

Query: 75  SILINCFCKMGRVS---------HG-FVVLGRILRSCFTPDVVTFTSLIKVCK------- 117
           + +++ +   G +          H  +V   +IL   F   V +  SL+   +       
Sbjct: 472 ASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVL-VYSKCSLVDEAEDAFLAMR 530

Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
                 D  T+N +I    K+G +DKA + F  ++   ++P+VVTY  ++  +     + 
Sbjct: 531 HHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYR 590

Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
           + +    E M  G  P++V++N ++    K+G++  A+ +   M+ +G++PD+FTYNT +
Sbjct: 591 KCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFV 650

Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
             +   G    A  +   M   GC
Sbjct: 651 GCYVNGGMFPEALSVVKHMHKTGC 674



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 57/295 (19%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           +E + IF+ M +     P + ++N +LG   KN  Y  VL +F+ +   G  PD  T +I
Sbjct: 345 SEMMVIFEDM-QACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNI 403

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC-------------------- 116
           LI  + + G       +   +L++  TPD+ TF +L+                       
Sbjct: 404 LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSS 463

Query: 117 -KPDAITYNTIIDGLCKQG-----------------------------------FVDKAK 140
            KP+ I Y +++      G                                    VD+A+
Sbjct: 464 YKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAE 523

Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
           + FL M+      +  T+ ++I  +      ++A   F  +   G++P+VVT+N +M   
Sbjct: 524 DAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMY 583

Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            + G   +  + L   +  G  PD  +YNT++  +   G+++ A  +F  M S G
Sbjct: 584 GREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNG 638



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R H      S+FN M+    K    D     F  L STGL PD+ T++ L+  + + G 
Sbjct: 529 MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGM 588

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
               +      LR C                PD ++YNT+I    K G +  A  +F +M
Sbjct: 589 ----YRKCEATLRECMAAGQT----------PDLVSYNTVIFSYSKHGQLSSATRIFHEM 634

Query: 147 KDKNVKPNVVTYTSVIRGFCYAND--WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
               ++P+  TY + +   CY N   + EA  +   M   G +P+ VT+  ++D  CK G
Sbjct: 635 VSNGIQPDSFTYNTFVG--CYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIG 692

Query: 205 KMDEASSLLDLM 216
           K +E   +L  +
Sbjct: 693 KFEEVERILKFI 704



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           +PD +T   ++  L ++  +     LF  ++++    +V  YTS+I        + EA  
Sbjct: 79  RPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALG 138

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            F +M + G QP++VT+NVI+D   K G+  +    L + M   G++PD +TYNT +   
Sbjct: 139 FFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITA- 197

Query: 236 CLTGRV-NHAKELFVSMESMGC 256
           C +G +   A ELF  M+S  C
Sbjct: 198 CASGSLCEEATELFTQMKSSNC 219



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 23/148 (15%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           +LR     P V ++N ++G   +   Y    +  +   + G  PDL +++ +I  + K G
Sbjct: 563 LLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHG 622

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYN 124
           ++S    +   ++ +   PD  T+ + +                       CKPD +TY 
Sbjct: 623 QLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYR 682

Query: 125 TIIDGLCKQGFVDKAKEL--FLKMKDKN 150
           T++D  CK G  ++ + +  F+K  D N
Sbjct: 683 TLVDAYCKIGKFEEVERILKFIKSSDPN 710


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 19  ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
           A  +FD + +    P  V SFN ++    K    D    L   +  +G+ PD+YT+S+LI
Sbjct: 155 AQSVFDAITKWSLRPS-VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLI 213

Query: 79  NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
           N  CK  ++     +   +L     P+ VTFT              T+IDG CK G VD 
Sbjct: 214 NGLCKESKMDDANXLFDEMLDKGLVPNGVTFT--------------TLIDGHCKNGRVDL 259

Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
           A E++ +M  +++ P+++TY ++I G C   D  +A+ L  EM+ +G+ P+ +T+  ++D
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLID 319

Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
             CK G ++ A      MI+  +R D   Y  L+ G C  GR   A+++   M ++G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + + H    P  +   +L  L K K++  V   ++     G    LY  +IL++ F K G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSL---------------------IKVCKPDAITYN 124
            +     V   I +    P VV+F +L                     +   +PD  TY+
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  +D A  LF +M DK + PN VT+T++I G C     + A  ++ +M+ Q
Sbjct: 211 VLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
            + P+++T+N ++  LCK G + +A  L+D MI  G+ PD  TY TL+DG C  G +  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETA 330

Query: 245 KE 246
            E
Sbjct: 331 FE 332



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 21/215 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++++++  L K    D    LF  +   GL P+  T + LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 94  LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
             ++L    +PD++T+ +LI  +CK                    PD ITY T+IDG CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCK 323

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G ++ A E   +M  +N++ + V YT++I G C      +A+++  EM++ G++P + T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGT 383

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           + +I++E CK G +   S LL  M + G  P   T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 130/263 (49%), Gaps = 23/263 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P  AL +  +++  +     V ++  ++  L K+   D   +L +++   G  P++ T++
Sbjct: 26  PRHALELL-HVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYT 84

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
            LI+  CK  R       + R+LRS   PD+VT+ SLI  +C                  
Sbjct: 85  ALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIE 144

Query: 118 ----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
               PD +TYNT I GLCK G +DK  E+  +M    + P+VVT+ S+I G C AN  ++
Sbjct: 145 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDD 204

Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
           A ++F  M+++G  P+ +T+++++D L +  ++D    +L+ M++ G    + TY  L+ 
Sbjct: 205 AFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIH 264

Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
                G +  A   +      GC
Sbjct: 265 ALIRAGDIESASWAYEQAMEAGC 287



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 15/187 (8%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDG 129
           D   ++ LI   CK  +  H   +L  +  + +   VVT+T              T+IDG
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYT--------------TLIDG 54

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           LCK G +D A+ L  KM D    PNVVTYT++I G C A   ++A +    M+  G +P+
Sbjct: 55  LCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114

Query: 190 VVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           +VT+N ++  LC   +MD+A  +L +LMI+ G  PD  TYNT + G C  G+++   E+ 
Sbjct: 115 LVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEML 174

Query: 249 VSMESMG 255
             M+  G
Sbjct: 175 EEMDRGG 181



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P++A+     MLR    P  V+  +++ G    N+  D  L L + +  +G  PD+ T++
Sbjct: 96  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYN 155

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------K 114
             I+  CK G++  G  +L  + R   +PDVVTF S+I                     +
Sbjct: 156 TFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLER 215

Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
            C PD++TY+ ++D L +   +D  +E+   M          TY  +I     A D   A
Sbjct: 216 GCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESA 275

Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
              + + M+ G    V T N  +  LC++GK   A ++L  MI+ G  P+  +YN ++DG
Sbjct: 276 SWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDG 335

Query: 235 FCLTGRVNHAKELFVSMESMGC 256
            C +G V+ A +L   M   GC
Sbjct: 336 LCKSGNVDDAWKLSRKMLDSGC 357



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 15/219 (6%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +N ++  L K +     L L   + + G    + T++ LI+  CK G +     +L ++ 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA 72

Query: 99  RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
            +   P+VVT+T+L              IDGLCK      A +   +M     +P++VTY
Sbjct: 73  DAGCAPNVVTYTAL--------------IDGLCKARRPHDAIQTVKRMLRSGCEPDLVTY 118

Query: 159 TSVIRGFCYANDWNEAKRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
            S+I G C AN  ++A  +  E+M + G  P+VVT+N  +  LCK GK+D+   +L+ M 
Sbjct: 119 NSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD 178

Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           + G+ PD  T+ +++ G C   R++ A ++F  M   GC
Sbjct: 179 RGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC 217



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 17  NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
           ++ L + + M R   SP  V+  +I+ G L K    D    +FK +   G  PD  T+SI
Sbjct: 168 DKGLEMLEEMDRGGISPDVVTFCSIISG-LCKANRIDDAFQVFKGMLERGCVPDSLTYSI 226

Query: 77  LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--------------------- 115
           +++   +  R+     VL  +++S       T+  LI                       
Sbjct: 227 MLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAG 286

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
           C  +  T+N  I  LC+ G    AK + L M +    PN+++Y  VI G C + + ++A 
Sbjct: 287 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAW 346

Query: 176 RLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV-RPDAFTYNTLLD 233
           +L  +M+D G  +P+V+ FN ++   CK G++ +A  LL  M    +  PD  TYNT++D
Sbjct: 347 KLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMID 406

Query: 234 GFCLTGRVNHAKELFVSMESMG 255
           G    G +  AK L   M+++G
Sbjct: 407 GQSKFGSLKQAKLLLEEMQAVG 428



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%)

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           M  ++ + +   Y ++I G C A     A  L   M   G   +VVT+  ++D LCK+G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
           +D A +LL  M   G  P+  TY  L+DG C   R + A +    M   GC
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGC 111


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R H    P  +   +L    K K++ +V   +K +   G    LY  +IL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
            +     V   I +    P VV+F +L+                        +PD  TY+
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYS 210

Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
            +I+GLCK+  ++ A ELF +M    + PN VT+T++I G C     + A   + EM+ Q
Sbjct: 211 VLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQ 270

Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
           G  P+++T+N ++  LCK G + +A  L+D M   G++PD  TY TL+DG C  G +  A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V SFN ++    +    D    L   ++ +G+ PD+YT+S+LIN  CK  +++    +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANEL 228

Query: 94  LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
              ++ +   P+ VTFT+LI   CK                    PD ITYNT+I GLCK
Sbjct: 229 FDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCK 288

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G + +A++L  +M  K +KP+ +TYT++I G C   D   A +    M+ + ++ + V 
Sbjct: 289 EGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVA 348

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +  ++  LC+ G+   A  +L  M+  G++PD  TY  +++ FC  G V    +L   M+
Sbjct: 349 YTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQ 408

Query: 253 SMG 255
             G
Sbjct: 409 RDG 411



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           P  +  FNI++    K        S+F  +   GL P + + + L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           +   +  S   PDV T++ LI  +CK                    P+ +T+ T+IDG C
Sbjct: 193 LKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHC 252

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K G +D A E + +M  +   P+++TY ++I G C   D  +A+ L  EM  +G++P+ +
Sbjct: 253 KTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G ++ A      MI+  +R D   Y  L+ G C  G+   A+++   M
Sbjct: 313 TYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREM 372

Query: 252 ESMG 255
            S+G
Sbjct: 373 LSVG 376



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 23/218 (10%)

Query: 29  MHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           MH S   P V ++++++  L K    +    LF  +   GL P+  T + LI+  CK G 
Sbjct: 197 MHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
           +         +LR  F+PD++T+ +LI                     K  KPD ITY T
Sbjct: 257 IDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +IDG CK+G ++ A +   +M  +N++ + V YT++I G C       A+++  EM+  G
Sbjct: 317 LIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVG 376

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
           ++P+  T+ +I++E CK G +   S LL  M + G  P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%)

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
           + D   ++ +I    + GF+  A E F   ++        T   V+  F     +     
Sbjct: 63  RSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWG 122

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
            + E+++ G   ++  FN++M   CK G+M  A S+ D + + G+RP   ++NTL++G+ 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 237 LTGRVNHAKELFVSMESMG 255
             G ++    L  +M   G
Sbjct: 183 RLGDLDEGFRLKSAMHGSG 201


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P+ A+ +F  + R H     +  FN +L  L K++H     SL + L      PD+ T++
Sbjct: 143 PDIAVRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVRALERR-FPPDVVTYN 201

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
            L + +C+    S    +L ++  S  TP                 TYN I+ G  + G 
Sbjct: 202 TLADGWCRAKDTSRALDLLRQMAESGVTPT--------------KTTYNIILKGFFRAGQ 247

Query: 136 VDKAKELFLKMK-----DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           +  A   FL+MK     D++ KP++V+YT++I G   A   ++A++LF EM  +G  P+V
Sbjct: 248 IQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSV 307

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+N ++  +CK G +++A ++ D M++    P+  TY  L+ G C  G+++ A +L   
Sbjct: 308 ATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMER 367

Query: 251 MESMGC 256
           M+  GC
Sbjct: 368 MKGEGC 373



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 67/286 (23%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP V ++N +     + K     L L +++  +G+ P   T++I++  F + G++ H + 
Sbjct: 194 PPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWN 253

Query: 93  VLGRILR------SCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
              ++ +      SC  PD+V++T++I                     + C P   TYN 
Sbjct: 254 FFLQMKKRGAKDESC-KPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNA 312

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           +I  +CK+G V+ A  +F  M  K+  PNVVTYT +IRG C+    + A +L   M  +G
Sbjct: 313 LIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEG 372

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLM----------------------------- 216
            +P V T+NV++    + G++++A  L + M                             
Sbjct: 373 CEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDM 432

Query: 217 ----------IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
                     ++ G  P  F  N +L+G  LTG    +++L    E
Sbjct: 433 ATAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLRMQE 478


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 22/244 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V S  +++    K+  +    S   R+   GLFP+   ++ LI+C CK G ++     
Sbjct: 27  PDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESY 86

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
           L R+ + C  P+VV++  +I   CK                    P    Y++I+   CK
Sbjct: 87  LKRMPQHC-APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCK 145

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V KA ++F +M  K  +P++V +  ++ G   A   +EA+ LF  M  +G +P+VVT
Sbjct: 146 TGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVT 205

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LCK  K+DEA  LL+ M Q  V P   TY TL+D  C   R+  A E+F  M 
Sbjct: 206 YNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMA 265

Query: 253 SMGC 256
              C
Sbjct: 266 EGPC 269



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 23/246 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P + +FN++L  L + +       LF+ +NS G  PD+ T++ +I   CK  ++     +
Sbjct: 166 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 225

Query: 94  LGRILRSCFTPDVVTFTSLIK-----------------------VCKPDAITYNTIIDGL 130
           L R+ +   +P  VT+T+LI                         C   A +   +I+GL
Sbjct: 226 LERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGL 285

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
           CK     +AKE+F +M+ + + P VVTY +++ G        +A  L   M+DQ   PN+
Sbjct: 286 CKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNM 345

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            T+ +++  LCK  +++EA  LL  M   G  P    +  LL      GR++ A EL+  
Sbjct: 346 FTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE 405

Query: 251 MESMGC 256
           M  + C
Sbjct: 406 MSRINC 411



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 51/260 (19%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +++ ++    K  +    + +F  + + G  PD+   ++L++   +  ++ H   
Sbjct: 130 PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKI-HEAR 188

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
            L R + S             + CKPD +TYNT+I GLCK   +D+A  L  +MK ++V 
Sbjct: 189 ELFRSMNS-------------RGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVS 235

Query: 153 PNVVTYTS-------------------------------------VIRGFCYANDWNEAK 175
           P  VTYT+                                     +I G C A    EAK
Sbjct: 236 PTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAK 295

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +F EM  +G+ P VVT+N +++ L    K+ +A  L   M+     P+ FTY  L+   
Sbjct: 296 EMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSL 355

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C T +V  A +L  +M   G
Sbjct: 356 CKTDQVEEAFKLLSAMRDKG 375



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 58/272 (21%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++N M+  L K K  D  + L +R+    + P   T++ LI+  CK  R+   + V
Sbjct: 201 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEV 260

Query: 94  LGRILRS---CFTPDVVTFTSLIKVCK--------------------PDAITYNTIIDGL 130
             ++      C  P       +  +CK                    P  +TYNT+++GL
Sbjct: 261 FEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 320

Query: 131 CKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN- 189
                +  A EL   M D+   PN+ TY  +I   C  +   EA +L   M D+G  P+ 
Sbjct: 321 LSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSL 380

Query: 190 ----------------------------------VVTFNVIMDELCKNGKMDEASSLLDL 215
                                             V + N+++D + + G +DEA   L  
Sbjct: 381 KIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQ 440

Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
           M   G+ PD FTY+ L+ G C  G+ + A++L
Sbjct: 441 MTDTGIVPDKFTYDKLVVGLCWQGKADQARKL 472



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 16  PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
           P EA  +F  M     SP  V+   ++ G L+  K  D +   +  L+     P+++T+ 
Sbjct: 291 PGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPA-PNMFTYE 349

Query: 76  ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
           ILI+  CK  +V   F +L  +    F P        +K+       +  ++  L + G 
Sbjct: 350 ILISSLCKTDQVEEAFKLLSAMRDKGFVPS-------LKI-------WEVLLSRLARAGR 395

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +D A EL+ +M   N +  V +   ++ G       +EAK    +M D G+ P+  T++ 
Sbjct: 396 LDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDK 455

Query: 196 IMDELCKNGKMDEASSLLDLMIQHG 220
           ++  LC  GK D+A  L++ +++ G
Sbjct: 456 LVVGLCWQGKADQARKLVEELVRDG 480



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
           I  L +   V +A+ +  +MK     P+V ++  +IRGF  +  +         M++ G+
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
            PN + +N ++  LCK G + EA S L  M QH   P+  +YN ++DG+C    +  A  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA-PNVVSYNIIIDGYCKARNIEKALA 119

Query: 247 LFVSMESMG 255
               ME +G
Sbjct: 120 FLREMEELG 128


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++   +  L K       + +F+ +   GL P+    + LI+  CK G V+ G  +
Sbjct: 310 PDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLEL 369

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
              +       D+V + +L+                        KPD +TY T+IDG CK
Sbjct: 370 RWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCK 429

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G +D A E+  +M D+ V  + VTYT++I G   A    +A+R+  EMM+ G+QP+  T
Sbjct: 430 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 489

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  CKNG +      L  M   G  P   TYN +++GFC  G++ +A  L  +M 
Sbjct: 490 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAML 549

Query: 253 SMG 255
           ++G
Sbjct: 550 NIG 552



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP    FN+++  + ++    +  ++F  +   G+ P + T + L++  CK   +++   
Sbjct: 239 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANA 298

Query: 93  VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
           + G + ++   PDV T+ + I+ +CK                    P+ +   T+ID  C
Sbjct: 299 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 358

Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
           K+G V    EL  +M  + VK ++V Y +++ GFC   D   A  +  EM   G++P+ V
Sbjct: 359 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 418

Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           T+  ++D  CK G++D A  +   M   GV  D  TY  L+ G    GR   A+ +   M
Sbjct: 419 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 478

Query: 252 ESMG 255
              G
Sbjct: 479 MEAG 482



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 57  SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVC 116
           + +  L   G+ P+    ++L+    + G+++    V   +LR    P VVTF       
Sbjct: 228 AFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTF------- 280

Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
                  NT++ G+CK   ++ A  L   M    + P+V TY + I+G C      +A  
Sbjct: 281 -------NTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 333

Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           +F EM ++G+ PN V    ++D  CK G +     L   M   GV+ D   YN L++GFC
Sbjct: 334 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFC 393

Query: 237 LTGRVNHAKELFVSMESMG 255
               +  A ++   M   G
Sbjct: 394 RVRDMKAANDIVEEMRKDG 412



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%)

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           V +A   +L + D  V P    +  ++R    +     A+ +F EM+ +GVQP VVTFN 
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +M  +CK   ++ A++L  LM + G+ PD +TY   + G C TGR+  A E+F  M
Sbjct: 283 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 338



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  +++ +++    KN    T     K + + G  P + T+++++N FC +G++ +  ++
Sbjct: 485 PDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADML 544

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L  +L              I VC P+ ITYN ++DG CK G V   +EL      K +  
Sbjct: 545 LNAMLN-------------IGVC-PNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVS 587

Query: 154 NVVTYTSVIRGF 165
           +   YTS+I  F
Sbjct: 588 DFGVYTSLINEF 599


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 120/243 (49%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++N +L    K     + L +   +   G+  DLYT++I+I+  CK+ R +  +++
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 94  LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
           L R+     TPD  ++ +LI                     +  KP   TY  +IDG C+
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G  D+A+ +  +M+   V+P+ +TY++++ G+C  +    A  L   +  + +  N   
Sbjct: 382 NGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTM 441

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           + +++D  C+ G++ +A  +L  M+  G+ PD  TY+ L++G C  G ++  KE+   M+
Sbjct: 442 YTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 501

Query: 253 SMG 255
             G
Sbjct: 502 KSG 504



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 135/306 (44%), Gaps = 62/306 (20%)

Query: 7   GEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG 66
           GEG I     N A+ IF+ MLR     P V+++  ++    +N   D    +   +  TG
Sbjct: 346 GEGKI-----NLAIYIFNQMLR-QSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITG 399

Query: 67  LFPDLYTHSILINCFCKMGRVSHGFVVLG-------RILRSCFTPDVVTFTSLIKVCK-- 117
           + P   T+S L+N +CK  ++     ++         I R+ +T  +  F  L +V K  
Sbjct: 400 VRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAK 459

Query: 118 ------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
                       PD ITY+ +I+G+CK G + + KE+  +M+   V PN V YT+++  F
Sbjct: 460 QILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYF 519

Query: 166 CYANDWNEAKRLFIEMMDQGVQPN-----------------------------------V 190
           C A    EA + F+++   G+  N                                   V
Sbjct: 520 CKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDV 579

Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
            +FN I+D  C+ G + EA S+ D M++HG  PD  TY +LL G C  G +  AKE  V 
Sbjct: 580 ASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVY 639

Query: 251 MESMGC 256
           +    C
Sbjct: 640 LLEKAC 645



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 21/239 (8%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           ++NIM+  L K K       L KR+    L PD  +++ LI+ F   G+++    +  ++
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 98  LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
           LR    P V T+T+LI   C+                    P  +TY+ +++G CK   +
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKL 420

Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
             A +L   ++ +++  N   YT +I GFC   + ++AK++   M+  G+ P+V+T++ +
Sbjct: 421 GPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480

Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++ +CK G + E   +L  M + GV P+   Y TL+  FC  G    A + FV +   G
Sbjct: 481 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSG 539



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 38  SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
           + N +L  + K+   D  L L +++ +  + PD YT++IL++ FCK G+V    ++L  +
Sbjct: 651 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710

Query: 98  LRSCFTPDVVTFTSLIK------------------VCK----PDAITYNTIIDGLCKQGF 135
           L     PD + +T L+                   +CK     D I YN++++G  K G 
Sbjct: 711 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 770

Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
           +++ + L   M +  V P+  +Y  ++ G+      +    L+ +M+ +G++P+ VT+ +
Sbjct: 771 INEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRL 830

Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           ++  LC+ G ++ A   L+ M+  GV PD   ++ L+  F    ++++A +LF  M+ +G
Sbjct: 831 LIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVG 890



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 4/234 (1%)

Query: 26   MLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCK 83
            M  MH +   P  +S+NI++    K       L L++ +   G+ PD  T+ +LI   C+
Sbjct: 778  MRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCE 837

Query: 84   MGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTI--IDGLCKQGFVDKAKE 141
             G +      L +++     PD + F  LIK     +   N +     +   G +D A E
Sbjct: 838  YGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFE 897

Query: 142  LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
            L   MK   V P+ V  +S++RG C      EA  +F  +M  G+ P + TF  +M  LC
Sbjct: 898  LKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLC 957

Query: 202  KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
            K  K+D+A  L  LM   G++ D  TYN L+ G C    +  A +L+  M+S G
Sbjct: 958  KEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKG 1011



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++  + K         +  R+  +G+ P+   ++ L+  FCK G        
Sbjct: 472 PDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKY 531

Query: 94  LGRILRSCFTPDVVTFTSLI-------KVCKP--------------DAITYNTIIDGLCK 132
              I RS    + V   +L+        + +               D  ++N IID  C+
Sbjct: 532 FVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQ 591

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           +G V +A  ++  M      P++ TY S++RG C      +AK   + ++++    +  T
Sbjct: 592 RGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKT 651

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
            N ++  +CK+G +DEA  L + M+   + PD +TY  LLDGFC  G+V  A  L   M 
Sbjct: 652 LNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMML 711

Query: 253 SMG 255
             G
Sbjct: 712 EKG 714



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 22/204 (10%)

Query: 70  DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------- 113
           D+ + + +I+ +C+ G V   F V   ++R  + PD+ T+ SL+                
Sbjct: 578 DVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFM 637

Query: 114 -----KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYA 168
                K C  D  T NT++ G+CK G +D+A +L  KM  +N+ P+  TYT ++ GFC  
Sbjct: 638 VYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKR 697

Query: 169 NDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFT 227
                A  L   M+++G+ P+ + +  +++ L   G++  AS +  +++ + G+  D   
Sbjct: 698 GKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIA 757

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
           YN++++G+   G++N  + L  +M
Sbjct: 758 YNSMMNGYLKGGQINEIERLMRNM 781



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 14/201 (6%)

Query: 23   FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
            FD +++       +S+   +   +      D    L + + + G+ P     S ++   C
Sbjct: 863  FDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLC 922

Query: 83   KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKEL 142
            K G+V    +V   I+R+   P + TFT              T++ GLCK+  +D A  L
Sbjct: 923  KCGKVEEAIIVFSSIMRAGMVPTIATFT--------------TLMHGLCKEFKIDDAFHL 968

Query: 143  FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
               M+   +K +VVTY  +I G C      +A  L+ EM  +G+ PN+ T+  +   +  
Sbjct: 969  KQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYA 1028

Query: 203  NGKMDEASSLLDLMIQHGVRP 223
             G M +   LL  +   G+ P
Sbjct: 1029 TGTMQDGEKLLKDIEDRGIVP 1049



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 62  LNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---CKP 118
           +  +GL    + + + ++   +    S    VL  +  + F+   + F+SL++    C P
Sbjct: 99  VQQSGLDRITHIYCMAVHILVQAQMPSQAMSVLRHLALTGFSCSAI-FSSLLRTISRCDP 157

Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
            +  + + +++   K+G V  A      M +   K ++ +  +++      N        
Sbjct: 158 TNLFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLF 217

Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
             E +D+    +V T N++++ LC  GK+ +A S+L  M ++   P+A TYNT+L+ +  
Sbjct: 218 LKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-KNCRLPNAVTYNTILNWYVK 276

Query: 238 TGRVNHAKELFVSMESMG 255
            GR   A  +   ME  G
Sbjct: 277 KGRCKSALRILDDMEKNG 294


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 27/239 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++  L++    D  L L   LNS    PD    + ++  FC+  R      +
Sbjct: 177 PDTVNYNIIINSLSERGRVDDALRL---LNSMVCKPDALGFNAVLKGFCRAERWHDASEL 233

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           + ++ R       +TF  LI +                     C PD +TY+++++G  +
Sbjct: 234 IAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSE 293

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG V+ A +LF  M     KP++ +Y +V++G C A  W +A  L  EM+ +   PN VT
Sbjct: 294 QGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVT 350

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           FN++++ LC+ G +D A  +L+ M  +G  PD FTYN L++GF   GR++ A +L  +M
Sbjct: 351 FNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM 409



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 24/204 (11%)

Query: 69  PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------- 115
           PD YT++ ++   C   +      ++  ++R+   P+ VTF + I+              
Sbjct: 5   PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 64

Query: 116 --------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
                   C PD + Y+T+I+G  +QG VD+A +L   M     KPN V Y + ++G C 
Sbjct: 65  LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCI 121

Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
           A  W +   L  EM+ +G  PN  TF++++  LC+N  +D A  +L+ M ++G  PD   
Sbjct: 122 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVN 181

Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
           YN +++     GRV+ A  L  SM
Sbjct: 182 YNIIINSLSERGRVDDALRLLNSM 205



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 20/219 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +F   +    +N   D  + L  ++   G  PD+  +S LIN F + G V     
Sbjct: 39  PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALD 98

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +L                 CKP+ + YN  + GLC     +   EL  +M  K   
Sbjct: 99  LLNTML-----------------CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCS 141

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN  T++ +I   C  N  + A  +  +M   G +P+ V +N+I++ L + G++D+A  L
Sbjct: 142 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 201

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L+ M+    +PDA  +N +L GFC   R + A EL   M
Sbjct: 202 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM 237



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F++++  L +N   D+ + + +++   G  PD   ++I+IN   + GRV     +
Sbjct: 142 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 201

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCK 132
           L  ++     PD + F +++K  C+ +                     +T+N +ID LC+
Sbjct: 202 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 258

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+ A ++F +M      P++VTY+S++ GF        A +LF  M     +P++ +
Sbjct: 259 NGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFS 315

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  + ++A  L+  M+     P+  T+N L++  C  G V+ A E+   M 
Sbjct: 316 YNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMP 375

Query: 253 SMG 255
           + G
Sbjct: 376 NYG 378



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R  P  P + S+N +L  L +   ++    L   +      P+  T +ILIN  C+ G
Sbjct: 303 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 362

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     VL ++     TPD+               TYN +I+G  +QG +D A +L   
Sbjct: 363 LVDRAIEVLEQMPNYGSTPDI--------------FTYNALINGFSEQGRLDDALKLLST 408

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           M   + KP+ ++Y S ++G C A  W +A+ L  EM+     PN VTF
Sbjct: 409 M---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 453



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%)

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P+  TY +V++G C A  W EA+ L  EM+     PN VTF   +   C+NG +D A 
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            LLD M ++G  PD   Y+TL++GF   G V+ A +L  +M
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM 103


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 33/281 (11%)

Query: 2   RLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKR 61
           +L+   E        + A   FD +L   P+   +   N  L   A++      +SLF+R
Sbjct: 21  KLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDAARHSPA-VAISLFRR 78

Query: 62  L---NSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV--- 115
           +       + P+L T+S++I+C  ++G +   F  LGR++RS +T + +TF+ L+K    
Sbjct: 79  MVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCD 138

Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKM-----KDKNV 151
                              C P+  +Y  ++ GLC +    +A  L   M          
Sbjct: 139 KKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGY 198

Query: 152 KPNVVTYTSVIRGFCY-ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
            P+VV+Y +VI G        + A  LF +M+DQG+ P+VVT+N I+  L K   MD+A+
Sbjct: 199 PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAA 258

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
            +L  M+++G  P+  T+N+LL G+C +G+ N A  +F  M
Sbjct: 259 VVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 31/243 (12%)

Query: 38  SFNIMLGCLAKNKHYDTVLSL-FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
           +F+ +L  L   K     + +  +R+   G  P++++++IL+   C   R      +L  
Sbjct: 128 TFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHT 187

Query: 97  IL-----RSCFTPDVVTFTSLI----------------------KVCKPDAITYNTIIDG 129
           ++     R  + PDVV++ ++I                      +   PD +TYN+II  
Sbjct: 188 MMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISA 247

Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
           L K   +DKA  + ++M      PN +T+ S++ G+C +   N+A  +F  M   GV+P+
Sbjct: 248 LSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPD 307

Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKE 246
           V T+N +M  LCKNG+  EA  + D M++ G +P++ TY TLL G+   G   +++H  +
Sbjct: 308 VFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLD 367

Query: 247 LFV 249
           + V
Sbjct: 368 MMV 370



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 15/190 (7%)

Query: 33  PPPVSSFNIML-GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
           PP V S+N ++ G L + +  DT   LF ++   GL PD+ T++ +I+   K   +    
Sbjct: 199 PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAA 258

Query: 92  VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
           VVL R++++                 P+ IT+N+++ G C  G  + A  +F +M    V
Sbjct: 259 VVLVRMVKNG--------------AMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGV 304

Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
           +P+V TY +++   C      EA+++F  M+ +G +PN  T+  ++      G + +   
Sbjct: 305 EPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHH 364

Query: 212 LLDLMIQHGV 221
           LLD+M+++G+
Sbjct: 365 LLDMMVRNGI 374


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 128/286 (44%), Gaps = 56/286 (19%)

Query: 27  LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
           +R    PP V  +N ++  L K +     L + K++ + G  PD  T S LI+  C+ GR
Sbjct: 355 MRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGR 414

Query: 87  VS-------------------------HGFVVLGRILRSC----------FTPDVVTFTS 111
           V                          HGF V G ++ +            TPDVVTF +
Sbjct: 415 VQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGA 474

Query: 112 LI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
           LI                     +   PDA  YN +I GLCK+  +  A+ L  +M ++N
Sbjct: 475 LIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQN 534

Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
           V P+   YT++I GF      +EA+++F  M  +G+ P+VV +N ++   C+ G M+EA 
Sbjct: 535 VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAV 594

Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
             +  M + G  PD FTY TL+ G+   G ++ A  L   M    C
Sbjct: 595 ECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRC 640



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 49/257 (19%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V ++  ++  L +    + + SL   +    L P++  ++ +I+  CK    S   VV
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 94  LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
           L ++                  C PDAIT++T+I GLC++G V +A+ L  +     + P
Sbjct: 387 LKQMFAGG--------------CDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNP 432

Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF-------------------- 193
           N+ +YTS+I GFC   +   A  L +EMM++G  P+VVTF                    
Sbjct: 433 NLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVR 492

Query: 194 ---------------NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
                          NV++  LCK   +  A +L++ M++  V PD + Y TL+DGF   
Sbjct: 493 EKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRN 552

Query: 239 GRVNHAKELFVSMESMG 255
             ++ A+++F  ME  G
Sbjct: 553 ESLDEARKIFEFMEQKG 569



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  + +N+++  L K K      +L + +    + PD Y ++ LI+ F +   +     +
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
              + +    PDVV + ++IK  C+                    PD  TY T+I G  K
Sbjct: 562 FEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAK 621

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG +  A  L   M  +  +PNVV Y+S+I G+C   D + A+ LF  M  QG+ PNV+T
Sbjct: 622 QGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVIT 681

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
           + +++  L K  K+  A+   + M+ +   P+ +T ++L+ G C
Sbjct: 682 YTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLC 725



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 14/200 (7%)

Query: 56  LSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
           L L +     G  P+   +++LI+ +C+ G V  G ++LG +      P VVT       
Sbjct: 279 LKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVT------- 331

Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
                  Y T++  L ++G ++K   L  +M+++ + PNV  Y SVI   C     ++A 
Sbjct: 332 -------YGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQAL 384

Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
            +  +M   G  P+ +TF+ ++  LC+ G++ EA  LL    +  + P+  +Y +L+ GF
Sbjct: 385 VVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGF 444

Query: 236 CLTGRVNHAKELFVSMESMG 255
           C+ G V  A  L V M   G
Sbjct: 445 CVRGEVIVASNLLVEMMERG 464



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 30  HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
           H + P  +  N +L  L + + +D    L+  + +     D Y+  +++   C  G V  
Sbjct: 218 HGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEK 277

Query: 90  GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
           G     +++ + +             C P+A+ YN +IDG C++G V +   L  +M+ K
Sbjct: 278 GL----KLIEARWGAG----------CVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAK 323

Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
            + P VVTY +++       D  +   L  EM ++ + PNV  +N ++D LCK     +A
Sbjct: 324 GLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQA 383

Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
             +L  M   G  PDA T++TL+ G C  GRV  A+ L 
Sbjct: 384 LVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLL 422



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 23/251 (9%)

Query: 22  IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
           + + M R H   P V +F  ++  L         L + +++ +  L PD   +++LI+  
Sbjct: 457 LVEMMERGHT--PDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGL 514

Query: 82  CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDA 120
           CK   +     ++  +L     PD   +T+LI                     K   PD 
Sbjct: 515 CKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDV 574

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           + YN +I G C+ G +++A E    M+     P+  TYT++I G+    + + A  L  +
Sbjct: 575 VGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCD 634

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
           MM +  QPNVV ++ +++  CK G  D A  L   M   G+ P+  TY  L+       +
Sbjct: 635 MMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDK 694

Query: 241 VNHAKELFVSM 251
           V  A   F  M
Sbjct: 695 VVRAAMYFEYM 705



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 111/281 (39%), Gaps = 71/281 (25%)

Query: 39  FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
           +  ++    +N+  D    +F+ +   G+ PD+  ++ +I  +C+ G ++     +  + 
Sbjct: 542 YTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMR 601

Query: 99  RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
           +    PD  T+T+LI                     + C+P+ + Y+++I+G CK G  D
Sbjct: 602 KVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTD 661

Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGF--------------------CYANDW------ 171
            A+ LF  M+ + + PNV+TYT +I                       C  ND+      
Sbjct: 662 AAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLV 721

Query: 172 ------------------------NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
                                        +F  +++    P    +N I+  LC +  + 
Sbjct: 722 TGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLG 781

Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
           EA  L + M   G +PD+ T+ +LL GFC  G+    + + 
Sbjct: 782 EALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTIL 822



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%)

Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
           ++ GLC +G V+K  +L          PN V Y  +I G+C   D      L  EM  +G
Sbjct: 265 MVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKG 324

Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
           + P VVT+  +M  L + G +++ +SLL  M +  + P+   YN+++D  C     + A 
Sbjct: 325 LLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQAL 384

Query: 246 ELFVSMESMGC 256
            +   M + GC
Sbjct: 385 VVLKQMFAGGC 395



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 57/231 (24%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P V +++ ++    K    D    LF  + S GLFP++ T++ILI    K  +V    + 
Sbjct: 642 PNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMY 701

Query: 94  LGRILRSCFTPDVVTFTSLIK------------------------------------VCK 117
              +L +  +P+  T  SL+                                      C 
Sbjct: 702 FEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCD 761

Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY---ANDW--- 171
           P    YN II  LC    + +A +L  KM +K  KP+  T+ S++ GFC    + +W   
Sbjct: 762 PRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTI 821

Query: 172 --NEAKRLFIE-------MMDQGVQPNV-----VTFNVIMDELCKNGKMDE 208
             NE +R  +E       + DQ V  +V       F + ++E C++ K  E
Sbjct: 822 LPNEFQRDELEVASRYKILFDQYVVKSVGCEVYSVFQLYLEE-CRSSKQME 871



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 16/230 (6%)

Query: 31  PSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLN----STGLFPDLYTHSILINCFCKMGR 86
           PSP P +     +  LA   H   +LS  +  +    +         HS L+    + GR
Sbjct: 106 PSPLPDARLADAVASLADPDHALALLSWSRSRSRHEAAALPAATPLAHSALLRLLARAGR 165

Query: 87  VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
               F  +   LR     D+    +   V  P       ++      G   KA E+  + 
Sbjct: 166 ----FDAVDATLR-----DMSLAGAAAAV--PTRACLGALVATYADAGMEAKAAEMCQRA 214

Query: 147 KDKN-VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 205
           ++ +   P       ++R       W++A++L+ EM+ +    +  +  V++  LC  G 
Sbjct: 215 REHHGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGLCLEGL 274

Query: 206 MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
           +++   L++     G  P+A  YN L+DG+C  G V     L   ME+ G
Sbjct: 275 VEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKG 324


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 27/239 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P   ++NI++  L++    D  L L   LNS    PD    + ++  FC+  R      +
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRL---LNSMVCKPDALGFNAVLKGFCRAERWHDASEL 416

Query: 94  LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
           + ++ R       +TF  LI                       C PD +TY+++++G  +
Sbjct: 417 IAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSE 476

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
           QG V+ A +LF  M     KP++ +Y +V++G C A  W +A  L  EM+ +   PN VT
Sbjct: 477 QGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVT 533

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           FN++++ LC+ G +D A  +L+ M  +G  PD FTYN L++GF   GR++ A +L  +M
Sbjct: 534 FNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM 592



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 27/237 (11%)

Query: 36  VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
           V ++  ++    ++   D  L L   + S  + PD YT++ ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 96  RILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQG 134
            ++R+   P+ VTF + I+                      C PD + Y+T+I+G  +QG
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
            VD+A +L   M     KPN V Y + ++G C A  W +   L  EM+ +G  PN  TF+
Sbjct: 275 HVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFS 331

Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           +++  LC+N  +D A  +L+ M ++G  PD   YN +++     GRV+ A  L  SM
Sbjct: 332 MLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM 388



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 20/219 (9%)

Query: 33  PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
           PP   +F   +    +N   D  + L  ++   G  PD+  +S LIN F + G V     
Sbjct: 222 PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALD 281

Query: 93  VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
           +L  +L                 CKP+ + YN  + GLC     +   EL  +M  K   
Sbjct: 282 LLNTML-----------------CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCS 324

Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
           PN  T++ +I   C  N  + A  +  +M   G +P+ V +N+I++ L + G++D+A  L
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           L+ M+    +PDA  +N +L GFC   R + A EL   M
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM 420



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 34  PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
           P  ++F++++  L +N   D+ + + +++   G  PD   ++I+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 94  LGRILRSCFTPDVVTFTSLIK-VCKPD--------------------AITYNTIIDGLCK 132
           L  ++     PD + F +++K  C+ +                     +T+N +ID LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQ 441

Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
            G V+ A ++F +M      P++VTY+S++ GF        A +LF  M     +P++ +
Sbjct: 442 NGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFS 498

Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
           +N ++  LC+  + ++A  L+  M+     P+  T+N L++  C  G V+ A E+   M 
Sbjct: 499 YNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMP 558

Query: 253 SMG 255
           + G
Sbjct: 559 NYG 561



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 33/209 (15%)

Query: 58  LFKRLNSTGLFPD---------------LYTHSILINCFCKMGRVSHGFVVLGRILRSCF 102
           L K+L +TG   D                 +H+ L+  +C+ GR++    VLG   R+  
Sbjct: 96  LIKKLCATGRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLG-AARATG 154

Query: 103 TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
             +VVT+T+LI              DG C+ G +D A  L   M    V P+  TY +V+
Sbjct: 155 AANVVTYTALI--------------DGYCRSGRLDDALRLIASMP---VAPDTYTYNTVL 197

Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
           +G C A  W EA+ L  EM+     PN VTF   +   C+NG +D A  LLD M ++G  
Sbjct: 198 KGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCT 257

Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
           PD   Y+TL++GF   G V+ A +L  +M
Sbjct: 258 PDVVIYSTLINGFSEQGHVDQALDLLNTM 286



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 26  MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
           + R  P  P + S+N +L  L +   ++    L   +      P+  T +ILIN  C+ G
Sbjct: 486 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 545

Query: 86  RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK 145
            V     VL ++     TPD+               TYN +I+G  +QG +D A +L   
Sbjct: 546 LVDRAIEVLEQMPNYGSTPDI--------------FTYNALINGFSEQGRLDDALKLLST 591

Query: 146 MKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
           M   + KP+ ++Y S ++G C A  W +A+ L  EM+     PN VTF
Sbjct: 592 M---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
           I+ N +I  LC  G +  A E  L         + V++ +++ G+C      +A+R+   
Sbjct: 91  ISCNILIKKLCATGRLADA-ERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGA 149

Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
               G   NVVT+  ++D  C++G++D+A   L L+    V PD +TYNT+L G C+  +
Sbjct: 150 ARATGAA-NVVTYTALIDGYCRSGRLDDA---LRLIASMPVAPDTYTYNTVLKGLCIAKK 205


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.140    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,907,311,807
Number of Sequences: 23463169
Number of extensions: 150388067
Number of successful extensions: 615160
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8946
Number of HSP's successfully gapped in prelim test: 3737
Number of HSP's that attempted gapping in prelim test: 436115
Number of HSP's gapped (non-prelim): 78094
length of query: 256
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 117
effective length of database: 9,097,814,876
effective search space: 1064444340492
effective search space used: 1064444340492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)