BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047518
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 161/277 (58%), Gaps = 25/277 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL + DI N+A+ +F M++ P P V FN +L + K K YD V+SL K
Sbjct: 54 ERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGK 109
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
++ G+ DLYT +I+INCFC +VS +LG++L+ + PD VT SL+ C
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
KPD + YN IID LCK V+ A + F +++ K ++PNVVTYT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
+++ G C ++ W++A RL +M+ + + PNV+T++ ++D KNGK+ EA L + M++
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ PD TY++L++G CL R++ A ++F M S GC
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 57/295 (19%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ + D M+ + P V+ +N ++ L K K + FK + G+ P++ T++
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVA-YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 77 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 101
L+N C R S FV G++L R
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAK 140
PD+VT++SLI K C D ++YNT+I+G CK V+
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
+LF +M + + N VTY ++I+GF A D ++A+ F +M G+ P++ T+N+++ L
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
C NG++++A + + M + + D TY T++ G C TG+V A LF S+ G
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 15/238 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA +F+ M+RM P V+ ++ ++ L + D +F + S G D+ +++ L
Sbjct: 278 EAKELFEEMVRMSIDPDIVT-YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
IN FCK RV G ++ R +V+ T +TYNT+I G + G VD
Sbjct: 337 INGFCKAKRVEDGM----KLFREMSQRGLVSNT----------VTYNTLIQGFFQAGDVD 382
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
KA+E F +M + P++ TY ++ G C + +A +F +M + + ++VT+ ++
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+CK GK++EA SL + G++PD TY T++ G C G ++ + L+ M+ G
Sbjct: 443 RGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 155/266 (58%), Gaps = 22/266 (8%)
Query: 12 TTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
+++ E + +F M++ P P V F+ +L +AK+K+YD V+SLF + G+ DL
Sbjct: 46 SSMNLEEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDL 104
Query: 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC-------------- 116
Y+++I+INC C+ R V+G++++ + PDVVT +SLI C
Sbjct: 105 YSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK 164
Query: 117 ------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAND 170
+PD + YNTIIDG CK G V+ A ELF +M+ V+ + VTY S++ G C +
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224
Query: 171 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
W++A RL +M+ + + PNV+TF ++D K GK EA L + M + V PD FTYN+
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284
Query: 231 LLDGFCLTGRVNHAKELFVSMESMGC 256
L++G C+ GRV+ AK++ M + GC
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGC 310
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 24/248 (9%)
Query: 29 MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVS 88
M P V +F ++ K + + L++ + + PD++T++ LIN C GRV
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296
Query: 89 HGFVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTII 127
+L ++ PDVVT+ +LI CK D ITYNTII
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356
Query: 128 DGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
G + G D A+E+F +M + +PN+ TY+ ++ G C +A LF M ++
Sbjct: 357 QGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIE 413
Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
++ T+N+++ +CK G +++A L + G++PD +Y T++ GFC + + + L
Sbjct: 414 LDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLL 473
Query: 248 FVSMESMG 255
+ M+ G
Sbjct: 474 YRKMQEDG 481
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 19/225 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ +++ M R P V ++N ++ L + D + + + G PD+ T++
Sbjct: 261 SEAMKLYEEMTR-RCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----VCKPDAI----------- 121
LIN FCK RV G + + + D +T+ ++I+ +PDA
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 379
Query: 122 ---TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
TY+ ++ GLC V+KA LF M+ ++ ++ TY VI G C + +A LF
Sbjct: 380 NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLF 439
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
+ +G++P+VV++ ++ C+ + D++ L M + G+ P
Sbjct: 440 RSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 151/261 (57%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
NEAL +F +M+ P P + F +L +AK K +D V++L L G+ DLYT ++
Sbjct: 54 NEALDLFTHMVESRPLPSIID-FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
L+NCFC+ + LG++++ F PD+VTFTSLI C
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KPD + Y TIID LCK G V+ A LF +M++ ++P+VV YTS++ G C + W +A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L M + ++P+V+TFN ++D K GK +A L + MI+ + P+ FTY +L++GF
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C+ G V+ A+++F ME+ GC
Sbjct: 293 CMEGCVDEARQMFYLMETKGC 313
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 33/282 (11%)
Query: 3 LKSSGEGDITTITP-----------NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
+K E DI T T EA+ + + M+ M P V + ++ L KN H
Sbjct: 134 MKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPD-VVMYTTIIDSLCKNGH 192
Query: 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTS 111
+ LSLF ++ + G+ PD+ ++ L+N C GR +L + + PDV+TF +
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 112 LIKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
LI P+ TY ++I+G C +G VD+A+++F M+ K
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 151 VKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 210
P+VV YTS+I GFC ++A ++F EM +G+ N +T+ ++ + GK + A
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372
Query: 211 SLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+ M+ GV P+ TYN LL C G+V A +F M+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ 414
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA +F Y++ P V ++ ++ K K D + +F ++ GL + T++
Sbjct: 299 DEARQMF-YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTT 357
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------KVCK------------ 117
LI F ++G+ + V ++ P++ T+ L+ KV K
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 118 -----PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
P+ TYN ++ GLC G ++KA +F M+ + + ++TYT +I+G C A
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGV 221
A LF + +GV+PNVVT+ ++ L + G EA L M + GV
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y ++R ++ +NEA LF M++ P+++ F +++ + K K D +L D +
Sbjct: 40 YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
GV D +T N L++ FC + + A M +G
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 61/304 (20%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S I I ++A+ +F M+R P P V F+ +A+ K ++ VL K
Sbjct: 58 ERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFCK 112
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------ 114
+L G+ ++YT +I+INCFC+ + + VLG++++ + PD TF +LIK
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 172
Query: 115 ---------------VCKPDAITYN----------------------------------- 124
C+PD +TYN
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232
Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
TIID LC+ G +D A LF +M+ K +K +VVTY S++RG C A WN+ L +M+ +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292
Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
+ PNV+TFNV++D K GK+ EA+ L MI G+ P+ TYNTL+DG+C+ R++ A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352
Query: 245 KELF 248
+
Sbjct: 353 NNML 356
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 23/253 (9%)
Query: 23 FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
D + +M V +++ ++ L ++ D +SLFK + + G+ + T++ L+
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272
Query: 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPD 119
CK G+ + G ++L ++ P+V+TF L+ V P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
ITYNT++DG C Q + +A + M P++VT+TS+I+G+C ++ ++F
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392
Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
+ +G+ N VT+++++ C++GK+ A L M+ HGV PD TY LLDG C G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452
Query: 240 RVNHAKELFVSME 252
++ A E+F ++
Sbjct: 453 KLEKALEIFEDLQ 465
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 17/240 (7%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
+EA + D M+R SP V+ +++ G C+ K D + +F+ ++ GL + T+S
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK--RVDDGMKVFRNISKRGLVANAVTYS 407
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
IL+ FC+ G++ L ++V+ L PD +TY ++DGLC G
Sbjct: 408 ILVQGFCQSGKIK---------LAEELFQEMVSHGVL-----PDVMTYGILLDGLCDNGK 453
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
++KA E+F ++ + +V YT++I G C +A LF + +GV+PNV+T+ V
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++ LCK G + EA+ LL M + G P+ TYNTL+ G + + +L M+S G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
+++I++ ++ LF+ + S G+ PD+ T+ IL++ C G++ + +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
Query: 98 LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
+S +V +T++I K KP+ +TY +I GLCK+G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A L KM++ PN TY ++IR D + +L EM G + + ++
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 584
Query: 197 MDELCKNGKMDEASSLLDLM 216
+D L +G++D+ S LD++
Sbjct: 585 IDMLL-SGELDK--SFLDML 601
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 108 TFTSLIKVCKPDAITYNTIIDG-LC-----KQGFVDKAKE----LFLKMKDKNVKPNVVT 157
T +S C+ D +++I +G +C + G VD K+ LF +M P++V
Sbjct: 34 TISSFFSSCERD---FSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVD 90
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
++ +N ++ G+ N+ T N++++ C+ K A S+L ++
Sbjct: 91 FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 150
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ G PD T+NTL+ G L G+V+ A L M GC
Sbjct: 151 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 157/277 (56%), Gaps = 25/277 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
E+L++ G + +I +A +F M+ P P V F +L A + Y+TV+ +
Sbjct: 40 EKLRT---GFLHSIRFEDAFALFFEMVHSQPLPSIVD-FTRLLTATANLRRYETVIYFSQ 95
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
++ G+ DLY+ +ILI+CFC+ R+S VLG++++ + P +VTF SL+ C
Sbjct: 96 KMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN 155
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
+P+ + YNT+IDGLCK G ++ A EL +M+ K + +VVTY
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYN 215
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
+++ G CY+ W++A R+ +MM + + P+VVTF ++D K G +DEA L MIQ
Sbjct: 216 TLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
V P+ TYN++++G C+ GR+ AK+ F M S GC
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGC 312
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
V ++N +L L + + + + + + PD+ T + LI+ F K G + +
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270
Query: 96 RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
+++S P+ VT+ S+I K C P+ +TYNT+I G CK
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
VD+ +LF +M + ++ TY ++I G+C A +F M+ + V P+++T
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
+++ LC NG+++ A D M + YN ++ G C +V A ELF +
Sbjct: 391 ILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE 450
Query: 255 G 255
G
Sbjct: 451 G 451
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA ++ M++ P V+ +I+ G + YD + F + S G FP++ T++
Sbjct: 263 DEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT-FDLMASKGCFPNVVTYNT 321
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
LI+ FCK V G + R+ F D+ TYNT+I G C+ G +
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADI--------------FTYNTLIHGYCQVGKL 367
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
A ++F M + V P+++T+ ++ G C + A F +M + +V +N++
Sbjct: 368 RVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIM 427
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+ LCK K+++A L + GV+PDA TY ++ G C G A EL M+ G
Sbjct: 428 IHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 170/354 (48%), Gaps = 100/354 (28%)
Query: 2 RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
R SSG GD I N +A+ +F M++ P P + FN +L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102
Query: 54 TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
V+SL +++ G+ +LYT++ILINCFC+ ++S +LG++++
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
+ PD +TFT+LI + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 118 PDAITYNTIIDGLCKQGFVD-----------------------------------KAKEL 142
P+ +TY +++GLCK+G +D A L
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
F +M++K V+PNV+TY+S+I C W++A RL +M+++ + PNVVTFN ++D K
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342
Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 131/243 (53%), Gaps = 21/243 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +++ ++ CL + + L + + P++ T + LI+ F K G++ +
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352
Query: 94 LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
+++ PD+ T++SLI K C P+ +TYNT+I+G CK
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+D+ ELF +M + + N VTYT++I GF A D + A+ +F +M+ GV PN++T
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+N ++D LCKNGK+++A + + + + + P +TYN +++G C G+V +LF S+
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS 532
Query: 253 SMG 255
G
Sbjct: 533 LKG 535
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 22/231 (9%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + +++ ++ + D +F+ + S FP++ T++ L
Sbjct: 348 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVC--------------- 116
IN FCK R+ G + + + + VT+T+LI + C
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TYNT++DGLCK G ++KA +F ++ ++P + TY +I G C A +
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
LF + +GV+P+V+ +N ++ C+ G +EA +L M + G PD+ T
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N+AL +F M+ P P + F +L +AK YD V+SLF+++ G+ P L T +I
Sbjct: 65 NDALDLFTRMVHSRPLPS-IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
+++C C + LG++++ F PD+VTFTSL+ C
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KP+ +TY T+I LCK ++ A ELF +M +PNVVTY +++ G C W +A
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L +MM + ++PNV+TF ++D K GK+ EA L ++MIQ V PD FTY +L++G
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C+ G ++ A+++F ME GC
Sbjct: 304 CMYGLLDEARQMFYLMERNGC 324
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+A+ +FD +L M P V ++ ++ CL KN+H + + LF ++ + G P++ T++ L
Sbjct: 171 DAIALFDQILGM-GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI----KVCK---------------- 117
+ C++GR +L +++ P+V+TFT+LI KV K
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD TY ++I+GLC G +D+A+++F M+ PN V YT++I GFC + + +
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMK 349
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+F EM +GV N +T+ V++ C G+ D A + + M PD TYN LLDG C
Sbjct: 350 IFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409
Query: 237 LTGRVNHAKELFVSME 252
G+V A +F M
Sbjct: 410 CNGKVEKALMIFEYMR 425
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA +++ M++M P V ++ ++ L D +F + G +P+ ++ L
Sbjct: 276 EAKELYNVMIQMSVYPD-VFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
I+ FCK RV G + + + + +T+T LI +
Sbjct: 335 IHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD TYN ++DGLC G V+KA +F M+ + + N+VTYT +I+G C +A
Sbjct: 395 PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFD 454
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
LF + +G++PNV+T+ ++ C+ G + EA SL M + G P+ Y
Sbjct: 455 LFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 35/134 (26%)
Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQ-------------------------------- 184
+Y ++R + +N+A LF M+
Sbjct: 50 SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109
Query: 185 ---GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
G+ P + T N++M +C + + AS L M++ G PD T+ +LL+G+C R+
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169
Query: 242 NHAKELFVSMESMG 255
A LF + MG
Sbjct: 170 EDAIALFDQILGMG 183
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 155/276 (56%), Gaps = 26/276 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S + +I N+AL +F M HP P V F+ +L +AK Y+ V+SLF+
Sbjct: 49 ERLRSG----LHSIKFNDALTLFCDMAESHPLPSIVD-FSRLLIAIAKLNKYEAVISLFR 103
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--- 116
L G+ DLY+ + LI+CFC+ R+S LG++++ F P +VTF SL+ C
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 163
Query: 117 -----------------KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
+P+ + YNTIID LC++G V+ A ++ MK ++P+VVTY
Sbjct: 164 RFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYN 223
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
S+I ++ W + R+ +MM G+ P+V+TF+ ++D K G++ EA + MIQ
Sbjct: 224 SLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR 283
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
V P+ TYN+L++G C+ G ++ AK++ + S G
Sbjct: 284 SVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 22/248 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA+ + D ++ + P V +N ++ L + +T L + K + G+ PD+ T++ L
Sbjct: 167 EAMSLVDQIVGL-GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSL 225
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
I G +L ++R +PDV+TF++LI V
Sbjct: 226 ITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TYN++I+GLC G +D+AK++ + K PN VTY ++I G+C A ++ +
Sbjct: 286 NPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMK 345
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+ M GV + T+N + C+ GK A +L M+ GV PD +T+N LLDG C
Sbjct: 346 ILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLC 405
Query: 237 LTGRVNHA 244
G++ A
Sbjct: 406 DHGKIGKA 413
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 22/258 (8%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
AL M+++ P V+ +++ G N+ Y+ +SL ++ G P++ ++ +I
Sbjct: 133 ALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA-MSLVDQIVGLGYEPNVVIYNTII 191
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CK 117
+ C+ G+V+ VL + + PDVVT+ SLI
Sbjct: 192 DSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGIS 251
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
PD IT++ +ID K+G + +AK+ + +M ++V PN+VTY S+I G C +EAK++
Sbjct: 252 PDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKV 311
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
++ +G PN VT+N +++ CK ++D+ +L +M + GV D FTYNTL G+C
Sbjct: 312 LNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQ 371
Query: 238 TGRVNHAKELFVSMESMG 255
G+ + A+++ M S G
Sbjct: 372 AGKFSAAEKVLGRMVSCG 389
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N AL + +M +M P V+ +N ++ L + + + + G+ PD+ T S
Sbjct: 201 NTALDVLKHMKKMGIRPDVVT-YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK- 117
LI+ + K G++ +++ P++VT+ SLI V K
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
P+A+TYNT+I+G CK VD ++ M V + TY ++ +G+C A ++ A+
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
++ M+ GV P++ TFN+++D LC +GK+ +A L+ + + TYN ++ G
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGL 439
Query: 236 CLTGRVNHAKELFVSMESMG 255
C +V A LF S+ G
Sbjct: 440 CKADKVEDAWYLFCSLALKG 459
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++N ++ K K D + + ++ G+ D +T++ L +C+ G+ S V
Sbjct: 322 PNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKV 381
Query: 94 LGRILRSCFTPDVVTFTSLI-------KVCKP--------------DAITYNTIIDGLCK 132
LGR++ PD+ TF L+ K+ K ITYN II GLCK
Sbjct: 382 LGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCK 441
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQP 188
V+ A LF + K V P+V+TY +++ G W EA L+ +M + G+ P
Sbjct: 442 ADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%)
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y +R ++ +N+A LF +M + P++V F+ ++ + K K + SL +
Sbjct: 47 YRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLE 106
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
G+ D +++ TL+D FC R++ A M +G
Sbjct: 107 MLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLG 144
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 100/354 (28%)
Query: 2 RLKSSGEGDITTITPN--------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD 53
R SSG GD I N +A+ +F M++ P P V FN +L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFD 102
Query: 54 TVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR-------------- 99
V+SL +++ + LYT++ILINCFC+ ++S +LG++++
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 100 ---------------------SCFTPDVVTFTSLI---------------------KVCK 117
+ PD +TFT+LI + C+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 118 PDAITY-----------------------------------NTIIDGLCKQGFVDKAKEL 142
P+ +TY NTIID LCK VD A L
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 143 FLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 202
F +M+ K ++PNVVTY+S+I C W++A +L +M+++ + PN+VTFN ++D K
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 203 NGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
GK EA L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 56/273 (20%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
FN ++ L K +H D L+LFK + + G+ P++ T+S LI+C C GR S
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 91 -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
FV G+ +++ PD+ T+ SL+
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
K C PD +TYNT+I G CK V+ ELF +M + + + VTYT++I
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
+G + D + A+++F +M+ GV P+++T+++++D LC NGK+++A + D M + ++
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
D + Y T+++G C G+V+ +LF S+ G
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 22/257 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + ++N ++ + D +F+ + S FPD+ T++ L
Sbjct: 348 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
I FCK RV G + + D VT+T+LI KV K
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD +TY+ ++DGLC G ++KA E+F M+ +K ++ YT++I G C A ++
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 526
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+PNVVT+N ++ LC + EA +LL M + G P++ TYNTL+
Sbjct: 527 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586
Query: 237 LTGRVNHAKELFVSMES 253
G + EL M S
Sbjct: 587 RDGDKAASAELIREMRS 603
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 165/356 (46%), Gaps = 101/356 (28%)
Query: 1 ERLKSSGEGDITTITPN---------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
ER +S GD I N +A+ +F M++ P P V FN +L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98
Query: 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR------------ 99
++ V+SL +++ + G+ DLYT+SI INCFC+ ++S VL ++++
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 100 -----------------------SCFTPDVVTFTSLI---------------------KV 115
+ PD TFT+LI +
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 116 CKPDAITYNTIIDGLCKQGFVD-----------------------------------KAK 140
C+PD +TY T+++GLCK+G +D A
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278
Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
+LF +M+ K ++PNVVTY S+I C W++A RL M+++ + PNVVTFN ++D
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
K GK+ EA L + MIQ + PD TYN L++GFC+ R++ AK++F M S C
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 14/215 (6%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
FN ++ L K +H + + LF + + G+ P++ T++ LINC C GR S +L +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 99 RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
P+VVTF N +ID K+G + +A++L +M +++ P+ +TY
Sbjct: 321 EKKINPNVVTF--------------NALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
+I GFC N +EAK++F M+ + PN+ T+N +++ CK ++++ L M Q
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426
Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
G+ + TY T++ GF G + A+ +F M S
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 29/243 (11%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA +F +M+ P + ++N ++ K K + + LF+ ++ GL + T++
Sbjct: 380 DEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
+I F + G +V +++ + D++T++ L+ +C
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
+ + YNT+I+G+CK G V +A +LF + ++KP+VVTY ++I G C EA
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTL 231
LF +M + G PN T+N ++ ++ ++ L+ M G DA T N L
Sbjct: 556 DLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615
Query: 232 LDG 234
DG
Sbjct: 616 HDG 618
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 18/177 (10%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
P + +++I+L L DT L +FK L + + +++ ++ +I CK G+V +
Sbjct: 465 PTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWD 524
Query: 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
+ F SL KPD +TYNT+I GLC + + +A +LF KMK+
Sbjct: 525 L---------------FCSL--SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTL 567
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
PN TY ++IR D + L EM G + T +++ + L +G++D++
Sbjct: 568 PNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDKS 623
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 167 bits (422), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 92/331 (27%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ +F M++ P P V F+ +L +AK K +D V+S +++ G+ +LYT++I
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 77 LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
+INC C+ ++S +LG++++
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG------ 134
+ PD VTFT+L+ K C+PD +TY +I+GLCK+G
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 135 -----------------------------FVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
VD A LF +M +K ++P+V TY+S+I
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
C W++A RL +M+++ + PNVVTFN ++D K GK+ EA L D MIQ + P+
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
TYN+L++GFC+ R++ A+++F M S C
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 56/273 (20%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
++ ++ L K +H D L+LF +++ G+ PD++T+S LI+C C GR S +L +L
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 99 -----------------------------------RSCFTPDVVTFTSLI---------- 113
+ P++VT+ SLI
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362
Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
K C PD +TYNT+I+G CK V ELF M + + N VTYT++I
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
GF A+D + A+ +F +M+ GV PN++T+N ++D LCKNGK+++A + + + + +
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
PD +TYN + +G C G+V +LF S+ G
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 22/257 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA +FD M++ P + ++N ++ + D +F + S PD+ T++ L
Sbjct: 328 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
IN FCK +V G + + R + VT+T+LI
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TYNT++DGLCK G ++KA +F ++ ++P++ TY + G C A +
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+P+V+ +N ++ CK G +EA +L M + G PD+ TYNTL+
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 237 LTGRVNHAKELFVSMES 253
G + EL M S
Sbjct: 567 RDGDKAASAELIKEMRS 583
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 53 DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
D +FK++ S G+ P++ T++ L++ CK G++ VV + +S PD+ T
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT---- 487
Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
YN + +G+CK G V+ +LF + K VKP+V+ Y ++I GFC
Sbjct: 488 ----------YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
EA LFI+M + G P+ T+N ++ ++G ++ L+ M DA TY +
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597
Query: 233 D 233
D
Sbjct: 598 D 598
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + ++N +L L KN + + +F+ L + + PD+YT++I+ CK G+V G+ +
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507
Query: 94 LGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
F SL +K KPD I YNT+I G CK+G ++A LF+KMK+
Sbjct: 508 ---------------FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPL 552
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
P+ TY ++IR D + L EM + T+ ++ D L +G++D+
Sbjct: 553 PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLDKG 608
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 167 bits (422), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 149/261 (57%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+++L +F +M++ P P ++ F+ +L ++K K YD V+ L++++ G+ +L T +I
Sbjct: 63 DDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC------------------- 116
L+NCFC+ ++S LG++++ P +VTF SL+ C
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 117 -KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KP+ + YNTIIDGLCK VD A +L +M+ + P+VVTY S+I G C + W++A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
R+ M + + P+V TFN ++D K G++ EA + MI+ + PD TY+ L+ G
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C+ R++ A+E+F M S GC
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGC 322
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 140/294 (47%), Gaps = 57/294 (19%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+AL +FD M+ M P V +N ++ L K+K D L L R+ G+ PD+ T++ L
Sbjct: 169 DALYMFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227
Query: 78 INCFC-----------------------------------KMGRVSHGFVVLGRILRSCF 102
I+ C K GRVS ++R
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287
Query: 103 TPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKE 141
PD+VT++ LI K C PD +TY+ +I+G CK V+ +
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347
Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
LF +M + V N VTYT +I+G+C A N A+ +F M+ GV PN++T+NV++ LC
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLC 407
Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
NGK+++A +L M ++G+ D TYN ++ G C G V A +++ S+ G
Sbjct: 408 DNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 22/229 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA ++ M+R P + ++++++ L D +F + S G FPD+ T+SI
Sbjct: 273 SEAEEFYEEMIR-RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
LIN +CK +V HG + + + + VT+T LI+ C+
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
P+ ITYN ++ GLC G ++KA + M+ + ++VTY +IRG C A + +A
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPD 224
++ + QG+ P++ T+ +M L K G EA +L M + G+ P+
Sbjct: 452 DIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%)
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D + +LF M P++ ++ ++ ++ L+ +M G+ N+ T N+
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+++ C+ ++ A S L MI+ G P T+ +LL+GFC RV A +F M MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 92/331 (27%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ +F M++ P P V FN +L +AK +D V+SL +R+ + + DLY+++I
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 77 LINCFCKMGRVSHGFVVLGRILR----------------SC------------------- 101
LINCFC+ ++ VLG++++ C
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD--- 137
+ P+ VTF +LI + C+PD TY T+++GLCK+G +D
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 138 --------------------------------KAKELFLKMKDKNVKPNVVTYTSVIRGF 165
A LF +M +K ++PNVVTY S+IR
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
C W++A RL +M+++ + PNVVTF+ ++D K GK+ EA L D MI+ + PD
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
FTY++L++GFC+ R++ AK +F M S C
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 137/260 (52%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N+AL +F M P V ++N ++ CL + L + + P++ T S
Sbjct: 272 NDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI+ F K G++ + +++ PD+ T++SLI K
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C P+ +TYNT+I G CK V++ ELF +M + + N VTY ++I+G A D + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
++F +M+ GV P+++T+++++D LCK GK+++A + + + + + PD +TYN +++G
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Query: 236 CLTGRVNHAKELFVSMESMG 255
C G+V +LF S+ G
Sbjct: 511 CKAGKVEDGWDLFCSLSLKG 530
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 27/246 (10%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC---KMGRVSHG 90
P V +F+ ++ K L+ + + PD++T+S LIN FC ++ H
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 91 FVVLGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDG 129
F ++ I + CF P+VVT+ +LIK CK + +TYNT+I G
Sbjct: 383 FELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
L + G D A+++F KM V P+++TY+ ++ G C +A +F + ++P+
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
+ T+N++++ +CK GK+++ L + GV+P+ Y T++ GFC G A LF
Sbjct: 500 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFR 559
Query: 250 SMESMG 255
M+ G
Sbjct: 560 EMKEDG 565
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 22/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + +++ ++ + D +F+ + S FP++ T++ L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
I FCK RV G + + + + VT+ +LI K+ K
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD ITY+ ++DGLCK G ++KA +F ++ ++P++ TY +I G C A +
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+PNV+ + ++ C+ G +EA +L M + G P++ TYNTL+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Query: 237 LTGRVNHAKELFVSMESMG 255
G + EL M S G
Sbjct: 582 RDGDKAASAELIKEMRSCG 600
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++N ++ L + D +FK++ S G+ PD+ T+SIL++ CK G++ VV +
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491
Query: 98 LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
+S PD+ T YN +I+G+CK G V+ +LF + K VKPNV+
Sbjct: 492 QKSKMEPDIYT--------------YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
YT++I GFC EA LF EM + G PN T+N ++ ++G ++ L+ M
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMR 597
Query: 218 QHGVRPDAFT----YNTLLDG 234
G DA T N L DG
Sbjct: 598 SCGFVGDASTISMVINMLHDG 618
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%)
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D A +LF +M P++V + ++ N ++ L M + + ++ ++N+
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+++ C+ ++ A ++L M++ G PD T ++LL+G+C R++ A L M
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 155/322 (48%), Gaps = 92/322 (28%)
Query: 26 MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
M++ P P + FN +L +AK K +D V+SL +++ G+ +LYT++ILINCFC+
Sbjct: 1 MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59
Query: 86 RVSHGFVVLGRILR-----------------------------------SCFTPDVVTFT 110
++S +LG++++ + PD +TFT
Sbjct: 60 QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119
Query: 111 SLI---------------------KVCKPDAITY-------------------------- 123
+LI + C+P+ +TY
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
Query: 124 ---------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
NTIID LCK VD A LF +M+ K ++PNVVTY+S+I C W++A
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
+L +M+++ + PN+VTFN ++D K GK EA L D MI+ + PD FTYN+L++G
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299
Query: 235 FCLTGRVNHAKELFVSMESMGC 256
FC+ R++ AK++F M S C
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDC 321
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 56/273 (20%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
FN ++ L K +H D L+LFK + + G+ P++ T+S LI+C C GR S
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 91 -----------------FVVLGR----------ILRSCFTPDVVTFTSLI---------- 113
FV G+ +++ PD+ T+ SLI
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
K C PD TYNT+I G CK V+ ELF +M + + + VTYT++I
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
+G + D + A+++F +M+ GV P+++T+++++D LC NGK+++A + D M + ++
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
D + Y T+++G C G+V+ +LF S+ G
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 22/257 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA + D M++ P + ++N ++ + D +F+ + S FPDL T++ L
Sbjct: 273 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVCK------- 117
I FCK RV G + + D VT+T+LI KV K
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD +TY+ ++DGLC G ++KA E+F M+ +K ++ YT++I G C A ++
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+PNVVT+N ++ LC + EA +LL M + G PD+ TYNTL+
Sbjct: 452 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 511
Query: 237 LTGRVNHAKELFVSMES 253
G + EL M S
Sbjct: 512 RDGDKAASAELIREMRS 528
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
PP + +++I+L L N + L +F + + + D+Y ++ +I CK G+V G+
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451
Query: 93 VLGRILRSCFTPDVVTFTSL-IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
+ F SL +K KP+ +TYNT+I GLC + + +A L KMK+
Sbjct: 452 L---------------FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496
Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
P+ TY ++IR D + L EM + T ++ + L +G++D+ S
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDK--S 553
Query: 212 LLDLM 216
LD++
Sbjct: 554 FLDML 558
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 166/356 (46%), Gaps = 101/356 (28%)
Query: 1 ERLKSSGEGDITTITPN---------EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH 51
ER +S GD I N +A+ +F M++ P P V FN +L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVE-FNKLLSAVAKMNK 98
Query: 52 YDTVLSLFKRLNSTGLFPDLYTHSILINCFC----------------KMG---------- 85
++ V+SL +++ + G+ DLYT+SI INCFC K+G
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 86 ---------RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
R+S ++ +++ + PD TFT+LI +
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 116 CKPDAITY-----------------------------------NTIIDGLCKQGFVDKAK 140
C+PD +TY NTIIDGLCK +D A
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278
Query: 141 ELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 200
LF +M +K ++P+V TY+S+I C W++A RL +M+++ + PNVVTF+ ++D
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338
Query: 201 CKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
K GK+ EA L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394
Score = 153 bits (387), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 56/273 (20%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
+N ++ L K KH D L+LF +++ G+ PD++T+S LI+C C GR S
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 91 -----------------FVVLGRI----------LRSCFTPDVVTFTSLI---------- 113
FV G++ ++ PD+ T++SLI
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380
Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
K C P+ +TY+T+I G CK V++ ELF +M + + N VTYT++I
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
GF A D + A+ +F +M+ GV PN++T+N+++D LCKNGK+ +A + + + + +
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
PD +TYN +++G C G+V ELF ++ G
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 22/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + +++ ++ + D +F+ + S FP++ T+S L
Sbjct: 346 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVC--------------- 116
I FCK RV G + + + + VT+T+LI + C
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TYN ++DGLCK G + KA +F ++ ++P++ TY +I G C A +
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV PNV+ +N ++ C+ G +EA SLL M + G P++ TYNTL+
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584
Query: 237 LTGRVNHAKELFVSMESMG 255
G + EL M S G
Sbjct: 585 RDGDREASAELIKEMRSCG 603
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 18/186 (9%)
Query: 53 DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
D +FK++ S G+ P++ T++IL++ CK G+++ VV + RS PD+ T
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT---- 505
Query: 113 IKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
YN +I+G+CK G V+ ELF + K V PNV+ Y ++I GFC
Sbjct: 506 ----------YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY---- 228
EA L +M + G PN T+N ++ ++G + ++ L+ M G DA T
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVT 615
Query: 229 NTLLDG 234
N L DG
Sbjct: 616 NMLHDG 621
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 159/331 (48%), Gaps = 92/331 (27%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ +F M++ P P V F+ +L +AK +D V+SL +++ + G+ +LYT+SI
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 77 LINCFCKMGRVSHGFVVL-----------------------------------GRILRSC 101
LINCFC+ ++S VL G+++
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD--- 137
+ PD TF +LI K C+PD +TY +++GLCK+G +D
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 138 --------------------------------KAKELFLKMKDKNVKPNVVTYTSVIRGF 165
A LF +M +K ++PNVVTY S+IR
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
C W++A RL +M+++ + PNVVTF+ ++D K GK+ EA L D MI+ + PD
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
FTY++L++GFC+ R++ AK +F M S C
Sbjct: 362 FTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N+AL +F M P V ++N ++ CL + L + + P++ T S
Sbjct: 273 NDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI+ F K G++ + +++ PD+ T++SLI K
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C P+ +TYNT+I G CK VD+ ELF +M + + N VTYT++I GF A + + A+
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
+F +M+ GV P+++T+++++D LC NGK++ A + + + + + PD +TYN +++G
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGM 511
Query: 236 CLTGRVNHAKELFVSMESMG 255
C G+V +LF S+ G
Sbjct: 512 CKAGKVEDGWDLFCSLSLKG 531
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 22/257 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + +++ ++ + D +F+ + S FP++ T++ L
Sbjct: 344 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------KVCK-------------- 117
I FCK RV G + + + + VT+T+LI + C
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD +TY+ ++DGLC G V+ A +F ++ ++P++ TY +I G C A +
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+PNVVT+ +M C+ G +EA +L M + G PD+ TYNTL+
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582
Query: 237 LTGRVNHAKELFVSMES 253
G + EL M S
Sbjct: 583 RDGDKAASAELIREMRS 599
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%)
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D A LF M P++V ++ ++ N ++ L +M + G+ N+ T+++
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+++ C+ ++ A ++L M++ G PD T N+LL+GFC R++ A L M MG
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 148/264 (56%), Gaps = 25/264 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGL--FPDLYT 73
++A +F M +P P V FN +L +AK + YD V++L+KR+ N+ G+ PDLYT
Sbjct: 67 DDAFHLFVLMAYSYPLPSIVE-FNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYT 125
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC---------------- 116
+IL+NCFC+ + S LG++++ PD+VT +SL+ C
Sbjct: 126 CNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQME 185
Query: 117 ----KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWN 172
K D + +ID LCK V A E+ +MKD+ + PNVVTY+S+I G C +
Sbjct: 186 KMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLA 245
Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
+A+R EM + + PNV+TF+ ++D K GK+ + S+ +MIQ + P+ FTY++L+
Sbjct: 246 DAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLI 305
Query: 233 DGFCLTGRVNHAKELFVSMESMGC 256
G C+ RV+ A ++ M S GC
Sbjct: 306 YGLCMHNRVDEAIKMLDLMISKGC 329
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 22/261 (8%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
P+ AL M+++ P V++ +++ G N D V + ++ G+ D+ +
Sbjct: 139 PSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVY-VAGQMEKMGIKRDVVVDT 197
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK----------------- 117
ILI+ CK V VL R+ +P+VVT++SLI +CK
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257
Query: 118 ---PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
P+ IT++ +ID K+G + K ++ M ++ PNV TY+S+I G C N +EA
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
++ M+ +G PNVVT++ + + K+ ++D+ LLD M Q GV + + NTL+ G
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377
Query: 235 FCLTGRVNHAKELFVSMESMG 255
+ G+++ A +F M S G
Sbjct: 378 YFQAGKIDLALGVFGYMTSNG 398
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
I++ L KN+ L + KR+ G+ P++ T+S LI CK GR++ L +
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257
Query: 101 CFTPDVVTFTSLI-------KVCK--------------PDAITYNTIIDGLCKQGFVDKA 139
P+V+TF++LI K+ K P+ TY+++I GLC VD+A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317
Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
++ M K PNVVTY+++ GF ++ ++ +L +M +GV N V+ N ++
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377
Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+ GK+D A + M +G+ P+ +YN +L G G V A F M+
Sbjct: 378 YFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQ 430
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 21/240 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +++ ++ L K+ ++S + P++ T S LI+ + K G++S V
Sbjct: 226 PNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSV 285
Query: 94 LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
+++ P+V T++SLI K C P+ +TY+T+ +G K
Sbjct: 286 YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 345
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
VD +L M + V N V+ ++I+G+ A + A +F M G+ PN+ +
Sbjct: 346 SSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRS 405
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+N+++ L NG++++A S + M + D TY ++ G C V A +LF ++
Sbjct: 406 YNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 465
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
++ M++M P + +++ G N+ D + + + S G P++ T+S L N F
Sbjct: 285 VYKMMIQMSIDPNVFTYSSLIYGLCMHNR-VDEAIKMLDLMISKGCTPNVVTYSTLANGF 343
Query: 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDA 120
K RV G +L + + + V+ +LIK P+
Sbjct: 344 FKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNI 403
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
+YN ++ GL G V+KA F M+ +++TYT +I G C A EA LF +
Sbjct: 404 RSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYK 463
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
+ + V+P+ + +++ EL + G EA +L +H
Sbjct: 464 LKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRFYQKH 502
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 38/138 (27%)
Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD-------- 207
+ Y V+R + +++A LF+ M P++V FN ++ + K D
Sbjct: 51 IDYREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKR 110
Query: 208 ------------------------------EASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
A S L M++ G+ PD T ++L++GFCL
Sbjct: 111 IENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 170
Query: 238 TGRVNHAKELFVSMESMG 255
+ + A + ME MG
Sbjct: 171 SNSIKDAVYVAGQMEKMG 188
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P FN +L L L L R+ G P L T + L+N C G+VS V+
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215
Query: 94 LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
+ R++ + F P+ VT+ ++ V CK DA+ Y+ IIDGLCK
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +D A LF +M+ K K +++TY ++I GFC A W++ +L +M+ + + PNVVT
Sbjct: 276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
F+V++D K GK+ EA LL M+Q G+ P+ TYN+L+DGFC R+ A ++ M
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395
Query: 253 SMGC 256
S GC
Sbjct: 396 SKGC 399
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 18/251 (7%)
Query: 5 SSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNS 64
SSG + I ++A+ +F M++ P P V FN + +AK K Y+ VL+L K++ S
Sbjct: 61 SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 65 TGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYN 124
G+ +YT SI+INCFC+ ++S+ F +G+I++ + PD V F N
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIF--------------N 162
Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
T+++GLC + V +A EL +M + KP ++T +++ G C ++A L M++
Sbjct: 163 TLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVET 222
Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
G QPN VT+ +++ +CK+G+ A LL M + ++ DA Y+ ++DG C G +++A
Sbjct: 223 GFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282
Query: 245 KELFVSMESMG 255
LF ME G
Sbjct: 283 FNLFNEMEIKG 293
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EAL + D M+ M P ++ N ++ L N + L R+ TG P+ T+
Sbjct: 175 SEALELVDRMVEMGHKPTLIT-LNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
++N CK G+ + +L ++ D V ++ +I K
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
K D ITYNT+I G C G D +L M + + PNVVT++ +I F EA
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
+L EMM +G+ PN +T+N ++D CK +++EA ++DLMI G PD T+N L++G+
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
Query: 236 CLTGRVNHAKELFVSMESMG 255
C R++ ELF M G
Sbjct: 414 CKANRIDDGLELFREMSLRG 433
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 21/235 (8%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
++I++ L K+ D +LF + G D+ T++ LI FC GR G +L ++
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 99 RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
+ +P+VVTF+ LI + P+ ITYN++IDG CK+ ++
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
+A ++ M K P+++T+ +I G+C AN ++ LF EM +GV N VT+N ++
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
C++GK++ A L M+ VRPD +Y LLDG C G + A E+F +E
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 21/241 (8%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
+ ++N ++G +D L + + + P++ T S+LI+ F K G++ +L
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 96 RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
+++ P+ +T+ SLI K C PD +T+N +I+G CK
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
+D ELF +M + V N VTY ++++GFC + AK+LF EM+ + V+P++V++
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
+++D LC NG++++A + + + + D Y ++ G C +V+ A +LF S+
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 255 G 255
G
Sbjct: 538 G 538
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 15/238 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA+ + D M+ P + +FNI++ K D L LF+ ++ G+ + T++ L
Sbjct: 386 EAIQMVDLMIS-KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
+ FC+ G++ V ++ + + V +PD ++Y ++DGLC G ++
Sbjct: 445 VQGFCQSGKLE----VAKKLFQEMVSRRV----------RPDIVSYKILLDGLCDNGELE 490
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
KA E+F K++ ++ ++ Y +I G C A+ ++A LF + +GV+ + +N+++
Sbjct: 491 KALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
ELC+ + +A L M + G PD TYN L+ A EL M+S G
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 24/200 (12%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++N ++ ++ + LF+ + S + PD+ ++ IL++ C G + + G+I
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
Query: 98 LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
+S D+ + +I K K DA YN +I LC++ +
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
KA LF KM ++ P+ +TY +IR +D A L EM G +V T ++
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619
Query: 197 MDELCKNGKMDEASSLLDLM 216
++ L +G++D+ S LD++
Sbjct: 620 INML-SSGELDK--SFLDML 636
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 155/277 (55%), Gaps = 26/277 (9%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL++ ++ I ++A +F ML+ P P V F +L +AK +D V+ L+
Sbjct: 49 ERLRN----ELHCIKFDDAFSLFCEMLQSRPIPSIVD-FTRVLTVIAKMNKFDIVIYLYH 103
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-- 117
++ + G+ DLY+ +ILI+CFC+ R+S +LG++++ F P +VT SL+ C+
Sbjct: 104 KMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGN 163
Query: 118 ------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYT 159
P+ + YNT+I+GLCK ++ A E+F M+ K ++ + VTY
Sbjct: 164 RFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYN 223
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
++I G + W +A RL +M+ + + PNV+ F ++D K G + EA +L MI+
Sbjct: 224 TLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 283
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
V P+ FTYN+L++GFC+ G + AK +F M S GC
Sbjct: 284 SVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGC 320
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N AL +F Y + ++N ++ L+ + + L + + + P++ +
Sbjct: 201 NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI+ F K G + + ++R P+V T+ SLI K
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C PD +TYNT+I G CK V+ +LF +M + + + TY ++I G+C A N A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
++F M+D GV P++VT+N+++D LC NGK+++A +++ + + + D TYN ++ G
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439
Query: 236 CLTGRVNHAKELFVSMESMG 255
C T ++ A LF S+ G
Sbjct: 440 CRTDKLKEAWCLFRSLTRKG 459
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 27/244 (11%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIML------GCLAKNKHYDTVLSLFKRLNSTGLFPDL 71
EA ++ M+R P V ++N ++ GCL K+ +F + S G FPD+
Sbjct: 272 EARNLYKEMIR-RSVVPNVFTYNSLINGFCIHGCLGDAKY------MFDLMVSKGCFPDV 324
Query: 72 YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLC 131
T++ LI FCK RV G + + T+ L+ DA TYNT+I G C
Sbjct: 325 VTYNTLITGFCKSKRVEDGMKLFCEM----------TYQGLV----GDAFTYNTLIHGYC 370
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
+ G ++ A+++F +M D V P++VTY ++ C +A + ++ + +++
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
T+N+I+ LC+ K+ EA L + + GV+PDA Y T++ G C G A +L M
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490
Query: 252 ESMG 255
+ G
Sbjct: 491 KEDG 494
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 21/147 (14%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++N ++ + + +F R+ G+ PD+ T++IL++C C G++ V++ +
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420
Query: 98 LRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
+S D++T+ +I K KPDAI Y T+I GLC++G
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 480
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIR 163
+A +L +MK+ P+ Y +R
Sbjct: 481 READKLCRRMKEDGFMPSERIYDETLR 507
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y +R + +++A LF EM+ P++V F ++ + K K D L M
Sbjct: 47 YRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKME 106
Query: 218 QHGVRPDAFTYNTLLDGFC 236
G+ D +++ L+ FC
Sbjct: 107 NLGISHDLYSFTILIHCFC 125
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V ++N ++ K D + R+ S PD T++I+I C G++ V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 94 LGRILRSCFTPDVVTFTSLIKVC---------------------KPDAITYNTIIDGLCK 132
L ++L P V+T+T LI+ KPD TYNTII G+CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+G VD+A E+ ++ K +P+V++Y ++R W E ++L +M + PNVVT
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+++++ LC++GK++EA +LL LM + G+ PDA++Y+ L+ FC GR++ A E +M
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395
Query: 253 SMGC 256
S GC
Sbjct: 396 SDGC 399
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 22/261 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A + D M SP V+ +NIM+G L D L + +L S P + T++I
Sbjct: 175 DDATRVLDRMRSKDFSPDTVT-YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI G V ++ +L PD+ T+ ++I K
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C+PD I+YN ++ L QG ++ ++L KM + PNVVTY+ +I C EA
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L M ++G+ P+ +++ ++ C+ G++D A L+ MI G PD YNT+L
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C G+ + A E+F + +GC
Sbjct: 414 CKNGKADQALEIFGKLGEVGC 434
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 21/251 (8%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
L + P V S+NI+L L ++ L ++ S P++ T+SILI C+ G+
Sbjct: 289 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNT 125
+ +L + TPD ++ LI C PD + YNT
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
++ LCK G D+A E+F K+ + PN +Y ++ + D A + +EMM G
Sbjct: 409 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
+ P+ +T+N ++ LC+ G +DEA LL M P TYN +L GFC R+ A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528
Query: 246 ELFVSMESMGC 256
+ SM GC
Sbjct: 529 NVLESMVGNGC 539
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +++I++ L ++ + ++L K + GL PD Y++ LI FC+ GR+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 94 LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
L ++ PD+V + +++ C P++ +YNT+ L
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +A + L+M + P+ +TY S+I C +EA L ++M P+VVT
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
+N+++ CK ++++A ++L+ M+ +G RP+ TY L++G G A EL
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--------------------VCKPDAI 121
C+ G +L ++R + PDV+ T LIK +PD
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
YN +I+G CK +D A + +M+ K+ P+ VTY +I C + A ++ ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
+ QP V+T+ ++++ G +DEA L+D M+ G++PD FTYNT++ G C G V
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Query: 242 NHAKELFVSMESMGC 256
+ A E+ ++E GC
Sbjct: 280 DRAFEMVRNLELKGC 294
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 28/239 (11%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P S++ ++ + D + + + S G PD+ ++ ++ CK G+ +
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425
Query: 94 LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
G++ +P+ ++ ++ PD ITYN++I LC+
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+G VD+A EL + M+ P+VVTY V+ GFC A+ +A + M+ G +PN T
Sbjct: 486 EGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETT 545
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELF 248
+ V+++ + G EA L + + VR DA +++ L F L + + + F
Sbjct: 546 YTVLIEGIGFAGYRAEAMELANDL----VRIDAISEYSFKRLHRTFPLLNVLQRSSQTF 600
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 136/245 (55%), Gaps = 26/245 (10%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V ++N+M+ K + LS+ R++ + PD+ T++ ++ C G++ V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 94 LGRIL-RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLC 131
L R+L R C+ PDV+T+T LI+ C PD +TYN +++G+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
K+G +D+A + M +PNV+T+ ++R C W +A++L +M+ +G P+VV
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
TFN++++ LC+ G + A +L+ M QHG +P++ +YN LL GFC +++ A E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 252 ESMGC 256
S GC
Sbjct: 406 VSRGC 410
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 14/219 (6%)
Query: 30 HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
H P S+N +L K K D + +R+ S G +PD+ T++ ++ CK G+V
Sbjct: 373 HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVED 432
Query: 90 GFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
+L ++ K C P ITYNT+IDGL K G KA +L +M+ K
Sbjct: 433 AVEILNQLSS--------------KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
++KP+ +TY+S++ G +EA + F E G++PN VTFN IM LCK+ + D A
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRA 538
Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
L MI G +P+ +Y L++G G A EL
Sbjct: 539 IDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 15/235 (6%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
A+ + D M R P V ++N+++ + K D + + S+G P++ TH+I++
Sbjct: 258 AMKLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
C GR +L +LR F+P VVTF N +I+ LC++G + +
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTF--------------NILINFLCRKGLLGR 362
Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
A ++ KM +PN ++Y ++ GFC + A M+ +G P++VT+N ++
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422
Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
LCK+GK+++A +L+ + G P TYNT++DG G+ A +L M +
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 18/208 (8%)
Query: 66 GLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------- 117
G PD+ + LI FC++G+ +L + S PDV+T+ +I CK
Sbjct: 132 GNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA 191
Query: 118 ----------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
PD +TYNTI+ LC G + +A E+ +M ++ P+V+TYT +I C
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251
Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
+ A +L EM D+G P+VVT+NV+++ +CK G++DEA L+ M G +P+ T
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT 311
Query: 228 YNTLLDGFCLTGRVNHAKELFVSMESMG 255
+N +L C TGR A++L M G
Sbjct: 312 HNIILRSMCSTGRWMDAEKLLADMLRKG 339
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 17/232 (7%)
Query: 26 MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
MLR SP V +FNI++ L + + + +++ G P+ +++ L++ FCK
Sbjct: 335 MLRKGFSPS-VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393
Query: 86 RVSHGFVVLGRIL-RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL 144
++ L R++ R C+ PD +TYNT++ LCK G V+ A E+
Sbjct: 394 KMDRAIEYLERMVSRGCY---------------PDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 145 KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
++ K P ++TY +VI G A +A +L EM + ++P+ +T++ ++ L + G
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498
Query: 205 KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
K+DEA + G+RP+A T+N+++ G C + + + A + V M + GC
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 49 NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVT 108
N HY +V NS+ D+ +++ L + G + GF L ++ PD++
Sbjct: 88 NGHYSSV-------NSSFALEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIP 139
Query: 109 FTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDKAKELFLKMK 147
T+LI+ C+ PD ITYN +I G CK G ++ A + +M
Sbjct: 140 CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM- 198
Query: 148 DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 207
+V P+VVTY +++R C + +A + M+ + P+V+T+ ++++ C++ +
Sbjct: 199 --SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVG 256
Query: 208 EASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
A LLD M G PD TYN L++G C GR++ A + M S GC
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P +F+ ++ L L L R+ G P L T + L+N C G+VS ++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199
Query: 94 LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
+ R++ + F P+ VT+ ++KV CK DA+ Y+ IIDGLCK
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +D A LF +M+ K K +++ YT++IRGFCYA W++ +L +M+ + + P+VV
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
F+ ++D K GK+ EA L MIQ G+ PD TY +L+DGFC +++ A + M
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379
Query: 253 SMGC 256
S GC
Sbjct: 380 SKGC 383
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 139/255 (54%), Gaps = 19/255 (7%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S I I ++A+ +F M R P P + F+ + +A+ K YD VL L K
Sbjct: 42 ERLRSG----IVDIKEDDAVDLFQEMTRSRPRPRLID-FSRLFSVVARTKQYDLVLDLCK 96
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
++ G+ +LYT SI+INC C+ ++S F +G+I++ + PD VTF+
Sbjct: 97 QMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFS---------- 146
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
T+I+GLC +G V +A EL +M + KP ++T +++ G C ++A L
Sbjct: 147 ----TLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDR 202
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
M++ G QPN VT+ ++ +CK+G+ A LL M + ++ DA Y+ ++DG C G
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262
Query: 241 VNHAKELFVSMESMG 255
+++A LF ME G
Sbjct: 263 LDNAFNLFNEMEIKG 277
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 21/235 (8%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
++I++ L K+ D +LF + G D+ ++ LI FC GR G +L ++
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 99 RSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFVD 137
+ TPDVV F++LI + PD +TY ++IDG CK+ +D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
KA + M K PN+ T+ +I G+C AN ++ LF +M +GV + VT+N ++
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
C+ GK++ A L M+ VRPD +Y LLDG C G A E+F +E
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%)
Query: 51 HYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFT 110
+D L + + + PD+ S LI+CF K G++ + +++ +PD VT+T
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356
Query: 111 SLI---------------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK 149
SLI K C P+ T+N +I+G CK +D ELF KM +
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416
Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
V + VTY ++I+GFC AK LF EM+ + V+P++V++ +++D LC NG+ ++A
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+ + + + + D YN ++ G C +V+ A +LF S+ G
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +F+ ++ C K L K + G+ PD T++ LI+ FCK ++ +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
L ++ P++ TF LI CK D +TYNT+I G C+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G ++ AKELF +M + V+P++V+Y ++ G C + +A +F ++ ++ ++
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+N+I+ +C K+D+A L + GV+PD TYN ++ G C G ++ A LF ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Query: 253 SMG 255
G
Sbjct: 555 EDG 557
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + +FNI++ K D L LF++++ G+ D T++ LI FC++G++
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE----- 439
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
+ + F V + +PD ++Y ++DGLC G +KA E+F K++ ++
Sbjct: 440 ---VAKELFQEMVS------RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
++ Y +I G C A+ ++A LF + +GV+P+V T+N+++ LCK G + EA L
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550
Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M + G P+ TYN L+ G + +L ++ G
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + S+ I+L L N + L +F+++ + + D+ ++I+I+ C +V + +
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 514
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
C P +K KPD TYN +I GLCK+G + +A LF KM++ P
Sbjct: 515 F------CSLP--------LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSP 560
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
N TY +IR D ++ +L E+ G + T +++D L +G++ + S L
Sbjct: 561 NGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML-SDGRLKK--SFL 617
Query: 214 DLM 216
D++
Sbjct: 618 DML 620
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 28/270 (10%)
Query: 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTG 66
EGD+ + AL I + M+ S VS N+++ K + L+ + + N G
Sbjct: 237 EGDL-----DGALRIREQMVEFGCSWSNVS-VNVIVHGFCKEGRVEDALNFIQEMSNQDG 290
Query: 67 LFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------- 113
FPD YT + L+N CK G V H ++ +L+ + PDV T+ S+I
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 114 --------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
+ C P+ +TYNT+I LCK+ V++A EL + K + P+V T+ S+I+G
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
C + A LF EM +G +P+ T+N+++D LC GK+DEA ++L M G
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
TYNTL+DGFC + A+E+F ME G
Sbjct: 471 ITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 137/260 (52%), Gaps = 24/260 (9%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
A+ I D ML+ P V ++N ++ L K + + ++ + P+ T++ LI
Sbjct: 314 AIEIMDVMLQ-EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 79 NCFCKMGRVSHGFVVLGRILRS-CFTPDVVTFTSLI---------------------KVC 116
+ CK +V L R+L S PDV TF SLI K C
Sbjct: 373 STLCKENQVEEA-TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
+PD TYN +ID LC +G +D+A + +M+ +V+TY ++I GFC AN EA+
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+F EM GV N VT+N ++D LCK+ ++++A+ L+D MI G +PD +TYN+LL FC
Sbjct: 492 IFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551
Query: 237 LTGRVNHAKELFVSMESMGC 256
G + A ++ +M S GC
Sbjct: 552 RGGDIKKAADIVQAMTSNGC 571
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 14/222 (6%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +FN ++ L +++ + LF+ + S G PD +T+++LI+ C G++ +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
L ++ S C ITYNT+IDG CK +A+E+F +M+ V
Sbjct: 458 LKQMELSG--------------CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
N VTY ++I G C + +A +L +M+ +G +P+ T+N ++ C+ G + +A+ ++
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M +G PD TY TL+ G C GRV A +L S++ G
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 34/251 (13%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF------------ 81
P VS+FN+++ L + + + + + S GL PD T + ++ +
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 82 --------CKMGRVS-----HGFVVLGRILRSCFTPDVVTFTSLIKVCK---PDAITYNT 125
C VS HGF GR+ D + F + PD T+NT
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRV------EDALNFIQEMSNQDGFFPDQYTFNT 300
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
+++GLCK G V A E+ M + P+V TY SVI G C + EA + +M+ +
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
PN VT+N ++ LCK +++EA+ L ++ G+ PD T+N+L+ G CLT A
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 246 ELFVSMESMGC 256
ELF M S GC
Sbjct: 421 ELFEEMRSKGC 431
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
A+ +F+ M R P ++N+++ L D L++ K++ +G + T++ LI
Sbjct: 419 AMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK-------------------- 117
+ FCK + + + + + VT+ +LI +CK
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
PD TYN+++ C+ G + KA ++ M +P++VTY ++I G C A A +L
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI-QHGVRPDAFTYNTLLDGFC 236
+ +G+ +N ++ L + K EA +L M+ Q+ PDA +Y + G C
Sbjct: 598 LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657
Query: 237 LTG 239
G
Sbjct: 658 NGG 660
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
KPD YN +++ L + + KM +KP+V T+ +I+ C A+ A
Sbjct: 151 KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+ +M G+ P+ TF +M + G +D A + + M++ G + N ++ GFC
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270
Query: 237 LTGRVNHA 244
GRV A
Sbjct: 271 KEGRVEDA 278
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEA 174
C+ T+ +I+ + D+ + M D+ +KP+ Y ++ N
Sbjct: 114 CEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLV 173
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
+ +M G++P+V TFNV++ LC+ ++ A +L+ M +G+ PD T+ T++ G
Sbjct: 174 EISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQG 233
Query: 235 FCLTGRVNHAKELFVSMESMGC 256
+ G ++ A + M GC
Sbjct: 234 YIEEGDLDGALRIREQMVEFGC 255
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 95/347 (27%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
E+L +G ++ + ++A+ +F M++ P P + F+ +L +AK +D V+SL +
Sbjct: 50 EKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLGE 105
Query: 61 RLNSTGLFPDLYTHSILINCFC----------------KMG------------------- 85
++ + G+ + YT+SILINCFC K+G
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITY- 123
R+S ++ ++ + + P+ VTF +LI K C+PD +TY
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 124 ----------------------------------NTIIDGLCKQGFVDKAKELFLKMKDK 149
NTIIDGLCK +D A LF +M+ K
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 150 NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 209
++PNVVTY+S+I C W++A RL +M+++ + P+V TF+ ++D K GK+ EA
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345
Query: 210 SSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
L D M++ + P TY++L++GFC+ R++ AK++F M S C
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 56/278 (20%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG--- 90
P V +N ++ L K KH D L+LFK + + G+ P++ T+S LI+C C GR S
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 91 ----------------------FVVLGRIL----------RSCFTPDVVTFTSLI----- 113
FV G+++ + P +VT++SLI
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 114 ----------------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
K C PD +TYNT+I G CK V++ E+F +M + + N VT
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y +I+G A D + A+ +F EM+ GV PN++T+N ++D LCKNGK+++A + + +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+ + P +TYN +++G C G+V +LF ++ G
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 22/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P + +++ ++ + D +F+ + S FPD+ T++ L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
I FCK RV G V + + + VT+ LI+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TYNT++DGLCK G ++KA +F ++ ++P + TY +I G C A +
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF + +GV+P+VV +N ++ C+ G +EA +L M + G P++ YNTL+
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582
Query: 237 LTGRVNHAKELFVSMESMG 255
G + EL M S G
Sbjct: 583 RDGDREASAELIKEMRSCG 601
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++NI++ L + D +FK + S G+ P++ T++ L++ CK G++ VV +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 98 LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
RS P + T YN +I+G+CK G V+ +LF + K VKP+VV
Sbjct: 493 QRSKMEPTIYT--------------YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y ++I GFC EA LF EM + G PN +N ++ ++G + ++ L+ M
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598
Query: 218 QHGVRPDAFTY----NTLLDG 234
G DA T N L DG
Sbjct: 599 SCGFAGDASTIGLVTNMLHDG 619
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 23/262 (8%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
P+ AL + + M + V +N ++ L K KH D LF ++ + G+ PD++T++
Sbjct: 231 PDLALNLLNKMEK-GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
LI+C C GR S +L +L PD+V F +LI
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349
Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
K C PD + YNT+I G CK V++ E+F +M + + N VTYT++I GF A D +
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
A+ +F +M+ GV P+++T+N+++D LC NG ++ A + + M + ++ D TY T+++
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469
Query: 234 GFCLTGRVNHAKELFVSMESMG 255
C G+V +LF S+ G
Sbjct: 470 ALCKAGKVEDGWDLFCSLSLKG 491
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 149/331 (45%), Gaps = 93/331 (28%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ +F M++ P P V F+ +L +AK +D V+SL +++ + G+ +LYT+SI
Sbjct: 57 DDAIGLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 77 LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 101
IN FC+ ++S +LG++++
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
Query: 102 FTPDVVTFTSLI---------------------KVCKPDAITY----------------- 123
+ PD VTFT+L+ K C+PD +TY
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 124 ------------------NTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
NTIIDGLCK +D A +LF KM+ K +KP+V TY +I
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHG-VRPD 224
C W++A RL +M+++ + P++V FN ++D K GK+ EA L D M++ PD
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355
Query: 225 AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
YNTL+ GFC RV E+F M G
Sbjct: 356 VVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 22/244 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
P + FN ++ K L+ + S FPD+ ++ LI FCK RV G
Sbjct: 318 PDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGME 377
Query: 93 VLGRILRSCFTPDVVTFTSLI------KVC---------------KPDAITYNTIIDGLC 131
V + + + VT+T+LI + C PD +TYN ++DGLC
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
G V+ A +F M+ +++K ++VTYT++I C A + LF + +GV+PNVV
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
T+ +M C+ G +EA +L M + G P++ TYNTL+ G + EL M
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557
Query: 252 ESMG 255
S G
Sbjct: 558 RSCG 561
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 25/242 (10%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA ++D M++ P V ++N ++ K K + + +F+ ++ GL + T++ L
Sbjct: 338 EAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTL 397
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
I+ F + + +V +++ PD++T+ L+ +
Sbjct: 398 IHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
K D +TY T+I+ LCK G V+ +LF + K VKPNVVTYT+++ GFC EA
Sbjct: 458 KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 517
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY----NTLL 232
LF+EM + G PN T+N ++ ++G ++ L+ M G DA T+ N L
Sbjct: 518 LFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLH 577
Query: 233 DG 234
DG
Sbjct: 578 DG 579
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%)
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
P + ++ ++ + K D L +M++ + N+ TY+ I FC + + A +
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
+MM G P++VT N +++ C ++ EA +L+D M++ G +PD T+ TL+ G
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 238 TGRVNHAKELFVSMESMGC 256
+ + A L M GC
Sbjct: 193 HNKASEAVALVERMVVKGC 211
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%)
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D A LF M P++V ++ ++ N ++ L +M + G+ N+ T+++
Sbjct: 56 LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++ C+ ++ A ++L M++ G P T N+LL+GFC R++ A L M MG
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 24/261 (9%)
Query: 15 TPNEALCIFDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
+ N AL + D +M V ++I++ L K+ +D LSLF + G+ D+
Sbjct: 223 SGNSALAL-DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV----------------- 115
T+S LI C G+ G +L ++ PDVVTF++LI V
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 116 ----CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
PD ITYN++IDG CK+ + +A ++F M K +P++VTY+ +I +C A
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
++ RLF E+ +G+ PN +T+N ++ C++GK++ A L M+ GV P TY L
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461
Query: 232 LDGFCLTGRVNHAKELFVSME 252
LDG C G +N A E+F M+
Sbjct: 462 LDGLCDNGELNKALEIFEKMQ 482
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P +F+ ++ ++L R+ PDL T S LIN C GRVS V+
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 94 LGRILRSCFTPDVVTFTSLI-KVCK--------------------PDAITYNTIIDGLCK 132
+ R++ F PD VT+ ++ ++CK + Y+ +ID LCK
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G D A LF +M+ K +K +VVTY+S+I G C W++ ++ EM+ + + P+VVT
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
F+ ++D K GK+ EA L + MI G+ PD TYN+L+DGFC ++ A ++F M
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 253 SMGC 256
S GC
Sbjct: 378 SKGC 381
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL++ I I N+A+ +F+ M++ P P P+ FN + +A+ K YD VL K
Sbjct: 40 ERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPID-FNRLCSAVARTKQYDLVLGFCK 94
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
+ G+ D+YT +I+INC+C+ ++ F VLGR + + PD +TF+
Sbjct: 95 GMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFS---------- 144
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
T+++G C +G V +A L +M + +P++VT +++I G C +EA L
Sbjct: 145 ----TLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDR 200
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
M++ G QP+ VT+ +++ LCK+G A L M + ++ Y+ ++D C G
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260
Query: 241 VNHAKELFVSMESMG 255
+ A LF ME G
Sbjct: 261 FDDALSLFNEMEMKG 275
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 57/296 (19%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++AL +F+ M M V +++ ++G L + +D + + + + PD+ T S
Sbjct: 262 DDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI+ F K G++ + ++ PD +T+ SLI K
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C+PD +TY+ +I+ CK VD LF ++ K + PN +TY +++ GFC + N AK
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNG------------------------------- 204
LF EM+ +GV P+VVT+ +++D LC NG
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
Query: 205 ----KMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
K+D+A SL + GV+PD TYN ++ G C G ++ A LF M+ GC
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 22/238 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA +FD M+ P + +++I++ K K D + LF+ ++S GL P+ T++
Sbjct: 367 HEANQMFDLMVS-KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAIT------------- 122
L+ FC+ G+++ + ++ P VVT+ L+ +C +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 123 -------YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
YN II G+C VD A LF + DK VKP+VVTY +I G C +EA
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
LF +M + G P+ T+N+++ + + L++ M G D+ T ++D
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N A +F M+ PP V ++ I+L L N + L +F+++ + + + ++I
Sbjct: 437 NAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
+I+ C +V + + C D K KPD +TYN +I GLCK+G +
Sbjct: 496 IIHGMCNASKVDDAWSLF------CSLSD--------KGVKPDVVTYNVMIGGLCKKGSL 541
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A LF KMK+ P+ TY +IR + + L EM G + T ++
Sbjct: 542 SEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 601
Query: 197 MDELCKNGKMDEASSLLDLM 216
+D L + ++D+ S LD++
Sbjct: 602 IDML-SDRRLDK--SFLDML 618
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 160/337 (47%), Gaps = 92/337 (27%)
Query: 11 ITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPD 70
++ I ++A+ +F M + P P + F+ +L +AK +D V+S +++ G+ +
Sbjct: 54 LSDIELDDAIGLFGVMAQSRPFPSIIE-FSKLLSAIAKMNKFDLVISFGEKMEILGISHN 112
Query: 71 LYTHSILINCFC----------------KMG-------------------RVSHGFVVLG 95
LYT++ILINCFC K+G R+S ++
Sbjct: 113 LYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVD 172
Query: 96 RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
+++ + PD VTFT+LI + C+PD +TY +++GLCK+G
Sbjct: 173 QMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRG 232
Query: 135 -----------------------------------FVDKAKELFLKMKDKNVKPNVVTYT 159
D A LF +M++K V+PNV+TY+
Sbjct: 233 DTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS 292
Query: 160 SVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
S+I C W++A RL +M+++ + PN+VTF+ ++D K GK+ +A L + MI+
Sbjct: 293 SLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR 352
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+ P+ FTY++L++GFC+ R+ AK++ M C
Sbjct: 353 SIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 56/268 (20%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG-------- 90
++ ++ L K +H D L+LF + + G+ P++ T+S LI+C C GR S
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315
Query: 91 -----------------FVVLGRILRS----------CFTPDVVTFTSLI---------- 113
FV G+++++ P++ T++SLI
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375
Query: 114 -----------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
K C P+ +TYNT+I+G CK VDK ELF +M + + N VTYT++I
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
GF A D + A+ +F +M+ GV PN++T+N+++D LCKNGK+ +A + + + + +
Sbjct: 436 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 495
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVS 250
PD +TYN +++G C G+ FV+
Sbjct: 496 PDIYTYNIMIEGMCKAGKWKMGGIYFVA 523
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHG 90
P + ++NI+L L KN + +F+ L + + PD+YT++I+I CK G+ G
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMG 517
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
Y V+R + ++A LF M P+++ F+ ++ + K K D S + M
Sbjct: 46 YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105
Query: 218 QHGVRPDAFTYNTLLDGFC 236
G+ + +TYN L++ FC
Sbjct: 106 ILGISHNLYTYNILINCFC 124
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA IFD M + P ++++ +L A + L + G+ PD Y SIL
Sbjct: 319 EARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
I + K G+V +V ++ + P+ A+TY +I LCK G V+
Sbjct: 378 ICAYAKQGKVDQAMLVFSKMRQQGLNPN--------------AVTYGAVIGILCKSGRVE 423
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
A F +M D+ + P + Y S+I G C N W A+ L +EM+D+G+ N + FN I+
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
D CK G++ E+ L +LM++ GV+P+ TYNTL++G+CL G+++ A +L M S+G
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 26/257 (10%)
Query: 22 IFDYMLR--MHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
+ D M+R +HP F+I++ AK D + +F ++ GL P+ T+ +I
Sbjct: 358 LLDLMVRNGIHPDH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414
Query: 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---VCKP------------------ 118
CK GRV + +++ +P + + SLI C
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474
Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
+ I +N+IID CK+G V ++++LF M VKPNV+TY ++I G+C A +EA +L
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
M+ G++PN VT++ +++ CK +M++A L M GV PD TYN +L G T
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 239 GRVNHAKELFVSMESMG 255
R AKEL+V + G
Sbjct: 595 RRTAAAKELYVRITESG 611
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 132/302 (43%), Gaps = 65/302 (21%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYT 73
+A +FD +LR + N L +A++ V S + R+ G + PDL T
Sbjct: 32 EDARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCT 89
Query: 74 HSILINCFCKMGRVSHGFVVLGRILRSCF------------------------------- 102
+ ILI C C+ GR+ GF LG +++ F
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 103 -----TPDVVTFTSLIK-VCK-----------------------PDAITYNTIIDGLCKQ 133
P+V ++ L+K +C PD ++Y T+I+G K+
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209
Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
G DKA + +M D+ + P+VVTY S+I C A ++A + M+ GV P+ +T+
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269
Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
N I+ C +G+ EA L M GV PD TY+ L+D C GR A+++F SM
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329
Query: 254 MG 255
G
Sbjct: 330 RG 331
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR- 99
++ G A + D + + +R+ G P++++++IL+ C R +L +
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 100 --SCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQGFV 136
PDVV++T++I + PD +TYN+II LCK +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
DKA E+ M V P+ +TY S++ G+C + EA +M GV+P+VVT++++
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
MD LCKNG+ EA + D M + G++P+ TY TLL G+ G
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 24/246 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRL---NSTGLFPDLYTHSILINCFCKMGRVSHG 90
P V S+NI+L L L L + G PD+ +++ +IN F K G
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 91 FVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDG 129
+ +L PDVVT+ S+I +CK PD +TYN+I+ G
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275
Query: 130 LCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPN 189
C G +A KM+ V+P+VVTY+ ++ C EA+++F M +G++P
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335
Query: 190 VVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFV 249
+ T+ ++ G + E LLDLM+++G+ PD + ++ L+ + G+V+ A +F
Sbjct: 336 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFS 395
Query: 250 SMESMG 255
M G
Sbjct: 396 KMRQQG 401
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 23/258 (8%)
Query: 17 NEALCIFDYML--RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
EAL + M R SPP V S+ ++ K D S + + G+ PD+ T+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234
Query: 75 SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
+ +I CK + VL ++++ PD +T+ S++
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294
Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
+PD +TY+ ++D LCK G +A+++F M + +KP + TY ++++G+ E
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
L M+ G+ P+ F++++ K GK+D+A + M Q G+ P+A TY ++
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414
Query: 234 GFCLTGRVNHAKELFVSM 251
C +GRV A F M
Sbjct: 415 ILCKSGRVEDAMLYFEQM 432
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLG-CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
E+ +F+ M+R+ P ++ ++ G CLA D + L + S GL P+ T+S
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYST 551
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
LIN +CK+ R+ V+ + S +PD+ ITYN I+ GL +
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDI--------------ITYNIILQGLFQTRRT 597
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
AKEL++++ + + + TY ++ G C ++A ++F + ++ TFN++
Sbjct: 598 AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIM 657
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D L K G+ DEA L +G+ P+ +TY + + G + +LF+SME GC
Sbjct: 658 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 717
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ + M+ + P V+ ++ ++ K + L LFK + S+G+ PD+ T++I
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 586
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP----------------- 118
++ + R + + RI S ++ T+ ++ +CK
Sbjct: 587 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646
Query: 119 ---DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
+A T+N +ID L K G D+AK+LF+ + PN TY + E
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 706
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
+LF+ M D G + N I+ EL + G++ A + L ++ + +A T + +D
Sbjct: 707 QLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 19/255 (7%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFK 60
ERL+S + I ++A+ +F M+ P P V F+ + +AK K YD VL+L K
Sbjct: 58 ERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALCK 112
Query: 61 RLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDA 120
++ G+ +LYT SI+INCFC+ ++ F +G+I++ + P+ +TF+
Sbjct: 113 QMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFS---------- 162
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
T+I+GLC +G V +A EL +M + KP+++T +++ G C + EA L +
Sbjct: 163 ----TLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDK 218
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
M++ G QPN VT+ +++ +CK+G+ A LL M + ++ DA Y+ ++DG C G
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 241 VNHAKELFVSMESMG 255
+++A LF ME G
Sbjct: 279 LDNAFNLFNEMEMKG 293
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 126/244 (51%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P +F+ ++ L L L R+ G PDL T + L+N C G+ + ++
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215
Query: 94 LGRILRSCFTPDVVTFTSLIKV-CKP--------------------DAITYNTIIDGLCK 132
+ +++ P+ VT+ ++ V CK DA+ Y+ IIDGLCK
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +D A LF +M+ K + N++TY +I GFC A W++ +L +M+ + + PNVVT
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
F+V++D K GK+ EA L MI G+ PD TY +L+DGFC ++ A ++ M
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395
Query: 253 SMGC 256
S GC
Sbjct: 396 SKGC 399
Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 14/215 (6%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
++I++ L K+ D +LF + G+ ++ T++ILI FC GR G +L ++
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 99 RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
+ P+VVTF+ LI D K+G + +A+EL +M + + P+ +TY
Sbjct: 326 KRKINPNVVTFSVLI--------------DSFVKEGKLREAEELHKEMIHRGIAPDTITY 371
Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQ 218
TS+I GFC N ++A ++ M+ +G PN+ TFN++++ CK ++D+ L M
Sbjct: 372 TSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSL 431
Query: 219 HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
GV D TYNTL+ GFC G++N AKELF M S
Sbjct: 432 RGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+ A +F+ M M + ++NI++G +D L + + + P++ T S+
Sbjct: 280 DNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LI+ F K G++ + ++ PD +T+TSLI K
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C P+ T+N +I+G CK +D ELF KM + V + VTY ++I+GFC N AK
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
LF EM+ + V PN+VT+ +++D LC NG+ ++A + + + + + D YN ++ G
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 236 CLTGRVNHAKELFVSMESMG 255
C +V+ A +LF S+ G
Sbjct: 519 CNASKVDDAWDLFCSLPLKG 538
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +F++++ K L K + G+ PD T++ LI+ FCK + +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCKP--------------------DAITYNTIIDGLCK 132
+ ++ P++ TF LI CK D +TYNT+I G C+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G ++ AKELF +M + V PN+VTY ++ G C + +A +F ++ ++ ++
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+N+I+ +C K+D+A L + GV+P TYN ++ G C G ++ A+ LF ME
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME 570
Query: 253 SMG 255
G
Sbjct: 571 EDG 573
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + +FNI++ K D L LF++++ G+ D T++ LI FC++G+++
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN----- 455
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
+ + F V + P+ +TY ++DGLC G +KA E+F K++ ++
Sbjct: 456 ---VAKELFQEMVS------RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
++ Y +I G C A+ ++A LF + +GV+P V T+N+++ LCK G + EA L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M + G PD +TYN L+ G + +L ++ G
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%)
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
P I ++ + + K D L +M+ K + N+ T + +I FC A
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
+++ G +PN +TF+ +++ LC G++ EA L+D M++ G +PD T NTL++G CL
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 238 TGRVNHAKELFVSMESMGC 256
+G+ A L M GC
Sbjct: 206 SGKEAEAMLLIDKMVEYGC 224
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
PP + ++ I+L L N + L +F+++ + + D+ ++I+I+ C +V +
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529
Query: 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
+ C P +K KP TYN +I GLCK+G + +A+ LF KM++
Sbjct: 530 LF------CSLP--------LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
P+ TY +IR D ++ +L E+ G + T +++D L +G++ + S
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML-SDGRLKK--SF 632
Query: 213 LDLM 216
LD++
Sbjct: 633 LDML 636
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 21/246 (8%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
+R + P V S+N ++ + K + L L + +G L T ILI+ FCK G+
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPDAITYNT 125
+ L + D+V +TSLI+ C P AITYNT
Sbjct: 228 MDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
+I G CK G + +A E+F M ++ V+PNV TYT +I G C EA +L M+++
Sbjct: 288 LIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKD 347
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
+PN VT+N+I+++LCK+G + +A +++LM + RPD TYN LL G C G ++ A
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407
Query: 246 ELFVSM 251
+L M
Sbjct: 408 KLLYLM 413
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 21/237 (8%)
Query: 40 NIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILR 99
N ++ L ++++++ S ++++ T F + + S L+ C+ +M + F VL +L+
Sbjct: 76 NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135
Query: 100 SCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFVDK 138
F +V L+K +C+ PD +YNT+I G C+ ++K
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195
Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
A EL +MK ++VT+ +I FC A +EA EM G++ ++V + ++
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255
Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
C G++D +L D +++ G P A TYNTL+ GFC G++ A E+F M G
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 24/261 (9%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EAL + + M+ P V+ +NI++ L K+ + + + + PD T++IL
Sbjct: 335 EALQLLNLMIEKDEEPNAVT-YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393
Query: 78 INCFCKMGRVSHGFVVLGRILR-SCFT-PDVVTFTSLIK-VCKP---------------- 118
+ C G + +L +L+ S +T PDV+++ +LI +CK
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453
Query: 119 ----DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
D +T N +++ K G V+KA EL+ ++ D + N TYT++I GFC N A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
K L +M +QP+V +N ++ LCK G +D+A L + M + PD ++N ++DG
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573
Query: 235 FCLTGRVNHAKELFVSMESMG 255
G + A+ L V M G
Sbjct: 574 SLKAGDIKSAESLLVGMSRAG 594
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 23/234 (9%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++ I++ K D + K + GL DL ++ LI FC G + G + +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273
Query: 98 LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
L +P +T+ +LI+ CK P+ TY +IDGLC G
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKT 333
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A +L M +K+ +PN VTY +I C +A + M + +P+ +T+N++
Sbjct: 334 KEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393
Query: 197 MDELCKNGKMDEASSLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHAKELF 248
+ LC G +DEAS LL LM++ PD +YN L+ G C R++ A +++
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIY 447
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 26/262 (9%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL--NSTGLFPDLYTHS 75
+A+ I + M + P ++ +NI+LG L D L + +S+ PD+ +++
Sbjct: 370 DAVEIVELMKKRRTRPDNIT-YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYN 428
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------- 113
LI+ CK R+ + ++ D VT L+
Sbjct: 429 ALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDS 488
Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
K+ + ++ TY +IDG CK G ++ AK L KM+ ++P+V Y ++ C ++
Sbjct: 489 KIVR-NSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQ 547
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
A RLF EM P+VV+FN+++D K G + A SLL M + G+ PD FTY+ L++
Sbjct: 548 AWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607
Query: 234 GFCLTGRVNHAKELFVSMESMG 255
F G ++ A F M G
Sbjct: 608 RFLKLGYLDEAISFFDKMVDSG 629
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 119/234 (50%), Gaps = 21/234 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++AL I+D ++ + V++ NI+L K + + L+K+++ + + + T++
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499
Query: 77 LINCFCKMG--RVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
+I+ FCK G V+ G + R+ +P YN ++ LCK+G
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRV----------------SELQPSVFDYNCLLSSLCKEG 543
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
+D+A LF +M+ N P+VV++ +I G A D A+ L + M G+ P++ T++
Sbjct: 544 SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYS 603
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT-GRVNHAKEL 247
+++ K G +DEA S D M+ G PDA +++L +C++ G + EL
Sbjct: 604 KLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK-YCISQGETDKLTEL 656
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
+R+ P V +N +L L K D LF+ + FPD+ + +I+I+ K G
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
+ +L + R+ +PD+ TY+ +I+ K G++D+A F KM
Sbjct: 580 IKSAESLLVGMSRAGLSPDL--------------FTYSKLINRFLKLGYLDEAISFFDKM 625
Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC-KNGK 205
D +P+ SV++ + ++ L +++D+ + + +MD +C +
Sbjct: 626 VDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSAN 685
Query: 206 MDEASSLL 213
MD A LL
Sbjct: 686 MDLAKRLL 693
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%)
Query: 106 VVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGF 165
V F + A N ++ L + + A + KM + + N V+ + ++ +
Sbjct: 58 VSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECY 117
Query: 166 CYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDA 225
A + M+ +G NV N+++ LC+N + +A SLL M ++ + PD
Sbjct: 118 VQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDV 177
Query: 226 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
F+YNT++ GFC + A EL M+ GC
Sbjct: 178 FSYNTVIRGFCEGKELEKALELANEMKGSGC 208
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 16/241 (6%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
P ++L +F M + P ++ +L L + + +K + GL P + + +
Sbjct: 102 PFDSLRVFHKM-KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLN 160
Query: 76 ILINCFCKM-GRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
+LI C+ G V G + + + + C PD+ TY T+I GLC+ G
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPK--------------RGCDPDSYTYGTLISGLCRFG 206
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
+D+AK+LF +M +K+ P VVTYTS+I G C + + +EA R EM +G++PNV T++
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
+MD LCK+G+ +A L ++M+ G RP+ TY TL+ G C ++ A EL M
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326
Query: 255 G 255
G
Sbjct: 327 G 327
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 15/220 (6%)
Query: 33 PPPVSSFNIMLGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
PP V+S N+++ L +N D L +F + G PD YT+ LI+ C+ GR+
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEA- 211
Query: 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
+ FT V K C P +TY ++I+GLC VD+A +MK K +
Sbjct: 212 -------KKLFTEMVE------KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGI 258
Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
+PNV TY+S++ G C +A LF MM +G +PN+VT+ ++ LCK K+ EA
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVE 318
Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
LLD M G++PDA Y ++ GFC + A M
Sbjct: 319 LLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 118 PDAITYNTIIDGLCKQ-GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P + N +I LC+ G VD ++FL+M + P+ TY ++I G C +EAK+
Sbjct: 154 PTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKK 213
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF EM+++ P VVT+ +++ LC + +DEA L+ M G+ P+ FTY++L+DG C
Sbjct: 214 LFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273
Query: 237 LTGRVNHAKELFVSMESMGC 256
GR A ELF M + GC
Sbjct: 274 KDGRSLQAMELFEMMMARGC 293
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 56/257 (21%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA +F M+ P V ++ ++ L +K+ D + + + S G+ P+++T+S
Sbjct: 209 DEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSS 267
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
L++ CK GR + ++ + C+P+ +TY T+I GLCK+ +
Sbjct: 268 LMDGLCKDGRSLQAMELFEMMM--------------ARGCRPNMVTYTTLITGLCKEQKI 313
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV- 195
+A EL +M + +KP+ Y VI GFC + + EA EM+ G+ PN +T+N+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 196 ----------------------------------------IMDELCKNGKMDEASSLLDL 215
++ LCK G+ +A L+D
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433
Query: 216 MIQHGVRPDAFTYNTLL 232
++ G P T+ L+
Sbjct: 434 IVTDGCIPSKGTWKLLI 450
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 36/154 (23%)
Query: 139 AKELFLK-----------------------------------MKDKNVKPNVVTYTSVIR 163
A++L ++ MKD + P+ Y +V+
Sbjct: 70 AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129
Query: 164 GFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-GKMDEASSLLDLMIQHGVR 222
N N A + + M + G+ P V + NV++ LC+N G +D + M + G
Sbjct: 130 ILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCD 189
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
PD++TY TL+ G C GR++ AK+LF M C
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA+ ++ M+ + P + +++ ++ L K + D+V+ L K + + GL P++YT +I
Sbjct: 206 EAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTIC 264
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
I + G+++ + +L R+ + C PD +TY +ID LC +D
Sbjct: 265 IRVLGRAGKINEAYEILKRMDD--------------EGCGPDVVTYTVLIDALCTARKLD 310
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
AKE+F KMK KP+ VTY +++ F D + K+ + EM G P+VVTF +++
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
D LCK G EA LD+M G+ P+ TYNTL+ G R++ A ELF +MES+G
Sbjct: 371 DALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 15/223 (6%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + ++N+++G L + + +F ++ STG PD+ T++ L++ + K G++ F
Sbjct: 783 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELF-- 840
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
+ + T + C+ + IT+N +I GL K G VD A +L+ M D++
Sbjct: 841 --ELYKEMSTHE----------CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
P TY +I G + EAK+LF M+D G +PN +N++++ K G+ D A +L
Sbjct: 889 PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACAL 948
Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M++ GVRPD TY+ L+D C+ GRV+ F ++ G
Sbjct: 949 FKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 15/236 (6%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
AL F+ M + P + + N L LAK +F L GL PD T+++++
Sbjct: 452 ALETFEKM-KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDK 138
C+ K+G + +L ++ + C+PD I N++I+ L K VD+
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENG--------------CEPDVIVVNSLINTLYKADRVDE 556
Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
A ++F++MK+ +KP VVTY +++ G EA LF M+ +G PN +TFN + D
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
LCKN ++ A +L M+ G PD FTYNT++ G G+V A F M+ +
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA D M R P + ++N ++ L + D L LF + S G+ P YT+ +
Sbjct: 381 EAFDTLDVM-RDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVV----TFTSLIKVCK---------------- 117
I+ + K G ++ P++V + SL K +
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGL 499
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD++TYN ++ K G +D+A +L +M + +P+V+ S+I A+ +EA +
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWK 559
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+F+ M + ++P VVT+N ++ L KNGK+ EA L + M+Q G P+ T+NTL D C
Sbjct: 560 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 619
Query: 237 LTGRVNHAKELFVSMESMGC 256
V A ++ M MGC
Sbjct: 620 KNDEVTLALKMLFKMMDMGC 639
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA +F+ ML + P + +NI++ K D +LFKR+ G+ PDL T+S+L
Sbjct: 909 EAKQLFEGMLD-YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 967
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
++C C +GRV G + S PDVV YN II+GL K ++
Sbjct: 968 VDCLCMVGRVDEGLHYFKELKESGLNPDVVC--------------YNLIINGLGKSHRLE 1013
Query: 138 KAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A LF +MK + + P++ TY S+I A EA +++ E+ G++PNV TFN +
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
+ +GK + A ++ M+ G P+ TY L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 15/240 (6%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++AL ++ ++ P ++ ++ L+K+ LF+ + G P+ ++I
Sbjct: 872 DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNI 931
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
LIN F K G + R+++ + +PD TY+ ++D LC G V
Sbjct: 932 LINGFGKAGEADAACALFKRMVK--------------EGVRPDLKTYSVLVDCLCMVGRV 977
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM-MDQGVQPNVVTFNV 195
D+ F ++K+ + P+VV Y +I G ++ EA LF EM +G+ P++ T+N
Sbjct: 978 DEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNS 1037
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++ L G ++EA + + + + G+ P+ FT+N L+ G+ L+G+ HA ++ +M + G
Sbjct: 1038 LILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 21/243 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V +F I + L + + + KR++ G PD+ T+++LI+ C ++ V
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315
Query: 94 LGRILRSCFTPDVVTFTSLIKVCK---------------------PDAITYNTIIDGLCK 132
++ PD VT+ +L+ PD +T+ ++D LCK
Sbjct: 316 FEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +A + M+D+ + PN+ TY ++I G + ++A LF M GV+P T
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+ V +D K+G A + M G+ P+ N L GR AK++F ++
Sbjct: 436 YIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK 495
Query: 253 SMG 255
+G
Sbjct: 496 DIG 498
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 42 MLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL---INCFCKMGRVSHGFVVLGRIL 98
++G + D +S +RL + G+ D SIL I CK VS R L
Sbjct: 719 LIGSILAEAGIDNAVSFSERLVANGICRD--GDSILVPIIRYSCKHNNVSGA-----RTL 771
Query: 99 RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
FT D+ +P TYN +I GL + ++ A+++FL++K P+V TY
Sbjct: 772 FEKFTKDLGV--------QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATY 823
Query: 159 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMI 217
++ + + +E L+ EM + N +T N+++ L K G +D+A L DLM
Sbjct: 824 NFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
P A TY L+DG +GR+ AK+LF M GC
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 14/197 (7%)
Query: 59 FKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP 118
+++ G + Y+++ LI+ K + V R++ F P + T++SL+
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMV---- 231
Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
GL K+ +D L +M+ +KPNV T+T IR A NEA +
Sbjct: 232 ----------GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
M D+G P+VVT+ V++D LC K+D A + + M +PD TY TLLD F
Sbjct: 282 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341
Query: 239 GRVNHAKELFVSMESMG 255
++ K+ + ME G
Sbjct: 342 RDLDSVKQFWSEMEKDG 358
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 59/295 (20%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
EA+ +F+ M++ PP +FN + CL KN L + ++ G PD++T++
Sbjct: 590 QEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648
Query: 77 LINCFCKMGRVSHG--------------FVVL---------------------------- 94
+I K G+V FV L
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708
Query: 95 ------------GRILRSCFTPDVVTFTSLI---KVCKPDAITYNTIIDGLCKQGFVDKA 139
G IL + V+F+ + +C+ II CK V A
Sbjct: 709 DQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGA 768
Query: 140 KELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
+ LF K KD V+P + TY +I G A+ A+ +F+++ G P+V T+N ++D
Sbjct: 769 RTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLD 828
Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
K+GK+DE L M H + T+N ++ G G V+ A +L+ + S
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%)
Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
++ K D TY TI L +G + +A KM++ N +Y +I + E
Sbjct: 147 RIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 206
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
A ++ M+ +G +P++ T++ +M L K +D LL M G++P+ +T+ +
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR 266
Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
G++N A E+ M+ GC
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGC 289
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%)
Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEM 181
T N +++ L G +++ +F M+ + +K + TY ++ + +A +M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179
Query: 182 MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 241
+ G N ++N ++ L K+ EA + MI G RP TY++L+ G +
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239
Query: 242 NHAKELFVSMESMG 255
+ L ME++G
Sbjct: 240 DSVMGLLKEMETLG 253
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 22/244 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V ++ +++ L ++ L+L K + TG+ P+++T+++LI+ C + +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
LG++L P+V+T+ +LI CK P+ TYN +I G CK
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
V KA + KM ++ V P+VVTY S+I G C + +++ A RL M D+G+ P+ T
Sbjct: 441 SN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+ ++D LCK+ +++EA L D + Q GV P+ Y L+DG+C G+V+ A + M
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 253 SMGC 256
S C
Sbjct: 560 SKNC 563
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 21/239 (8%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
+ +N +L LA+ D + ++ + + P++YT++ ++N +CK+G V +
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242
Query: 96 RILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCKQG 134
+I+ + PD T+TSLI K C+ + + Y +I GLC
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
+D+A +LF+KMKD P V TYT +I+ C + +EA L EM + G++PN+ T+
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
V++D LC K ++A LL M++ G+ P+ TYN L++G+C G + A ++ MES
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 20/242 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + ++ +++ L ++ L ++ GL P++ T++ LIN +CK G + V
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCK-------------------PDAITYNTIIDGLCKQ 133
+ + +P+ T+ LIK CK PD +TYN++IDG C+
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475
Query: 134 GFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTF 193
G D A L M D+ + P+ TYTS+I C + EA LF + +GV PNVV +
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 194 NVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
++D CK GK+DEA +L+ M+ P++ T+N L+ G C G++ A L M
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 254 MG 255
+G
Sbjct: 596 IG 597
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V ++N ++ ++ ++D+ L +N GL PD +T++ +I+ CK RV +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
+ + P+VV +T+LI DG CK G VD+A + KM KN P
Sbjct: 520 FDSLEQKGVNPNVVMYTALI--------------DGYCKAGKVDEAHLMLEKMLSKNCLP 565
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
N +T+ ++I G C EA L +M+ G+QP V T +++ L K+G D A S
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625
Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M+ G +PDA TY T + +C GR+ A+++ M G
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 33/254 (12%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA + + ML + P ++ FN ++ L + L +++ GL P + T +I
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLT-FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
LI+ K G H + ++L S KPDA TY T I C++G +
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSG--------------TKPDAHTYTTFIQTYCREGRL 653
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
A+++ KM++ V P++ TY+S+I+G+ N A + M D G +P+ TF +
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713
Query: 197 MD---------------ELCKNGKM---DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
+ ELC M D LL+ M++H V P+A +Y L+ G C
Sbjct: 714 IKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEV 773
Query: 239 GRVNHAKELFVSME 252
G + A+++F M+
Sbjct: 774 GNLRVAEKVFDHMQ 787
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 75/298 (25%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P VS+ I++ L K+ +D S F+++ S+G PD +T++ I +C+ GR+ +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659
Query: 94 LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
+ ++ + +PD+ T++SLIK C+P T+ ++I L +
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719
Query: 133 QGF------------------VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
+ D EL KM + +V PN +Y +I G C + A
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779
Query: 175 KRLFIEMM-DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI---------------- 217
+++F M ++G+ P+ + FN ++ CK K +EA+ ++D MI
Sbjct: 780 EKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLIC 839
Query: 218 -------------------QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
Q G D + ++DG G V ELF ME GC
Sbjct: 840 GLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGC 897
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 75/134 (55%)
Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
YNT+++ L + G VD+ K+++++M + V PN+ TY ++ G+C + EA + +++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
+ G+ P+ T+ ++ C+ +D A + + M G R + Y L+ G C+ R++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 243 HAKELFVSMESMGC 256
A +LFV M+ C
Sbjct: 306 EAMDLFVKMKDDEC 319
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
+FD+M R P FN +L C K K ++ + + G P L + +LI
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841
Query: 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
K G G V +L+ + D + + IIDG+ KQG V+ E
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYY--------------EDELAWKIIIDGVGKQGLVEAFYE 887
Query: 142 LFLKMKDKNVKPNVVTYTSVIRG 164
LF M+ K + TY+ +I G
Sbjct: 888 LFNVMEKNGCKFSSQTYSLLIEG 910
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 75/252 (29%)
Query: 58 LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK--- 114
+ ++ G+ PDL+T+S LI + +G+ + F VL R+ + P TF SLIK
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718
Query: 115 -------------VCK-----------------------PDAITYNTIIDGLCKQGFVDK 138
+C P+A +Y +I G+C+ G +
Sbjct: 719 EMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRV 778
Query: 139 AKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV------- 190
A+++F M +++ + P+ + + +++ C NEA ++ +M+ G P +
Sbjct: 779 AEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLI 838
Query: 191 ----------------------------VTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
+ + +I+D + K G ++ L ++M ++G +
Sbjct: 839 CGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCK 898
Query: 223 PDAFTYNTLLDG 234
+ TY+ L++G
Sbjct: 899 FSSQTYSLLIEG 910
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 15/236 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA+ +FD M+ + +P V +FN ++ L +L ++ GL D+ T+ +
Sbjct: 209 EAVALFDQMVEIGLTPV-VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
+N CKMG +L ++ + KPD + Y+ IID LCK G
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHI--------------KPDVVIYSAIIDRLCKDGHHS 313
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
A+ LF +M +K + PNV TY +I GFC W++A+RL +M+++ + P+V+TFN ++
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
K GK+ EA L D M+ + PD TYN+++ GFC R + AK +F M S
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 135/272 (49%), Gaps = 39/272 (14%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A+ FDYM+R P V N ++G + D +SL++++ + ++Y+ +I
Sbjct: 88 DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAITYNTIIDG-LCKQG 134
LI CFC ++S G++ + F PDVVTF +L+ +C D I+ + G + + G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--------- 185
F++ A LF +M + + P V+T+ ++I G C EA L +M+ +G
Sbjct: 207 FLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265
Query: 186 --------------------------VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQH 219
++P+VV ++ I+D LCK+G +A L M++
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325
Query: 220 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
G+ P+ FTYN ++DGFC GR + A+ L M
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM 357
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 53/289 (18%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
AL + M H P V ++ ++ L K+ H+ LF + G+ P+++T++ +I
Sbjct: 280 ALNLLSKMEETHIKPDVVI-YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------KVC--------- 116
+ FC GR S +L ++ PDV+TF +LI K+C
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398
Query: 117 ------------------------------KPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
PD +T+NTIID C+ VD+ +L ++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 206
+ + N TY ++I GFC ++ N A+ LF EM+ GV P+ +T N+++ C+N K+
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 207 DEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+EA L +++ + D YN ++ G C +V+ A +LF S+ G
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 30/260 (11%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
E LC D ML P V+ +N M+ K+ +D +F + S PD+ T + +
Sbjct: 386 EKLC--DEMLHRCIFPDTVT-YNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTI 438
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK----------------------V 115
I+ +C+ RV G +L I R + T+ +LI V
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C PD IT N ++ G C+ +++A ELF ++ + + V Y +I G C + +EA
Sbjct: 499 C-PDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
LF + GV+P+V T+NV++ C + +A+ L M +G PD TYNTL+ G
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGC 617
Query: 236 CLTGRVNHAKELFVSMESMG 255
G ++ + EL M S G
Sbjct: 618 LKAGEIDKSIELISEMRSNG 637
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 26/238 (10%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A +FD M + P V +FN ++ + K D + L + ++ GL + T++
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVT-------------------FTSLIKVCK 117
LI+ FC++ ++ + ++ PD +T +I++ K
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532
Query: 118 PD--AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
D + YN II G+CK VD+A +LF + V+P+V TY +I GFC + ++A
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
LF +M D G +P+ T+N ++ K G++D++ L+ M +G DAFT + D
Sbjct: 593 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%)
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
+D A + F M V VI F N + A L+ +M + + N+ +FN+
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
++ C K+ + S + + G +PD T+NTLL G CL R++ A LF M G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 21/241 (8%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
V+S+NI++ + + L + G PD+ ++S ++N +C+ G + + ++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305
Query: 96 RILRSCFTPDVVTFTSLI----KVCK-----------------PDAITYNTIIDGLCKQG 134
+ R P+ + S+I ++CK PD + Y T+IDG CK+G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
+ A + F +M +++ P+V+TYT++I GFC D EA +LF EM +G++P+ VTF
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
+++ CK G M +A + + MIQ G P+ TY TL+DG C G ++ A EL M +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
Query: 255 G 255
G
Sbjct: 486 G 486
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 22/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA F M+R P V + ++ K F ++S + PD+ T++ +
Sbjct: 334 EAEEAFSEMIRQGILPDTVV-YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV---------------------C 116
I+ FC++G + + + PD VTFT LI C
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ +TY T+IDGLCK+G +D A EL +M ++PN+ TY S++ G C + + EA +
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
L E G+ + VT+ +MD CK+G+MD+A +L M+ G++P T+N L++GFC
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572
Query: 237 LTGRVNHAKELFVSMESMG 255
L G + ++L M + G
Sbjct: 573 LHGMLEDGEKLLNWMLAKG 591
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 137/259 (52%), Gaps = 21/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
A F Y + P V ++ ++ + LF + GL PD T + L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
IN +CK G + F V ++++ +P+VVT+T+LI +CK
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P+ TYN+I++GLCK G +++A +L + + + + VTYT+++ +C + + ++A+
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+ EM+ +G+QP +VTFNV+M+ C +G +++ LL+ M+ G+ P+A T+N+L+ +C
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Query: 237 LTGRVNHAKELFVSMESMG 255
+ + A ++ M S G
Sbjct: 608 IRNNLKAATAIYKDMCSRG 626
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 15/239 (6%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+A + ++M++ SP V ++ ++ L K D+ L + GL P+++T++
Sbjct: 438 KDAFRVHNHMIQAGCSPN-VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
++N CK G + ++G + D VT+T T++D CK G +
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT--------------TLMDAYCKSGEM 542
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
DKA+E+ +M K ++P +VT+ ++ GFC + ++L M+ +G+ PN TFN +
Sbjct: 543 DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 602
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+ + C + A+++ M GV PD TY L+ G C + A LF M+ G
Sbjct: 603 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 132/261 (50%), Gaps = 23/261 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYD-TVLSLFKRLNSTGLFPDLYTHSI 76
EA +F+ ML + V S N+ L L+K+ + T + +F+ G+ ++ +++I
Sbjct: 193 EARRVFEKMLN-YGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNI 251
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
+I+ C++GR+ +L + +TPDV+++++++ K
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KP++ Y +II LC+ + +A+E F +M + + P+ V YT++I GFC D A
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
+ F EM + + P+V+T+ I+ C+ G M EA L M G+ PD+ T+ L++G+
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Query: 236 CLTGRVNHAKELFVSMESMGC 256
C G + A + M GC
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGC 452
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + ++N ++ L K+ + + + L + GL D T++ L++ +CK G + +
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 94 LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
L +L P +VTF L+ K P+A T+N+++ C
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+ + A ++ M + V P+ TY ++++G C A + EA LF EM +G +V T
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 668
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
++V++ K K EA + D M + G+ D ++ D
Sbjct: 669 YSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++ ++ K+ D + K + GL P + T ++L+N FC G + G +L +
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 98 LRSCFTPDVVTFTSLIK-----------------VCK----PDAITYNTIIDGLCKQGFV 136
L P+ TF SL+K +C PD TY ++ G CK +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A LF +MK K +V TY+ +I+GF + EA+ +F +M +G+ + F+
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFF 707
Query: 197 MDELCKNGKMDEASSLLDLMIQH 219
D K + D +D +I++
Sbjct: 708 SDTKYKGKRPDTIVDPIDEIIEN 730
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 130/240 (54%), Gaps = 21/240 (8%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++ +++ L KN +++++ G+FP+LYT++ ++N CK GR F V +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294
Query: 98 LRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQGFV 136
+ ++VT+ +LI +C+ P+ ITYNT+IDG C G +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
KA L +K + + P++VTY ++ GFC D + A ++ EM ++G++P+ VT+ ++
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D ++ M++A L M + G+ PD TY+ L+ GFC+ G++N A LF SM C
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC 474
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 50/257 (19%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + FN +L + + ++ S F N + + D+Y+ ILI C+ G + F +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFL--------- 144
L + F+P+VV +T T+IDG CK+G ++KAK+LF
Sbjct: 186 LIELTEFGFSPNVVIYT--------------TLIDGCCKKGEIEKAKDLFFEMGKLGLVA 231
Query: 145 --------------------------KMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
KM++ V PN+ TY V+ C +A ++F
Sbjct: 232 NERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVF 291
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
EM ++GV N+VT+N ++ LC+ K++EA+ ++D M G+ P+ TYNTL+DGFC
Sbjct: 292 DEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGV 351
Query: 239 GRVNHAKELFVSMESMG 255
G++ A L ++S G
Sbjct: 352 GKLGKALSLCRDLKSRG 368
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 126/235 (53%), Gaps = 15/235 (6%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+A +FD M R + ++N ++G L + + + ++ S G+ P+L T++ L
Sbjct: 286 DAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVD 137
I+ FC +G+ LG+ L C D+ + + P +TYN ++ G C++G
Sbjct: 345 IDGFCGVGK-------LGKALSLC--RDLKS-----RGLSPSLVTYNILVSGFCRKGDTS 390
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
A ++ +M+++ +KP+ VTYT +I F +++ +A +L + M + G+ P+V T++V++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
C G+M+EAS L M++ P+ YNT++ G+C G A +L ME
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEME 505
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
NEA + D M + P + ++N ++ LSL + L S GL P L T++I
Sbjct: 320 NEANKVVDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK------------------- 117
L++ FC+ G S ++ + P VT+T LI
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
PD TY+ +I G C +G +++A LF M +KN +PN V Y ++I G+C A
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRP 223
+L EM ++ + PNV ++ +++ LCK K EA L++ MI G+ P
Sbjct: 499 KLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDP 546
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++ I++ A++ + + + L + GL PD++T+S+LI+ FC G+++
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA--- 462
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKP 153
R+ +S K C+P+ + YNT+I G CK+G +A +L +M++K + P
Sbjct: 463 -SRLFKSMVE----------KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP 511
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
NV +Y +I C EA+RL +M+D G+ P+ ++I
Sbjct: 512 NVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 34/164 (20%)
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
+I G F + L + + K Y +I + + N + F EM+D G
Sbjct: 65 VISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNG 124
Query: 186 VQP----------------------------------NVVTFNVIMDELCKNGKMDEASS 211
P +V +F +++ C+ G+++++
Sbjct: 125 FVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFD 184
Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
LL + + G P+ Y TL+DG C G + AK+LF M +G
Sbjct: 185 LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLG 228
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 22/242 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P VS +N ++ L K Y L + + G+ P++ ++S LIN C G++ F
Sbjct: 244 PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSF 303
Query: 94 LGRILRSCFTPDVVTFTSLIKVC----------------------KPDAITYNTIIDGLC 131
L ++L+ P++ T +SL+K C +P+ + YNT++ G C
Sbjct: 304 LTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFC 363
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
G + KA +F M++ PN+ TY S+I GF + A ++ +M+ G PNVV
Sbjct: 364 SHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVV 423
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+ +++ LC++ K EA SL+++M + P T+N + G C GR++ A+++F M
Sbjct: 424 VYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM 483
Query: 252 ES 253
E
Sbjct: 484 EQ 485
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 17/249 (6%)
Query: 25 YMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKM 84
Y ++ P V +N +L L + +++ + G P+++T+++L+ CK
Sbjct: 135 YRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKN 194
Query: 85 GRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK---------------PDAITYNTIID 128
+V +L + PD V++T++I +C+ P YN +I+
Sbjct: 195 NKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALIN 254
Query: 129 GLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 188
GLCK+ A EL +M +K + PNV++Y+++I C + A +M+ +G P
Sbjct: 255 GLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314
Query: 189 NVVTFNVIMDELCKNGKMDEASSLLDLMIQ-HGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
N+ T + ++ G +A L + MI+ G++P+ YNTL+ GFC G + A +
Sbjct: 315 NIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSV 374
Query: 248 FVSMESMGC 256
F ME +GC
Sbjct: 375 FSHMEEIGC 383
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 22/256 (8%)
Query: 15 TPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH 74
T +AL +++ M+R P V ++N ++ + + +S+F + G P++ T+
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTY 390
Query: 75 SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV------------------- 115
LIN F K G + + ++L S P+VV +T++++
Sbjct: 391 GSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSK 450
Query: 116 --CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN-VKPNVVTYTSVIRGFCYANDWN 172
C P T+N I GLC G +D A+++F +M+ ++ PN+VTY ++ G AN
Sbjct: 451 ENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIE 510
Query: 173 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLL 232
EA L E+ +GV+ + T+N ++ C G A L+ M+ G PD T N ++
Sbjct: 511 EAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMII 570
Query: 233 DGFCLTGRVNHAKELF 248
+C G+ A ++
Sbjct: 571 LAYCKQGKAERAAQML 586
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 55 VLSLFKRLNSTGLFPDL-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI 113
L FK + ++ LF T ++I G+V +L ++ F F S+I
Sbjct: 59 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118
Query: 114 KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNE 173
V + + G ++A E+F ++K+ P+V Y V+ N
Sbjct: 119 SVYR--------------QVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
++ +M G +PNV T+NV++ LCKN K+D A LL M G PDA +Y T++
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224
Query: 234 GFCLTGRVNHAKELFVSME 252
C G V +EL E
Sbjct: 225 SMCEVGLVKEGRELAERFE 243
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
+F M + H PP + ++N +L LAK + L + + G+ T++ L++
Sbjct: 479 VFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGS 538
Query: 82 CKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKE 141
C G ++G+++ + PD IT N II CKQG ++A +
Sbjct: 539 CNAGLPGIALQLVGKMM--------------VDGKSPDEITMNMIILAYCKQGKAERAAQ 584
Query: 142 LF--LKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
+ + + +P+V++YT+VI G C +N + L M+ G+ P++ T++V+++
Sbjct: 585 MLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%)
Query: 117 KPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
K +T+ +I L G VD + L +MK + + + SVI + A
Sbjct: 73 KHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVE 132
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
+F + + G P+V +N ++D L ++ + M + G P+ FTYN LL C
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192
Query: 237 LTGRVNHAKELFVSMESMGC 256
+V+ AK+L V M + GC
Sbjct: 193 KNNKVDGAKKLLVEMSNKGC 212
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
R P +S N++ G N D V+ L +R+ S G+ P + T S+LINCF
Sbjct: 593 RRKWRPDVISYTNVIWGLCRSNCREDGVI-LLERMISAGIVPSIATWSVLINCF 645
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 21/233 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + +N ++ L K + + LF R+ GL P+ T+SILI+ FC+ G++
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424
Query: 94 LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
LG ++ + V + SLI K +P +TY +++ G C
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+G ++KA L+ +M K + P++ T+T+++ G A +A +LF EM + V+PN VT
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVT 544
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
+NV+++ C+ G M +A L M + G+ PD ++Y L+ G CLTG+ + AK
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK 597
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA +FD M ++ P V+ ++I++ + DT LS + TGL +Y ++
Sbjct: 384 HEAELLFDRMGKIGLRPNDVT-YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LIN CK G +S + ++ P VVT+TSL+ K
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
P T+ T++ GL + G + A +LF +M + NVKPN VTY +I G+C D ++A
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAF 562
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
EM ++G+ P+ ++ ++ LC G+ EA +D + + + Y LL GF
Sbjct: 563 EFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGF 622
Query: 236 CLTGRVNHAKELFVSMESMG 255
C G++ A + M G
Sbjct: 623 CREGKLEEALSVCQEMVQRG 642
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 56/290 (19%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+ + +F M+ P V + + +L L K +H+ + LF + S G+ PD+Y ++ +
Sbjct: 174 DGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGV 233
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVC 116
I C++ +S ++ + + ++V + LI K
Sbjct: 234 IRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDL 293
Query: 117 KPDAITYNTIIDGLC-----------------------------------KQGFVDKAKE 141
KPD +TY T++ GLC K+G +++A
Sbjct: 294 KPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALN 353
Query: 142 LFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 201
L ++ D V PN+ Y ++I C ++EA+ LF M G++PN VT+++++D C
Sbjct: 354 LVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFC 413
Query: 202 KNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+ GK+D A S L M+ G++ + YN+L++G C G ++ A+ M
Sbjct: 414 RRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
+ +++ K+K L K ++ GL PD ++ +I+ K G F + ++
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 99 RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTY 158
+ C P+ +TY +I+GLCK GFV++A+ L KM+ + PN VTY
Sbjct: 710 N--------------EGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTY 755
Query: 159 -----------------------------------TSVIRGFCYANDWNEAKRLFIEMMD 183
+IRGFC EA L M+
Sbjct: 756 GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 184 QGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
GV P+ +T+ +++ELC+ + +A L + M + G+RPD YNTL+ G C+ G +
Sbjct: 816 DGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
Query: 244 AKELFVSMESMG 255
A EL M G
Sbjct: 876 ATELRNEMLRQG 887
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 23 FDYMLRMHPS--PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
F + MH P + M+ +K + ++ + + G P+ T++ +IN
Sbjct: 667 FGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVING 726
Query: 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTF---------------------TSLIKVCKPD 119
CK G V+ V+ ++ P+ VT+ +++K +
Sbjct: 727 LCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLAN 786
Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFI 179
TYN +I G C+QG +++A EL +M V P+ +TYT++I C ND +A L+
Sbjct: 787 TATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWN 846
Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNT 230
M ++G++P+ V +N ++ C G+M +A+ L + M++ G+ P+ T T
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 21/241 (8%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
P + +F +L L + + LF + + P+ T++++I +C+ G +S F
Sbjct: 504 APSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFE 563
Query: 93 VLGRILRSCFTPDVVTFTSLI------------KV---------CKPDAITYNTIIDGLC 131
L + PD ++ LI KV C+ + I Y ++ G C
Sbjct: 564 FLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFC 623
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
++G +++A + +M + V ++V Y +I G D L EM D+G++P+ V
Sbjct: 624 REGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDV 683
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+ ++D K G EA + DLMI G P+ TY +++G C G VN A+ L M
Sbjct: 684 IYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKM 743
Query: 252 E 252
+
Sbjct: 744 Q 744
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
P V T + ++ L K A L + M+ G+RPD + Y ++ C ++ AKE+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249
Query: 248 FVSMESMGC 256
ME+ GC
Sbjct: 250 IAHMEATGC 258
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 22/260 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
EA+ F M R P S N +L AK D V FK + G P ++T++I
Sbjct: 209 EEAIQCFSKMKRFRVFPK-TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK---------------------V 115
+I+C CK G V + + PD VT+ S+I
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
C+PD ITYN +I+ CK G + E + +MK +KPNVV+Y++++ FC +A
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
+ +++M G+ PN T+ ++D CK G + +A L + M+Q GV + TY L+DG
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 447
Query: 236 CLTGRVNHAKELFVSMESMG 255
C R+ A+ELF M++ G
Sbjct: 448 CDAERMKEAEELFGKMDTAG 467
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 56/280 (20%)
Query: 32 SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
+ P V ++NIM+ C+ K + LF+ + GL PD T++ +I+ F K+GR+
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 92 VVLGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGL 130
+ C PDV+T+ +LI KP+ ++Y+T++D
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377
Query: 131 CKQGFVDKAKELFLKMK---------------DKN--------------------VKPNV 155
CK+G + +A + ++ M+ D N V+ NV
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNV 437
Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
VTYT++I G C A EA+ LF +M GV PN+ ++N ++ K MD A LL+
Sbjct: 438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 497
Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+ G++PD Y T + G C ++ AK + M+ G
Sbjct: 498 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 22/259 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++ +C F+ M M P V ++N ++ C K L ++ + GL P++ ++S
Sbjct: 314 DDTVCFFEEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK----PDA----------- 120
L++ FCK G + + R P+ T+TSLI CK DA
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432
Query: 121 -----ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
+TY +IDGLC + +A+ELF KM V PN+ +Y ++I GF A + + A
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L E+ +G++P+++ + + LC K++ A +++ M + G++ ++ Y TL+D +
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 236 CLTGRVNHAKELFVSMESM 254
+G L M+ +
Sbjct: 553 FKSGNPTEGLHLLDEMKEL 571
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 18/224 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P F+ + L + + F ++ +FP + + L++ F K+G+
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGK------- 242
Query: 94 LGRILRSCFTPDVVTF-TSLIKV-CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
T DV F +I +P TYN +ID +CK+G V+ A+ LF +MK + +
Sbjct: 243 ---------TDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 293
Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
P+ VTY S+I GF ++ F EM D +P+V+T+N +++ CK GK+
Sbjct: 294 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 353
Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M +G++P+ +Y+TL+D FC G + A + +V M +G
Sbjct: 354 FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 21/236 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V S++ ++ K + + + GL P+ YT++ LI+ CK+G +S F +
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCK 132
+L+ +VVT+T+LI +C P+ +YN +I G K
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+D+A EL ++K + +KP+++ Y + I G C AK + EM + G++ N +
Sbjct: 485 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 544
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
+ +MD K+G E LLD M + + T+ L+DG C V+ A + F
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYF 600
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 22/244 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++S+N ++ K K+ D L L L G+ PDL + I C + ++ VV
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 94 LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
+ + + + +T+L+ + +T+ +IDGLCK
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589
Query: 133 QGFVDKAKELFLKMK-DKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
V KA + F ++ D ++ N +T++I G C N A LF +M+ +G+ P+
Sbjct: 590 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+ +MD K G + EA +L D M + G++ D Y +L+ G ++ A+ M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Query: 252 ESMG 255
G
Sbjct: 710 IGEG 713
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
VC P ++ + L G +++A + F KMK V P + ++ F ++
Sbjct: 187 VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
KR F +M+ G +P V T+N+++D +CK G ++ A L + M G+ PD TYN+++DG
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306
Query: 235 FCLTGRVNHAKELFVSMESMGC 256
F GR++ F M+ M C
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCC 328
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRL-NSTGLFPDLYTH 74
P E L + D M + V +F +++ L KNK + F R+ N GL +
Sbjct: 558 PTEGLHLLDEMKELDIEVT-VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIF 616
Query: 75 SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQG 134
+ +I+ CK +V + ++++ K PD Y +++DG KQG
Sbjct: 617 TAMIDGLCKDNQVEAATTLFEQMVQ--------------KGLVPDRTAYTSLMDGNFKQG 662
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
V +A L KM + +K +++ YTS++ G + N +A+ EM+ +G+ P+ V
Sbjct: 663 NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCI 722
Query: 195 VIMDELCKNGKMDEASSLLDLMIQH 219
++ + + G +DEA L +++H
Sbjct: 723 SVLKKHYELGCIDEAVELQSYLMKH 747
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 25/251 (9%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
LR+ PSP +F I+ A D + LF ++ G F DL + + +++ CK R
Sbjct: 120 LRIGPSP---KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNT 125
V + + R LR F+ D VT+ ++ + P+ TYNT
Sbjct: 177 VEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNT 235
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
++ G + G + A E FL+MK ++ + +VVTYT+V+ GF A + A+ +F EM+ +G
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 295
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
V P+V T+N ++ LCK ++ A + + M++ G P+ TYN L+ G G + +
Sbjct: 296 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 355
Query: 246 ELFVSMESMGC 256
EL ME+ GC
Sbjct: 356 ELMQRMENEGC 366
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 36/280 (12%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSP--PPVSSFNIMLGCLAKNKHYDTVLSL 58
ER S+G+ P++A+ +F L MH ++SFN +L L K+K + L
Sbjct: 134 ERYASAGK-------PDKAVKLF---LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183
Query: 59 FKRLNSTGLFP-DLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-- 115
F+ L G F D T+++++N +C + R VL ++ P++ T+ +++K
Sbjct: 184 FRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241
Query: 116 -------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV 156
C+ D +TY T++ G G + +A+ +F +M + V P+V
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 157 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLM 216
TY ++I+ C ++ A +F EM+ +G +PNV T+NV++ L G+ L+ M
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361
Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
G P+ TYN ++ + V A LF M S C
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDC 401
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++++N ML + F + D+ T++ +++ F G + V
Sbjct: 228 PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNV 287
Query: 94 LGRILRSCFTPDVVTFTSLIKV-CK--------------------PDAITYNTIIDGLCK 132
++R P V T+ ++I+V CK P+ TYN +I GL
Sbjct: 288 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 347
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G + +EL +M+++ +PN TY +IR + ++ +A LF +M PN+ T
Sbjct: 348 AGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDT 407
Query: 193 FNVIMDELCKNGKMDE---ASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
+N+++ + + ++ A LL M++ G P FT+N +L+G LTG AKE+
Sbjct: 408 YNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEIL 466
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++N++L K L + K + G+ P+L T++ ++ F + G++ H + +
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256
Query: 98 LRSCFTPDVVTFTSL---------IKVCK------------PDAITYNTIIDGLCKQGFV 136
+ DVVT+T++ IK + P TYN +I LCK+ V
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNV 316
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+ A +F +M + +PNV TY +IRG +A +++ + L M ++G +PN T+N++
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMM 376
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
+ + ++++A L + M P+ TYN L+ G + R
Sbjct: 377 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 119 DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
DA +++ ID + L +M+ + P+ T+ V + A ++A +LF
Sbjct: 90 DASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLF 149
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL-------------------------- 212
+ M + G ++ +FN I+D LCK+ ++++A L
Sbjct: 150 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIK 209
Query: 213 --------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
L M++ G+ P+ TYNT+L GF G++ HA E F+ M+ C
Sbjct: 210 RTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++N+M+ ++ + L LF+++ S P+L T++ILI+ R S VV
Sbjct: 368 PNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR-SEDMVV 426
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKN 150
G++L + P T+N +++GL G AKE+ L+++ K+
Sbjct: 427 AGKLLLEMVERGFI----------PRKFTFNRVLNGLLLTGNQAFAKEI-LRLQSKS 472
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 22/252 (8%)
Query: 26 MLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMG 85
++ P P ++ N++ G L KN + ++ + GL PD YT++ LI +CK G
Sbjct: 277 LIEQGPKPDVITYNNLIYG-LCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335
Query: 86 RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYN 124
V ++G + + F PD T+ SLI K KP+ I YN
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395
Query: 125 TIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 184
T+I GL QG + +A +L +M +K + P V T+ ++ G C ++A L M+ +
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455
Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
G P++ TFN+++ KM+ A +LD+M+ +GV PD +TYN+LL+G C T +
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515
Query: 245 KELFVSMESMGC 256
E + +M GC
Sbjct: 516 METYKTMVEKGC 527
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 15/237 (6%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N AL +F+ L P V +N ++ L+ L ++ GL P++ T +I
Sbjct: 373 NRALALFNEALG-KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
L+N CKMG VS ++ ++ + PD+ TF N +I G Q +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF--------------NILIHGYSTQLKM 477
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+ A E+ M D V P+V TY S++ G C + + + + M+++G PN+ TFN++
Sbjct: 478 ENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNIL 537
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 253
++ LC+ K+DEA LL+ M V PDA T+ TL+DGFC G ++ A LF ME
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 22/252 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
EA+ +F+ M + P V S+N ++ L + ++D ++ R+ G+ PD+Y+ +I
Sbjct: 93 QEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAI--------------- 121
+ FCK R +L + +VV + +++ +
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211
Query: 122 ------TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
T+N ++ LCK+G V + ++L K+ + V PN+ TY I+G C + + A
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
R+ +++QG +P+V+T+N ++ LCKN K EA L M+ G+ PD++TYNTL+ G+
Sbjct: 272 RMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331
Query: 236 CLTGRVNHAKEL 247
C G V A+ +
Sbjct: 332 CKGGMVQLAERI 343
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 16/248 (6%)
Query: 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
G T + AL I D ML + P V ++N +L L K ++ V+ +K + G
Sbjct: 470 GYSTQLKMENALEILDVMLD-NGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIID 128
P+L+T +IL+ C+ ++ +L + K PDA+T+ T+ID
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKN--------------KSVNPDAVTFGTLID 574
Query: 129 GLCKQGFVDKAKELFLKMKDK-NVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 187
G CK G +D A LF KM++ V + TY +I F + A++LF EM+D+ +
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634
Query: 188 PNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 247
P+ T+ +++D CK G ++ L M+++G P T +++ C+ RV A +
Sbjct: 635 PDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGI 694
Query: 248 FVSMESMG 255
M G
Sbjct: 695 IHRMVQKG 702
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 122 TYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVV--TYTSVIRGFCYANDWNEAKRLFI 179
TY ++I+ L G + +E+ + M++ NV +++ Y ++ + EA +F
Sbjct: 42 TYRSVIEKLGYYGKFEAMEEVLVDMRE-NVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFE 100
Query: 180 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTG 239
M +P V ++N IM L +G D+A + M G+ PD +++ + FC T
Sbjct: 101 RMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTS 160
Query: 240 RVNHAKELFVSMESMGC 256
R + A L +M S GC
Sbjct: 161 RPHAALRLLNNMSSQGC 177
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
++G V +A +F +M + +P V +Y +++ + +++A ++++ M D+G+ P+V
Sbjct: 88 RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
+F + M CK + A LL+ M G + Y T++ GF ELF M
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207
Query: 252 ESMG 255
+ G
Sbjct: 208 LASG 211
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 28 RMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRV 87
R H P+ +L + K T+ + + G ++Y +IL+N FCK G +
Sbjct: 197 RKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNI 256
Query: 88 SHGFVVLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTI 126
S V I + P VV+F +LI CK PD TY+ +
Sbjct: 257 SDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSAL 316
Query: 127 IDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 186
I+ LCK+ +D A LF +M + + PN V +T++I G + + K + +M+ +G+
Sbjct: 317 INALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGL 376
Query: 187 QPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 246
QP++V +N +++ CKNG + A +++D MI+ G+RPD TY TL+DGFC G V A E
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALE 436
Query: 247 LFVSMESMG 255
+ M+ G
Sbjct: 437 IRKEMDQNG 445
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 27/269 (10%)
Query: 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
EG+I+ +A +FD + + P V SFN ++ K + D L ++ +
Sbjct: 253 EGNIS-----DAQKVFDEITK-RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306
Query: 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
PD++T+S LIN CK ++ + + + P+ V FT+LI
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKE 366
Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
K +PD + YNT+++G CK G + A+ + M + ++P+ +TYT++I GFC
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC 426
Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
D A + EM G++ + V F+ ++ +CK G++ +A L M++ G++PD
Sbjct: 427 RGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDV 486
Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
TY ++D FC G +L M+S G
Sbjct: 487 TYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 19 ALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 78
A +FD M + P V F ++ ++N D + ++++ S GL PD+ ++ L+
Sbjct: 329 AHGLFDEMCKRGLIPNDVI-FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLV 387
Query: 79 NCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKP------------------- 118
N FCK G + ++ ++R PD +T+T+LI C+
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIE 447
Query: 119 -DAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
D + ++ ++ G+CK+G V A+ +M +KP+ VTYT ++ FC D +L
Sbjct: 448 LDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKL 507
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
EM G P+VVT+NV+++ LCK G+M A LLD M+ GV PD TYNTLL+G
Sbjct: 508 LKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 126/261 (48%), Gaps = 27/261 (10%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
NEAL + + M M P + +++LG L K + + R+ G PD T+
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327
Query: 77 LINCFCKMGRVS---------------------HGFVVLGRILRS-CFTPDVVTFTSLIK 114
L+N CK+GRV HGFV GR+ + D+VT ++
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV- 386
Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
PD TYN++I G K+G V A E+ M++K KPNV +YT ++ GFC +EA
Sbjct: 387 ---PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDG 234
+ EM G++PN V FN ++ CK ++ EA + M + G +PD +T+N+L+ G
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Query: 235 FCLTGRVNHAKELFVSMESMG 255
C + HA L M S G
Sbjct: 504 LCEVDEIKHALWLLRDMISEG 524
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 21/264 (7%)
Query: 9 GDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF 68
G +T ++A + M+ + P V ++N ++ K L + + + G
Sbjct: 362 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421
Query: 69 PDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI--------------- 113
P++Y+++IL++ FCK+G++ + VL + P+ V F LI
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481
Query: 114 ------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCY 167
K CKPD T+N++I GLC+ + A L M + V N VTY ++I F
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541
Query: 168 ANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
+ EA++L EM+ QG + +T+N ++ LC+ G++D+A SL + M++ G P +
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS 601
Query: 228 YNTLLDGFCLTGRVNHAKELFVSM 251
N L++G C +G V A E M
Sbjct: 602 CNILINGLCRSGMVEEAVEFQKEM 625
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 21/250 (8%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
+R P V S+ I++ K D ++ +++ GL P+ + LI+ FCK R
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLIK-VCKPDAI--------------------TYNT 125
+ + + R PDV TF SLI +C+ D I TYNT
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
+I+ ++G + +A++L +M + + +TY S+I+G C A + ++A+ LF +M+ G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
P+ ++ N++++ LC++G ++EA M+ G PD T+N+L++G C GR+
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 246 ELFVSMESMG 255
+F +++ G
Sbjct: 655 TMFRKLQAEG 664
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 21/232 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P FN ++ K + +F+ + G PD+YT + LI+ C++ + H +
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516
Query: 94 LGRILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCK 132
L ++ + VT+ +LI D ITYN++I GLC+
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G VDKA+ LF KM P+ ++ +I G C + EA EM+ +G P++VT
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
FN +++ LC+ G++++ ++ + G+ PD T+NTL+ C G V A
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 18/245 (7%)
Query: 30 HPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSH 89
H P + ++ L+K + L L + + G PD T + +I CK R++
Sbjct: 246 HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINE 305
Query: 90 GFVVLGRILRSCFTPDVVTFTSLI-----------------KVCKPDAITYNTIIDGLCK 132
++ R+L F PD +T+ L+ ++ KP+ + +NT+I G
Sbjct: 306 AAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVT 365
Query: 133 QGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
G +D AK + M + P+V TY S+I G+ A + +M ++G +PNV
Sbjct: 366 HGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVY 425
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
++ +++D CK GK+DEA ++L+ M G++P+ +N L+ FC R+ A E+F M
Sbjct: 426 SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 485
Query: 252 ESMGC 256
GC
Sbjct: 486 PRKGC 490
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA+ IF M R P V +FN ++ L + L L + + S G+ + T++ L
Sbjct: 477 EAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------- 117
IN F + G + ++ ++ D +T+ SLIK +C+
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
P I+ N +I+GLC+ G V++A E +M + P++VT+ S+I G C A +
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
+F ++ +G+ P+ VTFN +M LCK G + +A LLD I+ G P+ T++ LL
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 26/263 (9%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
P + + M ++ P S+N++L L + ++F + S + P L+T
Sbjct: 162 PGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFG 221
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-------------------- 115
+++ FC + + +L + + P+ V + +LI
Sbjct: 222 VVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 281
Query: 116 -CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEA 174
C PDA T+N +I GLCK +++A ++ +M + P+ +TY ++ G C + A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341
Query: 175 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL-DLMIQHGVRPDAFTYNTLLD 233
K LF + +P +V FN ++ +G++D+A ++L D++ +G+ PD TYN+L+
Sbjct: 342 KDLFYRI----PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397
Query: 234 GFCLTGRVNHAKELFVSMESMGC 256
G+ G V A E+ M + GC
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGC 420
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 32 SPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGF 91
SP ++N ++ L + D SLF+++ G P + +ILIN C+ G V
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 92 VVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
++ TPD+VTF N++I+GLC+ G ++ +F K++ + +
Sbjct: 620 EFQKEMVLRGSTPDIVTF--------------NSLINGLCRAGRIEDGLTMFRKLQAEGI 665
Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 208
P+ VT+ +++ C +A L E ++ G PN T+++++ + +D
Sbjct: 666 PPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 132 KQGFVDKAKELFLKMKD-KNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNV 190
K GF + L L+M++ + +P +Y V+ N A +F +M+ + + P +
Sbjct: 158 KAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTL 217
Query: 191 VTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVS 250
TF V+M C ++D A SLL M +HG P++ Y TL+ RVN A +L
Sbjct: 218 FTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277
Query: 251 MESMGC 256
M MGC
Sbjct: 278 MFLMGC 283
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 23 FDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFC 82
F + + S P + +FN ++ L + + L++F++L + G+ PD T + L++ C
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
Query: 83 KMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPD 119
K G V ++L + F P+ T++ L++ P
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQ 717
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 130/236 (55%), Gaps = 19/236 (8%)
Query: 22 IFDYMLRMHPSPPPVSSFNIMLG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN 79
+F ML SP V ++NI++ C A N D L+LF ++ + G P++ T++ LI+
Sbjct: 192 VFKEMLESQVSPN-VFTYNILIRGFCFAGN--IDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 80 CFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKA 139
+CK+ ++ GF ++LRS +K +P+ I+YN +I+GLC++G + +
Sbjct: 249 GYCKLRKIDDGF----KLLRSM----------ALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 140 KELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 199
+ +M + + VTY ++I+G+C ++++A + EM+ G+ P+V+T+ ++
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Query: 200 LCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
+CK G M+ A LD M G+ P+ TY TL+DGF G +N A + M G
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 133/256 (51%), Gaps = 22/256 (8%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++AL + MLR H P V ++ ++ + K + + + ++ GL P+ T++
Sbjct: 327 HQALVMHAEMLR-HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
L++ F + G ++ + VL + + F+P VVT+ +LI K
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
PD ++Y+T++ G C+ VD+A + +M +K +KP+ +TY+S+I+GFC EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
L+ EM+ G+ P+ T+ +++ C G +++A L + M++ GV PD TY+ L++G
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Query: 236 CLTGRVNHAKELFVSM 251
R AK L + +
Sbjct: 566 NKQSRTREAKRLLLKL 581
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 37/271 (13%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N A+ D M R+ P ++ ++ ++ + + + + +N G P + T++
Sbjct: 362 NRAMEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KV 115
LIN C G++ VL + +PDVV++++++ K
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 116 CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
KPD ITY+++I G C+Q +A +L+ +M + P+ TYT++I +C D +A
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD-- 233
+L EM+++GV P+VVT++V+++ L K + EA LL + P TY+TL++
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600
Query: 234 -------------GFCLTGRVNHAKELFVSM 251
GFC+ G + A ++F SM
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESM 631
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 15/220 (6%)
Query: 37 SSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR-VSHGFVVLG 95
S F++++ ++ D LS+ + G P + +++ +++ + R +S V
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 96 RILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNV 155
+L S +P+V TYN +I G C G +D A LF KM+ K PNV
Sbjct: 195 EMLESQVSPNV--------------FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV 240
Query: 156 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDL 215
VTY ++I G+C ++ +L M +G++PN++++NV+++ LC+ G+M E S +L
Sbjct: 241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE 300
Query: 216 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
M + G D TYNTL+ G+C G + A + M G
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 36/252 (14%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V S++ +L ++ D L + + + G+ PD T+S LI FC+ R +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 94 LGRILRSCFTPDVVTFTSLI---------------------KVCKPDAITYNTIIDGLCK 132
+LR PD T+T+LI K PD +TY+ +I+GL K
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTY---------------TSVIRGFCYANDWNEAKRL 177
Q +AK L LK+ + P+ VTY S+I+GFC EA ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
F M+ + +P+ +N+++ C+ G + +A +L M++ G T L+
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Query: 238 TGRVNHAKELFV 249
G+VN + V
Sbjct: 688 EGKVNELNSVIV 699
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 2/197 (1%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EA +++ MLR+ PP ++ ++ + L L + G+ PD+ T+S+L
Sbjct: 503 EACDLYEEMLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVL 561
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKP-DAITYNTIIDGLCKQGFV 136
IN K R +L ++ P VT+ +LI+ C + + ++I G C +G +
Sbjct: 562 INGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
+A ++F M KN KP+ Y +I G C A D +A L+ EM+ G + VT +
Sbjct: 622 TEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIAL 681
Query: 197 MDELCKNGKMDEASSLL 213
+ L K GK++E +S++
Sbjct: 682 VKALHKEGKVNELNSVI 698
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 115 VCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYAN-DWNE 173
+C + ++ ++ + +DKA + + P V++Y +V+ + + +
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF 188
Query: 174 AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
A+ +F EM++ V PNV T+N+++ C G +D A +L D M G P+ TYNTL+D
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 234 GFCLTGRVNHAKELFVSMESMG 255
G+C +++ +L SM G
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKG 270
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 184 QGVQPNVVTFNVIMDELCKNGK-MDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
G P V+++N ++D ++ + + A ++ M++ V P+ FTYN L+ GFC G ++
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222
Query: 243 HAKELFVSMESMGC 256
A LF ME+ GC
Sbjct: 223 VALTLFDKMETKGC 236
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 25/257 (9%)
Query: 22 IFDYMLRMHPSPPPVSSFNIM-LGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 80
+FD M + P SS+ +M +GC K + L + G PD T ++++
Sbjct: 204 VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR-GFIPDNATCTLILTA 261
Query: 81 FCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VC--------------------KPD 119
C+ G V+ +++ F P+++ FTSLI +C KP+
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPN 321
Query: 120 AITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLF 178
T+ +IDGLCK+G+ +KA LFLK+ + KPNV TYTS+I G+C + N A+ LF
Sbjct: 322 VYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLF 381
Query: 179 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLT 238
M +QG+ PNV T+ +++ CK G A L++LM G P+ +TYN +D C
Sbjct: 382 SRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKK 441
Query: 239 GRVNHAKELFVSMESMG 255
R A EL S G
Sbjct: 442 SRAPEAYELLNKAFSCG 458
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 22/244 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P ++ ++L L +N + + F+++ G P+L + LI+ CK G + F +
Sbjct: 250 PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 309
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCK---------------------PDAITYNTIIDGLC 131
L ++R+ + P+V T T+LI +CK P+ TY ++I G C
Sbjct: 310 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 369
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
K+ +++A+ LF +MK++ + PNV TYT++I G C A + A L M D+G PN+
Sbjct: 370 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 429
Query: 192 TFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 251
T+N +D LCK + EA LL+ G+ D TY L+ C +N A F M
Sbjct: 430 TYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM 489
Query: 252 ESMG 255
G
Sbjct: 490 NKTG 493
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 21/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
+A +F ++R P V ++ M+G K + LF R+ GLFP++ T++ L
Sbjct: 340 KAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 399
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
IN CK G + ++ + F P++ T+ + I +CK
Sbjct: 400 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGL 459
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
D +TY +I CKQ +++A F +M + ++ +I FC E++R
Sbjct: 460 EADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESER 519
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
LF ++ G+ P T+ ++ CK G +D A M +HG PD+FTY +L+ G C
Sbjct: 520 LFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 579
Query: 237 LTGRVNHAKELFVSMESMG 255
V+ A +L+ +M G
Sbjct: 580 KKSMVDEACKLYEAMIDRG 598
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 38 SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRI 97
++ I++ K + L+ F R+N TG D+ ++ILI FC+ ++ R+
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKES----ERL 520
Query: 98 LRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVT 157
+ +V LI P TY ++I CK+G +D A + F MK P+ T
Sbjct: 521 FQ------LVVSLGLI----PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFT 570
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD-LM 216
Y S+I G C + +EA +L+ M+D+G+ P VT + E CK A LL+ L
Sbjct: 571 YGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD 630
Query: 217 IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
+ +R T TL+ C +V A F
Sbjct: 631 KKLWIR----TVRTLVRKLCSEKKVGVAALFF 658
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%)
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
P +IT N +++ + G ++ A+ +F +M + V P+ +Y ++ G EA R
Sbjct: 180 PSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRW 239
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
M+ +G P+ T +I+ LC+NG ++ A MI G +P+ + +L+DG C
Sbjct: 240 LTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCK 299
Query: 238 TGRVNHAKELFVSMESMG 255
G + A E+ M G
Sbjct: 300 KGSIKQAFEMLEEMVRNG 317
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 123 YNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMM 182
Y D L G + KA E+ M +R F NEA + ++M
Sbjct: 130 YLVTADSLLANGNLQKAHEVMRCM---------------LRNFSEIGRLNEAVGMVMDMQ 174
Query: 183 DQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 242
+QG+ P+ +T N +++ + G ++ A ++ D M GV PD+ +Y ++ G G++
Sbjct: 175 NQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQ 234
Query: 243 HAKELFVSMESMG 255
A M G
Sbjct: 235 EADRWLTGMIQRG 247
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 21/244 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + + +++ L + + K++ GL +Y+++ +I+C CK R+ + +
Sbjct: 388 PGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMF 447
Query: 94 LGRILRSCFTPDVVTFTS---------------------LIKVCKPDAITYNTIIDGLCK 132
L + +P++VTF + L+ KPD IT++ II+ LC+
Sbjct: 448 LTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCR 507
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
+ A + F +M + ++PN +TY +IR C D + + +LF +M + G+ P++
Sbjct: 508 AKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYA 567
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
+N + CK K+ +A LL M++ G++PD FTY+TL+ +GR + A+E+F S+E
Sbjct: 568 YNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIE 627
Query: 253 SMGC 256
GC
Sbjct: 628 RHGC 631
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 21/213 (9%)
Query: 36 VSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLG 95
V S+N ++ CL K + + + G+ P+L T + ++ + G V VL
Sbjct: 425 VYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLE 484
Query: 96 RILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLCKQG 134
++L F PDV+TF+ +I +C+ P+ ITYN +I C G
Sbjct: 485 KLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTG 544
Query: 135 FVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFN 194
D++ +LF KMK+ + P++ Y + I+ FC +A+ L M+ G++P+ T++
Sbjct: 545 DTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYS 604
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFT 227
++ L ++G+ EA + + +HG PD++T
Sbjct: 605 TLIKALSESGRESEAREMFSSIERHGCVPDSYT 637
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%)
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
+I + G ++F ++ +KP+ Y +VI +N + A F +M G
Sbjct: 151 LIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG 210
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
+P+ T+N+++ +CK G +DEA L+ M Q G RP+ FTY L+DGF + GRV+ A
Sbjct: 211 CKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEA 269
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 33/273 (12%)
Query: 1 ERLKSSGEGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKH-----YDTV 55
E LK + + PNEA I ++ + PP +F +++G + K+ + YD V
Sbjct: 268 EALKQLEMMRVRKLNPNEA-TIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAV 326
Query: 56 L-------------SLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCF 102
L +++ G PD T + ++C K H V RI
Sbjct: 327 LYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLK----GHDLVETCRIFDGFV 382
Query: 103 TPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVI 162
+ V KP Y ++ L + +M + +V +Y +VI
Sbjct: 383 SRGV----------KPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVI 432
Query: 163 RGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVR 222
C A A EM D+G+ PN+VTFN + G + + +L+ ++ HG +
Sbjct: 433 DCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFK 492
Query: 223 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
PD T++ +++ C + A + F M G
Sbjct: 493 PDVITFSLIINCLCRAKEIKDAFDCFKEMLEWG 525
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 95 GRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPN 154
GR+ + + DV S + + KP YN +ID L K +D A F +M+ KP+
Sbjct: 156 GRLGLAKYCNDVFAQISFLGM-KPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPD 214
Query: 155 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLD 214
TY +I G C +EA RL +M +G +PNV T+ +++D G++DEA L+
Sbjct: 215 RFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLE 274
Query: 215 LMIQHGVRPDAFTYNTLLDG 234
+M + P+ T T + G
Sbjct: 275 MMRVRKLNPNEATIRTFVHG 294
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
L +H P V +F++++ CL + K FK + G+ P+ T++ILI C G
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGD 545
Query: 87 VSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM 146
+ ++ + +PD+ YN I CK V KA+EL M
Sbjct: 546 TDRSVKLFAKMKENGLSPDLY--------------AYNATIQSFCKMRKVKKAEELLKTM 591
Query: 147 KDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD-ELCKNGK 205
+KP+ TY+++I+ + +EA+ +F + G P+ T ++ + +L K+G
Sbjct: 592 LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGL 651
Query: 206 MDEASS 211
E S
Sbjct: 652 SRETVS 657
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 21/250 (8%)
Query: 27 LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGR 86
+R P ++NI++ + K D + L K++ G P+++T++ILI+ F GR
Sbjct: 206 MRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGR 265
Query: 87 VSHGFVVLGRILRSCFTPD---VVTFTSLIKVCKP------------------DAITYNT 125
V L + P+ + TF I C P + Y+
Sbjct: 266 VDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDA 325
Query: 126 IIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG 185
++ L + + K+ ++ P+ T+ + + +D E R+F + +G
Sbjct: 326 VLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRG 385
Query: 186 VQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 245
V+P + V++ L + E L M G+ ++YN ++D C R+ +A
Sbjct: 386 VKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAA 445
Query: 246 ELFVSMESMG 255
M+ G
Sbjct: 446 MFLTEMQDRG 455
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
Y ND +F ++ G++P+ +N ++D L K+ +D A M G +PD F
Sbjct: 163 YCND------VFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRF 216
Query: 227 TYNTLLDGFCLTGRVNHAKELFVSMESMG 255
TYN L+ G C G V+ A L ME G
Sbjct: 217 TYNILIHGVCKKGVVDEAIRLVKQMEQEG 245
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 133/258 (51%), Gaps = 25/258 (9%)
Query: 22 IFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCF 81
++ M+R P V +FN+++ L K + + + + G P++ +++ LI+ +
Sbjct: 210 VYKEMIR-RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268
Query: 82 CKMG---RVSHGFVVLGRILRSCFTPDVVTFTSLI---------------------KVCK 117
CK+G ++ VL ++ + +P++ TF LI + K
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
P+ I+YN++I+GLC G + +A + KM V+PN++TY ++I GFC + EA +
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDM 388
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
F + QG P +N+++D CK GK+D+ +L + M + G+ PD TYN L+ G C
Sbjct: 389 FGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448
Query: 238 TGRVNHAKELFVSMESMG 255
G + AK+LF + S G
Sbjct: 449 NGNIEAAKKLFDQLTSKG 466
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 18/219 (8%)
Query: 41 IMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRS 100
+M+ L +N+ D V ++K + + P+++T +++IN CK G+++ V+
Sbjct: 194 LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM------ 246
Query: 101 CFTPDVVTFTSLIKVCKPDAITYNTIIDGLCK---QGFVDKAKELFLKMKDKNVKPNVVT 157
D+ + C P+ ++YNT+IDG CK G + KA + +M + +V PN+ T
Sbjct: 247 ---EDMKVYG-----CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTT 298
Query: 158 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMI 217
+ +I GF ++ + ++F EM+DQ V+PNV+++N +++ LC GK+ EA S+ D M+
Sbjct: 299 FNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMV 358
Query: 218 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
GV+P+ TYN L++GFC + A ++F S++ G
Sbjct: 359 SAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 126/240 (52%), Gaps = 22/240 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P +++FNI++ K+ + + +FK + + P++ +++ LIN C G++S +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISM 353
Query: 94 LGRILRSCFTPDVVTFTSLIK-VCKPDAIT--------------------YNTIIDGLCK 132
+++ + P+++T+ +LI CK D + YN +ID CK
Sbjct: 354 RDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK 413
Query: 133 QGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVT 192
G +D L +M+ + + P+V TY +I G C + AK+LF ++ +G+ P++VT
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVT 472
Query: 193 FNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 252
F+++M+ C+ G+ +A+ LL M + G++P TYN ++ G+C G + A + ME
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQME 532
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 119/233 (51%), Gaps = 22/233 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ + D M+ P ++ +N ++ KN L +F + G P +++
Sbjct: 348 SEAISMRDKMVSAGVQPNLIT-YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK-VCK------------------ 117
LI+ +CK+G++ GF + + R PDV T+ LI +C+
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD +T++ +++G C++G KA L +M +KP +TY V++G+C + A
Sbjct: 467 LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN 526
Query: 177 LFIEM-MDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTY 228
+ +M ++ ++ NV ++NV++ + GK+++A+ LL+ M++ G+ P+ TY
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P V ++N ++ L +N + + LF +L S GL PDL T IL+ +C+ G ++
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKM-KDKNVK 152
L + + KP +TYN ++ G CK+G + A + +M K++ ++
Sbjct: 493 LKEMSKMGL--------------KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLR 538
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 204
NV +Y +++G+ +A L EM+++G+ PN +T+ ++ +E+ G
Sbjct: 539 MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 25/206 (12%)
Query: 57 SLFKRLNSTGLFPDL----YTHSI--------------LINCFCKMGRVSHGFVVLGRIL 98
LF++L S+ L PDL Y+ + L++ R S L +
Sbjct: 69 ELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFV 128
Query: 99 RSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAK-----ELFLKMKDKNVKP 153
R+ V + I +C D + N+II + + + ++ E F + K
Sbjct: 129 RNGSDHQVHSIFHAISMC--DNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKL 186
Query: 154 NVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLL 213
+ ++ ++ N + + ++ EM+ + +QPNV TFNV+++ LCK GKM++A ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 214 DLMIQHGVRPDAFTYNTLLDGFCLTG 239
+ M +G P+ +YNTL+DG+C G
Sbjct: 247 EDMKVYGCSPNVVSYNTLIDGYCKLG 272
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 185 GVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 244
G + + ++ +M L K + + + MI+ ++P+ FT+N +++ C TG++N A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242
Query: 245 KELFVSMESMGC 256
+++ M+ GC
Sbjct: 243 RDVMEDMKVYGC 254
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 26/265 (9%)
Query: 17 NEALCIFDYM----LRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 72
+ L +DY+ + M+ SP +S FN+++ L K + D + +F+ + PD Y
Sbjct: 165 HRGLEFYDYVVNSNMNMNISPNGLS-FNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGY 223
Query: 73 THSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI------------------- 113
T+ L++ CK R+ ++L + +P V + LI
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283
Query: 114 --KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
K C P+ +TYNT+I GLC +G +DKA L +M PN VTY ++I G
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343
Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
+A RL M ++G N ++V++ L K GK +EA SL M + G +P+ Y+ L
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403
Query: 232 LDGFCLTGRVNHAKELFVSMESMGC 256
+DG C G+ N AKE+ M + GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGC 428
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 15/240 (6%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
+EA+ + D M SP PV +N+++ L K V L + G P+ T++
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFV 136
LI+ C G++ +L R++ S C P+ +TY T+I+GL KQ
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSS--------------KCIPNDVTYGTLINGLVKQRRA 343
Query: 137 DKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVI 196
A L M+++ N Y+ +I G EA L+ +M ++G +PN+V ++V+
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403
Query: 197 MDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
+D LC+ GK +EA +L+ MI G P+A+TY++L+ GF TG A +++ M+ GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 24/219 (10%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
+++++ L K + +SL++++ G P++ +S+L++ C+ G+ + +L R++
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424
Query: 99 RSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGFVD 137
S P+ T++SL+K C + Y+ +IDGLC G V
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPNVVTFN 194
+A ++ KM +KP+ V Y+S+I+G C + A +L+ EM+ Q QP+VVT+N
Sbjct: 485 EAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYN 544
Query: 195 VIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLD 233
+++D LC + A LL+ M+ G PD T NT L+
Sbjct: 545 ILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLN 583
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 27/265 (10%)
Query: 8 EGDITTITPNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGL 67
+GD+T +T + D M P V+ +N ++ L D +SL +R+ S+
Sbjct: 270 KGDLTRVTK-----LVDNMFLKGCVPNEVT-YNTLIHGLCLKGKLDKAVSLLERMVSSKC 323
Query: 68 FPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-------------- 113
P+ T+ LIN K R + +L + + + ++ LI
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMS 383
Query: 114 -------KVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFC 166
K CKP+ + Y+ ++DGLC++G ++AKE+ +M PN TY+S+++GF
Sbjct: 384 LWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFF 443
Query: 167 YANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAF 226
EA +++ EM G N ++V++D LC G++ EA + M+ G++PD
Sbjct: 444 KTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTV 503
Query: 227 TYNTLLDGFCLTGRVNHAKELFVSM 251
Y++++ G C G ++ A +L+ M
Sbjct: 504 AYSSIIKGLCGIGSMDAALKLYHEM 528
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 39/253 (15%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
PNEA I + M+ P + ++M G K + + ++K ++ TG + + +S
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKG-FFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIK------------------VCK 117
+LI+ C +GRV +V ++L PD V ++S+IK +C+
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQ 531
Query: 118 ------PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDW 171
PD +TYN ++DGLC Q + +A +L M D+ P+V+T + + ++
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS 591
Query: 172 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTL 231
+ R F+E + + L K ++ A +++++M+ + P T+ +
Sbjct: 592 CDKGRSFLEEL--------------VVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMI 637
Query: 232 LDGFCLTGRVNHA 244
+ C ++N A
Sbjct: 638 VREICKPKKINAA 650
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 21/239 (8%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
+N ++ K + +L ++ G PDL T+++L+N + + V+ ++
Sbjct: 223 YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMV 282
Query: 99 RSCFTPDVVTFTSLIK----VCKPD-----------------AITYNTIIDGLCKQGFVD 137
RS D ++ L+K V PD ++Y+T+I+ C+
Sbjct: 283 RSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTR 342
Query: 138 KAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIM 197
KA LF +M+ K + NVVTYTS+I+ F + + AK+L +M + G+ P+ + + I+
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTIL 402
Query: 198 DELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC 256
D LCK+G +D+A + + MI+H + PDA +YN+L+ G C +GRV A +LF M+ C
Sbjct: 403 DHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 34 PPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVV 93
P + +FN+ L L + + F + G PD+ +++ILIN + G+V+ +
Sbjct: 112 PDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171
Query: 94 LGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLK-MKDKNVK 152
++RS +PD K C ++ GLC VD A E+ + +K VK
Sbjct: 172 WNAMIRSGVSPDN-------KACA-------ALVVGLCHARKVDLAYEMVAEEIKSARVK 217
Query: 153 PNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSL 212
+ V Y ++I GFC A +A+ L M G +P++VT+NV+++ N + A +
Sbjct: 218 LSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGV 277
Query: 213 LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 243
+ M++ G++ DA++YN LL C RV+H
Sbjct: 278 MAEMVRSGIQLDAYSYNQLLKRHC---RVSH 305
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 23/221 (10%)
Query: 38 SFNIMLGCLAKNKHYDTVLS-LFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGR 96
S+N +L + H D + + K + G F D+ ++S LI FC+ + +
Sbjct: 292 SYNQLLKRHCRVSHPDKCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEE 350
Query: 97 ILRSCFTPDVVTFTSLIKV---------------------CKPDAITYNTIIDGLCKQGF 135
+ + +VVT+TSLIK PD I Y TI+D LCK G
Sbjct: 351 MRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGN 410
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
VDKA +F M + + P+ ++Y S+I G C + EA +LF +M + P+ +TF
Sbjct: 411 VDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKF 470
Query: 196 IMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
I+ L + K+ A + D M+ G D +TL+ C
Sbjct: 471 IIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 17 NEALCIFDYMLRMHPSPPPVS-SFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS 75
+ A+ +FD M H S S +N +G L + ++ +++ + G +T+S
Sbjct: 26 DNAVQVFDEM--RHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYS 83
Query: 76 ILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGF 135
I+ CK+ + +L + F PD+ F N +D LC++
Sbjct: 84 RFISGLCKVKKFDLIDALLSDMETLGFIPDIWAF--------------NVYLDLLCRENK 129
Query: 136 VDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNV 195
V A + F M + +P+VV+YT +I G A +A ++ M+ GV P+
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAA 189
Query: 196 IMDELCKNGKMDEASSLLDLMIQHG-VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 254
++ LC K+D A ++ I+ V+ YN L+ GFC GR+ A+ L M +
Sbjct: 190 LVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKI 249
Query: 255 GC 256
GC
Sbjct: 250 GC 251
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%)
Query: 121 ITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIE 180
+ Y + I L K G +D A ++F +M+ + + Y I + + A+ ++ +
Sbjct: 10 LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWD 69
Query: 181 MMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 240
M G T++ + LCK K D +LL M G PD + +N LD C +
Sbjct: 70 MKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENK 129
Query: 241 VNHAKELFVSMESMG 255
V A + F M G
Sbjct: 130 VGFAVQTFFCMVQRG 144
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
++A +F+ M+ H P S+N ++ L ++ + LF+ + PD T
Sbjct: 412 DKAYGVFNDMIE-HEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKF 470
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV 115
+I + ++S + V +++ FT D +LIK
Sbjct: 471 IIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 23/241 (9%)
Query: 17 NEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 76
N+++ +F+ +R P + + ++L L K + DTV +FK++ G+ +++ +++
Sbjct: 150 NDSIVVFE-QIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNV 208
Query: 77 LINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKV-CK------------------ 117
L++ K G +L + PD+ T+ +LI V CK
Sbjct: 209 LVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSG 268
Query: 118 --PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAK 175
P+ +TYN+ I G ++G + +A LF ++KD +V N VTYT++I G+C ND +EA
Sbjct: 269 VAPNIVTYNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTLIDGYCRMNDIDEAL 327
Query: 176 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGF 235
RL M +G P VVT+N I+ +LC++G++ EA+ LL M + PD T NTL++ +
Sbjct: 328 RLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAY 387
Query: 236 C 236
C
Sbjct: 388 C 388
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 20/237 (8%)
Query: 39 FNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRIL 98
+N+++ +K+ + L + G+FPD++T++ LI+ +CK V R+
Sbjct: 206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265
Query: 99 RSCFTPDVVTFTSLI----------------KVCKPDA----ITYNTIIDGLCKQGFVDK 138
RS P++VT+ S I + K D +TY T+IDG C+ +D+
Sbjct: 266 RSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDIDE 325
Query: 139 AKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 198
A L M+ + P VVTY S++R C EA RL EM + ++P+ +T N +++
Sbjct: 326 ALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLIN 385
Query: 199 ELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 255
CK M A + MI+ G++ D ++Y L+ GFC + +AKE SM G
Sbjct: 386 AYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKG 442
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 23/259 (8%)
Query: 18 EALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL 77
EAL + D M R +P V+ +N + ++ LF+ + + + T++ L
Sbjct: 256 EALSVQDRMERSGVAPNIVT-YNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTL 313
Query: 78 INCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLI-KVCK------------------- 117
I+ +C+M + + + F+P VVT+ S++ K+C+
Sbjct: 314 IDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKI 373
Query: 118 -PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKR 176
PD IT NT+I+ CK + A ++ KM + +K ++ +Y ++I GFC + AK
Sbjct: 374 EPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKE 433
Query: 177 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFC 236
M+++G P T++ ++D K DE + LL+ + G+ D Y L+ C
Sbjct: 434 ELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRIC 493
Query: 237 LTGRVNHAKELFVSMESMG 255
+V++AK LF SME G
Sbjct: 494 KLEQVDYAKVLFESMEKKG 512
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 32/251 (12%)
Query: 16 PNEALCIFDYMLRMHPSPPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLF------- 68
P+ + F + + S + S M+ L K+KH+ T L +L L
Sbjct: 60 PSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119
Query: 69 ---------PDLYTH--SILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSLIKVCK 117
P+ +H S L+ + K G ++ VV +I RSC K
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQI-RSCG-------------LK 165
Query: 118 PDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRL 177
P +++ L KQ D ++F KM V N+ Y ++ + D +A++L
Sbjct: 166 PHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKL 225
Query: 178 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASSLLDLMIQHGVRPDAFTYNTLLDGFCL 237
EM ++GV P++ T+N ++ CK EA S+ D M + GV P+ TYN+ + GF
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSR 285
Query: 238 TGRVNHAKELF 248
GR+ A LF
Sbjct: 286 EGRMREATRLF 296
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 53 DTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPDVVTFTSL 112
D L L + + S G P + T++ ++ C+ GR+ +L + PD +T +L
Sbjct: 324 DEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL 383
Query: 113 IKV---------------------CKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNV 151
I K D +Y +I G CK ++ AKE M +K
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGF 443
Query: 152 KPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASS 211
P TY+ ++ GF N +E +L E +G+ +V + ++ +CK ++D A
Sbjct: 444 SPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKV 503
Query: 212 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 248
L + M + G+ D+ + T+ + TG+V A LF
Sbjct: 504 LFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALF 540
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 21/205 (10%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
P V ++N +L L ++ L ++ + PD T + LIN +CK+ +
Sbjct: 339 SPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVK 398
Query: 93 VLGRILRSCFTPDVVTFTSLIK-VCK--------------------PDAITYNTIIDGLC 131
V +++ S D+ ++ +LI CK P TY+ ++DG
Sbjct: 399 VKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFY 458
Query: 132 KQGFVDKAKELFLKMKDKNVKPNVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPNVV 191
Q D+ +L + + + + +V Y +IR C + AK LF M +G+ + V
Sbjct: 459 NQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSV 518
Query: 192 TFNVIMDELCKNGKMDEASSLLDLM 216
F + + GK+ EAS+L D+M
Sbjct: 519 IFTTMAYAYWRTGKVTEASALFDVM 543
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 33 PPPVSSFNIMLGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCFCKMGRVSHGFV 92
P ++++ ++ D + L + GL D+ + LI CK+ +V + V
Sbjct: 444 SPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKV 503
Query: 93 VLGRILRSCFTPDVVTFTSLIKVCKPDAITYNTIIDGLCKQGFVDKAKELFLKMKDKNVK 152
+ + + D V FT++ A Y + G V +A LF M ++ +
Sbjct: 504 LFESMEKKGLVGDSVIFTTM-------AYAY-------WRTGKVTEASALFDVMYNRRLM 549
Query: 153 PNVVTYTSVIRGFCYAND 170
N+ Y S+ + ND
Sbjct: 550 VNLKLYKSISASYAGDND 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,613,013
Number of Sequences: 539616
Number of extensions: 3659767
Number of successful extensions: 19137
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 11014
Number of HSP's gapped (non-prelim): 3179
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)